ID KA520030; SV 1; linear; mRNA; TSA; MAM; 5767 BP. XX AC KA520030; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27040 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-5767 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-5767 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; 519877dd98420027d68e871daf0d9661. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..5767 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 5767 BP; 1414 A; 1531 C; 1681 G; 1141 T; 0 other; caggatggga gactccaaag tgaaagtggc cgtccggatc cggcccatga accgaagagt 60 gcacaccaaa tgtgtggtgg atgtagacgc aaacaaggtt attctcaatc ctgtaaatac 120 caacctttcc aaaggcgatg cccgaaagta tgatcactgt ttttggtcta tggatgaatc 180 tgtcagagac aagtatgcag atgttttcaa gtgccttggt gagaatatcc tgcagaatgc 240 ttttgaatgc atgtatcttt gcctatggac agactgaatc ttacaccatg atgggcacgg 300 ctgaccaacc tggattaatc ccaagactct gcagtgggct ctttgagcga acccagaaag 360 aagaaaatga agagcagagt tttaaagtag aagtgtccta catggaaatt tataatgaaa 420 aagttcgaga ccttcttgat cccaaaggga cattaaaagt cagagaacac agtgtgttgg 480 gaccctatgt ggatggactg tctaaactgg ctgtcacaag ctacaagtct ttgatgtctg 540 agggtaacaa atcccgtaca gttgctgcaa ccaacatgaa tgaggagagc agccgatcac 600 acgcagtgtt caaaatcacc ctcacacaca ctttatacga cgtgaagtct ggggagaaag 660 tgggcaagct gagcttggtc gatttggctg gcagcgagcg agcgacgaag acgggagcgg 720 caggtgaccg gctgaaagag ggcagcaaca tcaacaaaac ccttggtctg gttatctcag 780 ccctagcaga tcagggtgct ggcaaaagca agaataaatt tgttccatac cgcgattccg 840 ttctcacttg gctgctcaaa gggggtaaca gcaagaccgc catggtagct acggtgagcc 900 ccgcagctga caactatgac gaaacccttt caaccttacg gtacgcggat cgtgccaagc 960 acatcgtgaa ccacgctgtg gtgaatgagg atcccaatgc acgaattatt cgggatctcc 1020 gggaagaagt agaaaaactc cgtgagcagc taaccaaagc ggaggcaatc tccagagctg 1080 aaagaccgac tggaagagtc agagaagcta atccaggaaa tgactgtgac ctgggaggag 1140 aaactaagga aaaccgagga gatcgcccag gatcgtgatt aaacagcttg agagtcttgg 1200 aatatctctt caatcgtctg gaattaaagt tggggatgat aaatgtttcc tcgttaatct 1260 gaatgctgat cctgctctga atgaacttct ggtttattac ttaaagctga taggttcagc 1320 aaattcccaa gatatccagc tgtgtggcat gggaattctt cctgaacact gtatcataga 1380 catcacgcca gaaggccagg ttatgctgac tcctcagaag aacaccagaa acggctcctc 1440 tgtatccagt cctattcagc tgcaccacgg ggacagggta ttgtggggga acaaccactt 1500 cttcagagcc taaaaagaaa aagaaagcag atcgagatga tgaggagcaa gacatatcca 1560 tgaagaatga caccagttct gagcagctgg atgttgatgg agactcgtcc agtgaggtgt 1620 ccagtgagat caacttcaat tatgagtacg cccagatgga ggtgaccatg aaggcgctgg 1680 gtagtaatga gtcaatactg aacagcctgg aacaacagca tgaagaggag aaacggtctg 1740 cgttggagcg ccagaggctc atgtacgagc atgagctgga gcagctccgg agacggctgt 1800 cccccgagat ccactccccc agcgctcagc agcgcctgcg gcagtggacg gaagagagac 1860 tgaataacag cctgatgagg ctgagggaac aaattgtgaa agccaatctg ctggtgagag 1920 aagctagtta catcgcagaa gaactggata agcgaacaga atataaagta accctccaga 1980 ttcccgcctc cagcctcgat gccaacagga agctccttag tgaacctgcc atccaggtga 2040 gaagaaaagg aaaagggaag cagatctggt ctttggaaaa actggacaac aggttactgg 2100 atatgagaga cctttatcag gagtggaagg aatgtgaaga agacaccccg gtcttacttc 2160 agacgtgcag atccattcta tgacgaacag gaaaaccaca gcctcatcgg ggtggccaac 2220 gtcttcctgg agtccctctt ctatgacgtg aagttacagt acgccgtgcc gatcatcaac 2280 cagaaaggag agcggctgca cgtggaggtg atgcgcctca gtggtgacgt cggggagagg 2340 attgccggag gggacgagcc cgtggatgcc tcctcggata aggagcccca ggagaacagg 2400 ctcgtgtgca tgcttcaagc cactggattg ccacagcatc tgtcccactt cgtgttctgc 2460 aaatacgact tctgggatca gcaggagcca gtcatcgttg ctcccgaggt ggacacctcg 2520 tcttctccca tcagcaagga gcctcagtgc atggttgtct ttgatcactg cagtgttagc 2580 atcactgaag actttattga gcatctttca gaaggggcgt tggcaatcga agtctatggc 2640 cataagatga atgatcctcg gaaaaaccca gccctgtggg atttggggat tatccaagca 2700 aaaacacgca gtcttcggga caggtgagtc accaggaaag tggagttttg ggttcaaatc 2760 ttggaacaga atgagaatgg ggagtactgc cctgtagagg tgattcctgc aaaggacgtg 2820 ccgacgggtg ggatcttcca actccggcag cggcgagtcc aggtggaagt gaagtctgtg 2880 caggaatctg ggactctgcc gctgatggag gagcgtatcc tgtcggtcgg catcgggtgt 2940 gtgagagtca gggcgccacg gtcaccgaag acccacgaga ccgtccatga ggacatggac 3000 agctaccagt tagagagact ccgtagaaaa tggctgaatg cattaacaaa acgtcaggag 3060 tatttagatc aacaactgca gaagcttgtc agtaaacatg ataaggatga tgccgaccgt 3120 gaagctcagc tcctagagat gaggttgact ctgacggagg agaggaacgc agtcatggtc 3180 ccctcggctg gcagcgggat tccgggggcc ccggcagaat gtcctgggat ggaaacacac 3240 attcctgtca tattccttga cttaaatgtc agctctcagg ataatcttga tgaccccgaa 3300 gccggtggat gggatgctac cctcactggg gaagaagagg acgagttctt tgagctgcag 3360 attgtcaaac agcatgacgg agagggaagc ctcctgggac tcggctgtgc acggctgccc 3420 tcagctgagt aaaggcaccc ccatggacga gcgcgtgttt ctcatcgtgc gggtgacggt 3480 ccagctcagc catccagctg acatgcagct ggtattgcgc aagcgcattt gtgttaacgt 3540 tcacggccgg caggggcaga gtctcctcaa aaagatgtca catcgaagtt ctattccagg 3600 ctgtggagtg acttttgaaa ttgtctccaa tattccagag ggagtagagg aacgagaaac 3660 gttagcaagg atggcagcta atgtggaaaa cacggcgtct gccgactcag aagcgtacat 3720 cgagaaatac ctcaggagcg tgctggcggt ggagaacctc ctcacgttag accgccttcg 3780 ccagggggtg aaggaacagt tgacgggaaa agggaagctg agcaggagga gcatcagctc 3840 tcctaatgtg aacagatagc cgccaggatc ttattccacc ctccagtctg ggtagcaaca 3900 aggggaaagt caacaggacg tatcacaaat tggagtttcc aaaggaattg ctccagctgc 3960 cccagccctc cgttctcccc agagtaacca ttctcctgac ccaggcctcg cagcctccta 4020 cttgaacccg gtgaagtctt tggtgccgca gatgccgaag ctgctaaagt cgctcttccc 4080 cgtccgtgac gagaaaaggg gcaaacagct gtctcccctc gtgcatcagc ccgaatcaca 4140 gtgcagtcgg cccttccgga cgtcgggtcg cccaggatgg cggaggagaa tggggggctg 4200 cgcgtggccc ccagcatgcc tgtggccttg ccagccaccc ctgcgcccag gacctgtgat 4260 gggcccccga gagtgacacc cacctccccg gcccctgagg gtggggatgg gccccccagc 4320 cccctgagcg aagcctccag cggctacttc tcacacagcg tctccaccgc caccctgtcg 4380 gacgcctgtg gcccgggtct ggatgcaatg gcctcgaccc ctccgggccc cggcctggcc 4440 gccctcgagc ccccggccgc ctcggtggag ggaaagacac cgggcagcgg ggcagccctg 4500 gccccagccg gggcatctgc agagaagcag aaccaggcag cgggcccacc accacccagc 4560 caggcgaggc cacccagccc caggggaaac cagttgccgg cccagagcct gacgtctcca 4620 ggccaccgcc gccttcagac tcctggttcc agccgcccgc tcccgcctct ccgttcagga 4680 tcaagaaggt gcggacttcg gagctgaagt cgttcacgcg catgcttggc ggggaccccg 4740 gtggcccctc ggggacagcg gaggacccac tggcctcagg ggacccaggg gacggcagtg 4800 ctggggctca ggccctggga aagctggaag tgtcctcgga ttctgaagaa gccagtgagg 4860 tcccagagtg gctcaaggaa ggagaatatg tgacggtggg caccaacaag acgggcatcg 4920 tgagatacgt ggggcccacc gactttcagg agggcacctg ggttggagtg gagctggact 4980 taccttcaga cggctccatc ggcgggaagc agtacttcaa gtgcaaccct ggctacgggt 5040 tgctggtgag gccgggccgc gtgcgcaggg cagcaggcgc agggcggagg cgcagcgcgg 5100 ggctccgcct gcagggtgcc cccgagcccc gcaggagtgg cccgctctcc agctctgcca 5160 ccaacctggc ctcgctgacg gcagcgctgg ccaagaccga gggcacggcg ctgcgggccg 5220 agcgcggcca tgggaacccc gaaaaccgca agtcctgggc cagctgagcg gcggggcagt 5280 tgcctcccat ccttccgggg tgatgggcag agggcaccgg gcggggcccc cccagccgct 5340 ctccctggag acaggccagg aatgcttttt gcacggtgac gtggggctgg tgacctccca 5400 cccctcccgc acatctcagc tggacctcag gcggaaggtt tcaggagccc agagtgaggt 5460 ccccgctgtg tccctgggcc tgggctgccc actcacggct gctgttgctc tttgttctat 5520 tctggtgacc ctgttaacct cttaatttaa aacataattg ttaactagtg ccttttcact 5580 tccatggagg tggcccccag cgcctcaagt cctggcttgc accccagtta ccccaacacc 5640 ccccaagtgc tggctcctct aagtgcctgg gccctgggcc tgtcccttct ttccctcttt 5700 ctttccacag ggtttcttag aggtgtcttt gtgggtgttt cagcatcttt atacctggaa 5760 agttttc 5767 // ID KA520031; SV 1; linear; mRNA; TSA; MAM; 1943 BP. XX AC KA520031; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27041 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-1943 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-1943 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; edb255bf85fce5c9e39aba7ce68d2479. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..1943 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 1943 BP; 365 A; 578 C; 644 G; 356 T; 0 other; ctcgtcctcg ccccgccgtg caaggcccct agatgaactt gaagcacttg gtcttgtcgt 60 ggggcaggcg ggtcttgaag agcacagagt ccacgcggaa ctgcgtgtac agcaggggca 120 tgtagccgta caccttgaca aagaagttga tacacttgtg ccgctcgtgg aagtgggaat 180 cgtcgtgtga cagagcctga gggcagcccg ggcatcggaa agtccaccgt gaggtcacct 240 gggagccggg gtttccgagt gatgtgggag acgaggaagt tcatggcgat gtcctcacag 300 ttgatgtatt catccaccat atctcggatg gcctggggca tcacgtaaga atacaggtag 360 gcataatact taaggcagca cctgtcagca ccatggacag ctcacaggag tagttggagt 420 tgtacagcca ggactgatga gggatgtccc acgcatggta acggccaggg aaacccacaa 480 tgcggtcccg tgcttctctc cacacccgac atgatttcat catggcggag gtgagcgtca 540 tcatcaatag acaggatggc ctctgtctcg atttcattcc acggcaggaa tcggttgttc 600 agactgttct tctcagtacg aaccacaccc caatgtcagg ccacaccagg tcctctgacg 660 gcagcttggg agaattccac accaccacga ccttgttcag gtaagggagg ccgttcagcc 720 tctctaagga gttcatgagc acctcctccc gctcgtaagt caacattacc accgtgaact 780 gctcccgagg gacgttgccg cccagcgccg cctgaaactc cttgccggag cccccggccc 840 cgccgccaat gggccggaat ccggtccctg agcccaggaa cttggcctcc gagggcagca 900 cggggtcaaa gggcgtgtgg gggaagagat ggaaaggccc cggggcggag ttccagccgc 960 ggtagaggtc ggtgacggtg agggtgaagt tgcggaggta cttgggcgag gcgtagggcg 1020 gctcggtctc caccgggccc aggtccaggt ccccggtgtc cgccatgttg gggtcggtgc 1080 cagccgcctt gcccgagcgg tgcgggatct cggccgcggc ctcctcccgg atgggagcgg 1140 ctgggatctg gatgcgcgtc cggatcacgg ccagcacggt gctgaagata ctgtccgtgg 1200 tggagaagta ggtctcccag aggaagcggc cctggcgccg catggccagc aggtcgctgt 1260 ccgagaggct ccgcagcagg aagtggacct cagtgacccg cggcttgggc accaccagcg 1320 ccgcctcgct ccactgcagc acgtcctggt aggggagctg cacgtgctcc cccagcacca 1380 ccgggacagc cccgacctcc agggcctcga agagccgggt ggcgccgcgg gtcccccggc 1440 gtgatgatga gggcgaaggt ggagagcttc aggagctcca ggcggtcctc ccgcccgccg 1500 cacagcgccc actcagtcgg caggctggct ctcggctggc tcttgcaggt gaattccacc 1560 aggacctgat cgagcttgct gtcctggacg gccttgaggg tggcgatgat ccgatcgtcg 1620 tagtcggccg gggggtcccc ctccgcctcc tgaaggctgg atctcagcga ctctatcttc 1680 tcgccctgga aggtgaagag gtatttccgc ttcaccggca cctgtggtgg gatttccatg 1740 aagttgggct ccgacatggc gtggactagg ggcgacacca ccaagtcaaa gccaggccgg 1800 tactgggccg catagaaggt ggactgggcc accatggccc ggccagtgct gacgttgtac 1860 agtaagttct gggtgtccga cttccgagac aggctgatga tgacgtggtt gtggccgtcc 1920 gtccgccagg gcgggaggga cga 1943 // ID KA520032; SV 1; linear; mRNA; TSA; MAM; 998 BP. XX AC KA520032; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27042 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-998 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-998 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; 3aef055f244f7ffe9d2e5f338b5329c0. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..998 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 998 BP; 205 A; 282 C; 278 G; 233 T; 0 other; cctggggggg cgggaggccg gcatcgtcct tctccgggag caggcggatg ggcagggaga 60 gcttgggctg gttctgcgcc atcagctcct tgtaggaatg ctctgtctgg ctgatgacgt 120 tcttgagctg aagcaggtcc tgcttggcat tctcgatgct cttcttgcag gcctcaatct 180 tcaggttcag cttggcgatt tcactgttca gctcctgccg cttggcttcc agctgcagga 240 gctcctcgct cacagactca cggatgcggc acaggtccag cacgtgcttc acctcgcaga 300 gttcgctgcc ggcccgcggg ccgaagatgc gcttgcccgc ctcgtctgcc tcgtccaggg 360 tggtgagata atagtgagca atgaggggga agaacaccag gatgatgaac agcgtgaagc 420 tgagccacgt gagccggatg cggttggacc agcgcagcat gcaggtctga cctccgttcc 480 ccgcgccccc attccgcaac atggtatagc cggtcatgag tccctctgcg gctcttgccc 540 ccgctggtca cgttggctca ctcgccataa ccacgggttt ctagtgggcc aggctcagcc 600 tcttctcact caacacgctt tcccaagagt tagtgtgctc cctggacaag gcaccaagta 660 gaatggaaat ttcatcttcc tcagctgtga ctgaaatggt ctctgaccct attccagcag 720 attctgagtt ctagctgtag gccaaagaac atgtccttaa tctctgtcaa aagccagagg 780 gtaccaaatg cttgttgagg tgggagggag aaggtccctg atggtggagc cggggaaaaa 840 caccctggaa tcagacagac ctcctcaacc gccatagctc ttgttgcttg gtttcgctga 900 ccaacacata cgcatagtta cttttcacag ttataaggta gctggttaga acagaaataa 960 atgccagcct cttaagtgtc actgccaata ttcaggcc 998 // ID KA520033; SV 1; linear; mRNA; TSA; MAM; 909 BP. XX AC KA520033; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27043 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-909 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-909 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; a49a4dff306c6a993ed264c5e61983d3. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..909 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 909 BP; 191 A; 219 C; 243 G; 256 T; 0 other; tccctgtcag cctttgctcc ggcctccttc ccggtggtgg tggcctcctc cagcctctct 60 cctcccactg ctccgtctgt ggctgtcatg cgggttcttg acgtgtggtc tgtcccgggg 120 ttgtccctat tcgtctcttc tcagagggca gggggtggtt tgtgaactga ccccaccatc 180 acgcctgttt tcttcatctc tgtatttctc ccaacttcct ggcccatcct gggaggcaga 240 acctgatgga aggtaagagg cgacaggtgc gctttggaaa ctaacaggac ggattggcaa 300 agcaagcgtc ttgggaaact ctttactccg gggatgttat gcttattccc cttattttgg 360 aagtaccttt ggagtccgtg gtgcctgctt tgagcagcct taatgatact gaatctgcac 420 ccatgcttgc gcttcagtgc gacgagagtc cagtgactag tgctggtgta gcggtggagt 480 cactgagtcc tgtctgactc tttgcaacct catggtagcc ctgcaggctc ttcttgttcg 540 tgggatttcc caggcaagaa gacgggagtg acttgccatt tcctggtggt caagtgaggt 600 cacaggtgca gaacacaagg accaacgggt gagtaaaatg gcttagattt aataatctga 660 cattgaagct ggctgtgagg gcaatcctgt aatttcagaa cacattctga gcaacatcca 720 caatattgca gttggcccga ggctagattc tttgaaggac ataatggatt tggatgtgga 780 aactctgact tttcggaaga aatctgtcct gttactttct ggtcctcgca ggttctgact 840 ttaccagggg caaaaagaaa aaaaaggaga gggagataaa tcccatctgt gaacttgtct 900 ttattggcg 909 // ID KA520034; SV 1; linear; mRNA; TSA; MAM; 1717 BP. XX AC KA520034; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27044 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-1717 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-1717 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; dfe1990676a4ec32fd29c85da6086630. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..1717 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 1717 BP; 347 A; 441 C; 524 G; 405 T; 0 other; acaggacctg ctgaggctgg ggtgggaaga cagggctgat gtgtgagctt tttgaggtgc 60 agccggcccc ctttctccac ccagatctag gagaagggag agattgtcct cacccagcag 120 cttccatcag aatgcatgga aagccctttt tctggtgcca gctgctccga tctggggtcc 180 ctcaggtcag gttgcagccc aacagataac ggtgtggcct cttctccaag cccagacgcg 240 taggtttgta aaaagactgt ccccaggaag ctgagccaaa aggctaaaaa gaattcacgt 300 tgtacagtgt ggcagatcga gactaccttg cccactcttt ccttgagaag agaccagacg 360 gtataatact cggcgagagc tcttcgctgt tccccaagtg aacccacacc cacccctccc 420 caccagctct ggaagacacc ccctcagaaa cactttgttt tcacttacgg tgtattcagg 480 agcctctttc tgattaaaga ttcccccttt ggccgagaga tcctgccctg aggtaggtcc 540 ctcttcgtct catgggaacc ggggattttc ccgtgttcct ccaaggccat ggggccgggc 600 tcgtgaagag aacagacaga aaggtaggtg gtagctcctg ccacggtgag agggcacaga 660 gctgtcccgt ggcaccacgg gctcacctgg ccctgtgggg accgtctggt tttcttccta 720 aggtgacagg cgggacagga ctcttcaggg ggcttctgcg gggtccagtc agtgtgatgg 780 ggagggtcag ttggatgtgg tgtcgtggtc ccagacacct gttaggcgtc ttttctgggg 840 aggttagggg gcctgaggag gtcatgtgac gggaactggg gttgatttag catctactgg 900 agacctcagg aatggagggg accccggact gtgtgacctg agagctgaat acgtgaatcc 960 atttttgttg aggagggaca agtagaggca gggggttctg tgcctgggcg agcagggctg 1020 ggggagggca cgtttttggc tcaaagcctc acctttctgc cgagtgggac tggtctgggg 1080 gactcctcag ggcctgcgtc ccaaatgtca ggggctcagg gaactctacc acgaggccag 1140 ctctctgggg cttgcacagt ggcatccagc ctttggctgt gagcaaggct gtccttcccg 1200 tccaggtggt ctcacctggc tgcaggaacc cgatagatgc ctttccatct gtgacaggca 1260 tgttagaaac tggcagacgg gaataggggg tgtgatggtg tgaacggtga tggtgacctg 1320 ggtttggtga cagaagggaa aggcactctt acacatgagt gtctttggtg gtgatggggc 1380 gaaaaaaaag tatgtggaat tctgtccctt ggtaaagctg gaaatcaggc cagcaagagg 1440 tgctgggttc ttcctcccgc tccttcaagc tcccagcttc ccaaagctga ctcccagctt 1500 cgcgccctgt gcacctgtag gtcctacccg tgtgaggagg gggcctttga gacgggggta 1560 gagggagctc tgcccagcag cgcctcccct ttcctcctta ctcaaagcct ttgctgggtc 1620 tcccctttgg agaccctatt ttcatttcct cctcagtttg gaccatgtag gtacaactgg 1680 atatcaagat tttctctaag taaggcaggc ttgtcat 1717 // ID KA520035; SV 1; linear; mRNA; TSA; MAM; 1637 BP. XX AC KA520035; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27045 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-1637 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-1637 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; cbbd719ab08ad7e130510912241881b5. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..1637 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 1637 BP; 335 A; 539 C; 493 G; 270 T; 0 other; aatgtcataa aatggagaag aaaacattaa agcaaaggaa gatggaaagc agcatggcca 60 gcgtcctgtc ccggcgcctt ggcaagcggt cccttctggg agcccgggtg ttgggaccac 120 ctggggctgc cccaccctcg gagcctcagg cagagctgct ggagggagcg gctccccagc 180 cctttgttgc ctccaaggat gcgccctgcc aggagcagcc taaggaagtc ctcaaggctc 240 ctggcacctc aggcctccag ctggtggcct ttcaccccgg gcagaagtgt ggtacggggg 300 tcaagagtct acaggactgg tggagcggca tagttgggca gaggataagg tgactgtctg 360 gctgttggac cagaagttac agatctgctg cagagcggag gaggtgtggc tggctgagcc 420 gccgggccgc atcccccagg tgccacctcc agagcaggga acccaggcgc cagcctacag 480 gcctgtgtcc aggaacattg atgtcccaaa gaggatgcag tggaaatgga cgagatgatg 540 gcggccatgg tgctcacgtc cctgtcctgc agccctgtcg tacagagtcc tcccgggggt 600 gaggccaact tttctgcacg gcctgcgacc cgtggaagga gagcggcgac gtgtcggaca 660 gcggcagcag caccaccagc gggcactgga gtgggagcag cggcgtctcc accccctcgc 720 ccccccaccc ccaggccagc cccaagtacc tgggggacgc cttcggctct ccccagactg 780 ataatggatt tgagaccgac ccagacgctt tcctgttgga tgaaccagct ccccgaaaaa 840 gaaagtgaag gtgatgtaca agtgcctgtg gcccagctgt ggcaaagtcc tgcgctccac 900 cgtgggcatc aaacgacacg tgaaagccct ccacctgggg gagtggactc cgaccagttc 960 aagcgggagg aagatttcta ctacacagag gtgcagatga agggggaagc tgctgcggct 1020 ggcggcccca ccgccgaccc ggctccgacc cctagcgtga ccagcccgcc cctcaccatc 1080 ctgcctccac cgcctcctcc caaagcccag tcctcaggcc cggatcaccc tggcctggag 1140 tcttacctgc cctccggtgc tctcagcaag tcagctcctg gctctttctg gcacattcag 1200 gccgaccatg cataccaggc cgcctttcca gatcccggtc tccccgcaca tctacaccag 1260 catcagctgg gctgctgccc cctccagcac ctcctccctg tccccggtga gtgcgccggt 1320 cgctaagctt cagcgagccc cagcagccac cccctgccat gaagtctcac ctgatcgtca 1380 cgtctccacc tcgggcccag agcaccacca ggaaagcgcg gggaagctaa gaagtgccgc 1440 aaggtgtacg gcattgagca ccgggaccag tggtgtaccg cctgccgctg gaagaaggcc 1500 tgccagcgct tcctggactg aaccatggcc cctcccggcg gcctgggaca caggcagatg 1560 ggtcccaagc ccacagcaga agcctaaaag ctacagagtg gacacgggga gtttgggctc 1620 tattggctaa ggttgaa 1637 // ID KA520036; SV 1; linear; mRNA; TSA; MAM; 311 BP. XX AC KA520036; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27046 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-311 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-311 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; b09db7bf4692fce744c4641ad63d13cc. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..311 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 311 BP; 77 A; 76 C; 96 G; 62 T; 0 other; tcatagtaaa aggtaatgta gcaccaggtc agattgtatg aaaaaataat atatataaat 60 ttgtcatggt tgctctattg acaactaggg caggttctgc ccgacatcag gcgcagcagc 120 tgcacttgtc cgaggcccct ttgcagacac agccctgggc acatttggca cagcccacag 180 ggcagcagga gcagcagctc ttcttgcagg aggggcatct gcaggccttg cgggtgcagg 240 agccagcgca gctgcaggag ccgccagtgg ggcaggagca gttcgggtcc atttggagga 300 agagcgagct c 311 // ID KA520037; SV 1; linear; mRNA; TSA; MAM; 1618 BP. XX AC KA520037; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27047 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-1618 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-1618 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; ff2c1284619f7cc3215f63263330e1ad. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..1618 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 1618 BP; 472 A; 351 C; 461 G; 334 T; 0 other; gataaggtag aatagccatt gcccttgaga agcttggtat ctaattgggg agacaaagca 60 tgctctaagt ggacaaaggc aggcggttac ataacaggaa atggcagaaa ctgaagattt 120 tctggttcgg gagctacatc cagtgatgat agaaccaatg agaaaaagaa gacgatctga 180 tcgagaccag aggtttcgag catttccctc tgtggaacaa agcgccctca aggaataaaa 240 ctggagtctc ggaccagaag agttttgagc aacacttacc agaaacttat tcagtccgtg 300 ttcctggatg ataacatccc cagcagcgtc aagtacctca tagaggactc agaaagatgg 360 ggtgacttga ccaggattgg agattagttg ctgtatgttc tgacattctc ccaaccttgc 420 tttgatgacc ttgacaatga gcgttttaaa actgatatag aaacaggctt cttgccttga 480 ttgaaaaacc atcattggac cccatctgca ttggattgtt cggaagcact ggggctggga 540 agagctccct gatcaatgcc atcatccggc aagccatgtt cttacctgtg tctggagaaa 600 gtatatgtac gtcatgtatc gttcaagtga gctcgggctg ctgtgagcag tatgaggcca 660 aaatccacct tctctccgac cagggaagga ggagctgaag aacctgacaa ctctcctgca 720 caggacggag gggccgggcg gagaagagga ggatgcgtgg gacaggggcg atgcagcgga 780 ggaagctgtt tggaagctgc aaatgtttta tggaaacgga gcagaaggaa agagctatga 840 ggagttacta agggccaagc ccagaggaaa gattcccacc tccagagtca tctccctcaa 900 ggcagaagag gcagggagct gtctgtcaag ctggacccct acatccggac ccagaggaga 960 gactgggatg gaggatccgc tgagacacac atctggccct tgatcaaact ggtggaagtg 1020 acccttccca agtcagagct gattccagaa ggggttgtgc tggtggacat tccaggcaca 1080 ggcgacttca atagcaagag ggacgagatg tggaaaaagt cgataagtgc tccgtgatct 1140 gggtgatcag tgacatcgaa aggatttctg gagggagagc ccacgaggac cttctgaatg 1200 agagcatgaa ggcctgccaa agagggttct gcagggacct ggccctggtg gtcaccaaga 1260 gcgacaagct ccacctgccg gaatatctga gagaaaagtg ggaaatctat tcaaagtcag 1320 cgagaagctg ttttagaaag aaatgaaatg ataaagctac agaggaataa aattctcaag 1380 gataaactca agaactgcca gctgactcca gggttctgga agcctccgag ttggtgtaca 1440 cggtcagcgc ccaggagtac tggcagcagg ctgtcctcac cgaggaggaa actgccccaa 1500 gctaagagag tatatcagga gaaggctctt ggataagaag aagaggacgg tgaccaagta 1560 cgtcactgaa gcttttggcc tgttgctcct cacagacagt ttcagctgca cagaccac 1618 // ID KA520038; SV 1; linear; mRNA; TSA; MAM; 789 BP. XX AC KA520038; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27048 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-789 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-789 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; c7d467c1a55bb68f62aaaed8adcc0618. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..789 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 789 BP; 233 A; 176 C; 216 G; 164 T; 0 other; cactgatggt tcagctctga tcccccacat agatgctttt aagctctctc tgcaggagaa 60 gatgactgaa attgggataa gaaatggctg gaaatatgac agctataaaa agagtttcct 120 gatccaggag gtgccatcct gggagacctg gaggaacaca tcctcagaaa gaagaggaag 180 atttatgagt ctctcaccac ctctgttcag aacgacctga agccctgtta tgaagatttt 240 tgccagaggc cgcacagatc acgggcaaaa aagcatgtga aagaatgaaa gatgtcctca 300 gaagaggggt ggaccggcag gtggccgagg gcatgtttga acgggcgcaa gaaaggatgc 360 agcaccagtt ccagcagctg aaggaatcac ggagaaggtg aagggcagta tcgctaccat 420 gctgaccctg gcttcgtccc caggggatgg gctctacaag gagcttgcag gtaaatacat 480 acaacctttg tgtactcggg agcaagacaa acagcctcag ggttctggac tcccttcttg 540 gtcacagtct tggctcccct cactcaaaag tgaatacaag gagatggaga agctgcacag 600 aagcctgaga gaggttgctg agaatgcagt gctgcggagg ggcatgcaaa acttccttct 660 gagaatgtcc cccagcaaag ctggcccccc gaaaacataa gatttaattc ttggggctta 720 gccccaaggg gatggaatac cagcctagag acaatcagat ttacttgtgt tggttaaaag 780 ctaataaag 789 // ID KA520039; SV 1; linear; mRNA; TSA; MAM; 3309 BP. XX AC KA520039; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27049 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-3309 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-3309 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; 6e94634237c1fc0bb999c752c6f3a450. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..3309 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 3309 BP; 701 A; 930 C; 1033 G; 645 T; 0 other; cgctggtgcc tccacagaac atctcgagcg ctgcccgagg ctgaacgagg ccagacacca 60 agacagggac tcccacttgg gcacaaggtt gagtcttgcc tcctgatctg atcctcctgg 120 agaagtgacc cccgagaccc tgggcaccgt gcagtctcta tgactccgtc tggattcggc 180 tggctgtggg gacaagctct gaggggctgc ctgggtctcg gggtgggggc agtggccagc 240 tctccagcca ccatggcaaa tgccaggaac tgaggggaca ggttctgcag cttcactggg 300 ggcactcagg atggagaaca aagccatgta cctgcacgcc accgtgagtg accgcgactc 360 cagctccatc tttgaggagc cctttgatgg caggagcttg tccaagctga acctgtgtga 420 ggatggtcgc cacaaaggac gagcaggtgg ctgctgtacc cagctgggct ccctgtcagc 480 cctgaagcat gcagtcctcg ggctctacct gctggtcttt ctgattctcg tgggcatctt 540 catcttagca gggccccgga gctccccgga cgacctgaag gcgctgactc ggaacgtgaa 600 ccggctgaac gagagcttcc gggccttgca gctgcggctg ctgcaggccc cgctgcaagg 660 ggagctgagc gagcaggtgt ggaaggcgca cgacgcgctg cagaaccagt cggactcgct 720 gctggcgctg gcgggcgcgg gggctgcagg cccaggcggc gcagagcgag caggcggtgg 780 tcttgctgcg ggagcgcgcg gcccagcaga gcgacgcggc gcagctggag ctctaccagc 840 tgcaggtgga cagcaaccgc agccagctgc tgctgcggcg ccccgccggc ctgctggacg 900 ggctggcgcg ccgggtgggc gccctgagcg acgagctggc ggacgtgggc ggcgcgctgc 960 gcggcctcaa cctcagccta tcctacgacg tggccctgca gggcacgcgg ctgcgagacc 1020 tgcgcgtgct ggtgagcaac gccagcgagg acgcgcgccg cctgcgcctg gcgcaccggg 1080 gcttggagct gcagctcaag caggagctgg ccgtgctcaa cggtgtcacc gaggacctac 1140 gcctcaagga ctgggagcac tccatcgcgc tgcgcaacat taccctggcc aaaggcgggc 1200 cccaaaggcg atccggggga tgcagggaaa gaaggcgagc ctggaatccc tggactacct 1260 ggacttcgag caggggagag agggacccca ggactgcccg gccccaaggg tgatgaaggg 1320 aagctgggag ctactggacc aatgggcatg cgtggcttca aaggaggccc aaaaggggag 1380 aaaggagaga aaggagacag aacagtggat gccagcgtgg aggcggtgat ggtacggctg 1440 gtgaacggct cgggcccgca ccagggccgc gtggaggtgt accacgagcg gcgctggggc 1500 accgtgtgcg acgacggctg ggacaagaag gacggggacg tggtgtgccg catgctgggt 1560 ttccctggcg cggaggacgt gcaccgaacc gctcagttcg gacaaggcac agggagaatt 1620 tggatggacg atgtcgcctg caagggcacc gaggagagca tcttccgctg cagcttctcc 1680 aagtggggag tgacaaactg cgggcacgct gaggatgctg gcgtgacgtg caagagacac 1740 taacggtggg cacagcccga ggtctgggcc cagctgccga gcctccttcc tgcatttctg 1800 gggtgggggc aatgctcaga gatcccctgg ccgcccagca cccccagacc cctgtaattc 1860 ccatcccagg accacggtga cctgtcaccc tcctcctctt ggacatctat tccaaggcac 1920 aactctggga tccactgcct gtctctccct tccaccacgg ttcctgcctg gagccctggt 1980 cggctagatc gcctttttcc agagtcttct aaacactgtg ccctcagggc tacctgtcca 2040 tgttctctgt ggtctgtgag ttgcagatgg atcctggcga ccaatgcagc agtgaagatg 2100 ggcaggaggc atcccaggtc gattactctg cagatcattc ccaaacctca ggccaagagt 2160 tttgaccagc aagagacgat cctgagtgat tcaccctccc ctcttcactc tgcctctgca 2220 cagcgtttgt tagttcagga aagtgacata gaggaggggc ggctctagga gtgagaggga 2280 gatgccagcc tcctgcagga accagtctga aaggcaagtg aaaggaacat ttactgagtg 2340 actgccatgt gtgctacata gtatctcggg cgctcaattc atgtatcact ttgcagcact 2400 cctgcaagtc atgctggctt gggtaccact tgacctccag gtagcactcg actgacccat 2460 tcacctagcc tatcagtcag atggagaatg agaccattgt ttcaacctga actctcatat 2520 gtctttgctt agactcaagc aagaagctgg ggtgcagcac aagtgtgact aaaagattac 2580 atactccaaa tcccataggg tgtaagttca aggttggatg tgactggctt ccaaggcaac 2640 catccacata ggaggatgaa tttggagggt gacatgggag ctatctgggt taaaccaagg 2700 ccatccctca gtcatctggc aatcagggtt aaagccacat tgcctgtgtc tcagatacaa 2760 aaccttccag gcctctttgg gtatcatcct gtggtcaaga aaacacatgt cctgatggag 2820 cctataagac tggaaggaaa tgcggattcc ctactacatc taggggaaga agaggctgtg 2880 ggcctctggg agccctcagt ctgcacccct ttcctagtga tggggagatc agagtctgct 2940 tttgacacga ggaggaggtc ttgctgggca tttctgtgtt ctaggcctgg ggagcttcat 3000 ggtagcgagt gagcataggc ccagcgacct tgggggagtc acagactcag acacgcccca 3060 gaaacctgtc ctacctggtg agcatcgcct gcctggggaa agcgatggct gggaccctct 3120 ggggataaga ccagcaaagc tcctggctga caactaaacc agtacatgct attggttgtt 3180 ctttgcttat aatatgctat tatctgctat gtttacataa catgcatgta ctcatgcatc 3240 tttttccaga gccaatatat gtatgcatat atgaacacgg cactctttac tacatagctc 3300 agtacatcg 3309 // ID KA520040; SV 1; linear; mRNA; TSA; MAM; 457 BP. XX AC KA520040; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27050 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-457 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-457 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; d59279569a56283214d0bf087b2663c3. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..457 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 457 BP; 110 A; 118 C; 134 G; 95 T; 0 other; ctgagagcct ctgatgttcc cagccaagaa aacagaggga agagctgaag cttgggccct 60 ggggcaacgc agcccccttg gagaatctga gatctcacag agaatcagag gatgctggga 120 gatcactaac aggcccacta ggatttgtgt tctgggcttc ccaggtggcg cagtggtaag 180 gaatccattt gccagtggag gagatacctg ggtcacgaag atcccctgca gaaggaaatg 240 acaactgttc ttgcctggag aatgccatgg acagaggagc ctgtcagcta tggtccatgg 300 ggtcgcacaa cagttggaga tgatgtagcc gctgagcaca cagcatctgt gtttcttgca 360 tgaaccatat tcagctgaca cccatcctcc tgggggcctg gaggaccaca gcacccccct 420 ctccttggca aacagctggt ggtttctggg atctgcc 457 // ID KA520041; SV 1; linear; mRNA; TSA; MAM; 924 BP. XX AC KA520041; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27051 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-924 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-924 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; 0d5bd6ea110bdff1b5bc17658aaf78aa. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..924 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 924 BP; 221 A; 237 C; 213 G; 253 T; 0 other; gctcagtttt taaacgtgct ggaatgtgta cgtattatag caacaggaca gagatcaaca 60 tctgacagct ttcacacgat cccgacacaa ctctttgtct atactctata taaataacct 120 acccctaagt ttactcctta agtgacatgg ccagttttag ttcatgaatc acggtgtcca 180 aatgagttga ttaacttgct ttttgtctct ttgcctgagt cacggttagg tcacttgcaa 240 gtctcatgca aaaccgagaa actagataca ggagttaagc cttgaaaaca ggtgacatct 300 tgagaacatg caggagcagg tggtgtggga ggggggtctg agtgtccagg ctccatgggc 360 ttggtcagca gaagcccgac ccagccctga gcaaggctcc gagggagggg gagcctcctg 420 ccaggggctc agggcggtcc atttgctttg ctcagcctct gtgctgagtt ttcaagacat 480 ctggatcggt ttcctgccag gcaggagatg cctccagatg gactggtgtg gtgttattct 540 agcgtcttta ccatgtatgg accttgcaat ctgtagccaa tctttctgta ataattcctg 600 gtgccgaccc ctgtataaca gctattttcc cagatccatg ttcttctctg gctattcgtt 660 ctgcttcctc catcagcagc atgccaaagc cctgtgctga aatttagtgg gatcccgact 720 gcttacaggg accacacttc cgtacacatg cagctctcgg actatggaca cacccccaac 780 cagttcgaag cggaatgtct cctctgaaca cttccgtaat ctcaggaggc caatcaagat 840 gtcctgatct gggtcttcat aagataagaa ggtttcccag cctccatttg caacataatc 900 tcttctcacc aattcaacct ggta 924 // ID KA520042; SV 1; linear; mRNA; TSA; MAM; 1307 BP. XX AC KA520042; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27052 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-1307 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-1307 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; 9b09acb454472e82aa8bf176c8229067. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..1307 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 1307 BP; 295 A; 354 C; 313 G; 345 T; 0 other; ctttgtgatg aatttcttgg attccaacct ccctggttct cacgtcacga caattccaag 60 gtctttcatt cttgcaaatg ccagctctct caagtttcca tgctccactc ctgagctgac 120 taacggcatt ggaatatctg cacgcggtac actcgagtcc acgggggcac gagggccagg 180 atccgggcca ccaactcgat caggtcgctg ggggaataac tcttgtatct tcctgacttc 240 cacagctcat agagccctgt cccacgaatc accaaggtag ggtagagttt caaaccgtca 300 ggacggaaag ctgggttctc gaaaaactct gaactgttca atgtctctct ccagccccac 360 gttcggcaga tcgggcatca tgtgagccac gactttgaag ccagaatctt tggccaggtg 420 gaaggactcg cacactgccc tcacagtgtg gccctggtat ctcgggccac atcctcatag 480 acactctgca ccccaatctc cagccttgtg cagccgtagg tcaacatgtc actgagatgc 540 cgcttcatgc agtaatctgg tctggtctca atagtaattc cgatgcactt tgtgaggctt 600 ctctcagaat acttcggcct cataaatatt gttggaggta tgtcctgata aggcatcatg 660 taaatttcga ataaaataat ctctgtattc ttctggaagg gccataaatg ttccacccat 720 cacgataaat tccactttat ccacactgtg accaagttgt tttaactcga tccggtgtct 780 tgtctgcagg taagggtcat acctggcacg gatagctcgc atggaggttg gctctatcca 840 gtgtaagact gggtggaata ttcgaaatct gaatcaggtc cgccagggca gtacatatat 900 ttcctgtaaa actgatgtgt ggacatctgt ggggtttgca catgacagcc acaacagcaa 960 tcctggcagt tctgatgggt ttcgccttca gcttggggac caagaccttc cgatactgag 1020 gcgggaccgc ggcgatgatg tccaccaggc ggggctgcgc cgagagcccg tatttggcag 1080 ctgtcctggt cttcacctta gatcgatgtc ttttccctgt tcgtgagctt caattagctg 1140 tttaataaca tctcctatgg tcagcatcat tagctgagca gggctgaggt ctccttgcgt 1200 ttctgcctca tctctccgct gtcgttgcag ccgccacccc agaaaatgta ggtatctact 1260 cggaccacgg gggaaattga cagccaccaa gcaaccctgt cctgtcg 1307 // ID KA520043; SV 1; linear; mRNA; TSA; MAM; 808 BP. XX AC KA520043; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27053 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-808 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-808 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; 2e64f7edcf1f605ee842b643c0017302. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..808 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 808 BP; 202 A; 181 C; 222 G; 203 T; 0 other; ggtggtggcc ggaggctttc caggtgagaa aatggcattt gtgaagagtg gatggttgct 60 gcgacagagt actattttga agcgctggaa gaagaattgg tttgacctgt ggtcagatgg 120 tcacctgatc tattatgatg accagactcg gcagaatgta gaagataagg tccacatgcc 180 agtggactgc atcaacatcc gcatggggca tgagtgtcgg gatattcaac caccagatgg 240 gaagccaaaa gactgtatgc tgcagattgt ttgccgagat ggaaaaacca tcagtctttg 300 tgcagaaagc acagatgatt gtttggcctg gaagtttaca ctccaggatt ccaggacaaa 360 cacagcttat gttggctcag aagtcatgta tgatgagaca gctgtggctt cctccccacc 420 tccttacaca gcgtatgctg caccgacccc tgagcaggca tatggctatg gtccatacag 480 tggtgcatac ccaccaggaa ctcaagttgt ctatgctgca aacggacagg catatgctgt 540 accctatcag tacccgtatg cagggcttta tggacagcag cctgccaacc aagtcatcat 600 tcgtgagcgg taccgagaca acgacagcga cctggcgctg ggcatgctgg ctggagcagc 660 cacaggcatg gccctggggt ctctgttctg ggtcttctag agtccgtgga acctcggcgt 720 gcatagcttc tgataccccg tgtgcaataa tatgatttgc agggcatttc tgtttgttat 780 aaatgttttt agtaataggt ttaatagt 808 // ID KA520044; SV 1; linear; mRNA; TSA; MAM; 391 BP. XX AC KA520044; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27054 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-391 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-391 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; 1509568e9a651b2f52197ca6ea5e054e. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..391 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 391 BP; 90 A; 69 C; 97 G; 135 T; 0 other; aaaggtgtgt ggaggtagat ttatcttttt cagaggcatc atggttttag tgtttgtttt 60 gggcattttt tattgccact tcagcctact tatagcttat ttttctactt gttgagaaag 120 tattattaag aaagtgaaat gagagccata gttgcagtgc tcctgttcca ggggattggg 180 ctgcacggag gatgtgtttc atgtccttct gaaggctgtt gatgagccca tctcctgtct 240 tgtgtagggg gaaactcagg ttatagatgg gaatttcggc ccagagacat gaatgacctg 300 ctcaagatac ctttccacct gaccaggaca ctggccttgc ttttatttct gactttagtg 360 tcacagagaa gcttgaacca tttaattttg g 391 // ID KA520045; SV 1; linear; mRNA; TSA; MAM; 428 BP. XX AC KA520045; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27055 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-428 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-428 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; 2b0f1b0da75002a479bd6f5a0520e173. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..428 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 428 BP; 104 A; 89 C; 99 G; 136 T; 0 other; gactgaagtc ctgacataca tgtgctcccc catctccagt ccctgtccct agctgggcaa 60 gccatgctgg gcaactgtag ttgagtctgg aagttcactg tccctagtga cttcatcctg 120 agaggaaatg cgtgctcagc ataaagacgg gctgagatgc ttcatttccc tggctccagt 180 tctcatagat gccaatcttt tggtcacctt gcttaggtag tcctaaatca agaagttagg 240 tgagttggaa ggaacttgtt cactttaact gaagtaaaat gtttagtcag cattttattt 300 ccatgtgcac ttttaaatag ttggccgttg atgttgcaca catgccagtc tgcttgtttc 360 ttagctctgt gcatttaatt tcttgagtta acttcaaggt tagatttaaa gagaagggag 420 agatgagt 428 // ID KA520046; SV 1; linear; mRNA; TSA; MAM; 3150 BP. XX AC KA520046; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27056 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-3150 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-3150 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; 5ea53fd8b2ef711c6379348e27516d1d. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..3150 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 3150 BP; 875 A; 660 C; 731 G; 884 T; 0 other; ctccgcgctt ccggtatcct gagcttccaa gtttgagtac tgctgctggg cgctgtagtt 60 gtcccaccgc cgctgggatc atggtgttct acttcaccag tagtagcgtc gtctgcttac 120 actatttaca tgggaaagga taaatatgaa agatctgata aagtatggct ggcctgaaga 180 tatttgatgt ggacaaactc tcttcggctc atgtgtacct tcgattgcat aaggaaaata 240 gaagatattc caaaggaggt gctgatggac tgtgcccatc ttgtgaaggc caatagcatt 300 caagagatga acaatgtgaa cgtggtgtac accccgtggt caaacctgaa gaagacggcc 360 gacatggacg tgggccagat tggctttcac aggcagaagg atgattgtga cagtagagaa 420 gaaagtgaat gagatcctga accgattaga aaagaccaaa atggagcggt tcccagacct 480 agaggcagag aaggaatgca gagaccatga ggagagaaat gagaagaaag cccagattca 540 ggaaatgaaa aggagagaaa aggaagagat gaaaaagaag agggagatgg acgaacttag 600 gagttcatca ctaatgaaag ttgagaatat gtcttcaaat caggaatgat tcagatgaat 660 tcatgtgaat ggagaaaagg accttttaaa gatgtgaatt tggggcagtg tgcagaagta 720 aaaaacaacc aaccaaaatt ctgccttcat aatactccac aaatattacc aactttggag 780 tttaaaaaaa gtgttccctt ttttgctgtc agcaaaggat cagatgaata tatatgtgta 840 tataaatgtg tatacagtat agtcagcata taactttagg aaagtgaaaa tatttttgcc 900 agaacatgcc ttggaacctt gcgaaagttg gccgcccctg ttcttggaat agactctaga 960 acgaaccaac tctggaaagt atttctatta ctgcggtctg tcctgaaaac agatgtcttg 1020 aaaagctcct catattctta aaatagtctc agttctgtta agaagaacgt attgatgagc 1080 aatataagtg aatgttcctc tcacccctga cttcctggtt aaggaaaaaa aaaagatatg 1140 ggttttgaaa gtgatagtga tatttcagaa gataactggc ttcactggtc atgtcccata 1200 gtgccatccg agtttgttaa tggatctgcc ctcatctctc agcttctcca agcttccacc 1260 tgctatatcc ttccttttcc cattgaaagc ctctacccag gcaccatcag acttaagaaa 1320 aagaacagtc gatgttaatc agatttgggc cttatggcag tttttacctg agccccaagt 1380 tgtatattac agcttccggc tccagagtca tttctcagca ttgagggaaa aaacaggaag 1440 gagtgctctg tgaactcctt tgaagatgta ggttacctgg tttctgtctt gggatgtagc 1500 ataaagccca agtctacttg gcaattatgg tttagaaaga ctaaagcatg tcacttgcca 1560 gccgagtagt ttgttattta ctttgaaata atatttattt tgagtggtaa tcccggagct 1620 cagattcctc agttgtagac tcagtaactt aataggtaac agtcctgctc atctgaacca 1680 cctgtcttcc agggtgactc tgaatagaag agagatctct gtgacaacct gtaaagcaac 1740 cgctatggaa agagacaaaa caatgaaaag gaaagacaca aagtctgtgg gtcagaaggc 1800 agagaggttc atactttaac cacacccaga agtcttcagc tctgttccaa cccagcaaaa 1860 gcgcctcctc caatagatac tccacctgta atagtggaat agaaacaagc ccaagttggt 1920 gtgtggggtt gaactggaaa acgtcttggg ccaaattttg agagagggtg cagaagatga 1980 acgcatagat tagtgattat ctctgtatat atgtctcatg acagcccgga attctgtgag 2040 ttggaaatgt aacaataaag actcatgttt tctataactt cttagaattt gctcgttagt 2100 tccctcccca agctggttct tagggtaatc aggctgtgaa acccttctct gtcacgtggg 2160 cttaatctaa caggttctac aggggtggac ttcctccttc actgacagat gtgtctgtcc 2220 cagatgcccg tgggggccag agtggacgac ctttctcagg caccttcttg attcagggta 2280 gatcagggtt actgtaaatg aggtgctgca gctgtctcga gtggggagac tgcctctggc 2340 attgcctgtg taacctcctc tctctgcccc atgttacagc acatacagga agaactttgg 2400 aagaatacat ctatttttac tgtagtgtga gagatcctgg ggtccacatg gtacactctt 2460 ggctgacact ggtttcaaat ccctggccct cgaccctttc cagctgctct ttgctgattg 2520 cccctcttcc ccctctttct gtgcgatggg cagggttttt gaccagctcc catggcccca 2580 gaggaagcat cctctttttc ttctgagaac attggctcag tgccaacagg ccaaactgtt 2640 ggcattgaag tcatctcatt tctggctatt ggcatgttcc ctcagctttt tataggaaaa 2700 ttccagactg ttggcatttc tgtaagctgt gcccttgatc aaatcacaca ccgtgagcat 2760 ttctcttttc cactccgcct ccagtctccc tactctgatc tgtgtgcggg tgagggtcac 2820 atgattattt acttaacaag ctgtcgtgtt cctgtagctt gagaatttat ttcttatcca 2880 ccttttttga cccagagtca caatcttgag ggcaagggaa gtttgtcaca gtgtgtggga 2940 tagaacagca aagggaaggt tttgaccttt gcagagtagg cgctcagctg tggtggatcc 3000 ccttcagtat ctgtttttgt tgctgtgctg tgttgaacat tgtctaaagc ccagattttg 3060 tgagccacac atgtagcaag attagagagg gaagtaggtt ctggcctttt gtttaagacc 3120 aaagctgttc ctcccacatt tgtatccatc 3150 // ID KA520047; SV 1; linear; mRNA; TSA; MAM; 316 BP. XX AC KA520047; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27058 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-316 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-316 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; 07b280cece33e8dea2959c1f9fcd019c. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..316 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 316 BP; 50 A; 108 C; 105 G; 53 T; 0 other; gattttagag tttctgggcg ctgaagatat agggtacctt ccacccgcgg gcctcgaacg 60 tagagcccgt ggaggcccgc cgagcccagg acctaccgcg gaataaatcc ggtctagggt 120 gcggcgactc actggcttca tggtggtcgc agcaaccgcc gggggctccg ctgtctcgcg 180 aggagggtga agcgcccccg cctactcccg ctccggaggg ccggcggaga agtcgtagag 240 ttcgccttcg tggatcctgc cgtcaccgac ccagccttct gggccgccgc gaactggcca 300 cgagcgcccc cgtccg 316 // ID KA520048; SV 1; linear; mRNA; TSA; MAM; 574 BP. XX AC KA520048; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27059 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-574 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-574 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; 137878f4f2caf62e29925036e70c139c. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..574 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 574 BP; 148 A; 137 C; 154 G; 135 T; 0 other; acggaggcag gagcagagtg acgttataac ggcgcgccgc tcccaggcgt cctcgcaagg 60 tcgctttgca gtgcgggagc gcgcgtaagt gacaagaccc tggttccggt gcgcgccgtc 120 tcctgctgcc gtggtatcag cagcgacatg tcggggtata cgcccgagga gaaactgcgg 180 ctgcagcagc tgcgagagct aagaaggcga tggctgaaag atcaggagct gagcccccgg 240 gaacccgtgc tgcctccgcg gagggtgtcg cctgtggagc gattctggaa taaatttttg 300 caagacggag ctctctggaa gaacgtgatt ctataagaca taccgacaca gtatctttgc 360 ttttactcat gtacttattc ctgtctggat tattcattat tatctcaagt atcacgtgac 420 tcaaaaccat ataccatcgt tgaaaagaag cccagaatat ttccagtgat acaattctgg 480 agactggaga agtaatccca cccatgaaag aatttcctga tcaacatcac tgaagattac 540 tttaaaattt caaaggtgta tgggcctaag tttg 574 // ID KA520049; SV 1; linear; mRNA; TSA; MAM; 2754 BP. XX AC KA520049; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27060 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-2754 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-2754 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; 392efb661067e285830d4589da9d492e. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..2754 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 2754 BP; 919 A; 518 C; 622 G; 695 T; 0 other; tgacttcaag gaatatgtcc taagaccttc gtacaatggc tcttttgcta ctcctgaggt 60 ccgacgattc cgctatcgca caactatgac aagggaacga agtgcttctg ttcattcacc 120 tagtagtacc gtgaatagaa gaacaacaac tccaccagac agtggagtat tatttgaagg 180 gttaagcatt tcagcaagac ctagagatgg tgaaattcct ccatttatga gacagatttc 240 aataagaagg ccaactacta cagatgagag atctttgcgg aaaattcaag aacaggatat 300 cattaatttt aggcgaactc tctatcgtgc tggtgctcga gttagaaata ttgaagatgg 360 tggtcgctac cgggacattt cagctgaatt tttccgtaga aatccagctt gccttcacag 420 attagtcccc tggttaaaac gtgaactgac agttctcttt ggagctcacg gatctttagt 480 aaatatcgtc cagcacatca tcatgagtaa tgttactcgc tatgacttgg agagtcaggc 540 atttgtgtct gatttgaggc catttttgct taatcggact gagcatttta tacatgaatt 600 tatcagtttt gctcgctctc catttaacat ggcagccttt gatcagcatg ctaattatga 660 ttgccctgca ccttcatatg aagaaggtag ccattctgat tcttcagtca taacaatatc 720 tcccgatgaa gctgagaccc aagagctgga tgttaatgta gccactgtta gtcaagcacc 780 atgggatgat gagactccag gaccttctta ctcaagctca gagcaggtgc atgctgccat 840 gtcttccctt ttaaatactt ctgacagttc agatgaagaa cttgtaacag caagagctac 900 atctcagata caaggagtac agaccaatga ggacctaaat aatgacagtg attcttcttc 960 agataactgt gtcattgttg gatttgttaa accactagct gagaggaccc cagaacttgt 1020 tgaactgtcc tctgattctg aggtagagtt aggttcttat gagaaaatgg agaccatgaa 1080 gacacaagaa caagagcagt cttacagttc tggtgacagt gatgttagta ggtgttcgtc 1140 tccccgctct gtcattggaa aagatgaaca aataaataaa ggtcgttgtg attctggtac 1200 aaaaatcaac tcaaagaagg aagagaaacg atctatatca ttgtcctctc tcagagacct 1260 gagctcatcc ctcagaggag acagagtata ttcgccatat acccgcagac acagaaagag 1320 gggaagatca agaagttcgg attcacattc ccagagtagg agtgggcatg atcagaagaa 1380 tcgtagaaag catcatggga agaaaagaat gaaaggcaag cgatccagaa gcagggagag 1440 tagtagacct agaggtagaa gagataaaaa gagatcaaga accagcgata gcagttggtc 1500 aagaagaagc caaactctgt ctctaagtag tgaaagctct agcagatcaa gatctcgtag 1560 cagtgatcgt ggtaaaagaa gatcacggag cagaaatcga gatcgttact acttgagaaa 1620 taattatggc agcagatata agtgggagta tacttactat agtagaaata aggacaggga 1680 tggctacgag tcatcttaca ggaggaggac tctgtccaga gctcactatt ccagacaatc 1740 gtcaagtcca gaacttagaa ttcagtcctt ttctgaaaga acaaatgctc ggaagaaaaa 1800 taatcacagt gaaaggaagt actactacta tgaaaggcat agatcaagga gcctatctag 1860 tagtagatca aagactgcat ctacagggcc tgaccgggtg agaaatgaaa agcctggtgg 1920 gaaacgaaaa tacaaaacac ggcatttgga gggtactaat gatgttgctc aaccatctca 1980 tgaatttgct tctaaagtaa aggaaggtca ttattcaaaa tcttcatcaa aattggatgg 2040 aggctacaaa aatgagagtg atagcttttc agatagccgg tcatcagaca gagagacaaa 2100 gcacaagagg agaaaaagga gggcccgcag cctgagtgta gagatagttt atgaagggaa 2160 agctaccgaa acaaccagac accataaaaa gaaaaagaag aaacataaga ggaagcataa 2220 gagacaccat ggtgataatg cttcacattc cccagttgtg attaccattg acagtgacag 2280 tgataaagac tgtgaagtaa aggaggatat agaatgtgac cctagtggtc ctcaaggccc 2340 tctccaaagt gaagttttgg ctccgtttga atctaaagat gtagttacaa tagaagatga 2400 atttggtgtc ctgagcaagg agtgtgatat taccatactt aataacaact tgaataatgc 2460 caataaaact gtggataata tatcacccca ggcagcttca attgaacaaa ctcttgatgt 2520 aagagaagag agcaccttgg cctctgattt ggagaaccaa cccagtactg tctcttttca 2580 gactgagcca tcaaggacat catcattaat gtcagtgtct cttggtagag accataatgt 2640 gtcttaaaac tgccaaagca tctctttgag aattctgatg gtataaaaag aagaaaaaag 2700 attagtgtca tctattgcaa tctgtttaga gatgacactt ggtgaaaact cttt 2754 // ID KA520050; SV 1; linear; mRNA; TSA; MAM; 336 BP. XX AC KA520050; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27061 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-336 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-336 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; e0d707107c92d57c321de2720a5d8e69. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..336 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 336 BP; 73 A; 89 C; 109 G; 65 T; 0 other; cggagccgag ctctgcggag ccgagcagag cgcaggagaa gcagggggtc gcggggagcg 60 gagccgcagg catgacggca gagcagcggc ggaatttgca cgccttctgc ggctatgtca 120 ggaagatcct ggaccctacc tacatcctga gctacatgac cccctggttt agggacgtgt 180 ggtgcagcat attcaggccg agaaaaacaa caaggggccc atggaggctg cctcactttt 240 cctccaggtc ctattggagc tccaggagga aggctggttc cgcggctttt tggatgccct 300 tcaacaagca gttattctgg actttatgaa gccatg 336 // ID KA520051; SV 1; linear; mRNA; TSA; MAM; 608 BP. XX AC KA520051; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27062 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-608 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-608 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; 547748cf4715c660f8d0b4f3ec2e9211. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..608 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 608 BP; 206 A; 109 C; 151 G; 142 T; 0 other; ggaatgaccc tcccagcaca gaagtgtgca ctggatgcat tccgaaccaa cagagacagc 60 aagattctaa ttgctacctc ggttgctgat gaaggcattg acattgctca gtgcaatctg 120 gtcatcctct acgagtatgt gggcaatgtc atcaaaatga tccagaccag agcagaggaa 180 gagcaagagg cagcaagtgc ttccttctga ctagtaatgc tgatgtaatc gaaaaagaaa 240 aactgaacat ctgcaaagaa aaaatgatga atgtgtccat ttcaaggctg cagggatgga 300 atgaagcagt atttaaggaa aagttcgcca gatacagatt caagaaaaat taatcaggga 360 taatcaagga aaagtaaaac ctgttgttga taagaaaaat aaaaaactgc tctgcggaaa 420 gtgcaaaacc tttgcatgtt acacagctga tataagagtg gtggagaatg ccatttcact 480 gtggttagag atgctttcag ggagtgcttc gtgactaagt tacatcccag cccgaagaag 540 tttgggagtt ttgagaagaa agctaagatc ttctgtgcca ggaaggattg cctccatgac 600 tggggaat 608 // ID KA520052; SV 1; linear; mRNA; TSA; MAM; 1243 BP. XX AC KA520052; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27063 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-1243 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-1243 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; 4aaf2df26972f472240b16f3fb288003. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..1243 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 1243 BP; 306 A; 313 C; 363 G; 261 T; 0 other; ccacctccaa agttctcctc ttgatatatg aaaagttttc taggcaaact ttatgaaact 60 actgaaagaa atctccgtat ttcttcagtg tggatctgtc aaaaggtaca caagcaaaaa 120 cttccgtgtc tgagctgctc acgaggtgcc tgggtcactc actggaggac agggcggggt 180 gcagggacta gtcaccacgt gcgaacacgt gcccctctgc cttgtcagct aggcgcacac 240 agaggcaaag gactctcaag ggggaggttt cactgagcag agggtaacag agaggaacca 300 gaaactgggc aggagacgga cgtgtgttca cctgaacact ggaggctaag agtgaaaaat 360 cagcattcag tgatcagtga ccttaaaggg ctcaactctc ccttcttggc acaagtgaca 420 gtcccaccat tctaagctcc caaattctac atcaagataa aaagattaac aaaaatagag 480 catgtagaaa ctgctgattc tgtgtgcaga ggatccacac tggcccgggg caggcagcac 540 ccctgcgtgg aggggagggt cgggggagga ggccggggcg gggacgctgc cgacccaggg 600 cctgtgggct gtggatgctg tgcttcctcc tgccaccggg cagctgggac accagggcct 660 acttggtcat cttgcggatc atgtagttga ggatgccccc attatggaaa taagtgagct 720 ccacgtcggt gtcaaacctc atgacagcct ggaagatctt cccggtatcc agctgggagc 780 tggactttca ttcgtggttt cagggtttct ggaatgctaa tagtgtatcg ttcacgccca 840 gtgagtccca gggtgtctgc attctcccca gggaggtact cgagagggat cacccccatg 900 ccgaccaagt tacttctgtg aatgcgctca taactctccg ctaggacagc tctgattccc 960 ggaaagggcc cttggcggcc cagtctcggg agctgccaga gccgtactct ttgccggcca 1020 ggacgatgag ggggaggccc gcctgctggt accgctcagc ggcgtcgaac acatcaagct 1080 gaggaggaga ggaggaaggt tttactgaca gagtaaaggc acagcgtgta gacagaggcc 1140 agtgagtcct ggggggacat gcaggagtgt ctgcagttgg caaagccagt gtaaattcaa 1200 tggcaaactc aaccaatcag ttgcctggtc tacaaatttc cag 1243 // ID KA520053; SV 1; linear; mRNA; TSA; MAM; 2267 BP. XX AC KA520053; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27064 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-2267 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-2267 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; 9645bc29f6bd50c6bb236959975bdf0d. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..2267 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 2267 BP; 552 A; 582 C; 556 G; 577 T; 0 other; gaaggcaggt ggatagtctg tggtgcctgc ttgttcaaga atttgtttaa taagcggatg 60 ttggcaaatg tcccccgcgc catgatggca tcattccctc ggcgggagcc gtaggagttg 120 aattctcgag gagtcaggta agtaccgagc agcagggctg tttcttgcga tgtttccagc 180 tggagagatg tggtctgttg ttactgaatc tcccaagttt aatagcacat aggcatccac 240 gatagactta gggggctgaa gatccaaagt caggcaaaga acagaatggt ggtgatttaa 300 tgtatgtaga tttgggattc cagcaatata gcttatctga cggggctgct aaggcattcc 360 agctctcatt cacagtctcg gggagaaact ggtagacctc cttaaacatc ccagggatca 420 cgaactgacg ctccactgcc tggatctcat ctctggtcgg ccagatatct ttcagaaata 480 cttgctgtcc cttggcattg acacctagtg ctttctcaaa gtcgatcctg atggtcccag 540 caatcgcata ggctattact aagggcggag aggctaaata gttggcccgg gtattggggt 600 ggactcgccc ttcaaagttc ctgttcccag acagtactcc aacagctacg aggtccccct 660 gtacggcttc taccacagct tccggtaagg gcccgctgtt gccgatgcag gtcatgcagc 720 catagcccac cacgtcaaac ccagacaggt aaggcatgac tccgctttcc cgcaggtagt 780 aggtgaccac accactgcca ggagacaggc tagttttgat gtaaggcttc acgctcaggc 840 ccgcatccac agccttcttc gctaacaagc ctgccacatc acagatggat tactggtgtt 900 tgtgcagcta gtaatggcag cgattaccac agaaccatga gcaagggtga acttgctgtt 960 attatagata aaggtcttat ggtcattatg atggtctgga gcaacctgga atcctttaaa 1020 tccttgcagg cagctctcaa agtccttttt catatcagac acggcaactt tgtcctgcgg 1080 ccttttgggt ccgctgcagc aaggcacgac tgttttcaag tctaactcca caacctgggt 1140 ctgggtcttg agaggagtca ctgaagtccc gaaacattcc tacagcctga agatactgtt 1200 taatatgctt tactttttct ttgtcacgac ccaggtactt gatactaact tcatcaactg 1260 ggaaaaaggc ggcagtggcc ccatactctg gacacatgtt ggcaattgta gctcggtcgg 1320 caatggacag ttgggctact cctggcccaa agaactcgac aaacttgcct actaccccaa 1380 cctggcggag gtgcttggca acaggtgagc acaatgtcag tggatgttac cagggggtgg 1440 ggatttccca ccagcctgta gccgatcacc tggggaagca ccatgctgat tggctggccc 1500 agcatcacag cttctgcttc gataccaccc acactatgca aggacaccca aaccatcaat 1560 catggtggtg tgcgaatctg tgcccacaag gctgtctggg tagtaatatc catcctgatc 1620 aaagaccact cttgccaaat actccagatt cacctggtgg atgattcctg agcccggtgg 1680 aataatcctc atgttgcgaa aggcctgaga gccccacttt tcaaatcgtt ctttatttct 1740 ttcaaattcc aagtcttgat tcttctttaa actgtctgcc aaatcaacct ggatggaatg 1800 atcaatgaca agatcagcag gacagatggg gtttattttc tctggattgc ctcctaactt 1860 tttcacagca tcacgcatgg cagcaaagtc aaccacagct ggcacacccg tgcaggatga 1920 ctcgggcagg cttaaagggc acttctatgt tcttatgctg catgaccttc caattcagga 1980 tattttcaac atcatttttc ttcaccaaaa attgatcaca gttccgaatg gctgcctcca 2040 ggagaactct gatagaaaat ggtaaggatc aatcctccaa tttattcaaa ttgaagaact 2100 tctttcctgg ttgtgcagga tccaaaggct caacaaggtg tgcaaatggg ttgctcatga 2160 ttcctgatga ccaggtgtcc cggcacggag gactccgact ggcgcgggca accaggctgg 2220 gggcgctctc tggggctgag tccagctgct ggcgccgctc cgccccc 2267 // ID KA520054; SV 1; linear; mRNA; TSA; MAM; 590 BP. XX AC KA520054; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27065 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-590 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-590 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; 2a4fae66e2bf5dd69d51002c4bf3ba96. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..590 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 590 BP; 123 A; 132 C; 99 G; 236 T; 0 other; tatgtgcttt tctttatcct tgggcgtctt gaatcatctg atgttgaagg acctcctgaa 60 ctgggtttcc attttttttg ttcttcttca attttggctt gctggaaagc tatggcctga 120 ctgaggctgt caagagcagg atcttcccct tcatcttcac tttcttctac ttcttcaatt 180 tcttcttctg gctcaggaat tttctttttt ttctttttct ctttcttctt tggaggttca 240 cgttctccaa gcatattttt aggacaggca taacttaagt gtccactttc cccacattca 300 taacacttag atttatcaaa gtagtttcgt cttcggatga actcagctgc tcttccattg 360 tcaatagcaa tgcttgcttt tatcactcta ccaaataact gtttgttgtt tattgcccgg 420 gtacagtttt gtgctttact cctcctggta tctttatctt tcattatagt aacctttaca 480 actttgccat acttggaaaa tatccgatat aagtcattgt tggtcaggga aaagggcaga 540 ttggatacat acactgtgct tttacttggg gccaatccac cactcatttc 590 // ID KA520055; SV 1; linear; mRNA; TSA; MAM; 566 BP. XX AC KA520055; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27066 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-566 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-566 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; 9cf8e4a91d0f1b211dcb3b952e048e20. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..566 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 566 BP; 167 A; 126 C; 126 G; 147 T; 0 other; aagaaaatgt ccagaaaatc gtcttggaag gcacagagag aatggaagat cagtattatt 60 ccaatgctta ctggagaagt cattcctgta atggaactgc tttcatctat gaaatcgcac 120 agtgttcctg aagaaataga tcacagttct caatgatgac gatattggtg acagttgcca 180 tgaaggcttt cttctcaagc tcacacctgc aaacttgtgg ctgctctgtt gtagtaggta 240 gcagtgcaga gaaagtaaat aagaacatta tgcctttttc tgactccagc agagagaaaa 300 tgctccagat tgtgtgaagc ctttgtacaa ggcctactaa agtggaagct ttgtgcttcc 360 cttccggcaa gtcatgtacg cgccctacca tagatgtgga cgtcaatacc gtcaagcaga 420 tgccaccctg tcacgaacac atttataatc agcgtagata catgcgatca gagctggcag 480 cgttctggcg agccacttca gaagaagacg tagctcagga taccttcatc tacacagatg 540 aaagctttac ccctgacttg tacttc 566 // ID KA520056; SV 1; linear; mRNA; TSA; MAM; 528 BP. XX AC KA520056; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27068 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-528 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-528 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; 8557e1e0291f961f32d0424e4762aafc. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..528 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 528 BP; 143 A; 108 C; 88 G; 189 T; 0 other; cttaattctc ttggaagtcg tgttgtgcca ttgctaacat ttctatactt caatctgaag 60 ccttcccaaa gctgtctatg ccactgtgcg ttatagatat aaccagcggt gaacatgtaa 120 gaaatcgctg catgctttct ccatactata ctgtgtcttt gctaactcct gatttgattt 180 tatacgttta taaattttct attatatttg ctcatactaa atccttattt atattctgca 240 acaccatttt gaccgatctt cttgaatgtc ctactgttag ctttgtaaga ttacactgag 300 ttgttttaat tccctttttc attggtgaag cactagggga catggataat ttctctcctc 360 atttgtggtg attatgtcat tctggtcatt gctggaagca tcacttccta tggtctctac 420 ccttatatca cttccacatc ccatgggtat cacactgtga ataaaagaaa tatcatagga 480 aaagtacaag aaatgagtcc aagggcaaaa tcactgaaag gagtctga 528 // ID KA520057; SV 1; linear; mRNA; TSA; MAM; 2645 BP. XX AC KA520057; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27069 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-2645 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-2645 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; 8f74ffd3c3bd416794dcbfe7d729f6a0. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..2645 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 2645 BP; 632 A; 692 C; 656 G; 665 T; 0 other; cctctggaag ggtacagggc cgacccccgg cgcctggcaa tgaagttccc ctggaaatca 60 ttcaagagga agatggaaag ggctatctaa aagagattga gagctgcaga ccacaagact 120 ggggccagag ggctggcagt ggaaacccct gttgggttgc gatctctcac tgaaaagtga 180 aggagcagac catgtccata gccttgaagc aggtgttcaa caaggacaag accttccggc 240 caaagaggaa atttgaacct ggcacgcaga ggttcgaact ccacaaacgg gctcaggcct 300 ccctcaactc gggcgtggac ctgaaggcag ccgttcagct gcccagtggg gaggaccaga 360 atgactgggt ggcggtgcac gtggtggact tcttcaatcg catcaacctc atctacggca 420 ccatctgtga gttctgcacc gaacggacct gccctgtgat gtcagggggc cccaaatacg 480 aataccggtg gcaggatgac ctcaagtaca agaagccgac tgccctgcca gccccccagt 540 acatgaacct tctcatggat tggatcgagg tccagatcaa caatgaagac atctttccaa 600 cgtgtgtggc agcggagaag tccttacttc acttcttgcg gagaagtcct tacttcactt 660 cttgtcccaa agaacttcct gcagatctgc aagaagatcc tgtgccgcct cttccgggtc 720 tttgtccatg tctacatcca ccactttgac cgggtcattg tgatgggtgc cgaggcccac 780 gtcaacacct gctacaaaca cttctattac ttcgtcacgg agatgaacct catagatcgc 840 aaggagctgg agcccttgga gcaggatgtg tcactaacgg ccccatctta ccctccggaa 900 gaaagaggaa agctgttttc ctcctggcgg ccaggcgggc aggagggaga cttcccaggc 960 tggagaggca cgcctactgc caggaacagg ccagctggag accagcggtg actccggaga 1020 gtggttccct actcacctcg tgtgctccca accctctgag tgctgctagc gtgacccgtg 1080 gacccgccgg gagggaagga ccacccctcg cccatcctgg agaaaggatg cccctgcact 1140 taacacgcac agcgcagttg tgcagttctg cctgtgacct gacacctaag ctttgctgaa 1200 attcaggttt tgcgcccaag gtccttattc ctacttactt acctgtctcc tcagccggct 1260 gccttttctg taacgtgtgt tctaagtacc cagtgaattt tggaactctg gatacacaag 1320 cagtttttct ctaacaagcc ttcttgtgcc gtcttggcag acttcggccc ttgatgctgt 1380 ggtctcggct gggaggtctg acgcccgccg gctcacagca tctgcgcttc cccctaagca 1440 gttttaccag ggaccattcc gcggggcggc ttgtctctgc cccaaacagg gtctgcacac 1500 tttcactgca gggaagagac tggtctcgag cctaaggctg gatagttacc agttcaccct 1560 gaacagagta tcttttttta aaaaccacgc cattccttga aataaaggaa gttataaatg 1620 accgagaatg atcagcagaa gcactgagcc ggattagtgc agtgtttgtt cgttattaaa 1680 gggtgtggtg gctgtctcta cgttaatact gagatttcag ttgggggaag aaaaaagtac 1740 aacgggtaat ttgatgcctg tagctcagac acccagccca ttgacttgtt atcttcccaa 1800 ccggccctct gagcttctag atccagtcga tgttttcttc ctgttcctcc acactcccac 1860 ctcctccgcc cattacgttt gacattacaa aacaaaatta atttctgccc gggtgatgct 1920 cctgccatgg ttgccaaggt aacaggcaag ctggagccgt cttccttctt ccatccttgc 1980 caatgtttgg atcccagcag acagactcat tctgtgctgc atcctgcctt ttgaaagcta 2040 cctgactttt cgctgaagta atgttgtctt cactgattca ttcgcaaaac tgtggtggtc 2100 ccaagagtct gtaactaggg ggtgatgaca cttccggtga ttatttgaat ttgacaaaat 2160 agcagttggt ggagggaagt agatgagaat gtattagtga attttaatgt aatactgatt 2220 aaagaataac ttaacaactc tgactttgtc tcattacatg tgacatgtga aagccatctg 2280 gggctgccac aagagcctgg aaaggcatga aacctttctt tggtccaaac taagaaagga 2340 ctgactctct gggcactgtg acattctgtg ttgacctaac ccagcaaacc aacccttgct 2400 ctgtattttg tcaaatgccg ttcaaatgct gctacctctc ttcatcttgt tgtgttctga 2460 tcaagaacaa acataccatt ttttggtttg gttttgttgg cttcctaagt aactttgaga 2520 ggacaagata gagattttct cagcatcatt tctgctttaa aggatccaga gaacagatga 2580 atgagcccgt cttcctgacc tatgcgctat gcagtgcgtg ccacgtggca gtgttgagca 2640 gtggg 2645 // ID KA520058; SV 1; linear; mRNA; TSA; MAM; 576 BP. XX AC KA520058; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27070 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-576 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-576 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; fc16d5e1edfd80a16afed0bc2d112dd2. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..576 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 576 BP; 187 A; 108 C; 105 G; 176 T; 0 other; tgtctgcgta ttgccaacac attagaggat gataaagtgt tttcttgaaa gtataataga 60 gacggttggt aatacttatg agacacattc ctagacaaaa agtgggtagg caagacattt 120 attcacttac tatatgatct cagtatagca tgtgcctaca atataaatgg taaactcaca 180 cctgatcaaa actagaactt tttacaacgt gcaagacagg tagggatgtt aatctgctat 240 gatacatgtc acatgtctcc caaatataac tacaagcttc ctgttttaat ttcttaacaa 300 acacatcgat gttatccgag aaactaaaac ctattagctt atcacactaa cacttcttaa 360 cgttcttagg cttctaagga atgagttagg actgatttgt tggctctgga aacacatgaa 420 aaagttgtca aattaacaaa ggaatcagga tggcttctac aggtgagggg gaatgtttag 480 agataatcac ttaggttaac atttgagaga cctaaatcca tgtcctgtta gaactcatac 540 ctttcccctc ctttttctca cctgtgctga caggtt 576 // ID KA520059; SV 1; linear; mRNA; TSA; MAM; 1678 BP. XX AC KA520059; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27071 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-1678 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-1678 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; ae0c98335f72110b75f5059d01e3368d. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..1678 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 1678 BP; 378 A; 350 C; 283 G; 667 T; 0 other; aattttttaa tggcgtgtac aaagtttagc agcaagagaa catttctata gagacttgca 60 gttggttcag actcagtttc tgctcatgct atgcagagca tccacgatgt ttttattata 120 ctctgcaatc tgcttggaca cattcttcat aatcggccgg taatcactct cttgactctt 180 ggttgctatg aataaaatta ttttgctcat ggtgttgcca cttcctctcc aaatttgtaa 240 gtcgttttct tgcagttgtg tttttagtgt ctcccattct gtgcttagtt tctccattat 300 ttttttaaag gcatttctgc gagttgataa tactgttttc tcctgatgta attttcacct 360 gatgatttgc caaatcatta tatgtctcta gatcagttat catttgctta attttatttt 420 ttagagactg ttgttcctca gtcattttac tttccagaag ctccattttt tgtagatcca 480 actgtagcct ctgactgtcc gtactctgtg atttctgcat ttcagtagat ttaaaattga 540 gatcatcctg catcattttc agctcttgat tggtgataga ggatatctgt ttcatacgat 600 ttatattgct ccaaaagcga aacaatgctg gcttctatct gtgccttcct ttccagttcc 660 tggttcttag tgtcctcaaa agtctcaata aaagctccct cttttttagc tccttgtact 720 tctgattcat ttcactaaat ccatgtcaag ttgtctaatt tcttcattaa attgatttat 780 tttttctttt atatctgtta actggctatt tcctgattat cttctttaac taatctctct 840 ctttcttcca ttggagatcc catatttttg tcttctgcaa tcatctgatc tcgatgggac 900 tccaactcat aaagtttttc atgtaacaat acagcctcct gttttacctg ggagtgtgtg 960 atttctcttt tttcatattc agtgaatcta gctgttgctg aagtgtatct aattctcatt 1020 tgtggttttc atttctatat acttgacttg tttttcagga gacatatttt tgataatacc 1080 ctctgctgct tgtttttcct gttcaatttc ttcttctaca cttctaattt gtttttcctt 1140 cctgtgaata taatgtccat actttgtgtt tctcgatcat tttgagcttt aagttcatta 1200 cttcttccat ttcagtattg gtattaagtt tatctgccaa gctagttgtc cttgaaactc 1260 ttttatttca acagctaaag tctcagctac aaatacactg aattctcttg attgtacatt 1320 tctatttctt tctggagttt attgatttct gtattttact tgatagtaag atttgtctaa 1380 aatttgcctc tggggacttt catcccactc aaaccttgct gtgttacagg acgatcagca 1440 actttgattt gagaagacag aactcctcct gtccctatgg gaccaccacg agagcctggt 1500 cttgctgttc caggtggcat cgaatatttc ctgatggggg tcgtattcca gaaggaggcc 1560 ttcctgtcaa tccaatccca cctcgagaaa cagggcgaac tgctgaaggt ttgtggttca 1620 gtttaaccag aggggtgcga aaggagcgcg gtcgcaccac ccaggggcac tcgaactt 1678 // ID KA520060; SV 1; linear; mRNA; TSA; MAM; 2573 BP. XX AC KA520060; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27072 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-2573 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-2573 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; 696a37ba15a49a414f53c15f5ba736e7. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..2573 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 2573 BP; 696 A; 570 C; 624 G; 683 T; 0 other; ggacgcacac actctgcgtc atggcgggct gaggccgatg atgaattccg gtgtgcatgt 60 cagggttgct gtgtcactcg gcccgctcgg cgcgcccctt ccctgccgcc cttccgcacc 120 ggcccttggg ttcttccggg cccggcgtcc ctcacctgca ggcgctctcc agcagcccgc 180 cgggcctcgc cgactgaccg atctcgcgcg gtgccccggc accgggcgcc ggacccacca 240 gggccatggc gagcggcccc tgcaggtacc ggctgagctg ctcgctctcg ggccacgagc 300 tggacgtgag gggcctggta tgctgcctct atccaccggg ggcttttgtg tccgtgtccc 360 gagatcgcac cacccgcctc tgggtcccaa acaggtgagc gccccggctt tacagaaatg 420 cactgtatga gtggccactc caattttgtc tcttgtgtat gcatcatacc ttcaagtgac 480 gtgtaccctc atggactaat cgccactgga ggaaatgacc acaatatttg cgttttttct 540 cttgagagtc cagcaccact ttatgtacta aaaggtcaca aaaacactgt tttcatctgg 600 caagtttggg acattactta gtggctcgtg ggacacaact gctaaagtct ggctgaatga 660 caaatgcatg atgaccttac agccttacag ggtcatacag ctgcagtttg ggcagtaaag 720 atattacctg aacagggctt aatgttaact ggatcagcag acaagactat taaactgtgg 780 aaagctggaa gatgcgagag gactttttct gtgtgtaaga ggcttggcaa ttttgagtga 840 aacagaattt ctctcctgtg caaatgatgc tagtattaga aggtggcaaa tcactggcga 900 gtgtcttgaa gtattttatg gtcatacaaa ttatatttat agcatatctg tctttccaaa 960 ttgtaaagac agcagaagac agatctctga gaatctggaa acatggggaa tgtgctcaaa 1020 caatccgact tccagctcag tctatatggt gctgctgtgt gctggacaat ggtgacattg 1080 tggttggtgc gagtgattta gagtgtttac agaatcagag gatcggacag caagtgctga 1140 ggaaatcaag gcttttgaaa gagaactctc tcaagcaacc attgattcca aaactggtga 1200 cttaggggac attaatgctg aacaacttcc tgggagggaa catctgaatg aacctgggga 1260 cagactcgtc taatcagaga tggagagaaa gtcgaagcct accagtggag tgttagtgaa 1320 aggaggtgga taaaaattgg tgatgttgtt ggctcctctg gtgctagtca gcaaacgtct 1380 ggaaaagttt tatatgaagg gaaagaatgt tttctcaatt gatgtcaatg aaggtggacc 1440 atcatataaa ttgccatata atatcactga tgatccctgg ttagctgcat acaacttctt 1500 acagaagaat gatttgaatc ctatgttttt ggatcaggtg gctaaattta ttattgataa 1560 cacaaaaggt caaatgttgg gactcggaaa caccagtttt tcagatcctt ttacagtacg 1620 ttccaggctc ttcatcagga tcttctaaca cccttcctgc agcggatcct tttacaggta 1680 tgtaccgggc tctgcaagta tgggaactac catggctgga gttgatccat ttacaggaaa 1740 taccagtcag ctgcatctaa gacagtgaat atttattttc ctaaaaaaga ggctgtcact 1800 tttgaccaag caaaccctac acaaatatta ggaacttaat ggaactgcat ctgaagagaa 1860 gaagttaact gaggatgact tggtacttct tgaaaagata ctgtctctaa tatgtaataa 1920 ttcttcagaa aaacccacag cccagcaact tcagatttta tggaaagctg ttaactggcc 1980 tgaagcctgc ccttgacatt cttcggctgt caattaaaca tcccagtgtg aatgagaact 2040 tctgcaacga aaaagaaggg actcggttca gcagccatct cgtcagtctt ctgaacccca 2100 gaggaaggcc agcaaaccag ctgcttgctc tgaggacttt ttgcaattgt tttgttggcc 2160 aggcaggaca aaagctcatg atgtcccaga gggaatcact gttgtcccat gcaatagaac 2220 tgaaatcagg gagcaataag aacattcaca ttgctctggc cacgttgacc ctgaactatt 2280 ctgtgtgttt tcataaagac cataacattg aagggaaagc tcagtgcttg tcagtaatta 2340 gcacagtctt agaagttgta caagacctcg aagccacttt tagacttctt gtggctcttg 2400 ggacacttat cagtgatgat tccaatgctg tacaattagc caagtcttta ggtgttgatt 2460 ctcaaataaa aaagtatgcc tcagtatcag agccagctaa agtaagtgaa tgctgtagac 2520 ttatcctaaa tttactgtaa cagtgggtta ggggactgag attttaaatt gag 2573 // ID KA520061; SV 1; linear; mRNA; TSA; MAM; 363 BP. XX AC KA520061; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27073 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-363 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-363 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; 592f30759a40ddc900c9471f0966924d. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..363 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 363 BP; 76 A; 88 C; 139 G; 60 T; 0 other; ctggagtggg atcatgacgg ggaagaagtc ttccagggag aagcggcgca aacgaagcgg 60 tcagccccgc cgtaggcggc agtggcagtg gaagcaccag cggctgcggg agcgcaagcg 120 gttgcgggag cgtcacctgc tgcgggaaca ctagcgtgag tggaagtgtc accggcggtg 180 ggagcggcgg cagttgctgg ggtggcagca gcgtggagcg cggtgagcgt cggaagcgga 240 gaagcactga ctcatcttcc agcgtctccg gctccctgca gcaggctttt gccacctctg 300 gaaaaagagt tattcttggc agagcacagt gaccttgaag aaggtggatt agacctgact 360 gtg 363 // ID KA520062; SV 1; linear; mRNA; TSA; MAM; 710 BP. XX AC KA520062; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27074 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-710 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-710 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; bdd5fe26bdbfb1891429740bb7f164bf. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..710 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 710 BP; 223 A; 131 C; 163 G; 193 T; 0 other; agaagaaatt aaaagacttt gccaggaaca gctagagctc ctgtctgaaa aaaaaatttt 60 gaagattctt gaggtggact ctgaaatgga agaagaagca gatgatggct ccaagcctga 120 tttagttaat catgtagatt ctacttcatc tctgagagag aacaagcaac ctgaaggttt 180 ggaattaaaa caaggatagc gatgtactca gtataaatgc agacgcttat gacagcgaca 240 tagaaggccc ctgtaatgaa gaagcagctg ctcctgaggt cccagaaaat acagtccaga 300 gtgaagctgg tcagatagat gacctggaga aagacattga gaaaagcgtg aacgagattc 360 tggggcttgc agagtccagt ccaaaggagc ccaaagccgc caccctgact gttcctccgc 420 cagaagatgt tcagccttcc gcacagcagc tggagctgct cgaacttgaa atgagggcca 480 gagctattaa agccctgatg aaagctggtg atataaaaaa gccagcctag tttatttaat 540 gtgtctgaat attggatgtg tttgaacagt gccacgctat atcattttgt atctaaagtt 600 tatctggggg tcttacctga tatttctcat ataactctta ctagataaac tcatcttagg 660 tctaaaatac atgttattgt tgttactttt gtattatgta gttgtttttt 710 // ID KA520063; SV 1; linear; mRNA; TSA; MAM; 3497 BP. XX AC KA520063; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27075 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-3497 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-3497 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; 7843b2b83c7c5a0a5fb4395140cc9415. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..3497 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 3497 BP; 823 A; 898 C; 868 G; 908 T; 0 other; tccagcacat tcttactcaa aatagtatat acagtcctag tcagaaggtg ctacagactc 60 acacacgggt cttacagtca aagtcccagg caagcgacaa tctatataca tgtccatttt 120 ctgtcacctc tcggcagagg cttgctcgct gagcatcaag gcatgaaggg tctctcacac 180 cggtgaaggg gaaacagaat atacagatgg aagtggtcag tcctaggctg cttcttctgc 240 agaacagtcg attcccgcgt aggtgaactt ctcgtaaagt gtggtgttca cgtaggtaac 300 attctgttta aggacaccag gatctgggca aatgagggcc tttcataagg cttctcccgc 360 cagcactgtc tcatgagatc ataccacagt ttagcggctt ctccagtctg taaccctggg 420 gcagcttctc gtagagttct gcacacgtca tcccacagta aggggtgccg cctcccatag 480 taacacgcca taggaccatt cgtatacacg ctgtaattta gtgactcgat cgccatccag 540 cgcacaggga gtcttcccaa catacacttc ttgacctcgg gataatccaa aatcggctat 600 cttggctacg tagttttcac caactaaaat gttcctggca gctaggtccc tgtgaataaa 660 caggtagtcc ataccccggg ccacatctgc tgcgaaatgg aggagctgct gggaggagag 720 cgtggaggca gtgctgttgg cgatggcaaa cgcggggtcc gtctccagca ctcggctctt 780 tcgcaggaag tccaggaggt tgccgtgggg ggcgtactca atggccaggt acaggtagcc 840 accgctccca agagattgat gatgtttggg tggtgtccaa gtttacaaag aacctccagt 900 tccccagcaa agtccctgtg gtcatctttg gaagcgtatt cttgatggca gcgtccatcc 960 gtaacccatc cttcttgatg cgagccttaa gaacctggcc aaaattaccc tccccaatca 1020 catcttgaaa tttgatgtca ttccagtcaa gcactggata aatggtagga tctgggttgt 1080 ttttggcctt cctgttcagg gcaagagttc ctgagttgaa ctgcacagct ggttcttccc 1140 tgcttgggcc attctccttt ggacgtttgc cctcttcagc tgcagcatga tcagaaaggc 1200 caacagcacc gtcaggcagg tcattcccgc tgagccaagg atggcgatga gcagcatctt 1260 cctgcctccg aggtctgctg gtgaagagtc gtcagttcat gagaagaggt tggattgctt 1320 gagcctatat tgttctctgc aaagatgtcc acctggtaaa ctgtctgggg ctcaaggccc 1380 ttgagctgat actgggtaat ggtggcattc ttgatcttca cgtcaatgtg ctggtcttca 1440 ttcttgccct gaaccttgta acggatgata atagcagaaa tagaatagcc atctaggatg 1500 gtccaagaga tcacagctga agagtctgtg atgttgaaaa tcttgatgtt ttctggttga 1560 ggagggacaa ccacgcgatg agatcttcgc tccattcccc ctgggccttg gtgttgactc 1620 tggctcggac tttgtactgc tccctggggt gtaagttgtt aagcagcact gaagtcaagt 1680 tgcctggcac tttaatattc tgctgatcac tattcatttg cacagatctc ctctcaactt 1740 caacataaaa gtcatcttct gagcttggga atattggttg ccaggtcaaa tttagagtgg 1800 tctgactttt tggtaggaga ctgagacccc ttggaggagg aagaccgatg tgaatctcct 1860 cacagggcca ggatggcctt ctccgccctc tccacgccgg accagctgca cgcagagctc 1920 gtattccgtc cgaggctcca aatagttgag ggtaacaatc tcatttgtca ccaagcctca 1980 tagtgattaa caggtttgta cagaagcttc ttggatttga ttggtccatc cccaaagtaa 2040 ggctcagagc tgatgttgat gacagcaaag ttgtgtccag tgtcgatcac ctttggggca 2100 ttcaagggct ttggaagaac gttgaaaggc ttttccacca tcccagacac tgtgttcaca 2160 ctgcagaccc agactcctga gtcagggggt aggatccggt tgatggtgaa gatagccacg 2220 gagagatgac ccgtgtggtt aaagtctttt ggacccatct ggcttcacca gggtcatttc 2280 ttcattagca ggtcggggcc agccagatgc tttgcagatg gggttgaatt taccactgtt 2340 cacttctata tgatctggca aatcctctat ctttggagtc atccttggca cacctggagc 2400 ccttggcgtc ctggagagca gaggcatcct tggaaccgat cgcacttctc cccattggtg 2460 caactgcacc tgagcttaca gtctggtcca taataaccag gctggcacgc ttcagaccct 2520 tccagcctgt ggcacaggaa cacccatagg ggtctgggag acagaacacg aaggacttgc 2580 atccctccgg ctcactacac ctttctttac aagttctgcc aaatgtgtgc ggttcacacg 2640 cctctcccca taaacccagg agggcaaatg cattccccag tatcttcatg gcagatccca 2700 ttgttcatac aagcagtgca gatgcggtta cattcaggtc cccacttctg agcttcacat 2760 ccctggtgaa ggctgaggtg aagaggtttc ctcctatgta cctggccgag tacacgccag 2820 catcctgggg ctgagcgtga ggcagatgca cttccaaaat gtcagggact tcgtgccggg 2880 gcaccgagtg gatgaaggaa ccactgcatc ttcttcttta atcaatacct ttttgaaaga 2940 tatgttcaca ttatctcccc tgtccacagt catagttaaa gtagctggta gaaaggaagc 3000 ttcatggtcc gtatccttat tgcctgtcct cgaactcgcc cttcacagaa ataagcacca 3060 ttgattttac tagccttttc tctcttccaa acaacttttt tagcccattc tctggtcgcg 3120 tcttgagtca cttccagtgg atcctggtgc tggttcatta aggcttcaaa gtcccttccg 3180 atggtgatgg gctcatgggg gtgccatcca gaggcaatgc aagtgaggga tgtctcagca 3240 tcagatacaa gaggtaggga attgatcagg atcaggtcca tggcaccgtc cactgttgca 3300 gaaaggagct gactccgcag agaactaagc cggctaaaga atccatgctt ccccaaatct 3360 ctccatccag tttccgcgga catgcatgag gtcccaagga tcctttcaaa cacccagagg 3420 tttgtgactt tccattcgcc tgtcctccta ggtcttgttt acaagtcaga ggcaagaagg 3480 aacagcacag aagcggg 3497 // ID KA520064; SV 1; linear; mRNA; TSA; MAM; 1106 BP. XX AC KA520064; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27077 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-1106 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-1106 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; 6cf43bc8fd476d7695133f5c77bab550. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..1106 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 1106 BP; 232 A; 300 C; 403 G; 171 T; 0 other; gagagcttta ttggacacgg agcggcacca gggcccacgg gcccggcaca ctggcccgcg 60 gcccggggca atcagggctg caggaggtgg ttccatccaa cgggtctcag ggtaaacggt 120 aacacaacgc aacaacagtc tacctaaggt tactatagag ttgggagacg gcgagctgct 180 ccacagacgt atgaacaggt caaatcttta taaataaaca tccagtgaag agaaaatgac 240 aactctaatt cagagcactc gagggcagag gggcgggggc ggccggaggc cggcgtcctc 300 actggtcagg gccggggtgg ggactggtgg gcccagatgt ccacagcacg gggcggggcg 360 gcaggggcga ggctggggca acagacggtg ggcactggga cactgcgcat ttacaagacc 420 gactactggc aggcggctgc cccgtgcgtg tgtcaggctg ttcgtcgagg aatgaggagg 480 gggtggtctt gacatcaatt gtattctgtg gctggcggcc cgcagggcta ctttgtggag 540 aggataaggg cgactatgag accgtagagg ccgagcacct cggcgaagat gaggatgagg 600 atcatgccca cgaagagccg cggctgctgg gcggtgccac gcacgcctgc gtcccccaca 660 atgccgatgg cgaagcctgc cgccagcccg ctcaggccca cgctcaggcc cgcgcccagc 720 tgaaggaaac tcctgtagag actgatgccg tcattcaggg agttggcgat gaggactgcc 780 accaccagac catagatggc gatgatcccc gccatgacca ctgggatgat ggacttcatg 840 atcatctctg gccgcatgac agacatggct gcgatgcccg tgccgctctt ggctgtaccg 900 taggcggcgc ccagggcgct gaagaccatg gcggctgagg cacccatgac cgcgaaaaag 960 gaagcgtact cggggggttc ttggtatcgg acatgtctgc gggtggggag ggggcgagtt 1020 cagcggaccg aggccggggc gaggtcgggc cgggcgcggc gggcggcggg ctgcgcgaag 1080 cgagctgtcc gaaggctgcg aaagcg 1106 // ID KA520065; SV 1; linear; mRNA; TSA; MAM; 1121 BP. XX AC KA520065; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27078 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-1121 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-1121 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; 365a43280f4b618e43d1397778a2cb2c. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..1121 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 1121 BP; 211 A; 318 C; 345 G; 247 T; 0 other; cgacagcagc tggaggagcg gttcgccgac ttggcggcga gccatctgga ggccatctgc 60 gcgcgggacg agcgggaccg gcagaacgcg aggctgcgcg aggagaacgc ccggctgagg 120 ctcgagaacc ggcggctgaa gcgcgagaac cgcagcctct ttcgtcaggc cttgcggttc 180 cctggcgagg gcagcgacgg ggcgtccgcg gactcggcga gggcgacccc ggtcccggag 240 gaggccagca tgaaccggag ggcgaggggc ggcgggacgc cccggggagc cccagggccc 300 ttagaccccg gctcgagaag ctggaagcca tgtaccgccg ggccttgctg cagctgcacc 360 tcgaacagag ggggccgcga ccgcgtgggg acaaggagga gccctctccg ggcagcccaa 420 attcaggcct ccaagtccca gagccagagc catccgagcc ctggccatag cccgaggccg 480 cagcctgcag aggcggagcc tcgtgcaggc tcctcctccg ttcagtgctg cccccacctg 540 gcgcacgcgt gagccgcgcg ctcccgcctc ccgcctggcc cgggcgagct ttctacccgc 600 agaggttgtg gagaggttgg ggagggcgtg gggctgagtc ctgccatgta cagagcacat 660 gtctctggcg cctgctagtt cagtggagac ctagttccgg aggggcgggc tttaaaacag 720 cgtgaagtga gtggcagtcg acccttccta atgcctgaac ttttatgggt gttgtaagga 780 cctgtggtat tttttcctct gttttggttc ttccagggat gatagtacat tttgatttgg 840 ctgggtttgt ttttcatcgt ctcctaaagc ctccagctag tctctctcat gtggccaaca 900 ttttaagtgt ttggtttgtt tttataagtc ggtgttgtga aatatcaccg tttaatgcac 960 aaagtgatgt ttataattta gaaactcatg tctgccctgg ttctagtcct tatgcatcta 1020 atatatactg atttgttaat cccactcccc catcatcccc ctgccttggg aaattttaaa 1080 ctatcttcct ataagtaatc cttcgaattg ataaataaat c 1121 // ID KA520066; SV 1; linear; mRNA; TSA; MAM; 1414 BP. XX AC KA520066; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27080 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-1414 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-1414 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; 2a89033a1443a49e096ebc39d2283da0. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..1414 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 1414 BP; 337 A; 374 C; 401 G; 302 T; 0 other; aatcaccatg gcggctggga ccctgtacac atatcctgaa aactggaggg ccttcaaggc 60 cctcattgcc gctcagtaca gcggggctca ggtccgcgtg ctctccgcac caccccactt 120 ccattttggc caaaccaacc gcacccccga atttctccgt aaatttcctg ctggcaaggt 180 tccagccttt gagggtgacg atggattctg tgtgttcgag agcaatgcca ttgcctacta 240 tgtgagcaac gaggagctgc ggggaagtac tcccgaggca gcagcgcagg tggtgcagtg 300 ggtgagcttt gctgatagcg acatagtgcc accagccagc acctgggtgt tccctacctt 360 gggcatcatg caccacaaca agcaggccac agagaatgca aaggaggagg tgaggcgaat 420 tctggggctg ctggatgctc acttgaagac aagaactttt ctggtgggcg aacgcgtgac 480 gctggctgac atcacagttg tctgcaccct gttgtggctt tacaaacagg ttctggagcc 540 ttctttccgc caggccttcc ctaataccaa ccgctggttc ctcacctgca ttaaccagcc 600 ccagttccgg gctgtcttgg gagaggtgaa actctgtgag aaaatggccc agtttgatgc 660 taaaaagttt gcagagagcc agcctaaaaa ggacacccca cggaaggaga aaggttctcg 720 agaagagaag ccaaagcccc aggcggagcg gaaggagggc aaagaggaga agaaggcggc 780 tgcccccgct cctgaggagg agctggatga atgtgagcag gcgctggctg ccgagccgaa 840 ggccaaggat ccctttgccc atctgcccaa gagtaccttt gtgttggatg aatttaagcg 900 caagtactcc aacgaggata cgctgtccgt ggcgctgccg tacttttggg atcactttga 960 taaggatggc tggtccctgt ggtactctga gtatcgcttc cctgaagagc tcacccagac 1020 cttcatgagt tgcaacctca tcactggaat gttccagcga ttggacaaac tgaggaagaa 1080 tgcctttgcc agtgtcattc tctttggaac caacaatagc agctccattt ctggggtctg 1140 ggtctttcga ggccaggagc ttgcttttcc gctgagtcca gattggcagg tggactacga 1200 gtcatacaca tggcggaaac tggatcccgg cagcgaggag acccagacgc tggttcgaga 1260 atacttttgc tgggaagggg ccttccagca tgtgggcaaa gccttcaatc agggcaagat 1320 cttcaagtga acacctcttg ccatcgccca gccgcctgca cctgcccttc agggagaatg 1380 ggggtcatta aaggaaactg aacattgaaa aaaa 1414 // ID KA520067; SV 1; linear; mRNA; TSA; MAM; 460 BP. XX AC KA520067; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27081 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-460 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-460 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; fe382b5926da5ec0cedfff32dad5f8e8. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..460 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 460 BP; 108 A; 109 C; 109 G; 134 T; 0 other; ttaatgtctt ggtaacataa cagaaaactg ggccatttta gggtttctga ccattccatg 60 gatcctattt gaggtatggt agtgagaagt aagcttttgg ctttattggc attttctttc 120 agggtcttta agacccggtc cactgaaact ccttccagca atcataatct gttgccatgg 180 cgatacttgc gtagcaaatt cccgcctcct tagcaagaac cacctctgga actgtggtca 240 tgttgataac atctgccccc caggtctgga acatgatgct ttctgcccgg gagctgaaac 300 gaggtccctc aatggtgatc actgtccctt ttgagtggca ccggagtcct agctttttag 360 cagtctctat gaggacgggc agaatggctc agccattgga atatggcaca ctcctctggc 420 acaggaatga tttccatcat agaaggtctg aagccttgtg 460 // ID KA520068; SV 1; linear; mRNA; TSA; MAM; 660 BP. XX AC KA520068; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27082 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-660 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-660 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; c1c98e1c4af19960acf0d1b5491b146f. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..660 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 660 BP; 212 A; 137 C; 127 G; 184 T; 0 other; gaagtacctc ttcagattct tcagaatcac tcacttcaga ggactcagat gattccattt 60 ctgataaggc cccattaagg tctccccttg tggttctcaa ccagtaggga tgtctctggt 120 attgaagagg ctgaagatat actttagtac tgcctgcaag acaacagtgt cctaggcttt 180 ctatagctgg cttcttaggg aatctgaagt tggtgctgtc cttcagacat agccaaaagg 240 acattttctg atgtgatgcc aaaagtacat cttccacttg ctcagatcac agcctcaaga 300 cggatcacac aaagctcagg atgcacgtgg gctggagcag caccacagca accacctcga 360 atcaatcaaa tagttatgtc agaatgactg agttgagaga ctgaacttaa gaacctacag 420 ctttgttgag cagtgaaaag tagcagagcc taaatttact gatcaaaagc aattctctga 480 gacttgaact ctgctaaata atctgtataa aggcaactct acagaaaaca atatacaagc 540 aggaaaagtt aagtttcatc tatagtaaca attcagtcaa atgacatatt tggttgttat 600 taataattta atgtttaagt ccttatctac atcactgcag taagactaca tagacattta 660 // ID KA520069; SV 1; linear; mRNA; TSA; MAM; 766 BP. XX AC KA520069; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27083 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-766 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-766 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; 855151b09621001083f89e717ef1d7f2. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..766 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 766 BP; 218 A; 180 C; 141 G; 227 T; 0 other; tgctgaaaga ggtgattctc tggaaggtga cccaggattt tcttcaggtg gaaaaactgt 60 gagagtacaa gctcgaatgc caccaagtga ctctggaagg tcaaaaactt tgtgccactc 120 atccttttct gggtcatatt tctggacaat ttctaccata caacgattat tccaagaata 180 tccacctaca acatagattt tattttcaaa gacagcaact ccaacatcac tttgacctct 240 taacatggca gcaattggtg tccactggtc aagggttggc gaatagtatt cacagcttag 300 aacatcatca taatcacttg ttcctctgaa gtgattgcca ccaatgacat agagcttgtc 360 tccaactgta cacatgcaat gcagacctct gactgtagtc attggagcct tctgtgtcca 420 tttgtctgta tcagggtcaa aacacatgag ctcattttgg aaagtgtcat gagtaattcc 480 tcctgaaata tacattaagc ctccatacac tgttccagca tggccatagt ggggttcact 540 cattttcgca acatagctcc actcattcat tcttggattg taacattcta cagtggccag 600 ctcaccagct gcacttcgcc caccaacagc atacaaatgt cctttgaggg cgctcaagtg 660 aaaaaatgtg cgcttttcat ttaatgatgc aacctgcatc catttattat atcgaggatc 720 aaatctgaaa actgtatcaa cagcagtttt tccttttgta tcgtaa 766 // ID KA520070; SV 1; linear; mRNA; TSA; MAM; 1541 BP. XX AC KA520070; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27084 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-1541 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-1541 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; 6b9b33dbe9364debec51c1337b8ce6dd. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..1541 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 1541 BP; 439 A; 398 C; 333 G; 371 T; 0 other; attactttga ccaccaacta cataaagaaa gtttccaatg acagcaatgc catgctgata 60 acgaggagca tccatggggg ctaaagatct ccactcttga gccctctcat catacatccg 120 taattcttta ctgacaacca gctgctgcct caaaactcct cctaaggtaa ccaagtgtgt 180 cgaatcagat cgaatggcgg ttctatctga ctgcatcact ggctgcatat atggcatcat 240 ttggtaattg ctagcttcca aaagcaaatt cacacatgta ttgtctgttc tcataaaatc 300 tactgtctgc acataattga tgagatcctg tggtgtcatc agtggaaatc gaatattctt 360 cattaattca gcataatcca tccgaggatc ttccaacctt agccagcgac aggcagcctt 420 aaagagctca agttcagtac agtgcttaag gctattgcta gaaagcacaa aggcaagccg 480 ttcaaaaggg agttttagaa actctccagt gctcagtaag gcaggaaaat tcttcagaat 540 gaaattattg acatatttat ctacttctat aagattgtag gtgttagcaa ttcgtccaac 600 ttcaacacag ttatctaaag agactcctga aataagaaac actttacaga agtctaaaac 660 aggcaagatt tgcaaaaagc tggcagcttc aagagtgtcc tgaagattgt ccatattaag 720 agaaagcttt gcagtataaa taaaatcaat aattttcttc agaccaactt tgttcacccc 780 gtgaagctta atgcacatta aatcctgttc tttcattcca cctgtgaaca tggccttgaa 840 gtaatcactc gcggacgcca tcatagctct atgaacaggg aagatttcat ctccatcacc 900 tggtaccaga gtcacatcac aaagcaatcc ttctattcta agttgatcaa aaccttgcaa 960 taccaccgaa ctgtgagtat tgctggtaaa aaaacgtgtg gttcctgcct tgcaaggctg 1020 taaatgggcg gagacgccca tttcaccgtt accaagagac actttcatgt cctcttgcac 1080 aaagatgtat gccggacaaa gaggttacga ccggaaagct ttaaaggaaa cgaggatgtc 1140 ccaagagaaa gaaagctcgc tttccttatc aagggcaaac tgtcactgca gcacgcctca 1200 gaacacaaga gtcccacatt gaaaaccgtt ctgcagctgg ccccagaggg ctgtggacct 1260 caaatctgac tactgtgtag atgattcatc acctgaggca gttaagtgac ccggttcacc 1320 tggtccggcc agcgctgctc ttcttcccgc agttctgctc cgggccaagg gggaggtgcc 1380 gccacgtcct gcggcccggc gtctcgctcg acggcgaggg ccggcacctc agagagcggc 1440 ccgccccgcc ctccgtgccc gcggctaccg gcccgtcctg gagcaaggac ctggaacacg 1500 agcctgggcc tggaacacgg gccgaggccc caacgccgag c 1541 // ID KA520071; SV 1; linear; mRNA; TSA; MAM; 434 BP. XX AC KA520071; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27085 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-434 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-434 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; 2e692095193fe3bda0ee9190d6cfb450. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..434 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 434 BP; 100 A; 110 C; 107 G; 117 T; 0 other; ggttggtagt ggctatcaac gatgaccaga agggtatcaa atatcatgga aacccagtct 60 ttcactgaca ggaagtgagg ctgaacctcc agggagtctg agcagaggct ggcttcatgt 120 ttggaaacga cgacagcgag gctgcttaag gctaacagcg cgttgccttt gaccactggg 180 ctgtcttgac ttcatcagtc aacatgtctc gaaccttttt ttgtactgca cctcttcagg 240 tccttctttt ccatgtttta actgcaaatc cagttctcct atccttccta agcacgagtc 300 atatacgcga gccaggcctg ggggagaaaa attgcccggt gccactcgga aggctggata 360 tgaacccagt gaggtctgct tgaagcttcg ccctctactg gccatcagtc gattcaatgg 420 tttgccatct ttac 434 // ID KA520072; SV 1; linear; mRNA; TSA; MAM; 648 BP. XX AC KA520072; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27086 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-648 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-648 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; 1ed8d935bb57a89cf7aca36bf32d5d82. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..648 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 648 BP; 183 A; 137 C; 135 G; 193 T; 0 other; gcaaaaggtt taagtatact tcttcaataa acagcatcac ttctgttgtc tgtatcaaat 60 ctttgatatg tcacaacaca gttgtagtat ctgttgttcc aatattgatg gttgttcttt 120 gtcacaaggg acccggggtt taagtaagac tttgagcaga gttaatcgga gtttagcata 180 ttcttgtaac tggggtggtt cacaatatag ataccataga aatggcgcca taatttggat 240 acatgaaact tcagacggaa aaaagctgtc agctgctgca aaatgactgg ccagcaatca 300 ggcagtgatc aaaggctgag gatggtttcc tgaatattct tctccccgct gtgtccttcc 360 ttaacagctt gcatttgtaa tagtttcata atggctttta tcaagccatg tgtatttctg 420 ggttgagaat cccattgaga acatagctga actccgcgtg atcctgagca acaagggcca 480 ccagaccctc gcaacaagct gttcgaacta cgacattatc gctgcagcac ttctcccaca 540 gcaagttcaa ggcaggagtt ggatcttttc tgaaaagctg ttttccttta gaactgcagc 600 aataagatga cccacagcct gaatttggaa attcaaacct tttcctta 648 // ID KA520073; SV 1; linear; mRNA; TSA; MAM; 1807 BP. XX AC KA520073; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27087 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-1807 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-1807 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; c9dbb9d0801b3e4fd31eea005c5ae5b5. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..1807 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 1807 BP; 486 A; 452 C; 462 G; 407 T; 0 other; gatgctgaac agccagtcaa tgaccttcca cggctctttc tgcagcagaa gaggcatgct 60 actgggaagg agagtgagag cctcctgcag agtgaccctg tgtaatggac tcctgccaag 120 caagcttgat gctggcccag ctgggccctt ttcctgatgc catggcaacc aactggcact 180 gaggccaagg aggagagggg cagcgtgatc tgcccatgca accactgcgg ctgcaaatat 240 cagcaacaag aagtccaaag cctacggcaa agaagaaatt ctgaacagac gttgactggt 300 aagcaacatt tctgatataa cccatcagtt ccaagagcca ctccattctc ttcaacacgc 360 ctcacaatcc gtgcctggta taagctgtgc agcgtcatcc aggccagtgt gtctttttca 420 cggtgccgga cagcaacact gagcacatca gtcaagccca tcaaggggaa tcgtccttga 480 gagaccaagt agagcctgac aaaggcagcc ttttctaggc tactaacccg attggctcca 540 tcatctgtca tttccgagag gcactttgct acactgatat acagctctag atcatttttc 600 aggaggtcaa aaattttcct agtagcttcg ctgagcagac tccagaggtg gtgggaaggg 660 ctgggcagtt tcatggcctg actcaggccc tgtaaggcac ttgggcgtaa ctcaggactg 720 gagagtgggg aagctgcttt aaaaactgcc accattaagc tttcaacaaa acccacgatc 780 tgttcatcag agacatgttt tatccatgaa ggcacagata ggagaaggta tttcttgaca 840 ttcagtgaca ttctgggagg actgtgcctg ggtcaccatg agttcaagac atagttgctg 900 aatctcttca caagtggaga gaggagagca gcccagttca caggaggata ctggtggttt 960 tctccaacag ttgctatggg tttcatcaca actttgagaa gggaaggggg cacagattca 1020 ggacctctaa taaaactgct ttcaggcaaa tagctgtagt cagtaggcaa tttgaggaca 1080 gagtagacag atgaagatgt cctagaagcc agatggcatt tgactgaaga ccaatcaccc 1140 cagacacact gatgacctct aatgacttca ttaagtctgc cttgagactg agaggactgg 1200 atggcttctg acttcagtcg gagcctacca aggccaccat gccgtgaaga gctgccaagc 1260 aaagcattgt gggagcgcct tgatccaggc cggaagcaat ctgttgccca agtcttcagc 1320 ttttccatgt ccacacacag acaagccgtg aattatgttt cctaacgcca gggcaaaacc 1380 tgaagtacta acagtcgaag cttgttcatg atatcttcag cctccactgc ctcaatgatg 1440 ccggcactga atgcagatgt acatacacag ctgagggtat aggcaaggac ctctggctcc 1500 cgctgtcatc caggtatgcg gagagcttcc gaagtgaggc tgccacatga actcgggact 1560 ctgtctggcc gctgtgactc atgagggaca ggacgagtcc aactcccagt atacagcccg 1620 tgggtcaaag cagcagtttt ccagggcatc caaagacttc atcagaagaa ggttcatctg 1680 ttggctagat atatcactga acaagcgaga gagaaacatc cccagtgcaa ggcccatgtg 1740 gatttgcacg gcttgagact catcagcgct tggtttccca ggtaacctgg cagtcagcat 1800 gttcagg 1807 // ID KA520074; SV 1; linear; mRNA; TSA; MAM; 391 BP. XX AC KA520074; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27088 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-391 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-391 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; 163786404565e8baa1d1904ab93fb354. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..391 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 391 BP; 91 A; 108 C; 111 G; 81 T; 0 other; gggaatgttt gccctgcaga gatggaaagt cccgagggca gggaaggcca ctggtgtgtg 60 ggagtgcaca ggggcaagga ggagccatgg gagctgcagt tccttctaac ccaggtccta 120 gagcttccag gtggaacacg ttaaggtccc gggggcctgc agtggccaca aggcctttat 180 ctcaccttcc ctgtcagcct tagctgggga aggcacagtg tccaatcaat tccacaaaca 240 aggaaagtag atccctgctt gatgatctgc tgaaattgca agccatccag ctagtggcga 300 gatgggcttg actctccagc ctgccaggtg atagctcttc tgaccacata cccttcaaga 360 aggcccaccc ctggagtcca cttaattccc c 391 // ID KA520075; SV 1; linear; mRNA; TSA; MAM; 366 BP. XX AC KA520075; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27089 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-366 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-366 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; 51d85b41fe9d51f53d7eb469326fac9c. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..366 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 366 BP; 68 A; 109 C; 105 G; 84 T; 0 other; tgggctttga ggattcggac gatgaggcag ttgagaaggt tccgtctctt ctccaagttc 60 cggccctctt cgtcctcagc tttcaggtat gtctgagctg ggatgagcca cacgttgccc 120 ctccgaggcc tgggttcctc actgctgtct cgaatcttga gcaatcctgc tgggttgtcc 180 tttgtctcat caaggtccag ggggcccctt gaggaagtca gaggcccaac tgcctgattg 240 agcacgtctg gagggagccc cgagagtgcc agcagactct ccacagagac cgccttcagc 300 tcgttgaaat gcagcagcag ccacatctgc acggtggaca catgcagcgt ctgggcccca 360 aactgc 366 // ID KA520076; SV 1; linear; mRNA; TSA; MAM; 336 BP. XX AC KA520076; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27090 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-336 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-336 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; 0d32c2f390dd75bf3af5ef48cfd7a0fa. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..336 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 336 BP; 53 A; 106 C; 118 G; 59 T; 0 other; tgtgggcagc ctcccgacac tccaggtact ggtccaacag ccagcccagt gggctgacgc 60 cttcttcatc agggcaggtg atgttctgca ccagggggct gaccagggcc tcccagcagg 120 tcttgcccag cgcctgggcg gcctcttcgt cagggaggaa gcgactggca aagttctgct 180 cgtggcgtag ggccccgttg agtctggagc tcaggtgcag gagccccctg cggtcctccg 240 cgatgtcctg gctccaagcc tgcgcccgga ccatgtagaa gaggcgcgtg tggcggcaga 300 gctgctcccg gaacacgggc cagaaggtgg gcttgg 336 // ID KA520077; SV 1; linear; mRNA; TSA; MAM; 1096 BP. XX AC KA520077; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27095 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-1096 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-1096 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; cbc067352a5bfa6de094d65c10096951. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..1096 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 1096 BP; 320 A; 242 C; 260 G; 274 T; 0 other; tgaggacttg aactttaaaa ttttgactgt taaggaagga accagagaaa acagttcaca 60 gagggtcttc aaaatgagag gcctcgtgtc acaactcagc tttggggaga gagcattcca 120 agtggagcga atacaaacca cctgcatgaa gaccttgtaa caccaaggct gccggagtag 180 cttggtcagg cttagtgcac tcattcaaca cctgggaaat agctgccaac atatctgcac 240 catgctgata tggcctttgc tctgattgat gctgctttag caattagttt ctcccattgg 300 acttccttgc ccacagacag agagggcaca tcggacatgg ccatgaaacg ctgcagttca 360 ggatagacac gatcctgtga tgtcaacaag cgcaaagtga cagcttttag ttgtggagtg 420 gttccaagaa gttgaattac tcgtagaatc tgtcctatgc acacctgtag gtaaagtata 480 caagatatca ttgtataaca caggtgccag tggtcttcct aatttgaaca tcaaaactgg 540 aatcagattc ggtactgggc taattctgta gtgaccttca gtatctggtg aagatttcgt 600 cccttatctt caacaaggag gtaagccagc agaagaaaca catgagcagg gatcactgtg 660 gttataggga gcaatgactc cacggaagcc aaccagtcac ttgccgcaga ctcttctctc 720 attacttcaa ggatcctcca ggctgtaaat attgaaccat acatgctggt tatggggaac 780 gcaagcttgt aggagagctg tagcgctcct gctgcaccat ttctaaaagg tttacagcca 840 actgctgcct agagggacct tcttcatcca cggatataca gtcttccaag gcagtagaag 900 acagtatctg cagaactggc atcactagca gcaacgagga ctttgggatc ttctgactct 960 cagcagaaga aaggagcttc agagctagac cttctgttga cttgctggag tctgtagaag 1020 tagtaaagct attccaatta tgaccggttc aacaggaaaa tcacactgtg ctctaaaagg 1080 tgaattaaag atgagc 1096 // ID KA520078; SV 1; linear; mRNA; TSA; MAM; 704 BP. XX AC KA520078; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27096 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-704 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-704 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; 3fc1aca1b7ed8177a3a62d2c5469ef58. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..704 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 704 BP; 194 A; 185 C; 208 G; 117 T; 0 other; catcacgtga tcttcaccga ggatttcttg ttggcgcaca gaagggacac gtaggggacg 60 ccgatgaagg cccaccgctc gctgggccag aacttgatga cggggccttg ctcagggatc 120 tccgacgcag catcgaagta ggcgaagcac acgcagccca ggtaggcggc aaggcaaatg 180 aggatgtgcg ggaagtggac ggacgacagc agctcacaga aggcccggtc ggtgatccag 240 cagaagaggg cgagggtcca ccagaggccg gagaagaggc ccagcttaaa aacacgcacg 300 ttgtcacaca gtagcgccat gcagggaacc cccagggtca tcagagagat gttgttgatg 360 gcgggcttga caaacgccag gcacgttgta actgcagaca ggacacagac caccaccttg 420 aacctgccct tcggtagata ccttctgggg aaccacatgg ccaaagcaca catcaggacc 480 caaaggattg caagttcatc tagcatctga ccaaggaaac taagggttgc atggaagtag 540 acggatccaa ttctccatat taagtagatg ccactgttga agcacgttgc atactgccgg 600 aacaagcaca tgcagatggg cggtaagatg aaaaacaaga cgttgctgat catggcaggc 660 acgatggtgt agttgtcctc acaccagtcc acctccgagc tgcc 704 // ID KA520079; SV 1; linear; mRNA; TSA; MAM; 595 BP. XX AC KA520079; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27099 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-595 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-595 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; 6dde9de1ecd1c54e47e5e8cb98249b6e. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..595 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 595 BP; 178 A; 114 C; 134 G; 169 T; 0 other; gcagctgtag ctttatttga aggagcctct gtgattggtc tgagatatgt tctgtagccc 60 tttaaaatcg atgccataaa gcgcaaaaat gcctcttgaa tttccatctc aagttgtgtc 120 gagaaatctg cttcaattgg agtcatctca attgctgaac cttcttgagt ttttcggtga 180 aatttcttca aggtgctaat cagatttttg catggctttt tgggaagctg cttccagttc 240 atgttcttct tttcatctga taagtcaatg caaacaacat ctggtggtgg gtcatgaaga 300 tcaaaatacc tcgagtcaac tccaactata aatggtaaag gtgcactgag cactgccgcc 360 agtaaaagag gacaaagggg aatatacggg cattgccact gaaatgggaa gatcattcca 420 gtcaacacag ctggcctcag agaatgcagc aaaatcttac tctcaagtaa aacaaagagc 480 aggagtgttg cacagttctc aggacccaga ttcattaaca aggtgctaaa gttagctcca 540 actggttgtg ataatattaa tgcatcatgg actgatagtt gaggtgaagg aaaag 595 // ID KA520080; SV 1; linear; mRNA; TSA; MAM; 3072 BP. XX AC KA520080; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27100 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-3072 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-3072 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; 0f92a43afea421304eab7df9251e6708. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..3072 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 3072 BP; 819 A; 730 C; 627 G; 896 T; 0 other; ttcagaagtg aggataagtc ctggcaagtt actaggaaga tccaaacgcc tgaaatacca 60 aacgaggttc cagaaaatga ttggatgttg attgatgaat gaggacgtgt gaatcacctg 120 atcgccttca ttttctagca aagattcaag ttctttgcga agcactagag gactcaagta 180 aggcacagaa acagggggag ggttgggtct ttttcctaaa ggatcctgga agactaactg 240 ttgaaatgcc atgaaacggt cgctgggaaa agtccatatt ttgcaagctc caacactgtg 300 acttctagtc aaagacacat ttcgttttga taaactatta ggcacaggtg aaattttcat 360 agtttggaca tctccgctgg ctttcattat ttcatcagtt tcttcagtaa tggtctggtt 420 atgttttggc aaatccgtaa agttgatcag gtcaggttct gctgaactgg atatgggttt 480 gtgctccaaa ggttcacttg ccaatggaat gctgccactt tgtaaactgt caccagaggt 540 acttggtttc aagaaaaagc taaatatgga cccgtccaaa attaaattct atattgagaa 600 gaggcaagct gccgtccatc cagccataat ttcttcatca taaaccaaag ctgcacaaac 660 tctgcactgt gaacaacttg acatcaaaac gatgctggac atgctggtgt ttggagaaga 720 accatgatct gacttttcaa attcctgccc ttttatgcct cttggaaatg gaagttcacc 780 tatatctcca ctgctgctac tactgccgag gcttgtgttg ctctgggtaa gttcactggg 840 gaccaaccct gagatactcg tattaggtga tatattctct cccaaaatat ggtcttcaag 900 gccagctggg aaactgtaat ctctatttgt ttcctcggca gacgctacag ccacccacat 960 cttactggct actgttgctg cttgtttcat accagatttt agcacatcta tcttgggtcc 1020 tgagaggata ttgtccagct ttagccctga caaagaattt accacagaac ccaatgagcc 1080 gtgtggtgaa gaacggacca gtgctgataa agaagttgaa cgttccttag gacttctgga 1140 gggagtctgt tgcttgagac gccccgtaga agttttagac ctggacactg caggggagcc 1200 cttttcactt tcaggactct cctgtgctgg tggaccatga tctaaaggta ggcttgatct 1260 cctctctaaa gagtgaataa atgtactggt agcaccagac tctctgcttc cctctccatg 1320 tagttccata ctagtagact tgctacctaa gggactcttt agattcatat agctttcaat 1380 ttcatcagcc agattacgtg caataactgg agaaaacagc ttctcttctg aatcagtttt 1440 ttctcctata cattcagtgg ctaaaagaga caaaggatct agtccagttt caacatcttc 1500 cctctcaaca gctttagcaa caccatacaa gctatttctc ttatttgcta gatctctgga 1560 tcctgctttc gagtctctgg actgattact atcattttgt agactgtcac atgtgtcctt 1620 tgtcatagca gctttagcta catgttcatc aaccccaggc tcgatcaact cttggctctc 1680 ctcaagcatt tctaacaccg acagtcggtg ctccgaatcc caagtgcttt cagatgcgcg 1740 agtcctagcg tcagcgggat ggcagctaat actcccaaag ctgtgggctc ttgcattatg 1800 gagtggagaa gccttaggac ttgtcagtgc tgtgagaatc ttggcgtctg ctcccatcat 1860 gatagccact tcacttgaat tcaaatccaa actgctcttc ttaagtaaca ttcctgctcg 1920 actttcagaa ctaaaactac agcttctctc tggaaaatgc ttttgtcttt tttctcctct 1980 gtcaccattc ttcttgagat taataacttc accaaagaca gcatcttcaa ctggatcttg 2040 actagaaaat aatacacttg atgtactact gatatcaaat ataccagatg gaactttcac 2100 aatactgccg ccccacgcag gaggttcagc aggactctgg ggctctgcac taggctgaga 2160 atgtctggcc acaacagcag agacactgca cacctctcct gacatttgtt cttcaggcac 2220 atgaatttct gcatcgtcct ttaaaagttc atccttagac ccatagcctt ggtcagactg 2280 accactggaa tcaagcctga ttaaatctct gacgaagact gtgtgctccc cactgttagc 2340 atcattagaa ctatccacgc taccgtggct caccgtgtcc ccatcacttc cacctgtggc 2400 attctgggga gctgaacttt tgcacggtat ttttaagcgg ctgcctaaac tgtgccaagc 2460 cacgtaccac attccgtacc ttcgtccaca agaagatacc actgcgggta ctgctaggcc 2520 acgggctctc caaaactaca atagcatttg gctttatttt agcagttttc atttcaaata 2580 aaactctcac tgctaaaaca ggatgacccc aaagtccgca aagttgcatc actactcgat 2640 agcacactgt tttcctcatc ttaataagca catcatatgc ctgctgaagt gctctgacct 2700 taggatgaga aactctaaca taggctggga gacaaataaa ccataaactg taacagtgac 2760 tgaagagaca cttggcccac tgtggtggat ttgtgtaaca tctcctcgcc aacttatgag 2820 ctgtttttat ctcgagagct ggactgtttg taatgctact gccagtaggg tgtctactaa 2880 aacaaagttt caactcctgt ggtctgtcaa aaagcttaag gtccagtctt ggaaagtatt 2940 tgtaatttcc gtcatcagga ggtggctcgg gtggcattat gaatacagtg tgctcacttt 3000 tctgtgaatc atctagctct atcaatttgg tatcttctgc tgaatcaacg tcaaccttta 3060 tcaggaaaca ac 3072 // ID KA520081; SV 1; linear; mRNA; TSA; MAM; 458 BP. XX AC KA520081; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27101 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-458 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-458 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; aeda17370f7eafb4981d2e5b793abb14. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..458 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 458 BP; 113 A; 101 C; 98 G; 146 T; 0 other; ctggggccga attaaaggag cccttcgata agtgataaag attctttgtg aagtagttga 60 actattgttg acattggcac agcgaccata gggtgtggct tggatcactt cacatcctgg 120 aataagcttc tttcccatca tataaaactt tctctctccc tctcttgtaa cagagaaaca 180 gttctggact tttcagactt ccgtagttca agtttgcctg gagacctgat ggagtggctt 240 caacacaggt gtaaccttca ggtactgttt ccccagctga tttgttaata actgcaatgt 300 ctgtaattgg agctttaggt ccagttgact tagtatctaa acgatttact tcttgatcca 360 gaagagtaga tgtatcagtg agacctgcca caacaaagta gtccaccact cttggccctt 420 tgttttctat catggctgct actaggtttc ctgctgcg 458 // ID KA520082; SV 1; linear; mRNA; TSA; MAM; 1116 BP. XX AC KA520082; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27103 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-1116 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-1116 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; 20455ed02b312a9763ee31173b5e41c8. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..1116 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 1116 BP; 297 A; 275 C; 297 G; 247 T; 0 other; tggctggaag gatggcatct gttacagttg aaccacaact gcaacctccc cttggtgagc 60 tccacgtatg atctggtctc ctcggcttac atcagtacaa aggatcagta tccttacttg 120 aagtctctgt gtgagatggc agagaagggc atgaagacca tcacttctgt ggctgtgacc 180 agtgcgctgc caatcatcca aaagttagag ccacaaaatg cgcctgtaag gggctagaca 240 ggattgagga gaagctgcct attctgaatc agccaacaaa ccagggctat gactggggca 300 aaagatgctg tgacgactac tgtgaccggg gccaaggatt ctgtggccag cacaatcact 360 ggggtggtgg acaggaccaa gggagctgtg actggtagtg tggagaagac caagtccatg 420 gtcagtggca gcattaacac agtcctagga agtcgggtga tgcagctgat gagcagtgga 480 gtagaaaatg cactcaccaa atcagagctg ctggtagacc agtacctccc tcttaccaag 540 gatgaactag agaaggattc gatatggttc agaagccaag ttactatgtt agactgggat 600 ctctgtccac caagctgcgc tcacgggcct accagcaggc cctttgcagg gttgaagaag 660 ctaagcaaaa aggccaggag accatttctc agctccattc cgctgtcaac ctgtgtgcat 720 aatgccaacc agaaaattca ggatgctcag gataagctct atctgtcctg gctggagtgg 780 aagagaagca ttggctacga tgatacagat gaatcccact gtgctgagtg ctattgcccg 840 gaacctgact cagcagctcc agaccacgtg ccacaccctc ctgtccagca tccaggggtt 900 accacagaac attcaagatc gggccaacca cttgggggtg atggctggtg acatctactc 960 agtgtttcgc aatgctgcct cctttaaaga agtgtctgat ggcctcctcg cttccagcaa 1020 ggggcagctg cagaaaatga aggagtcttt agatgatgtg atggattatc ttgttaacaa 1080 cacacccctc aactggctgt acccccagta gacttc 1116 // ID KA520083; SV 1; linear; mRNA; TSA; MAM; 373 BP. XX AC KA520083; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27104 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-373 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-373 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; 1bad7b135124b5d494c81c4ac8e5d14e. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..373 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 373 BP; 99 A; 90 C; 91 G; 93 T; 0 other; tgagagtgct caggccccag gtacagccag gaggcctggc aggtggagta gaaaacaccc 60 taaacccgtc cctgtcagca atgcagaggg cagccagcca gatgacaggt cctcttgagc 120 tgaccacctg ctagacaggt ctgaagtagg caggcagcta gtgaggcaaa aaggtctcca 180 cttcagtcat ttccaactgg cataagagct ataaggtttc tgcattagtg cataagttct 240 gttacttacc tggcaagaat aatagaatgg tcagagcctg tccagaactc gcacatgttt 300 cagggcgttt atggcctcat tcttttgcta cttactattg ctgtctgttt gtactgaata 360 aaaacacctt cat 373 // ID KA520084; SV 1; linear; mRNA; TSA; MAM; 524 BP. XX AC KA520084; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27105 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-524 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-524 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; 32e4fc7d620a1093136bf7536d54475b. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..524 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 524 BP; 185 A; 109 C; 107 G; 123 T; 0 other; aaatgaaaca gttcctaaga aaacaccaga atttaatgta gaagactctt catcatcaaa 60 tagtgcaaag aatacagata gtagtacgtg tggagggtct ctgccagcta aaaaaagcaa 120 tccattccag aaggagcaag atcgtctggt agaagagcta attcaccaca gctctctgaa 180 gaaaaagaag ttgactctct aatttctaac ccattcttaa caaggagtca aattccccga 240 actccagaaa acttgaatgg agaaaagctg ttgatacaga agataacaga agtacagaac 300 caattcaagt ggatactgaa cgtagagaag aattgccaga atccttacct gtggtgcata 360 atcaaaaaga gtttagcatg gccagtttct tgtcagcagc cactgtgtcc gattctagtc 420 attctcgtct gcctgaagag aaagttgttt cagattgcct cgagtgtgtg cctcagaaac 480 ccgtggtgac cacttgcata ggtgaaccaa caacacaaaa tcca 524 // ID KA520085; SV 1; linear; mRNA; TSA; MAM; 550 BP. XX AC KA520085; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27106 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-550 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-550 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; ef6119d28051fa1b7e2d9eb6f62383fd. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..550 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 550 BP; 75 A; 192 C; 139 G; 144 T; 0 other; gcatgcagcc tgggcccaag ggcagaagag ctctgagccc catagcctcc cctaaccccg 60 cagaggtcca ccaggcatgt gggcttgggg ttcagaacct cagcagctgc ctgcttattc 120 cctgctgcac actgctttct ttgtgcttct gtccctgccc tccctacttc attttctgca 180 tcaccgtgca cttcagctac ttggattggc ttcccttcac ccctacagtg ttttgagttc 240 ttgttgctct gaccccccac caccaccccg aagagctgag ttctgggctg ggtctttagc 300 atggctggtg ttgcccctcc ccggtcttga ccatccctgg ccaggacaga caccttggtt 360 gtccagagtc agcaccaatg ctttacaaac tctcaggcgc ctacccttct gcccctctct 420 ctcgtctgct gttggctctg gctccctgct gtcccgaggg ctacgctggc ctcttcctgg 480 gtctctctgg gacccaggtt gggagggagc cggctggcca gggggctctg ctggctggcc 540 cattctgctc 550 // ID KA520086; SV 1; linear; mRNA; TSA; MAM; 913 BP. XX AC KA520086; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27107 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-913 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-913 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; b45d37dea584b2bc91a558d2d7c6605a. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..913 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 913 BP; 179 A; 254 C; 298 G; 182 T; 0 other; catgctgggg gcatcacatc tggggagggg gcaaggaagg aggtcgaaga gggttgtgtg 60 tctaggggtg gggaggggca aataaataaa taaaatgaag aaagcttaag ttctgtccaa 120 ggtggttgca tgagtcctct gtgcggccag ggtagtgttc tcgcctcgcc ctgtcttcat 180 gctttggcgc aggttccaca gcagcgagat tggaactggt tgagttggca gagtttcagc 240 tgtttcacct tctcacagta cctggtggtg tctctgcatt ccggatgttg cagcgctgcc 300 agttggctgg ccgaggtccc caggagcaca ggtggtcggg cactgccttg ttggtgcggg 360 cgtgcacgca ctccacgcgc cgggactgga aaccgtagtt gccacaggtc gccgtgcaca 420 gggtccacag gctgaccctc cagtgcacgt tgcaggcttc tgaccagcag ttctgggtgc 480 tcacaggcac tgctctgatg ataaggtgat gccatccagc gtctggcaga agacttgtct 540 gtgctgcaca gcaaggcgag gcccgatgca aggcccattg caaaggccca ctccacacac 600 aactgctggt tacaggcctg ggtgtcgact ggccgcttgg caagctgcgt gcacacgtca 660 ctgggcacag gagtggagaa ccctgagcgg gtctggacgc ctcccccaca gctccgggta 720 caggcagacc aggaggtcac catccactcc ggttgcaggg gataggctgc acagcagggc 780 gcaccttccc cgcgcagtga gtggggtcca cctccatgtt gtttaggaga caccgcaggc 840 ggggctgctg aacccccctg ttgccacagg aggccgagca ggtcaccggt ctgtccacag 900 accaccagta atg 913 // ID KA520087; SV 1; linear; mRNA; TSA; MAM; 351 BP. XX AC KA520087; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27109 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-351 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-351 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; 43058c8cac25293b64baca2573805fc1. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..351 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 351 BP; 45 A; 139 C; 107 G; 60 T; 0 other; gctcctcctt tacgctgctc agctcttcct ccagcagctg cgtccgggtc accatcgcct 60 cctctaccga gatgccctct agccgcatgg accccatggg cgcgctgagg aggggagcct 120 gagccggagc tgcccccgct ggccctcgct ggccctctga cccttcttcg ccccgccagg 180 gtaaatcgct tttgtccacg acgccctccc gcgctgcgcc ctcaagaccc gaggtctcgc 240 tgcgcactgc gtgtgccaca gctccccgac caacacgtgg ggaccagggt cccaagtgtc 300 gcgccggggg cggagggagc tgtgagggcg gcgaccgcgc cgccattgcc g 351 // ID KA520088; SV 1; linear; mRNA; TSA; MAM; 1741 BP. XX AC KA520088; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27111 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-1741 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-1741 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; 91a31a4437815bf4de7f50f9e01adac0. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..1741 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 1741 BP; 323 A; 471 C; 516 G; 431 T; 0 other; tcagattaca aggtggttta ttgagttagt ggcatgcgag caagttcttc ccgtgatcag 60 caaacgcagg cattagtgcg tttcagagga gttcagagga aggagaggct ggtggggtca 120 ggaggacctc gaggtcaggg cctggtcatc tggcgacgtg cagagctctc taaaggggcc 180 tgaagctcat ctcaggggca agtgggtgca gatgccccga tacttgcaaa agcaactttc 240 acgcctcact cctcctgggc tcttccggcg gtattgctgc agcgctttct ctgccacatt 300 ctccatgaag ttaggactgg agacttcctg tgggaccgtc actgtgaagg ggaaggagtt 360 gaagagtttc acaaccacct tggtgaggcc agacgggatg ctggggtcgg agttgtggga 420 attcaccgtt ggagacctgc aggtagtatt ggtcgtcgct ctgcgtgagg ttggccagct 480 gggacaccca ggtgaactgc tcgttcagct gcttgagcag ggctgacgtg ttgagcatct 540 tctgctggta ggactggagc agctggtcgt acagcctgct gaacttctcc gccagctgca 600 gggatgcgtt cagctgctgg cgcagcagca tctgagaagg gttgctggcc gaacagtctg 660 cacttccagg atctcctggc acttctcgca ctggtccttc atccgcaggc atcccgtgga 720 gttgtggcgg atctccttac acacagtgcg gtcgttgttt tcttgtgaat tccatcatgg 780 ggaagtggta gggagtcctc tgcaggtggg catccatggc ctgctgggcc tggtggatca 840 tgtcgtagaa gggctgaaac acatcgtgga agttgaaggg ttccaacaag gggaaaggca 900 tcatgctccg ggcaaagcgg gacttgggat tgaagaagag tgaccccctc gggaacgagc 960 tgaaggggga gtagtactga gtgtcctggg gcctccggag gaagaaccgg tcctggaaga 1020 gctcgtccat gatgctggac gcccgggtga agctgtcctc catgacatcc atcacgtggc 1080 tctgctcccg gtcattctcc atcagggaat cgatgcggtc accgttgatc cacaagtaga 1140 agggggagct ctggtttagg aactcctcga gcttggtggc caaccagtcc cgatccactt 1200 ctgcacaccc gcgcgtagaa cttcatgcag gtctgcttga ggcagggctt gcattcctcc 1260 cagagggctg tcatggtctc attgcacacc ccctgggatg ccttcagctt gttttcagaa 1320 tccctggtgt cattcagggc gtccttcttt cttcttcttg gcttcctcta gggagctgag 1380 cagtaatttg cgctcttcgt tggtttgttc gatttgggtc tttatctgtt tcacctcctt 1440 gagggcattt ttaatttctt tattcacgta cttactcccc tcggtggaca tttccctgga 1500 gctctttgtc cgagattgcc cggccactct cccagctgag cagcagcccc accaacagca 1560 gtagagtctt catcttgcct ccttctccgc ttctggaatc ccagcacgcc tcgggtcaac 1620 gctgcccgcg cgctcctcct ggccacgccg cgtgcacagc accgtgaggc gcccgtattt 1680 atagcgctcc gctgcgtata cacccacttt ggggctggct gcaaacctgc atgactcacg 1740 c 1741 // ID KA520089; SV 1; linear; mRNA; TSA; MAM; 554 BP. XX AC KA520089; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27112 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-554 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-554 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; e37f702954b78e1ef25bb203cc829e4f. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..554 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 554 BP; 139 A; 138 C; 143 G; 134 T; 0 other; aagatggtgt cagctgaagt aaactgtctt ggtgacatca atgatttctc tttgggtgca 60 agaccctgtc tccctggaga cggggaagga ggggcattgc cccacacctc atgaagcatg 120 gcctcggggc tccggtgctc agactaggag atcctctcac tgccctgtcc cctcaggaat 180 catttccaga agtggtggat gttatctgta gctgctattt gtccagtact gctatgctta 240 tgctcaggca ttaccaagca ctctggatag cagtgatcat taatagtctg atgtattctg 300 acatccagca atgaaactga ggatcacaga gctaaaccat ttgcctaaag tcataggatg 360 aacgatttgg gaggtcagga tggtgaaccc agagccgtaa ctcctaaact tgggctcttg 420 ctactcagcc tatatctata gagttggaaa ttctggcccc aagaacctag gtagcagaag 480 agccagccag gatcctcaga ccacaagcac acagggactg agggctgtgg gtccaggttt 540 gcccgcctgc ccac 554 // ID KA520090; SV 1; linear; mRNA; TSA; MAM; 743 BP. XX AC KA520090; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27113 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-743 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-743 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; eeb1a306edcd60fda3f9d4e1dc908595. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..743 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 743 BP; 216 A; 211 C; 193 G; 123 T; 0 other; cggagccgtt gagacggctc tgcggcagct ggtggcgcag gtggcttgcg tggacgcgga 60 cggaggcggc cggcccgcca ccgcagcctc agcgcccgcg gccccggcag gcgcggaggc 120 atcctccccc tcccgccatc gcgggagccg cggctcccga ccgccctccc gcatcccctc 180 gcagtccgca ccgccgcacc tcctccctgg gcttcggacc ctcggcctcg cccctgaaac 240 atgactcgcg acttcaaacc tggggacctc atcttcgcca agatgaaagg ttatcctcat 300 tggccagctc gatggagctg taaaaccacc cacaaacaaa ctaccgattt tcttttttgg 360 aactcatgag accggcaaac caaataaacg aaaaggcttt aatgaaggtt tatgggagat 420 agataacaat ccgaaagtga aattttcaag tcaacagaaa tgcgtcatct gatgttgaag 480 ttgaagaaaa agaaacaagt gtatcaaagg aagatactga ccatgaagaa aaagccagca 540 atgaggtgac ataaccactc caaaagctgc cagaagaggg aggaagagaa aggcagaact 600 gaggaggctg gagtagtgac tacagcaaca gcatctgcta atctaaaagt gagtcctaaa 660 agaggacgac ctgcagccca aaaccaagag gcagacccaa aatggtaaaa caaccttgtc 720 cttcagagag tgacatacac tga 743 // ID KA520091; SV 1; linear; mRNA; TSA; MAM; 540 BP. XX AC KA520091; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27115 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-540 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-540 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; cddff6c312f3992fafabb926455acae5. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..540 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 540 BP; 178 A; 81 C; 110 G; 171 T; 0 other; actatcaaag gaaacaaacc tatttgaaaa catgactatg agaagggaat ttttatttct 60 aatgcatcat gtgacaggat tgcaaaaagt tactctgagg cagcagacaa aagtgaagga 120 gttgtctgta ttttcatgta tatggactaa atcagagtga acaaaggtta acacagaatt 180 ttaagaacaa ccttaacaaa caggatttct aagatatttt gaatactagg tcagttggtg 240 gtttgcagta gcttaaaaga tgcttctcat gtttggaaac taggaatacg ggaaaaaggc 300 ttaaatacca gtgtttgcat gtgacatgca ttgtatgctt tgacctctcg ggtaattttt 360 ttcatcttta gatgaaaact tggaatcatt tcagtaattg gagacttgct tttgagaggc 420 cttacaatgg aactaggacc cactgttctg agggaactct ggctattata tctgtttggt 480 ccttacacaa tttaaacttg gacaaattta ttctagttaa gccataagtg tcaacatgta 540 // ID KA520092; SV 1; linear; mRNA; TSA; MAM; 508 BP. XX AC KA520092; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27116 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-508 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-508 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; 951c55a8e3369e9f41e7456bf4d90c28. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..508 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 508 BP; 150 A; 103 C; 107 G; 148 T; 0 other; actttttgca gggatgacaa ctttagctga ttgtttctgg tggatcctgt tcctcgttgg 60 catttcttgg aagtaaagta accaagttat ttcacaaggg tacacttttg gatattaatt 120 aaaggttcca ggatcgacat agggataagc gaggttgcct tctgcatcat agtggagcat 180 tcggaagcaa acatcacaaa agaaacatgg gtcctgtggt gcaaaactgt cattgttcgt 240 cacccataca aacaaaacat tttctggtcc agagccaatg cttcttgatg ataaggggat 300 aaagtgtctt atccaggcag tcgtcatgat gcacaagcct tttgtacatg aaaaaaaaca 360 acgtgttcac agtctccctg gtgacagtat aagtaaggaa aacccacttt aatatacaag 420 tcattgaagg tgaagtcttc catcttagca gtctgaaact ttccatagcc tctatcatgt 480 gactctgacc actcaatgat ggttctgc 508 // ID KA520093; SV 1; linear; mRNA; TSA; MAM; 739 BP. XX AC KA520093; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27117 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-739 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-739 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; f12a10070355bb34ca4478b4f709c69e. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..739 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 739 BP; 313 A; 121 C; 172 G; 133 T; 0 other; gccaaaacag gggttacatc aacctctgat tctgaagaag aaggagatga tcaagaaggt 60 gaaaaggaac tttcaaactg ctcatagaag gaatatgctc aaaggacaac atgagaaaga 120 agctgcagat agaaaacgca agcaagaaga acaaatggaa actgagcagc aggaaagaag 180 ccagaagtta agaaagtgga gaagaagcga gcgacttcaa aggatacatg ctgaaattaa 240 aaattcactc aaaattgata atcttgatga ggccttggat gaactggctt cacttcaggt 300 cacaatgcaa caagctcaaa aacacacaga gatgattaca acgctgaaaa aatagtcagg 360 ttatcatgga aaagtctaca atgttgtata acaagtttaa gaacatgttt ttggttggtg 420 aaggagattc tgtgatcaca caagtgctga acaaatctct tgccgaacaa agacagcatg 480 aggaagcaaa taaaaccaaa gatcaaggga agaaagggcc aaacaaaaag ctagaaaagg 540 agcaaacagg tatgggagga tcggatgctc aagacagtaa tcaaccacaa cacaatggag 600 acagcaatga agaaagcaaa gacaaccacg aggccagcag taagaaaaag ccaggagaga 660 gactgaaata tctctgaagg attctacact agataactag gttgacatac ctggaatata 720 aagaacattt gagaagttt 739 // ID KA520094; SV 1; linear; mRNA; TSA; MAM; 410 BP. XX AC KA520094; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27118 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-410 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-410 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; b340e4bbf3c23054439dec4485dd1e7e. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..410 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 410 BP; 68 A; 139 C; 102 G; 101 T; 0 other; gaattttcag gctttttccc tacagcatgt gactctttct tgtctgcagg ctcgatctat 60 ccttaaggtt tcttcccggt gtttcagaag cctctttcta acccccagta ttttctggga 120 tgacttctgg atcctcccct tcttcaaggc acctcagttt atcaagactc ggctgccgtt 180 tccaggctgc agcccagatc gcgggccacg gcggcatcct cgcagccgga gtcggtgact 240 tctcggcccc ccggcaggtc cttcagcgac aggtcctctt ccccgcgcag ccggccacgc 300 cacagctccc cgaaggcggc cacatggaaa gcctgcgtgt ttagctcagg aagctcgtag 360 tctggaaagt taaagccgcc actgctgggg accgggtcct tcccgccacc 410 // ID KA520095; SV 1; linear; mRNA; TSA; MAM; 1003 BP. XX AC KA520095; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27119 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-1003 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-1003 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; 14f88ffe0a0eabd7c72126794cb70489. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..1003 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 1003 BP; 285 A; 211 C; 246 G; 261 T; 0 other; ctgagcaccc tgtttggttt ttgggcggcg gcagccggag gaggaacatg gcgctcctcc 60 gcaacggagc agagttggaa gtggacgagt ttggaaaccc tctctgttgg caacaagcag 120 ccagcacttc tcatcatttg attcaaaaca gacaccggga cagcaccgga catccaatgt 180 gaaaagtgga tcttaggagt ggcctcgaag aatgtgcgat ggcattgaac ttatttctaa 240 gtaacaaatt tacagatgcc ttagaattgc ttcgaccatg gaccatgcct tggggtacag 300 taccattgtg gtgttgcagg ctgtcatgac cttcgagcaa caggacatcc aaaacggcat 360 ttctgccatg aaggacgcct tacaaacctg ccaaaaacag ttgtagagtc tttctcaagt 420 cttctttcaa gaggatcttt ggaacagcta actgaagatc tgctatgccg agtgcctcct 480 acagaaagca gccctcacgt ttgtgcagct tcatcaaagg tggactcaaa attagaacaa 540 gttaccaaat atataactgc atgtaattca gaagaacaaa gttgagcagc agttcttcta 600 cgagtttgaa gggggtgtca agcttggaat aggggcgttt aatttgagca cggattatca 660 gactgctaga atttatagga ttttctggaa atagggttac gggaaggtgc cttaggaaga 720 agcatgaggt ctccactatg ctgcttaact atactagctt tccatactta catctctctg 780 atacttggta gttgtggaag cagagagtct cctcgaaccc tacctccagc agtttccaaa 840 tctatcatgg ccggatagag ctgctcaaag ggaatgtgga agagaaaatg catttcagtt 900 caagaagaat ggaaacagtt tcaccatctc tgttactggg agctgatgtg gatttttgta 960 ttccaacaaa actggaggga ggcatattac tattcagatc tgc 1003 // ID KA520096; SV 1; linear; mRNA; TSA; MAM; 499 BP. XX AC KA520096; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27120 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-499 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-499 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; 14f6d6744e2bcfe9dd58cb6702ce3546. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..499 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 499 BP; 149 A; 101 C; 115 G; 134 T; 0 other; tgtgaatttg cgccttgatg tttatttcct attataagag cctgtgggct tcccaggtgg 60 gtaaagaacc cacctgccaa tgcaggagac ataagagacg tggattcgat ctgtgggttg 120 ggaagatccc tggaggaggg cttggcaacc cagctccagt atttcttgcc tggagaatcc 180 catggacaga ggagcctggc gggctacagt ccgtagggtc acaaagaatt ggacatgaca 240 gaaatgactt cacacacatg cacgcacgcc taagagcctg tatccagcag gtatttgatc 300 ttattttctt caccgtacta attcttggcc aatacggagg atgtatttcc aatggaaaat 360 gatgaattca actctagtca gagatttcct cacatgctat taatatgaat tataaaactt 420 tacatgagga ccagacaaaa gaggaaataa attaactgcc attacaatta gtagtggaaa 480 atctgttgaa caatttctt 499 // ID KA520097; SV 1; linear; mRNA; TSA; MAM; 340 BP. XX AC KA520097; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27121 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-340 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-340 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; 1acdb63b5b34f2eb571525c27f8ed493. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..340 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 340 BP; 96 A; 70 C; 87 G; 87 T; 0 other; gaaagaggat gtggtaactt tattcagagc agagaattgc tgggaaatcg atccctactg 60 agaagtttgc tgtgaggaag gctcgacgtt actctccctc gttgccagca cccgtgaaac 120 tcgttttgcc tgccctggta tctggaatgg ttttccacta gtgagcaaga gaaaagacct 180 ttctgaaaat ctgttgataa ctgttgaaaa ggccgaggca gctctacaaa gtgagagtcg 240 atgatgactg tctagtgaaa ctgctcaaag gatgctgcct gaagaactta cagaggccct 300 tgcaagcaga actgtgcttc aatcatattg tccaaagatg 340 // ID KA520098; SV 1; linear; mRNA; TSA; MAM; 429 BP. XX AC KA520098; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27123 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-429 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-429 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; dce75be8c97368b42054ef6cd06d728c. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..429 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 429 BP; 100 A; 95 C; 79 G; 155 T; 0 other; tctgatgccc taagagtttg tgattcatag ggcatggaat ggatctcaga aaatgtaacc 60 tccccaacct ctcaacactc ttgtttctcc ttcatagagc acttggaact tggcacatgt 120 tggaatgatg ctgagagtca gggagcattc attcatacat gccttcccct gtcatgcttc 180 ctggggttct gacttatacc tgctgcctgc tgtgatcacc ttaaatcacc cgtcatggtc 240 caaatatgta tctgtgaggt ttgctttttc tattttaagt tccagatagt catcgatcat 300 tggcctgttt gaacattatt attctctccc ttcctcagtt ccttatatac tagactgaga 360 gattttattt ttaggattat tagcttaatc tgactttata gacattcctt actttttggg 420 atgtaacag 429 // ID KA520099; SV 1; linear; mRNA; TSA; MAM; 651 BP. XX AC KA520099; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27124 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-651 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-651 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; 0411ad347194fff368b20f0aaf455dcd. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..651 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 651 BP; 77 A; 231 C; 194 G; 149 T; 0 other; gctggctgtc aggcaggggg cgcaggctca tggagctcct cctcccggcc ccggggcacc 60 cgtggcagtc tgtccgccct tccggctacg gcccctcctg gccggtcccc tccacgcctt 120 ccctgaggtt ccgctggcgg gcccctcttc gggaacccca ggccgccgac gcctcctccg 180 tgcggctggc tgcgctgcag ggcctcagag ctcgctgtgg cctcagagct cgttgtggcg 240 ggccctggag atgcggctgg acaggtcctg catgtgcttc ttcaccttgt agcccagctc 300 cttggtcttc tcctccagca tggcgtagcg ctccttgttg cgggtgacgt gctcctggtc 360 cccaaagctc tccacgtgct tcagcttctg gtgagaaatt tctagctgct tctggtaatg 420 gttgtgcttt tcaattttaa cttcaaagtg cttgagctcc tcccggaagg actccagctc 480 cttctcggtg aagttggctg acttggccat gtcccagagg tccagcaccc ggggctccgt 540 gaactcagtc tcggagccgt agccctggtg gctgaccctg cgcagccggt cgaagccctg 600 gccgatgctc cgcagccggt ccttcagctc cgcatgcctg ctcgccagcg c 651 // ID KA520100; SV 1; linear; mRNA; TSA; MAM; 905 BP. XX AC KA520100; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27126 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-905 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-905 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; 4e430fac9d6d2dc76f5c06a414cf8228. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..905 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 905 BP; 216 A; 173 C; 198 G; 318 T; 0 other; atacctttat ctcacattta taaagcatat catggctgtg tatagttgcc gcttaaaaat 60 tgtaatcgac cagcaatatt ttcagtattt tggtgttttt tctattaacc tttcatgttt 120 ttcatcttcc aattaatatt tgggggggag gggtttcaaa tttatacgaa ttatgcaata 180 ccaagttttg cctatgtagg tagtgctttt agctgtattg gttgcttttt ttgtttgtaa 240 gtttgtttta attgaccaaa gtgggtactg ctatttttgc agtgtgatga ggtccttttg 300 tgtactgaga gatggacaag ggattttttt aatatacata tatatatatc ctggggtggg 360 tgggaggatt tttaacactt tacagtgtag ctgtgaagca gtgcaccctg agacgggcct 420 gggctgcaaa gcgactgttc tgcctactgt gacaaacttc aacttaaaca cagcttccct 480 ctctcgaact ccccacctgg ggtgcaagct gaactcattt ctggttttca taacaacaaa 540 cagagtaaga acaagtgaac acaaccagtt ctcctggagg cagacttggc ttaaaacaaa 600 tggtcttatc tttctgttgt tgttgttggg ggtggtcgtt tttcttgaaa gtttcggatc 660 cacagtggag aatgagcctg tctcgtattt ggcaaacata gttgttgaaa agtacattga 720 gcacatgttt cgactttagg ggtttaacac ctgagtctac tttctcctct aaaatctgcc 780 atcctgctgg agggggtgct cccatatcct ttccccacca cttctcttcc ccatttcatt 840 ttgtgaacag tagtctgtga tgtacctgtg tctcactact tcaagtggat ggtagtacgc 900 ttggg 905 // ID KA520101; SV 1; linear; mRNA; TSA; MAM; 552 BP. XX AC KA520101; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27127 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-552 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-552 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; f6cc92cb4a61ddf25be578999db9a151. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..552 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 552 BP; 149 A; 129 C; 116 G; 158 T; 0 other; tttaatttcc ctggagggct ggagggtgaa tggaggctgg ttctacttta cttctcccaa 60 ctgcccccca gttccattga gggaattcat tactagaagg aagctctttt agaattagtg 120 acgcatggtg ggctgccatg aggagccccc tgaccccctt cccccaggcc atggcctaat 180 aaaataaact gtctattgtt ctcacagcat atcatttaat gatgaagact ttagaacaat 240 gcttacgggc ctgagaattg tatttgatta gcccattcag tttgatagcc ccaatgctga 300 aaagcacagc aggatcatgg cagtgcaagt tcaaaagtaa gttcagtcat ttttgtgatg 360 acttgccctg gtagaaaaca gatcatctca gccaagctct tcaggtctcc aacctaatag 420 gtgaacaaat ccacctcaca ggacacacag tattttttca agagcagatt tgctctcttt 480 tttaaaattt ttgccagtga atgagcagct ctagctgcat aagttacaca ctgtgggtat 540 tcctgcctgc ca 552 // ID KA520102; SV 1; linear; mRNA; TSA; MAM; 474 BP. XX AC KA520102; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27128 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-474 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-474 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; 6e988eee817d0bd625dc7d5c8dcf136b. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..474 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 474 BP; 124 A; 111 C; 117 G; 122 T; 0 other; atccattttg gcctccttct ctttttacca ggaagtatct tgtgactaag ggcccccctc 60 ttgcaggtct tgcacgcccc tcccctcccc agaattgcag agctacagga tggtgaaggt 120 cacccaaggg catcagtagg gggtggcgtc tccagcccct ggctccatgg cactgttcaa 180 ctttccttgc gttgctttgc agcccacccc tcacagtgcc tctgaagtgt ttcctctgga 240 gtaacatgag cgtttgaggg cttgtctaag gagaagaaaa gaataaggca gtgaaggaga 300 ctgtacataa agacatggca aaaatcgtaa ttatagcaat atagttatgg ggtaatgttc 360 gggtgggcag ctccatttaa aaaaaaatat gtgaatgaat ctgtgaagct gcgagtagca 420 agaagagcga aaggtcttct tcacaaaccg cctaccttgt agacagtaat ttgt 474 // ID KA520103; SV 1; linear; mRNA; TSA; MAM; 606 BP. XX AC KA520103; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27129 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-606 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-606 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; ca0fb71e6ee7074f7c5255d071c2dc8d. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..606 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 606 BP; 191 A; 105 C; 124 G; 186 T; 0 other; ccaggctctt aagttatgta ttaaaaaaga aaaaaaaatc tgtccatgtt aggagttatt 60 tcacagattc ctgggcttga aaagcatagg atactaatcc tttaaaaagt gtaaatggag 120 agttggtttt cagagcattt cagaatgtcg gaagcaccac tgtcttttta ttagtataaa 180 cggcctttag caaaagtttt tgtgattgtt acgtgatggt atttaaggtt gtttcacaga 240 gcattcagga taggcagaaa atgacaaaac agtgctatgt ctcacataac gtgtcctcag 300 ggagcagaat cttggatttg tgacttgtag cttcataagg actcaacaaa agagattgca 360 cagggacatt tcagcagtgt gacaccagga catatgttct ttacctagat tcaaactcta 420 tgtatcgtgt gaaacgatga aggctgcaga aagttatccc atattcagtg tacagtattc 480 atttttaatg aaacaactac aatattgctg gcagataggc cccaagcatg ccattcaata 540 tagtttacat gttcctgtca aggtctttgg ttaacattaa ccagctgcat gcttcctgga 600 ctttaa 606 // ID KA520104; SV 1; linear; mRNA; TSA; MAM; 1158 BP. XX AC KA520104; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27130 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-1158 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-1158 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; 8e58bb7e19c811a6259a876d975082ed. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..1158 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 1158 BP; 326 A; 207 C; 239 G; 386 T; 0 other; gagctgaaag ctaccttctt cattttttgc actttctggt agttcccctg tttttttcta 60 attccttatg aaattgtgtg ggtggggtgg agcactgcag ttggggggta acatggacca 120 ctgatttttg ccctttgacc ctgcacaatg acctttgcat cagccaaact cattgccatg 180 acaactcttt gtactgtgtc cgtgccacag atctgttggt gacattgttc atatagtcaa 240 aggggacaag ttggagacgg tcaattttta cttttttttg ttgttgttgt tgcaattctt 300 tcttcaatgg ttgtaagtag ttttttttgt taagactctt tagaaatatc tgtgtgttgc 360 aattcaaatg tatgttgaga ttgtgaaaag gcttcagtgg cactagccta ccagcacgcc 420 agccccagcc tctgataact ttgattgcat gatcagtacc ggtaataaac ggtggcctat 480 gtacacagaa gacagtgtga gctagtgaca ctaaagccgg tcttgcatta ctgtattttt 540 gacagaatgg ttttgaaaac tgtgctacag ggactgatgt ggcaaatata tctttttatg 600 cagaaggaag tctttttttt ttttttttca agaagtatgg cttattatgc attcttcatc 660 gagggcattg aagttgcatg gactgaaaaa agttgatgca aaacgagaaa gaaacaaaca 720 aaacaaaaca aaaaaaaaac cagcaaaatg tttaccaaaa aactcaaaca aatgagcagt 780 gcctgttcaa tttcacagtc tctgttgagt tcagttgtaa atatgtttca aatgacattt 840 tcttggaaaa aaaaaatatc tctacaacat tgtagaatgt gaggggtaac tccatcccag 900 gaataggctt ctcaaagctg cagtagatta tgtcttcatc aagctgttaa tttgtgctta 960 tatcatatag aacttttagc atcctgggaa gagatgcccc cacctcaatg atatttctct 1020 gagaacaact tttgtaggac tgtgtgtttc tttagataca tttagtacaa ctgtaggtga 1080 cgagtagtca gttattgctt gctagctaca caccagggtt gatccatttt aaaacttttg 1140 gcattttgtc ctcatggg 1158 // ID KA520105; SV 1; linear; mRNA; TSA; MAM; 339 BP. XX AC KA520105; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27131 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-339 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-339 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; cb1343baf0eab536a0976117a78833d8. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..339 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 339 BP; 101 A; 58 C; 73 G; 107 T; 0 other; gtaacaaacc tttagcagta ggatgtatta tatgacagtt acttaatttc tggcattcag 60 accgctggga tcagcctcag aaggggccag aatgttagcg aaggttttat tgtgcccggt 120 tggaggataa tgttctttgg gtactttttg tgggttgcaa atgaactcaa ttgccacaag 180 ttttaaactg gtgtaaatca agcttgactt aatgtgattg ttactgttat atccagccta 240 tactgctagc agctgctcat actgcagtca attactggaa gcagatatat ttcctatgca 300 aaaactgttt aaacaataaa atgagctatg ctacagaaa 339 // ID KA520106; SV 1; linear; mRNA; TSA; MAM; 3134 BP. XX AC KA520106; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27132 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-3134 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-3134 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; 48d82e9474a546641070df774d28f743. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..3134 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 3134 BP; 862 A; 876 C; 732 G; 664 T; 0 other; aaagcgagag agggagggga aaaaaagagc ccagagcaga aagagaggag tttggagccg 60 agcgggagag cgggatttat cgtttgggat ttttcaggag cgcgttccga tacccccggg 120 ctctgggcag ccgcggcagc agcagcagcc cccccgcggg cgagacgcgg ggcgaggcgg 180 gcggcgggcg ggcagccggg agtggaggag tcggcgcggg cggcggcggc tgcagccggg 240 gcccgcgcgc cgcgaacctc ttccgcccgg gagacctgcg ctcgcgcccc ctccctcacc 300 ccggcctctg ccggctctcc cacccacccc gcccccaccc cggccctctc ccgcgcgcgc 360 cccgccaccc gcgcgcactc gctcacgctc ccccctcgcg cacacacatg gtcggctcgc 420 ggcaaagttt cgcctgcgat cgccactccg ggatcctgcc gcagtgcttg gggctgtaac 480 cttgaacttt cccagcgcgg tgacacattc tcctcgctct ccctcccgcc ctctctcctg 540 cgcccccctc cccgcctttt ttaaaaaagc atttcatcac caaccaccac cccaatccga 600 cccacaccga accttcgctc accccctagc ccccaacaac aacaacaaca acaactgcaa 660 acagaaaaca aatccccaaa cccaggcgaa aagcagccag caccggcggc ggcggcggcg 720 gcctcggcga gcacggccag cgcgctcgga ctgcaggagg gttaaaagtg tagattggat 780 ttcaccccgg gaaatctagc acgccgagtg aacttgaatc tttggctatt taaggaggac 840 tgggtttgtt gtgaagttgc ggtgatccag cgcagagccc tgtcctgatt gatcgcatcg 900 cggggctcag atgactgtaa aatgaataga tgaaattctt gcttctcgaa gattttcttg 960 ggcatctccg ggaaagtgcg ttttaaggcg aagtcatgat gtattctccc atctgtctca 1020 ctcaggaaca tgtctcagtc gctctcatcg aggcactact tccacatgtc cgtgcaatcg 1080 cctatacttg gttcaacctg caggctcgga aacgcaagta ctttaaaaag cacgagaagc 1140 gaatgtcaaa ggatgaagaa agagcagtca aagatgagct tctcagcgaa aagcctgaaa 1200 tcaaacagaa gtgggcatcc aggctcctgg ccaaactgcg caaagatatc cgccaggagt 1260 accgagagga ctttgtgctc accgtgactg gcaagaagca cccgtgctgt gtcttatcca 1320 atcctgacca gaagggtaag attaggagaa tcgactgcct gcgacaggca gacaaagtct 1380 ggcgtctgga tctagtcatg gtgatcctgt tcaaaggcat ccccttggaa agtaccgatg 1440 gagagcggct catgaaatcc ccacattgca caaacccagc actttgtgtc cagccacatc 1500 atatcacagt atcagttaag gagcttgatt tgtttttggc atactacgtg caggagcaag 1560 gagagtggaa catggggtca ctttggatca cttggataaa gcagcagaac ccagagaatc 1620 ccttggctgg gcaagagtcc aagccacaat gatcctgcca agaatcctcc aggatagttt 1680 tgtaaaatct ggagtcttca atgtatcaga acttgtgagg gtatctagaa cactggagtc 1740 aactttccaa ttggagaaat cccaagccaa ccatactatc atgacatgaa ctcgggggtc 1800 aatcttcaga ggtctttgtc ttctccacca agcagcaaat atccatagat gaaaatatgg 1860 aaccaagtcc tacaggagac ttttatccct ctccgaattc accagctgct ggaagtcgaa 1920 catggcacga aagagatcaa gactatgaag aagcccgaaa agccattgtt cagctctaca 1980 tctccacaag actcctcccc aagattgagc acttttcccc agcaccacca tcccggaata 2040 cctggagttg cacacagtgt ccacctccac cctcaccgtt gccatttcca acacaagcta 2100 ttcttcctcc agccccatcg agctacttct ctcatccaac aatcagatat cctccccacc 2160 tgaatcctca ggatactctg aagaactatg taccttctta tgatccatcc agtccgcaaa 2220 ccagccagca gtggtaggga aagtgcctgg ccatttcact cctgtcttgg caccctctcc 2280 ccatcccagt gcagtgcgac ctgtgaccct gaccatgaca gatactaaac ccatcactac 2340 atccactgaa ggtgaggcag cttcacctaa catctcaagc caatcgatat gtgggactaa 2400 gcccaagaga cccatccttc ctacatcagc aacagggacc atgaatcaaa acggcaggca 2460 tttatacccc agtaccagtg aggatacatt gggaattact tggcaaagag cttggttcct 2520 ttccaagtat caaataggac acccatccta ccggcaaatg tccaaaatta cggtttgaac 2580 ataatcggag aacctttcct tcaagcagaa acaagcaact gaggggaaaa aatgaaatac 2640 aacactagtt taagaatttt ttttaaaaaa aaggaaaaga ggaagactgg acaaaacaaa 2700 caaaacaaaa agggagaaag gaaggaaact gaagaaagaa gataatagac cagcaatcgc 2760 agcacttaca atcactaatt cccttaaggt tgaaactgta atgacataaa aagggtcgat 2820 gatatttcac tgatggtagt tcgcagcccc tgcaaagtag cctttgttac atgaagtccg 2880 ctgggaaata gatgttctgt ctctatgaca atatatttta actgactttc tagatgcctt 2940 aatatttgca tgataagcta gttttattgg tttagtatct tgttgtttac gcatggaatc 3000 actattcctg gttatctcac caacgaaggc taggaggcgg catcagaggt gctgggcgtg 3060 acagagccat gagccagcca ttttataagc actctgattt ctaaaagtta aaagaaatat 3120 atatgaaatc tctg 3134 // ID KA520107; SV 1; linear; mRNA; TSA; MAM; 313 BP. XX AC KA520107; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27135 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-313 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-313 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; deb82693fbc5c3ac67180ef8a8cafc16. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..313 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 313 BP; 84 A; 70 C; 89 G; 70 T; 0 other; gaaaccattg aattggtcaa tgatggttct ggtctgggct ttggcatcgt aggaggaaaa 60 gcaactggtg tgattgtgaa gaccattctg cctggaggtg tagctgatca gcaatgcagt 120 ggagaccaca tcctgaagat tggtgataca gatctagcag ggatgagcag tgagcaggta 180 gcccaagtcc tcagacagtg tggaaacaga gtgaagctga tgattgcaag aggtgccatt 240 gaagagccca cagcacctac ctctttgggc accacccttt cctcatcccc agcttctaca 300 ccagaaatgc ggg 313 // ID KA520108; SV 1; linear; mRNA; TSA; MAM; 529 BP. XX AC KA520108; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27136 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-529 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-529 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; 58720fd3589c207f3a5bedd63e948ef2. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..529 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 529 BP; 132 A; 117 C; 134 G; 146 T; 0 other; ctaacagaaa agtctaggtg agttcatcgg gtgctcggag acagaggatc ctgtgctggc 60 aatgactgat gtgggtcgga atgcagagga agttcaagga cctttggcta tgtgggaagc 120 cgatattcag aacatagagc tggagaaagg gagccaagga cttggtttta gcattttaga 180 ttaccagtcc agcaagcact gtgatcgtca ttcgttcttt ggtgcctggt ggaattgccg 240 aaaaggatgg acgacttctc cctggagatc gactcatgtt tgtcaatgat gttaacttgg 300 aaaacagcag tctcgaagaa gctgtccagg ccctgaaggg tgcaccatca ggaactgtga 360 gaataggagt tgccaaacct ttgccttgat gctgacttag ctttgagtct cagtactctc 420 ctgataatga cagtatctac tccactcaag cctctctttt atctcttcat ggcagtgctt 480 gtagtgataa cctgaattat ggtccctccc ttccatcttc tcctcccaa 529 // ID KA520109; SV 1; linear; mRNA; TSA; MAM; 552 BP. XX AC KA520109; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27137 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-552 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-552 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; a9800f1fb9ca011bf87bafd315296afe. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..552 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 552 BP; 169 A; 101 C; 161 G; 121 T; 0 other; aaaccttcag ggttttacca atcaacaagc agtggaggtg ttgcgacaca cggggcagac 60 tgtgcacctg acgctcatga gaagaactaa gcaggatgct gaactggcgt cgcgggagga 120 cgtcacaaaa gacgcagttt tgtctcctgt taatgcaaat gttagcaaag tggaagatga 180 agattcttta tctctgagga gaaacgccag catattacca attgaagaag aaggtaaaca 240 cacggaacca gagagaagaa atagaagatg ctcaacaaca ggaagctgcc ctgctgacca 300 agtggcaaag gattatgggg attaattatg aaattgtgga gcaagttcag cgagaacagc 360 gggttgggga taagtctgga agcaacagta ggccatcatt ttattcgatc tgtcctcccg 420 gaaggtcctg ttggacacag tgggaagctt ttcaggagag atgagctgtt ggaaaactct 480 acttggggag aatcaccagg atgtggtgac tgttttgaaa gagctgccca tagaggtggc 540 aatggtgtgc tg 552 // ID KA520110; SV 1; linear; mRNA; TSA; MAM; 524 BP. XX AC KA520110; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27138 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-524 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-524 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; d193e7e03a1d4cb0cd357ee82b817bf4. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..524 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 524 BP; 178 A; 68 C; 104 G; 174 T; 0 other; tatatacata tatagttttc tccaaaaatg ggcttcatga ttgagtaaaa tagcagcaat 60 aggaaagtaa aatgatggcc ttgtcctgta ttgactgtgg tttctctaga aagcctccat 120 gctaaccatg caggagcgtg gaagggtctc tgaactgtta gtgctggtac taagggatgc 180 tttgctgaaa atgtgtctgt gtgctgtgca attggttttc agttagtatt aatcttaatg 240 acagagaaaa aaggaaaaat taaggggatt aacataactt aatttcattg ccttatatta 300 acatcttata atacaatagt ttaagactaa gggaaacaga tggaactgtt tattgagaca 360 actggtgagg aattatcatg tgttcattcc cattttagag catgaaactc ctacattaga 420 atatataaag tcattttgaa tattatctat atttgtaaca aaagtagtgt acagatattt 480 tattacagca cttttgtgta aatgcagaat tgaagtgaat aaat 524 // ID KA520111; SV 1; linear; mRNA; TSA; MAM; 1368 BP. XX AC KA520111; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27139 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-1368 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-1368 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; d48a55a22753185bf3d6d2024a7b6ccb. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..1368 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 1368 BP; 400 A; 277 C; 372 G; 319 T; 0 other; gcccaaaatc tcttgcaaag acaggatgag agtgcgcctt cagtggactt gagcatgggg 60 ccggcttctg gctttaccat gaatgactat acacctgcaa atgctattga acagcagtat 120 gaatgtgacg gcttaagagc gtggactgaa tctcacctac caaatgaagt tatttcaagt 180 gcagagctga attctcctgt gctgactgat tcgactggaa agcttaattc cacaaggttc 240 cctggcctct gctgctgagt gtgtcatgct ccaaaataca cccagagaat ctttcgagag 300 gactattgtg atagcaaaag gcaactctag cttagagtgc taataaagat ggcttggggg 360 tgattgttcg aagcattatt cacggaggtg ccattagccg agatggtcgg attgctgttg 420 gggactgcat cttgtgtatt aatgaagaat ctactatcag tttaaccaat gcccaggcac 480 gagccctgtt gagaagacat tctctcattg ggcctgacat aaatacccgc agaatatatg 540 gaagagttca aaataagctt ggggcagcaa tctggaggaa taatggcact ggatattttt 600 gcttcctaca ctggcagaag ctaccagagc gagaagaagg agagggggaa gaaagtgacc 660 ttcaaaatgc agcctacagc aactggaatc agcctaggcg ggggcgagaa ccaagcaaat 720 ccttgggcat cagcattgtt ggtggacgag ggatggggag tcgtctaagc aatggtgaag 780 tgatgagggg cattttcatc aaacatgttc ttgaagatag tccagctggc aaaaatggaa 840 ccctgaaacc tggcgataga atagtagagg tgcccaggac ctcagagatg caagccatga 900 acaagctgtg gaagccattc ggaaagcagg caaccctgta gtctttctgg tacagagcat 960 tataaacaga ccaaggggtc agaatcagag ccagaaaagc ctcctctgtg ccactcgcct 1020 ccaccccagc ctccagtgtt ggcagaaatg agtggggatc acgctctgtc atctgcaaat 1080 gaaacctcag aagatgtgga tgaagaggat gagtttggtt acagctggaa gaacgttacg 1140 gaaccctcac aggcgagctc cacatgattg aactagagaa aggtcgtagt ggtttgggtc 1200 tgagtcttgc tgggaacaaa gaccgatcga ggatgagtgt ttttatagtg gggattgatc 1260 caaatggagc agctgggaaa gatggtcaac tgcagattgc agatgagctt ctagagaatt 1320 ttatatggaa gaagtcatca gaatgcttca tcaatcatca aatgtgcc 1368 // ID KA520112; SV 1; linear; mRNA; TSA; MAM; 991 BP. XX AC KA520112; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27140 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-991 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-991 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; be3dfd581b2b346ca5e83cd3f2dfa19d. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..991 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 991 BP; 258 A; 249 C; 273 G; 211 T; 0 other; ccctacttta tttgtgccac tgtgaaagaa gggagaaaaa tcatcgtaat aaatagagag 60 acttaagaga gaaagagaca tcagtccaga cgagaaatac taggagcaac agaaatacca 120 tcaagccatt caaaataagc ttccttttaa aaggttgtca tactaaaaaa aaaaacaaag 180 atatagcagc ggagaaggag gataaataca agttaattgc acaccaatcc catgcataaa 240 actggggcat tagccaaagc agtagtattc agaatccaat ttgggacgct tgtacagtgc 300 gtgtgagtcc cctatgactg aactgtcact gaactggtcc aagtctgagg gagtgtggtg 360 gcctgggacg tcatctgcca aagtgtccag gtagctcccc acggagatgc cgtcgagccc 420 gtcactgcca tcatggaggc tggtgcagct gccatgtaag gaggtgctct gactctccag 480 taagctgcac aggctgccac tcagactgct gcctcggctg gtgatggtgg ctttctcttc 540 aatcatccac ttgatggact cgatgctctc attgatgagg agcaactggc gcatgagctt 600 cccgtctgtg gctctgaggt taactgagga ggtgaatctt ggtttccagc ctctccaggg 660 tgctactgga gtggctgggt cgtggggagc cagaggttgg ggaggatgaa gaggaggacg 720 acaaggagag agggaaactg cacgccgccc ccgctccccc ctccggggtc tctgtccctc 780 tccgggggaa ccggctcctc cccacggagc gagcgcacta ggctctcggg cactttgcgt 840 cccagcttca gctcgatgtc tctgaggtcg ggtagcgggc cgtcttccat gacttttcaa 900 gaacgatgaa aatggtaata aaatactacc gatgagagtc agcagcggcc tccaaggctg 960 cctggagatc gacacacccc tcccaagccc g 991 // ID KA520113; SV 1; linear; mRNA; TSA; MAM; 2086 BP. XX AC KA520113; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27141 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-2086 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-2086 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; 3fb504195963a334f754adf26e77e4ce. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..2086 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 2086 BP; 586 A; 450 C; 545 G; 505 T; 0 other; atgcggtgag tcagatggct gtatgtcctg ggcatacagt ggaacccttg cctgctacct 60 cggagaatct ccaaaataag gagtgttact acttctgatg cagttgttga cctcagtttg 120 ttgacaaacg tgcaacatct agaacttcct aaggatttgg gcattgccat aagtgaagaa 180 gatacagtca gtggggtcat cataaagagt ctaacagagc atggggcagc agccaaggag 240 aaagttggag atcagatctt ggctgtagat gatgaagttg ttgttggcta tcctgttgaa 300 aagtctgaaa acagcaaaga caaaagtgaa attgacgatt cgtgctgaga atccagactc 360 ccaggctact acttcaggaa ttggtacagc caacggagag aaaaagagca gcccccagtc 420 tccagcggcc ccaccgtcta gctctccgga accagagccc atgcgaagcg gcttgttcgt 480 caacaccagc agtctttgct tctgatcctg caacctgccc catcatccca ggctgtgaaa 540 caactattga gatttccaaa gggcggacag gactgggcct gagcatcgtt ggggggtccg 600 acacactgct ggtgaggatg cagtatccat gaagtttatg aggaaggagc agcatgtaaa 660 gatggaagac tctgggctgg agatcagatt ttagaggtaa atgacctgag gaaggccaca 720 catgatgaag caataaacgt cctaagacaa acaccacaaa gggtgcgcct gacgctgtac 780 agagatgagg ccccatacaa agaggaggac gtgtacgaca ccctctccgt cgagctgcag 840 aagaagccag gcaaaggcct ggggttgagt attgttggta aaagaaatga gagtgtttgt 900 gtccgatgtt gtcaaaggag gcattgcaga tgctgatggg cgactgctac agggagacca 960 gatactaacg gtgaatggag aagacgtccg tcatgcaaca caggaagctg ttgcggctct 1020 gctgaaggga gaaatccaca cagtaacctt ggaagttgga agagtcaaaa ctggtccatt 1080 ccattcggag aggagacctt ctcaaagcag ccagatgcag cctgtcctca ttcgcttttc 1140 cattttcggg atccggtaca tctgagttac tggaaagtag ttcaaagaag aatgcacaaa 1200 tacagggatt aagaactgtt gaaattaaaa agctcattgg gcatcagcat tgctggagga 1260 gtgggcagtc cactgggtga tgttcctgta tttattgcca tgatgcaccc gaatggagtt 1320 gcagctcaga cgcagaaact cagagttggg attgtcacta tctgcggcac atccactgag 1380 gggatgactc acacccaggc agttaactta ctgaaaaatg cctctggctc cattgaaata 1440 caggtaggag atgtgagtgt ggtcacaggt catcaacagg agcctgccag ttctagtctt 1500 tcttgcactg ggctgacgtc aagtagtata tttcaagatg acttagggcg taagtctatt 1560 accctagacc gaggaccaga tggcttaggc ttcagtatag taggaggata tggcagtcct 1620 catggagact tacccattta cgttaaaaca gtgtttgcga agggacgaag atggccgtct 1680 aaagaggggt gatcagatca ttgctgtcaa tgggcagagt ctggaaggcg taacccatga 1740 agaagccgtt gccatcctta agcggacaaa aggcactgtc actttgatgg ttctctcctg 1800 aatttgctgc cagaattgag ccacttcaac ttctccctca catcccacac tataaagaga 1860 gtgatcctgc acattcttcc caggctgtgt tcactgggct cttcaatact gtaggagtca 1920 tatggaaatg attttcttac tgacacccta gcatcacatt cccattctct ttatattttg 1980 tgatgcaaac tcaaagagaa gggctctttg tttgcataga taaagctggt ctttcttcct 2040 gaagatacct gacattttat aatcaggtgg gcaaatttta atgtgt 2086 // ID KA520114; SV 1; linear; mRNA; TSA; MAM; 810 BP. XX AC KA520114; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27142 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-810 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-810 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; 836e155b491b465ca3a914685937a5eb. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..810 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 810 BP; 258 A; 175 C; 255 G; 122 T; 0 other; gctgcgtgcg cctccgcgcc atggctggcc tcaactccct ggaggcggtg aaacgcaaga 60 tccaggccct gcagcagcaa gcagatgagg cggaggaccg cgcgcagggc ctgcagcgcg 120 agctggacgg cgagcgcgag aggcgcgaga aagccgaagg tgatgtggca gctctcaatc 180 ggcgcatcca gctcgttgag gaggagttgg acagggctca ggaacgactg gccacagccc 240 tgcagaagct ggaggaggca gaaaaggctg cagatgagag tgagagaggg atgaaggtga 300 tagaaaaccg cgccatgaaa gatgaggaga agatggagat tcaggagatg cagcttaaag 360 aggccaagca catcgctgag gaggctgacc gcaaatacga ggaggtagct cgtaagttgg 420 tcatcctgga gggtgagcta gagagggcag aggagcgtgc cgaggtgtcc gaactaaaat 480 gtggtgacct tgaagaagaa ctcaagaatg tcactaacaa cctgaagtca ctagaggctg 540 catctgaaaa gtattctgaa aaggaggaca aatatgaaga aattaaactt ctgtccgaca 600 aactgaaaga ggctgagacc cgtgccgaat ttgcagagag aacagttgca aaactggaaa 660 agacaattga tgacctggaa gaaaaacttg cccaggccaa agaagagaac gtgggcttac 720 atcagacact ggatcagaca ctaaacgaac taaactgtat ataaccaaaa cagaagagtc 780 tagttccaac agaaactcca gagcgccgtg 810 // ID KA520115; SV 1; linear; mRNA; TSA; MAM; 343 BP. XX AC KA520115; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27143 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-343 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-343 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; 7fd560a3eaacb424fc0f7c53bc83ae63. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..343 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 343 BP; 64 A; 85 C; 93 G; 101 T; 0 other; gttcttggag gagacgttgt gagcaatctc agcacagtaa gatttgttgc acatcagcag 60 cacctcaagc tccttgacgt tgtggaccag gaacttccgg aagccgctgg gcagcatgtg 120 cttggttttc ttgttgctcc cgtaaccgat attgggcatc aagatctggc ccttgaatct 180 tctgcgcacc ctgttgtcaa tgcctctggg cttccgccag ttccgcttga ttttgacata 240 tcggtctgat tgatgcctaa tgaacttctt ggtcctcttt ttgacgatct taggcttcac 300 gaggggtctg agggcggcca tgatgccgag tcagagatgg ctg 343 // ID KA520116; SV 1; linear; mRNA; TSA; MAM; 321 BP. XX AC KA520116; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27145 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-321 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-321 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; 431725336587d988d8db9515e7dc376f. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..321 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 321 BP; 66 A; 89 C; 86 G; 80 T; 0 other; tctcagtgag gtcctccttg gtgaacacga agcccacatt cccccggatg tgaggcaaca 60 gtttctccag agccgggttg ttttccagat gccctcggat ggccttgcgc atcatcgtgt 120 tcttgcccat cagcaccaca gccttcccgc ggagggacat gtggatctgc tgcatctgca 180 atgaagcatt ttggataatc atccagaagt tggatgatct taaggaagta gttggacttc 240 caggtcgccc tgtcttccct gggcatcacg gcggtgcgtc agggattgcc acgcagggtt 300 taaagacgat gtcactcaca c 321 // ID KA520117; SV 1; linear; mRNA; TSA; MAM; 587 BP. XX AC KA520117; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27146 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-587 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-587 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; 100877be0f666a3dfafdfb1431686f7a. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..587 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 587 BP; 135 A; 159 C; 161 G; 132 T; 0 other; ctgaggctca ttttcttaat atgggttctt tcctttcaca gccccttgag ccggtcaagt 60 tcgttgcgcc ccctgaggcc acctccaccg ctaagcccac acaggtcact gcacccggag 120 tgccagcctc tccagcgcag caagcccctc tatttaataa ctgctggagc tgtcgcgtgc 180 tctccgggtc ggggctgata ggggcaggcg ggtatgtgta ctggatggcg cggaagccca 240 tgaagctggg atatcccccg ggtcctggga ctattgcgca gatgatcttc ggcatcagtg 300 agagtctgct ggggtgtggt catcctgtca gaccccaaag ggaaggcctt ccgcactgga 360 tgaaagtgcc accagtgaat ttgtcatcct tccacgtccc cgtgacacac agaggaagaa 420 tggcacttat aggtgttctg gacagaaatg cggacattga cagacttcag tccggcagat 480 acgacatgac tgaaaagaca aacagggatt gtcattcatg ggccatgact gtttatggca 540 ttcttcgcag gttccacagg gaccaataaa tccctgagaa aagagaa 587 // ID KA520118; SV 1; linear; mRNA; TSA; MAM; 1265 BP. XX AC KA520118; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27147 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-1265 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-1265 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; c54d20770e5baae45142b69a30aa28dd. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..1265 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 1265 BP; 295 A; 354 C; 285 G; 331 T; 0 other; tgctaagaag tgaaagcaag actaggagac agcttcagac tgtggtatcc aattaataat 60 gcgtattttg cggttctggt gaccacactc tggggagcct gattttccac tgtcagagac 120 acagcctgtc acctacccca gtgaaacaca cggcacagcc ccaggctgtc cttcctcggt 180 cctcttctgc ccaagtcatt ctgtggcctg cagagcaatg taggtagact actgcctctt 240 ctgacacttc ttctggaaag agctcttcaa gaaagtgcgg tagacggggt catccacgta 300 ttcattcttg aatctggagc tcagcactct ctgtctcttt ttctcccctt ggattatgtc 360 tgttccataa aacgtgtctt caaatcgcat gtcagaagct gtggaagctt tcactctctt 420 aggtaactct tcgtctaaag tgtagatgtc ctctctcttc attgctatct gggatccatc 480 ttcaaattca acgtacatgt gggcaacatt tgatccgaga tacttggccc cgtagagttt 540 gccatcaggc cacttgactt gcacgacttc cccctcggca ggagggccta gcttcacaca 600 gtctcggcta atatcctcag ggaaggtgtc cctgctgaag gagccgtcat caaacacgac 660 ctcatagaag gtctgcgccg tcacggcgat aaccctgcag ctgtagtacc gggtgttccg 720 atgcttcgtg atgaccgtct gccccacaga gatgcccttc tcaccagcct tggacttgtt 780 tgggttgatc ttatgtcgga agcacgtgat attcaccaca tatggccaat catcaggctc 840 catcagcacc ccagcagcat gagcacatgt gacgtggaag gaggccgggc aacgcccgta 900 ggaacactgg atgcaggctc cagagacctt cttaacccgg tgtctgcaga acatgcattt 960 ttttaacctc tgtaaaggta ttctgcctac atctatctgt gtcctttctg ggacattagt 1020 aaaccggact tctgggactg caacggcgca catgacatgg gcccacttgt tcttagtttc 1080 cttaagagca ccccctctca aattgcagag acagcactct gtccatgcat ttctcttgca 1140 ccgggcacat agccatccat cacagatctc atgagaaggg attccataac aacttgccat 1200 gaacccgtac gcgacacttt gcacaggaaa tcagaaggct tgttccatcc tcttccagga 1260 aggca 1265 // ID KA520119; SV 1; linear; mRNA; TSA; MAM; 1025 BP. XX AC KA520119; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27148 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-1025 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-1025 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; 85f7f9752cb4a65f4e08ce3427e1a985. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..1025 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 1025 BP; 201 A; 276 C; 225 G; 323 T; 0 other; cttagtcttt cctcctgaag tcaccacttc atctaatttt gtctcccatc tagaatcatt 60 ttcttcattg ctgctatctg ggtagtaggg catgagcaga gcacaaatgg cacagtgtgg 120 ctccattctg cccatggctg tgttatactc ttgctcggcc acaaagtttg gggacttcgt 180 ctgccaaagg tgaaccagag gctttgccca agactcggtt tcttccactt cttcctcaat 240 cgatggaacc tcaggcaact cttcatcact cgttgcctgc tgcttcacca gggtcattgg 300 ggatcttgct ggaggcttac taagtgggtg gcgccaactt ttagcagttt tggtttcacc 360 ttctgttcta cggggacttt gaagccattt ctctggccac tggggaccgc tgggacttcc 420 ccaggttcaa ggccactccc acggctttcc acatcactct cttctccctc agtaaaagca 480 ctgctactct ctgccacaga ggaatatgac tcaggtgact ttggccatgg aagcttgcgt 540 ggctctgatt cctcagatgt cacttggcca ctaaatatgg actcgtcagc ctcgctgaga 600 tttgaaggtg gaattgcagc acaagtttgt tcagcctcag ctttgatttt ctctgctaca 660 gatgtgttta ggcagacgtt tcagaatctg atattatctg acaaattatg atccagctgc 720 atcctgctaa cagaggcctc tccctctgaa ggtgcttctg tgtttgctag tttcactgct 780 tcttctggct ttccatcatc cttcagatca cctggatccg ggtcaggagt gggtccctct 840 gcctcaccaa ctatagctga cagtttctca tcctcctcat tcttaggcct cttagagtga 900 gaactagtac actggaagct ccctggatgc ttttcttact ttcctcctcc tctgcagcca 960 tgcttttact tcaggggtgg attctggagt aggccttgtg tgatcaatgg tatatatatc 1020 ctttc 1025 // ID KA520120; SV 1; linear; mRNA; TSA; MAM; 438 BP. XX AC KA520120; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27149 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-438 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-438 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; eb5ec150d7a37e8801591d4e1c91607b. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..438 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 438 BP; 109 A; 115 C; 85 G; 129 T; 0 other; aatgctgtag aggtccatat cctcggtgtg ccatgcaaat gtggttttcc acatgccaaa 60 atatagataa ggggtgttta caccctcaat agaaatacca cactcttcct caaccacatc 120 caagaccgtg tttaggcgag ctatgttcca ttcatccaca ccctcaatca tatatgctcc 180 cattaatgtc tgcaccataa atgggtgcca cgaaggttaa gttcttccag tacttgcgct 240 ccaaatcttc ataatccaag tatcttgggg tacagtaccc actgttggcc agctgcctga 300 actccttcac tgtcatggct tttttctgga tgttgtattg agtgaacagt cctgactgcc 360 ctgtgaccat ctgctgaatc ggagctggaa taagtaagtt gtcaatgtca tcatagcact 420 gccttggctt ccactcct 438 // ID KA520121; SV 1; linear; mRNA; TSA; MAM; 533 BP. XX AC KA520121; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27150 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-533 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-533 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; 64a815552a22f998a98bee1b470758c2. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..533 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 533 BP; 111 A; 166 C; 143 G; 113 T; 0 other; agtacatctg ccctcatgca ctcctggttt ggcctgatgg ggctgaatcc agatgcgcca 60 gaagatgagg ctggcatcaa gaaagcagca gagaacatca aggccttgat tgagcatgag 120 atgaagaacg ggatccctgc caatcggatc gtcctgggag gcttttcaca gggtggagct 180 ctgtccctct acaccgccct cacctgcccc caccctctgg ctggcactgt ggcattgagc 240 tgttggctac ctctgcatcg ggccttcccc caggcagcca acggcagtgc caaggacctg 300 agcatccttc agtgccggac ctcatggttc ctgtatggtt tggggccctg acagccaaga 360 aactctggtc cattgtcaca cttgccaggg tccggttcaa gacgtaccca ggtgtcacgc 420 atagcccctg tcctcaggag atggcagctg tgaagaagtt tctcaagaag ctgctgcctc 480 ctgtctaacc agagttgccg tcccccagca cagtccccct gctaacacgg gac 533 // ID KA520122; SV 1; linear; mRNA; TSA; MAM; 855 BP. XX AC KA520122; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27151 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-855 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-855 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; 9c0be672bcbcfcdbfc7883de8417c9da. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..855 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 855 BP; 291 A; 181 C; 164 G; 219 T; 0 other; tcactaaaag cagtttgact agtacagaag aggcttttca tgaaatttac aactagatca 60 tctgaatacc tcttttaagt tgttctcatt agtagtcaac ttgcataaaa caccagaaaa 120 aagcacaatg gagctcacaa aatgggctaa aaaatgaacc tgttcttgca aaacacacac 180 tgaaatggaa gaagacacta aaaatgtatt atgcacacta cagaagctgc gttcattcca 240 acaatctcaa gtgtcacttc cttttctaaa atcaaattac atgaaccagg cacaactaat 300 atttgggagg cagtgtgtag ctaaaatttc atttaacttc tgtcctgagg tagttgcaaa 360 ataaatcata acttggatat caactagagc tgaggctttg acttcttact cattaaaact 420 agttgttaac tgacaagaac taccttttga tatttaaaag acagttgaga aatgggcctc 480 ttactacaca cacaagatga tggctatgta ggaaagagga ttagctgctt cagaacgtga 540 gatatggtcc accattgctt ccacccctcc caaccacccc caaccatttt agattcctta 600 ttgtccaaaa agccatgggg agcaacacag tagtagacaa atcatcgtcc tttgctgtag 660 ccagggaaga aaaggtcaag tagagtctgc agaaccgcat tgggaatcat gatgtaattc 720 tggccaagat catgccggca agcaggacag gagaacactt gagccttaaa ggagcgctgc 780 aaacaatctt tcagacattg tggaggcaat ctgttgtcac aggctggtaa actagctcct 840 ggcagcatac acaca 855 // ID KA520123; SV 1; linear; mRNA; TSA; MAM; 873 BP. XX AC KA520123; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27152 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-873 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-873 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; 2c06c7ef8c45de65357b57db377dbc23. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..873 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 873 BP; 229 A; 199 C; 171 G; 274 T; 0 other; gatcttgaag atttcattta tgaatcttat ctgacagtca tttaattttc cttcagaacc 60 cgaaaacagt tacacgaagt tcttttttgg tccttgagat tgtcttcaat gtagtgattc 120 ctgcatcaaa ccaaaatcct ctattactag gactttctac attgtaatta accattacca 180 catcaccaac atttagttca ttccatctca aagtggttct agctcgtggt cgaagatcct 240 tgacatttat ttctacagta ccactttccg gatatatact cgatatgata aataacgtct 300 tcatcagcag caacagaatc tgaattagat gtagagggta cattgtccaa tttttttgtg 360 ttctctttgg aattatgatt tacatttcca ttagtccttt tacaagaact gccattcttc 420 agtggagttt tgccacgtga gtgtccatca gaagctctag taacactatg tatacgtgct 480 tcaaaccaag caccaagggc gacatctctg gcatccacca attcatttac atagtccaat 540 gccaggatca atagctgact ggaaggtccc acccttgggg ttttctttac tttaggtgga 600 ctattagaat agggtttggc ctgtatatca gtctgttttg atgtgctagg aaggtcaggg 660 tctgggcgaa ctagtagctg aattatatca ttaagtccaa catcatagtc aaataaagta 720 tatccatttt ccaactgtgc cccggtagaa gaggcgctgg cactcgggcc gtacgtcgaa 780 cagcgcccac acccgctcgc gcagttcctc aattgtggct ttccgagaca cgtcctcaat 840 ggtgcgcgtc tgcgagccgt cgatggtgcg aac 873 // ID KA520124; SV 1; linear; mRNA; TSA; MAM; 1101 BP. XX AC KA520124; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27153 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-1101 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-1101 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; 404a276df2454252175c5f4bb93bcab1. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..1101 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 1101 BP; 277 A; 285 C; 210 G; 329 T; 0 other; cttctggttt tgatgatctt ctctgattag atgttgctgc tgaggggtta gttggaaagc 60 ctcaactgct tctgctgaat ctgatggttt gaggactttg gaggcacttg gacaatcatt 120 gcagatggcc tttttgaggt tcctctggcc ttctttgact gtcctttggt cttcttccct 180 tccttatcag aagggtaacc tactggataa acgaagacat agtctccttg accgttctat 240 tccttctgag gtccaaggag caggttcaac atcatctctc cttaaaagat agcgccaaac 300 caagaatcca tggcttgatg aaatctctgg ccagtatttc accacaaatg ccatcatatc 360 tgttgccttc ttcaggagca tatttgctga tcttcctccc tttaaaactg cgtatcactc 420 tgactggctt accagctctc caattccgag actctgctcc aattttatca tccaatggag 480 catcacagtt tagggccaat gccccatgtt tgttaatgtt tgatcagccg atggtgcacc 540 aattctttta ttaccagcaa gatttttacc accactccca gtgtatgtga attcatcacc 600 tcggtccatc tgcaaatcca ccagccagga cgagcgagta agcaccatca ttactccgac 660 catgaattcc accaacatgg ggtcgatgga cacctgcttc actcacctct aaatctccaa 720 gttgatccaa caggaactcc aggaataggt ccataatgat tggaaggaac aatagtacat 780 tctctagtgc gaccaacaca ggccattccc ccaatctctt cggctttcag tactagctga 840 tggcatcttg gctttctttt tactcatctt gagcctttca ccagccttta caacttcact 900 agaatcagtt ttacaggaag gacaatacca gttcctcttc agggacctta tccaaaggag 960 gattcaggca gtaaatatga taggccatgt tacattcatc acatagaact tgcatgttgg 1020 gttcctgttt tccaccacat acatgacagg agcaagaacg gcatttctta tttgggtctc 1080 caccacagga gtcacattca g 1101 // ID KA520125; SV 1; linear; mRNA; TSA; MAM; 442 BP. XX AC KA520125; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27154 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-442 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-442 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; 80e062bdbe8e1fc1244645b5a8e22a8a. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..442 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 442 BP; 159 A; 63 C; 111 G; 109 T; 0 other; ccaataggtt tatgtaaaat tctacagcat caggtagaaa aagcagagta aacatattgg 60 catgagagat caggtgatgt agaagtgagg tcagggagta caaaaggaca cagttggtca 120 aaagaaaaga ggaaggagca agtcacacat tccatagtaa gcagggtcat tgggaaatca 180 gacaataaaa ggaattgtgc atgtgagaag aaaggattag agaaaatttt gtttaaggtg 240 atgaatatat caaaagtcat gggttcctga aagtcagggt cagaaggaca tatgagggat 300 agccagttat tgaaattata atattaatcc tatgtcccat gtaagctcta gtaggttgag 360 gactcctggc ccttccatag cacttgcagt ccatggtact tggatgcctg aacatatgtt 420 gtggctcaat gcttcaaaaa aa 442 // ID KA520126; SV 1; linear; mRNA; TSA; MAM; 511 BP. XX AC KA520126; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27155 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-511 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-511 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; f41a926a9d2b07458c470e54deb62454. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..511 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 511 BP; 91 A; 169 C; 142 G; 109 T; 0 other; ctatgagacg agccacgggc ggaggcccag tccagaggtt gactccggct cagtcggtga 60 tgatgagctc gtcgacgccc cagtcttcgt agctcccgtc gggcaggtag cggcgaatga 120 tgatggggat cttccgggcc ttgagctcct tcatggcgat cagtaaggga tctgtctccc 180 cctccagctc caccatcaca ggggcgcaca tcgcaatctg aagggctcgg gtgcccagca 240 cacgggctcg ctcatacttg gtcatatatg gtgtggtgat tcgtttctgg ttggcctgcg 300 gtcgctctcc agaagggaga atctcaacgt tctcctggcc ctcctcctcg gcattctcca 360 agtcatcgag cccttcatcc tcctccacgt catcaaagtc gtctccatca aaattgtcct 420 cgttgtctga catgacgccc gcacggcagc caccgggttc cgcgacccag acccgcgagg 480 agaccggcga acagcgtacc tccgcctcgc g 511 // ID KA520127; SV 1; linear; mRNA; TSA; MAM; 2602 BP. XX AC KA520127; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27157 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-2602 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-2602 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; fdb77a820faf43749a495559fbdc6c1e. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..2602 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 2602 BP; 786 A; 454 C; 577 G; 785 T; 0 other; cgggtctgct ggagtaccgg cgaccgtgtc gggaaagcat gagttttacc agcttctgaa 60 gaacctgatc aatccaagct gtatggtgcg gcggcaggca gaggaaatct atgaaaatat 120 cccaggtctg tgtatccaag ggtgagggct gcagcctgta ctacacttgg acagatggct 180 acagattttg cacctaactt ccaaaagaaa ttccatgaaa ctgtgattgc agctctgttg 240 cgtactatgg aaaatcaagg taatcagcgt gtacagtcac atgcagcttc tgcgcttatt 300 atttttattg aagactgccc caaatcattg ctggttctat atttggatag tatgttaaga 360 aatctacatt ccatcttggt gattaaactt caagagttga ttcgcaatgg aactaagttg 420 gccttagaac agcttgtgac aaccattgcc tcagttgcag atacaataga agaaaaattt 480 gtaccatact atgatatatt tatgccctca ctaaagcata ctgttgagct tgctgttcaa 540 aaggaactca aacttctgaa aggaaagact attgaatgca ttagccatgt tggtcttgct 600 gttggtaagg aaaaatttat gcaagatgca tcaaatgtga tgcagttatt gttgaagaca 660 caatcagact taaataatat ggaagatgat gaccctcaga cctcttacat ggtttcagca 720 tgggctagaa tgtgtaaaat tcttggaagt gattttcaac agtaccttcc actggttatt 780 gagcctctta ttaagactgc ttcagctaaa cctgacgttg ctctcttaga cacacaagat 840 gtggagaata tgagtgatga tgatggatgg caatttgtaa atcttggaga ccagcaaagt 900 tttggaatta aaacttcagg acttgaagca aaagcaactg cttgccagat gttggtttat 960 tatgctaagg agttaagtga aggatttatg gactatacag aacaagttgt aaaactgatg 1020 gttcctttac tgaaatttta tttccatgac aatgttcgag tggcagctgc agagtccttg 1080 ccttttctcc tggaatgtgc aagaattcag gggccagagt atcttgcaca gatgtggcaa 1140 ttcatatgtg atcccttaat caaggctatt gggacagaac ctgatacaga tgtactctca 1200 gaaataatga attcttttgc aaaatccatt gaagtaatgg gagatgggtg ccttaatgat 1260 gaacacttgg aagaactggg agaaatactg aaagcaaaac ttgaagggca ctttaaaaac 1320 caagaactca gacaggttaa aagacaggaa gaaaactatg atcaacaggt tgaaatgtct 1380 ctgcaagatg aggatgaatg tggatatttt gcactcatta tttagtactt acaaggaaaa 1440 gattttaccg tggtttgaac agctacttcc attaattgta aatctaattt gttctaatag 1500 gccatggcca gacagacagt ggggattgtg catatttgat gatatcatag agcactgcag 1560 tccaacctca tttaaatatg ttgaatattt tcggtggcca atgctactaa atatgcgaga 1620 caacaaccct gaagtcaggc aagctgctgc ttatggcctg ggtgttatgg cacagtttgg 1680 tggagatgat tatcgttctt tatgttcaga agctgttccg ctgctggtga aagttattaa 1740 gtgtgcaaat tccaaaacca aaaaaaatgt cattgctaca gagaactgta tctcagcagt 1800 agggaagatt ttgaggttta agcctaactg tgtaaacgta gatgaagttc ttccacactg 1860 gttgtcatgg cttccactgc atgaggataa atgaaagtaa ccacccagtt gtacttggtc 1920 cgaataattc caatctccca aaaataatta gtataattgc agaaggaaaa attaatgaga 1980 ctattaacta tgaagatcct tgtgccaaac gcctagctaa tgttgtacgt caggtacaga 2040 cttctgaaga attatggtta gaatgcattt cccatcttga tgatgagcag caggaagcct 2100 tacaggaatt gctaaatttt gcttgaagca taaatgtaac tccaaataag tgttgtgagt 2160 ggattccatt atgattgaga gagctgttct ctccctgcta agcagtttat attccttccc 2220 agtgtttctc catgattagt cagtgttata ccctctgttt accttgcatg ttttatcaaa 2280 cacagacctt ggtgataacc tgtgcttctg ttgtcttaaa atgtttgtca cctttcttct 2340 atttgatgtg aagtatgtat attgttgcta tttgtctaaa ttcctgatgc tgggcaagca 2400 gtgtgcttgg tgtcagggtg tcctgccgcc taacacaaga tgttaagagt gcacaaagat 2460 gggatagaag aacttccagg acaaactctt tggaattgtg agtgaagaat atagtggcag 2520 gcttatttct cctttatgat actcctagtt ttcatagtaa tgggaggatg ctggtattgg 2580 aaaagagttt tgagatactg ca 2602 // ID KA520128; SV 1; linear; mRNA; TSA; MAM; 3275 BP. XX AC KA520128; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27158 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-3275 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-3275 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; 4756c597395d065d8a384bd14e5034be. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..3275 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 3275 BP; 985 A; 578 C; 722 G; 990 T; 0 other; ccaaaaatgt ggttctatgg gaagttgcac ttcacgtttt ctggcacttt ccggggattt 60 ttgggaacca ggagcggcac gatttggata tcatcaaacg gttgttggac cagtgtattc 120 aagatcaaga acatccagca atcaggacat tatctgctag agctgcagct gcatttgtac 180 ttgctaatga gaataatatt ggtcttttca aagactttgc agacttgctt cctggaatct 240 tacaggctgt gaatgattca tgctaccagg atattcagtg ctagaatccc ttgtcgagat 300 tgcagatact gtacctaaat atttgggtcc ttatttagaa gatactctgc aactgagtct 360 aaagttatgt ggagactcta gacttagtaa tctgcaacgc cagctggcac ttgaagtaat 420 agtgaccttg tctgaaactg ccaccccaat gttgaaaaaa catacaaata ttattgcaca 480 ggcagctcct catatattag caatgatggt tgatctacaa gatgacgagg actgggtaaa 540 tgctgatgaa atggaagaag atgattttga cagcaatgca gttgccgctg agagtgcatt 600 agacagactg gcttgtgggc ttggcggaaa acttgtttta ccaatgacta aggagcatat 660 catgcagatg ctgcagagcc ctgactggaa ataccgacat gctggattaa tggccttatc 720 tgctattgga gaaggatgcc atcagcaaat ggaatcaatt ttagatgaaa cagttaactc 780 tgttttgctt tttcttcagg atcctcatcc aagggtgagg gctgcagcct gtactacact 840 tggacagatg gctacagatt ttgcacctaa cttccaaaag aaattccatg aaactgtgat 900 tgcagctctg ttgcgtacta tggaaaatca aggtaatcag cgtgtacagt cacatgcagc 960 ttctgcgctt attattttta ttgaagactg ccccaaatca ttgctggttc tatatttgga 1020 tagtatgtta agaaatctac attccatctt ggtgattaaa cttcaagagt tgattcgcaa 1080 tggaactaag ttggccttag aacagcttgt gacaaccatt gcctcagttg cagatacaat 1140 agaagaaaaa tttgtaccat actatgatat atttatgccc tcactaaagc atactgttga 1200 gcttgctgtt caaaaggaac tcaaacttct gaaaggaaag actattgaat gcattagcca 1260 tgttggtctt gctgttggta aggaaaaatt tatgcaagat gcatcaaatg tgatgcagtt 1320 attgttgaag acacaatcag acttaaataa tatggaagat gatgaccctc agacctctta 1380 catggtttca gcatgggcta gaatgtgtaa aattcttgga agtgattttc aacagtacct 1440 tccactggtt attgagcctc ttattaagac tgcttcagct aaacctgacg ttgctctctt 1500 agacacacaa gatgtggaga atatgagtga tgatgatgga tggcaatttg taaatcttgg 1560 agaccagcaa agttttggaa ttaaaacttc aggacttgaa gcaaaagcaa ctgcttgcca 1620 gatgttggtt tattatgcta aggagttaag tgaaggattt atggactata cagaacaagt 1680 tgtaaaactg atggttcctt tactgaaatt ttatttccat gacaatgttc gagtggcagc 1740 tgcagagtcc ttgccttttc tcctggaatg tgcaagaatt caggggccag agtatcttgc 1800 acagatgtgg caattcatat gtgatccctt aatcaaggct attgggacag aacctgatac 1860 agatgtactc tcagaaataa tgaattcttt tgcaaaatcc attgaagtaa tgggagatgg 1920 gtgccttaat gatgaacact tggaagaact gggagaaata ctgaaagcaa aacttgaagg 1980 gcactttaaa aaccaagaac tcagacaggt taaaagacag gaagaaaact atgatcaaca 2040 ggttgaaatg tctctgcaag atgaggatga atgtggatat tttgcactca ttatttagta 2100 cttacaagga aaagatttta ccgtggtttg aacagctact tccattaatt gtaaatctaa 2160 tttgttctaa taggccatgg ccagacagac agtggggatt gtgcatattt gatgatatca 2220 tagagcactg cagtccaacc tcatttaaat atgttgaata ttttcggtgg ccaatgctac 2280 taaatatgcg agacaacaac cctgaagtca ggcaagctgc tgcttatggc ctgggtgtta 2340 tggcacagtt tggtggagat gattatcgtt ctttatgttc agaagctgtt ccgctgctgg 2400 tgaaagttat taagtgtgca aattccaaaa ccaaaaaaaa tgtcattgct acagagaact 2460 gtatctcagc agtagggaag attttgaggt ttaagcctaa ctgtgtaaac gtagatgaag 2520 ttcttccaca ctggttgtca tggcttccac tgcatgagga taaatgaaag taaccaccca 2580 gttgtacttg gtccgaataa ttccaatctc ccaaaaataa ttagtataat tgcagaagga 2640 aaaattaatg agactattaa ctatgaagat ccttgtgcca aacgcctagc taatgttgta 2700 cgtcaggtac agacttctga agaattatgg ttagaatgca tttcccatct tgatgatgag 2760 cagcaggaag ccttacagga attgctaaat tttgcttgaa gcataaatgt aactccaaat 2820 aagtgttgtg agtggattcc attatgattg agagagctgt tctctccctg ctaagcagtt 2880 tatattcctt cccagtgttt ctccatgatt agtcagtgtt ataccctctg tttaccttgc 2940 atgttttatc aaacacagac cttggtgata acctgtgctt ctgttgtctt aaaatgtttg 3000 tcacctttct tctatttgat gtgaagtatg tatattgttg ctatttgtct aaattcctga 3060 tgctgggcaa gcagtgtgct tggtgtcagg gtgtcctgcc gcctaacaca agatgttaag 3120 agtgcacaaa gatgggatag aagaacttcc aggacaaact ctttggaatt gtgagtgaag 3180 aatatagtgg caggcttatt tctcctttat gatactccta gttttcatag taatgggagg 3240 atgctggtat tggaaaagag ttttgagata ctgca 3275 // ID KA520129; SV 1; linear; mRNA; TSA; MAM; 443 BP. XX AC KA520129; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27159 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-443 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-443 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; 0ae3b77b123075749ad468799577782d. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..443 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 443 BP; 88 A; 119 C; 175 G; 61 T; 0 other; gtgcctcctt gagggaggac gcggacgacg acgaagagga ggaggagatg gtggtcgggg 60 gcggtggctg caaggagcag gagctgacct acgagctgca gcagggctac cgcatcctgg 120 gcgagttcct gcaggagaag caccgaggcc tcaccgcccc attcctccag cccttggggg 180 gcgttgccac cagggaagag gaggcggccg aggggccgcg cggcggaggc cggggcagtc 240 gcgccctccc gcagcagccc ggtcagggca tgtgtctgct gaagatggag gagaagttcg 300 ccagcggcca gtacgggggc atcaccgagt tcgtggcgga cttcagattg atgctggaga 360 cgtgctaccg ccagcatgga gtggaccact ggatctccaa acagggccag aagctggaga 420 tgatgctgga gcagaagttg gcg 443 // ID KA520130; SV 1; linear; mRNA; TSA; MAM; 307 BP. XX AC KA520130; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27160 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-307 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-307 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; 1ae5a362be266996527a117f1bdea1c2. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..307 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 307 BP; 109 A; 77 C; 47 G; 74 T; 0 other; aatccatatc taaaaaagca atcacaaaga agaggaaaac tgtcacaaag tcacctactg 60 taccagaatt tcagcactaa tcttgatgaa ctcagggaat taatcacaaa aatcgagaat 120 gaactcaaag atctggaaaa caatagaaaa aaatcgtgtc cccagcatca gtagattgcc 180 aattccctct cctcgcaaca ccccagccag tattaatgct ggtctgtcat acccatccca 240 gattactgca gcagaatgga gtttttcttt agttgcaagg taagtttccc tccccactca 300 tttcaca 307 // ID KA520131; SV 1; linear; mRNA; TSA; MAM; 1560 BP. XX AC KA520131; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27161 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-1560 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-1560 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; 375e93fbb03b47197dc858eb786e0dac. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..1560 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 1560 BP; 507 A; 359 C; 297 G; 397 T; 0 other; ctatgatgat tttagaagac agcctgatca tgataaattt gctagagaac tgtggactag 60 tgaagaaggt gaaggagatc ctggaagaga aacccctaaa gtagaaatca gtagcaagtc 120 tgtagacacc acagaacctc tagatatcct ggagaaggat cattttgatt tagaaattgt 180 cagaaataga ttttcctatg gccagaagta agttgttgaa aaaggaattg ccttctaaag 240 atgtactgaa gacactgcct aaaacactta aacgacagtc caagcaaatt agttacctgg 300 atgatagcac aaaagagctt tccccaagga agaaagcaaa gttaagcaca aatgagacag 360 tggttgagaa tgtagaaggt gatgtgcaga tggactgttt gaatgaatca aagcatacag 420 agccactgtg tccagagtcg tttgcctcat tggattcaac accagtgtct actctccaga 480 aagggaccaa acctattcag gccttgcttg caaagaatat tgggaacaaa gtgaccttaa 540 caaatcaact gcccccttcc acaggtagaa gtgcccctgc tgtggaaaag ccagttatat 600 ctcctccaga agcaagcccc ataaagccag cattgacctg ccacaccagt acaaaaggtc 660 ctttacagat ggtatacaaa atgccctgtg gtcagtggtt gcccatagat cttcataaca 720 gctctgtaaa gattcagatg caacctatgc tagatcctaa atcaggagaa aaaattatgc 780 aacaggttct cattctgcct aagaattttg tgattcagca caaggaaggg aaagcagttg 840 caaataccac cacttcagca aaaaggtaca gaacaacatg gttcatcttt cccacagaca 900 gcaaatgtaa actcttcttt accatcagtt cttgtcaacc caacaggaac tgtttctacc 960 caactaccta atacagcttt caacaagaca gttacccctt tgtcaaatgt gagtagtgct 1020 agaccacagt ctttgacatc tgtaacctcc ataagtaatt tgttagcacc accagttaag 1080 actagccaga gtgaggtagg aaaagtcaag aacacagttt cagccaccgt gttcccacag 1140 cccattgctt cacccaccat ttcctcaaca gttcagcctc agttatcagc aacaacacta 1200 aatggatcta caaattccgg tagttccctc aactgttttg cacaacaaac tgctgattct 1260 tctgaagcaa agcaagaact gaaaactgtg tgtataagag attcacagtc aattcttgtt 1320 aggacacgag gtggaaacac gggagttgta aaagtacaga ccaatccaga tcagaattca 1380 cccaacagtt tatcttcaag ttcagttttc actattgctc ctcagcttca ggcatttctg 1440 gtaccaaaat caacagcttc atcatcatct gctttttcgt cagtagctgg aacaactgct 1500 acatctagtc tcccatcttt tggccaagca cttacttctg tttccattcc agctggcttt 1560 // ID KA520132; SV 1; linear; mRNA; TSA; MAM; 1139 BP. XX AC KA520132; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27162 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-1139 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-1139 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; 8c9db9ad705bb7183a28f65d7a5c27c2. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..1139 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 1139 BP; 360 A; 260 C; 203 G; 316 T; 0 other; taattaacgt atcaacagga aattttggac aaaccagttc aaatgttatt cgtacaccag 60 ctaaacatca gcaagtagat tatgtcacaa aaagttaccc tgttacaaga tcagaagcaa 120 cagcaaatgg agatactatc agtgggactc cagtgcagaa acttatgctg gtgtcagctc 180 catctgttct ttcttctggc agtggaactt cgattaatgt ggcacctgca ccaacatctc 240 caggtgtttc tgcccagaaa ttagttttta taaatgctgc aattcccagt ggcacttcaa 300 ccccaactat tgtagcagaa ccattaaaac aagctcttcc ttctccattg agtaaaacat 360 atgttaagtc tccagaacag ccccagatag tactaattcc atctacagtg ggaacaccaa 420 taaaaataaa ttcatcgcca actgtgtctc agataaaaga tgtgaaaatt gggctaaaca 480 taggccaagc aattgttaat acttcaggca gtgtgccagc tctaccgtca attaacatac 540 tgcaaaatgt aacctcaaaa ggagaagaaa aaagtagcaa gggctatgtt ttaccattgt 600 caacaagtgg cagttcaatt ccagtaagct caaattttat gagtcaaaat attactcctg 660 ttaatgaatc agtggtttct gcttcaagaa caataaacat gttttcagga acaggagcaa 720 atgtatcttt gggttctgtg tcagtgacct caacctctgc ctcagttggg acacgacctc 780 ctgttttagt cagtggaaat gatacctctt caagaattat gcctagtttg tcaaacagac 840 tttgcacgtc aaatctcgga aacactgtgg ctatatcaac tgtgaaaaca ggacatcttg 900 catcatctgt tctgatttca gctacacaac caacagtgtc tccgaaatgt ctaacatcag 960 ctttgcaaat ccctgttact gttgccttgc ctacacctgt gactgtatcc cctaaaataa 1020 tcaacacagt tgcacaagca gcaacagttc caggaactac acgttctgta tctctttcta 1080 aaagacaatc tcggacttcg gtccagtttc agtcactggg ggtttcaact acagtgcca 1139 // ID KA520133; SV 1; linear; mRNA; TSA; MAM; 632 BP. XX AC KA520133; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27163 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-632 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-632 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; 1b47622c36fcc5c63d57a44deab0f6fa. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..632 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 632 BP; 183 A; 167 C; 102 G; 180 T; 0 other; cccctgcttt cttaaaatcg acccctagtt acagtcctac tccaggtgtc actgccattc 60 acactgctac agcaccatca aatgtaacta gtgtaatagg gagtcagttc agtgaacctt 120 gtattcagca aaaaatagtc atcaacacca gtacaccttt ggcacctggt actcagatca 180 tgattaatgg agcccggttt atagttccac cacaaggtct tggagcaggc agccatgttc 240 ttcttatatc tactaatcca aaatatggac ctcccttagt tcttaatagt ggccaaggtg 300 ctcagcctac gccagtagat aacctggccc agaagatcac actagcatca aataattctt 360 taagtgggca acctgtaaaa cattgtctaa aaagctctac aaaaattgta aactctcttg 420 ggaatgcaag ttctctatcc acaatacctg cagcaccaca aatcataaac ccaactgcta 480 aagtttctgt tccacctcct gtaccaacgg tgtcactgac ttcagtaatt aagtctcctc 540 cagcaactct tttggctaag acatctttgg tttctgccat ttgttctagt aatcctccac 600 tgccaagtaa cacttcagta tttcatttgg ac 632 // ID KA520134; SV 1; linear; mRNA; TSA; MAM; 1206 BP. XX AC KA520134; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27164 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-1206 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-1206 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; c8cd56fb3fcdf935e531e1e858295238. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..1206 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 1206 BP; 357 A; 231 C; 250 G; 368 T; 0 other; agccatagtg aaacaaacaa aacagtggca ctcgaatctg cctgaacaga gagaacatag 60 tagtatgtgt ctttgaaatt acttcttaaa gctgcttgtc caatatatac agtgtgcatt 120 ctgaatcatg ctccttctat ttccttaaaa accgagccta cacagacagc agggttacag 180 ccagagctga acggtaggta ccaaaatgtc atatgcatgg acactggaac cagtgcttct 240 cctggacttc gtaagagcca cagagttgac ccttgaacaa cacagggatt aggagtgctg 300 acctctgcac cgttgaaaat gtgcattgtc acatccctgt atacaaggtt ttgcatctat 360 ctgtggattc aactgtttaa tgaaaaatcc ctgtataatt ggacctgtaa cagttcaaac 420 catgttgtca agggtcagct gtatcactag tcttagatga ttcaagtgac acacaaagtt 480 tgcactgttg atagctttta tagactcaca attgtggaga aaaacagtat ctaaatgaat 540 ttcaaaagtt tctgtggtta atctgaaata gattactgga aattatttat agggaaaaga 600 aaagcaaact tccaaatgtg gaggaagggc attacctgag ttccctgtga ttcccatctg 660 cctaccccct ccttgggaag catgttgtta actccttttt gataataatc atggctttct 720 ttttgccttt ttttcctgtg tggacaattt gctcttgttt tggttttctt gggcattata 780 aagctctaat gatgtagaag gtcagtaaca agatgcacat tagactcagg gcatgcttaa 840 tattctgggg gactgcttta atgccaaaaa tggttaaata atggcacaca atactcatgg 900 ctcttaatat gcacaccgtc agatcagcag tctgaagaac ttgttagttt ttgcacagta 960 ctgcacattt gggcaaagtg tgaaggattg tgattttgaa gaaattctta aaaatttacc 1020 taagaatgac agttgcatgc agtatttgtt tcatacttta gcagatgtac ataggcctga 1080 tcggatttct aaaccgtcac caccacttaa gaagccagcc tgcggactca ggaagctgta 1140 ggaagaatga atatgtctgt ctgtttcttt tcactggttt gctagggatg aattgttgcc 1200 taacag 1206 // ID KA520135; SV 1; linear; mRNA; TSA; MAM; 3110 BP. XX AC KA520135; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27165 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-3110 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-3110 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; f6c7687a84cd6eab4fe61f7a498e04d3. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..3110 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 3110 BP; 780 A; 784 C; 874 G; 672 T; 0 other; tcgagaggag taacaagttt gcgcgcctgt ccggaatcgg cgcggcaccc attcattgcc 60 tctgaacatc catctgtccc ttcggtcatc cttcgggaag gggctccagc cacctgggag 120 cagccgccac ccaggggact acgaccagaa aaagagcaga aagcccggcc gagcctcgcg 180 ggcccaggca ggggacggtg acgaccacta tgcagacgtg cgccagggcc tgggggctgc 240 gtctgggttg cggagtcggg ggcggccgcc gcctggctgg aggagctggc ccccggtggg 300 cgccgagggg tcgtgacaga agtagcggcg gcggggatag cggcggggcc ggggcctcgc 360 gcctcctcga gcgcctcctc cccagacacg acgacttcgc tcggagacat atcggccccg 420 gggacaaaga ccagaaggag atgctacagg ccctggggct ggcgggatga actgatcgag 480 aagaccatcc ctgccagcat ccgcctgaag agacccttga aaatggatga ccctgtctgt 540 gaaatgaaat ccttgcaact ctgcatgcca tttccaacaa gaatcagatc tggagatcat 600 atattggcat gggctattat aactgctcag taccacagac aattttgcgg aatttactgg 660 agaactcagg atggatccag tatactccgt accagccaga ggtgtctcag gggagactgg 720 agagtttact caactaccag accatggtgt gtgatatcac aggcttggac atggctaatg 780 catccctact ggatgaggcc accgcggctg cagaggcgat gcagctctgc cacagcaaga 840 gaaggaagtt ttttgttgac ccccgttgcc acccacaaac aattgctgtc gtccaaactc 900 gagccaagta ttctggagtc ctcactgagc tgaagttacc ccatgaaatg gacttcagcg 960 gcaaagatgt cagcggagtg ctgttccagt acccagacac tgaggggaag gtggaggact 1020 tcacggagct cgtggagaga gcccacgagg ctgggaggcc tgctgtgcta ctgacctttt 1080 agctctgtgc atcctgaggc ctcctggaga atttggggta gacattgccc tgggcagctc 1140 acagagattt ggggtgccac tgggctatgg tggaccacat gcagcctttt ttgctgtcag 1200 agaaaacttg gtgaggatga tgcctggaag aatggtgggg gtaacaagca gtggaaaaga 1260 agtgtatcgt ctggctcttc aaacaaggga gcaacacatc cggagagaca aggctaccag 1320 caacatctgt acagctcagg ctcttggcga atatggctgt gatgtttgca atctaccatg 1380 ggtcccatgg gctggaacat attgctcgga gggtacataa tgccactttg attttgtctg 1440 aagagcgagc agggcaccaa ctccagcatg acttgttctt tgacactttg aagattcagt 1500 gtggctgctc agtgaaggag gtcttgggca gggccgctca gcgacaaata aatattcggc 1560 tctttgagga tggcacccat ctctcttgat gaaacagtca atgaaaaaga tctggatgac 1620 ttgttgtgga tctttggctg tgagtcgtct gcagagttgc tgaaagcatg ggtgaggagc 1680 ggagaggtat tctagggact gccttcaaga ggactagccc attcctcaca catcaagtgt 1740 tcaacagcta tctcagaaac aaatattgtc cgatacatga agagattgga aaacaaagac 1800 atttcccttg tgcatagcat gattccactg gggtgtacca tgaagctcaa cagttcatct 1860 gaactcacga catggaaaga atttgcaaac atccacccct ttgtgcctct ggaccaagct 1920 caagggtacc agcagctttt ccgagaactc gagaaggatt tgtgtgaact cactggctac 1980 gatcgaatct ctttccagcc caacagccca gggggaatac gctgggctgg cctctatccg 2040 agcctactta gatgcaaaag gagagacaca cagaacggtt tgtgcctcat tccaaaatct 2100 gcacatggga ccaatcctgc aagtgcccac atggcaggca tgaagattca gcctgtggag 2160 gtggataaat atggaaacat cgatgtagct cacctcaagg ctatggggat aaacacaagg 2220 agaacttggc agcaatcatg attacatacc catccaccaa tggagtgttt gaagaaaaca 2280 tcggagatgt gtgtgacctg atccacctac acggaggcca ggtctacctg gatggggcca 2340 acatgaacgc tcaggtgggg aaggaatctg tcgtccggga gactttgggt ctgatgtctc 2400 acaccttaat cttcacaaga ccttctgcat tccccatgga ggtggtggcc ctggcatggg 2460 gcccatcgga gtggaagcat cttgttcctt ttctgcctaa tcatcccatc atttcgctaa 2520 aaccaagtga agatgcccag gctttgggga ccgtcagcgc agccccgtgg ggctccagtt 2580 gcatcttgcc catttcatgg gcttatatta agatgaatgg gaggcaaggg ccttaaacag 2640 gccacagaga ttgctatttt gaatgcaaac tacatggcca agcgattaga aaagcactac 2700 agagtccttt tccgtggtgc gagaggatgt ggctcatgaa tttattttgg atacaagacc 2760 cttcaaaaag tctgcaaata ttgaggccgt ggatgtggcc aagaggcttc aagattatgg 2820 agatttcatg cccccaccat gtcctggccg gtggcaggca ctctcatgat tgagcccacc 2880 gagtcggaag acaaggcgga gctggacaga ttctgcgacg ccatgatcag catccgacag 2940 gaaattgccg acattgagga gggccgcatc gaccccaggg tcaacccact gaagatagtc 3000 tccacactcc ttgacctgcg tcacatcctc ccactgggat cggccgtatt ccagagaggt 3060 ggcagcattc ccgcttgtac tttgtgaaac cagagaacaa attctggcca 3110 // ID KA520136; SV 1; linear; mRNA; TSA; MAM; 348 BP. XX AC KA520136; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27166 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-348 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-348 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; f603a67f4a3a5c1e7ebe3117653d3586. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..348 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 348 BP; 117 A; 77 C; 83 G; 71 T; 0 other; ctaatagcat aattgataag aactcctcag gcctctgcct acactcacct agtaagaacc 60 aagctagaca aaaagcaggc acgctgacac aggtaaatag cttccatcaa ttgaggaccg 120 ggattaagag gctagaagag gagcatctga caggtgcctg ttctaccggg gcaggcatct 180 attcagaggc ccaactaggg agtccagtgc tcttgatcca gggggcatac aggtagctca 240 agtacttgat gagctacagc aagcacctta gcatttattt ttaaaaagca gtcaggaaca 300 cacgctgaac cagaaaacat aggaagcttt aagtagtgaa aaagtaag 348 // ID KA520137; SV 1; linear; mRNA; TSA; MAM; 4446 BP. XX AC KA520137; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27167 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-4446 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-4446 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; 7fda4110634c1719003fb55a0dedaf21. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..4446 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 4446 BP; 1152 A; 1101 C; 1052 G; 1141 T; 0 other; cagagtctct aagctgtgtt ctctccctgg ttaaattttc caactaggtc acagtgtcct 60 cagttgcatg ctgatgctaa ttaatactgc ccgtggtgat ggtactcact gttgttagga 120 cacagaacag tcgtaagtcc catcttgaaa aggttcctcc tcctctgctc gcgttgtgtc 180 ctcttctttc cggctgacca aactgctacc tccgacttcg ccctggggga tgcttccatg 240 gcccaaggag ctcctgttct cctctgcccg ggggctagtc tgttcaggag tcttacccac 300 agtcatcggc tggaaggctt caggctggac ctgctcttct gttatctcac taagcttctg 360 caggtgtggc ttaatgatgt ttaaaaatgg cttatatcca ggaatctgtg gaggcccatc 420 ggtccacagc atgcagccct gtctttatgt tgtgtaacat ctctccatct acctctgaag 480 actgtataat aaccaaaatc tggttgatta ttgaggattc tctaagaatc aggcctataa 540 caatgcacca gtccagacat cctgcctcca tgaagatgtg cagcaaatac aagctggacc 600 tgggatttgt gaggcccttt actcgccaac tccatggaga tatgctccag ctctgactgg 660 gttagactga gtgtggagaa attttcatcc accattgtcc agtctccatc caccatggag 720 ctactttcag tcaagtccgt ggctgaacca atactgcatt catcacttat tagataaagg 780 tgacaggaag gcatcttgca tctgtggccc gtgagatgag gctgtgtcta tttcttgatg 840 agcaggacca atgttgccga accagctctg acttcgttgg acattagaga cgccagcatc 900 tatttcgagg tttaaaaatg ggtcagttga ctgtgacttt aacagctgct ctcccagttc 960 ggtattttcc atttttgaaa ggagaactga cagaagaagt gggaagtggc caaaggaaat 1020 ctttgtggag cctcttcagg gccaacacga agttgtctac tcgggcagca cgggcacgct 1080 ccttgcacag ccagctaatg agttcaaagc ccaactgggc tgcaaagcag ccgagatcct 1140 ttagccgaac ttcttccaag agacgccgag catgtctcca gagcatcata tcaatataca 1200 tgttctcagc acagtcactg tctttgctcc atcttttttc cagaaggacc agatggcata 1260 cttagtgttt tctgtaagcc gaatttacta gcaggaacac tgtcagctga ctgggataaa 1320 ctgatgcttc gattcctgaa gaactcaaaa ccacttgagc tgggttcgag ctgtaggtgt 1380 ggatgggggc gtctcacatt ccccagagcc gatggctttc agaatcgaat catgtgtcga 1440 cacaggtccc acttgccttg ttccagggct gtgttgaaaa gaagggtggc atgttgccta 1500 cttactgctg ggacttccat gttgtaagat aataaggtaa gacgcagcag tatctaaatc 1560 ctgagccatc aaacattcct caaacaagtc cttggggttt ccaacagctg caaaaaggta 1620 gttccacagg gcatactcag tcttcctggc acagtgaaca actgtctgca ggaagagggg 1680 gaactcggtg ataaattttg ccaccgtggg aagcagaggg tcgggaatgg gctcccgtga 1740 ggtagcttct tcttccagca cttcatggag catgagctcc agcacgtggg gaaagtaagg 1800 cagcgcggca caggactggg ctaagagcag agcttgctcc ccgaggttcc tcaccagcag 1860 ctgacgcaaa atgtgatgga ggtagatctg ggaggttctc tccacgacac agaaagggaa 1920 gagcacctcc agctgttccc tagcactgtt ccgagaatac agagaatcat agagcagagt 1980 gtcgttgaca gcaccaagga ctaatgcatc ttcaaacaga acagccaggg ggtagatatt 2040 tatatggaaa ggcagcatga tccgctggga caagaaggaa tggggcttgc ggtgatccct 2100 ggggaaaaga gggagccaga ctttcatccc ggcacctcca cagctcagcc agagggcctc 2160 caacaggtga cgcttctgtt tatttgcgcg acacgtggtc cagacatttt caacagactg 2220 ggctagtaca acaggaggac agaatggcaa gtttcctttg gttagggttg ctgtccttct 2280 ctcggatctg agggccggac ctgtccctct gcatcatgat gagctgtcct gccagattta 2340 gcataatgct ttctgcatca cgagcgctgt ggcattttca aggtgattcc attctctgta 2400 ctcactgatg tcagagtgac agataccact aggaaagggt gaggaatgta gcgtgacatg 2460 gatacttcct gaagaacctg aataccagca gtatttggaa tcagattttc tttcaatact 2520 ataaaggcat attgaacagt ctgctctaaa aactattacc atgtcccgga agacactaag 2580 cagtaatgtt tctgcttgtg ttttggtgac atgagcaaaa gcattgtcca gatttgaggt 2640 tcgcaaatac actctgagct tcttgacgat cacttatgtt ataacatgaa aggaaaataa 2700 aatcattcca ccaggctaag ccacctgtca caatcatatt ctgctcctgg ggtaatgttt 2760 ccaaaaagct tccatttgta aagagtaatg tgcaaaacca aacttgccaa caacagcaat 2820 attctggcca agcttatcaa tagctgaaaa ccggtatagg ccaattgctc tctagatagg 2880 tgctggaaat ctggtactac atgccaatgc cgatgaccaa gtaaagtgct taaactctga 2940 gactctaaac cgccacctgc aaatgggctc ttttcctgac gggttctgtg atcagagtga 3000 gctgaagaac tcctgggatt ctggctctgt gaggcctctc cacagttcaa gtacaatcga 3060 tcctccccct gaagcaacac ttgctcttgg ttacttacaa gggtttacag tgagtgcact 3120 cttgataaac tgaaacaggc tgtttaacta tactcttgga gtcagactca ttttcagtat 3180 tttgagaacc aaatccactg attacccaga ggtgatagcc ttcagcaccc cagcttagag 3240 ttgattttaa ggggatcttt tttggtacca tctgacctat aaaaaatctc ctccaagtgt 3300 acaaatcagc tgggctccaa acacactcca taaagaaagg cctccatact cccaggtcac 3360 tattacaaca ctattgtcag gagaccacct gaccaactta acagctcctg ttttgttcca 3420 aatgtggata ctgttttgct gttaattcta gtttatgaga cagctgcatg gctccagtgg 3480 tgttatctat cgtataaacc tgtacagaac cactcgcaca accaaatgcc atcagtcgat 3540 acttgttatt tactgctaca caagttccat caatgacatc ttgtggccaa actccatgaa 3600 gctgctgcag taaatctact tgacactggt gtaataaatc caactttacc atcattaaac 3660 acaacagcaa atccatcaag tgtggcacag tattccatgt ctctaatgtg cacatctgca 3720 aaacccagga atgaacctgg ctagatgact gcaggtctac tgaaaagggt actgtacaaa 3780 gattaatagc tttcctccca tttgtcattc cttcccagtg aataagatga agaagtcatc 3840 agaagtagca accaggagat cttccagcac agactgcaaa catgataggt gcttgcaaat 3900 ccagtatttt cctcatctct aaatttaatg ctggagcaca ctgttcttcc ttaaaatggg 3960 gtgtcccttt catttgcggg cttcctggga tacactggtt ctgtagatgt tatgtgaaaa 4020 aacaagatgc agccattcgc cgtacacagc tatcatggta ctatctggcc tccattcagc 4080 ttgcttgtag gacccaaact gagaagatga ttttgcaggt tccttgtagg ttacaattaa 4140 tacactgggg actgtaccag atgctgaggc gagctggggc cagtacggcg aagaaagtcc 4200 tctgggggtc ggactgaacg tggaaaggcg cctcggccgg gctccccaaa gggcagagca 4260 gcctcttggg ccagccgctc aggaaataca tggtccgcgc ggagcctcag acgccgcggc 4320 gccaggcggc ccccggcccc gtccgtcaca ctcagcggcc cagggtcgga cgcccgtctc 4380 ccacaccgcc accggccgag tcggcggcgg cgccggtggg agggccgggc atctgccctc 4440 tggccg 4446 // ID KA520138; SV 1; linear; mRNA; TSA; MAM; 409 BP. XX AC KA520138; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27168 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-409 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-409 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; 0f107e3bbc5e74b47d1da83b28f81e3e. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..409 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 409 BP; 92 A; 106 C; 101 G; 110 T; 0 other; ccaagacact tctgccaggg gatagccttc agcttggcag gggagctcta cctcatctgt 60 ccctgggacc ttgaggtagc gagtgtttat tttcttgtag gaagttgact ttcagcgtca 120 ggtacttgta gtcccaggca atcccataga tgatcaggca gcggtactgc cctgcatcct 180 tcagctggat tcgggggatg aggaacaagg ccttccccag gggcagctgc tcctccagca 240 aagtagctct ttcactgggc aagactgtat cattttccac tttttgcaaa ctggctttta 300 aaattccgag ttccacatga cctccagtgt caaaactacc atgtacattt cctttgggac 360 ggtcactgtg aacaaagact gtctgttgaa gctgcagtcc cagggtcaa 409 // ID KA520139; SV 1; linear; mRNA; TSA; MAM; 2530 BP. XX AC KA520139; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27169 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-2530 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-2530 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; c39684a430f1f358778977a98ca78f93. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..2530 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 2530 BP; 607 A; 612 C; 616 G; 695 T; 0 other; cgcatcggag gggagcgccg ggacggcccg gcggccgcgc agcaaccgga gagggaggcc 60 ctggcgcagg agcccctggc ggacgcgtgc ggcgggggcg caaggacgcg gaagccgagc 120 ggggagggga gcgctggcgg cgggagccgg ggcacgggga ccggactgtc tgaggcgcgc 180 gccgcgctgg ggctagcgct ctacctgctc gcgctgcggg cgcttgtgca gctctcgctg 240 cggcaactcg tgctccgagg ggcagctgtt ggccaccagg gagagttcga cgcgcaccaa 300 gccagggaat gctcttgaac atataacatc cattggcccc aggactacag gaagtccaga 360 aaatgaaatt ctgacagtac attacctttt ggaacagatt aaactgattg aagctcaaag 420 caacagcctt cacaagattt cagtagatgt acaacggccc acaggctcct ttagcattga 480 cttcttggga gggtttacaa gctactatga caacattacc aatgttgtgg taaagctgga 540 acccagagtt ggagcccagc atgctgtcct ggctaactgt cattttgact cagtggcgaa 600 ctcaccaggt gcgcgatgac gcagttagct gttcagtgat gctggaagtc cttcgtgtct 660 tgtcgacatc ttcagaagcc ttacatcatg cagtcatatt tctctttaat ggtgctgagg 720 agaacatctt acaagcatgg ttttattacc cagcacccct gggccagctt ggtccgtgca 780 tttattaact tggaggcagc aggtgtagga gggaaagaac ttgtattcca aacagaaaat 840 ccttggttgg tccaagctta tgtctcagca gctaaacacc catttgcttc ggtggtggct 900 caggaggttt tccagagtgg aatcattcct tcagatactg acttccggat ctacagggat 960 tttgggaaca ttccaggaat cgacttagct tttattgaga atggatacat ttatcacacc 1020 aagtatgaca cagcggacag aattctaaca gattccattc agagagcaga cattttagca 1080 gttcttaaat atctagctac atctgatatg ttggcttctt cttctaagta tcaacatgga 1140 aacatggtct tctttgatgt gtttggcctg tttgtcatcg cctacccatc tcgtgttggc 1200 tcaataatta actatatggt ggttatggct gttgttttat acctgggaag gaaattactg 1260 catcccaaat ataagaccta cacaaaggac ttcttctgtg gacttggcat cactctgata 1320 agctggttta ccagcttggt tacagttctc attatagcag tgttcatctc ccttattgga 1380 cagtccctct catggtataa ccacttctat gtctccgttt gtctgtatgg aactgcagct 1440 gtagccaaaa taatattcat acataccctt gcaaaaagat tttattatgt gccagtggcc 1500 agtatctggg agaagtattt tttgatgtct cgttgtttgt acactgtggg ttccttacag 1560 ctctcactta ccgagggctc tgctctgcat ttattagtgc tgtctgggtg gcattcccgt 1620 tgctcacaaa gctttgcgtg caaaaggact tgaagcagca tggtgctgga ggaaaattta 1680 ttgcctttta ccttttgggg atgtttattc catacctgta tgcactgtac ctcatctggg 1740 cagtatttga gatgtttacc cctatccttg gcaggagtgg ttcggaaatt ccacctgatg 1800 ttgtgctggc ctctattttg gctggttgta ccatgattct ctcatcctat tttacttcat 1860 ctaccttgcc aaaagcacaa aaagaacaat gctaagttta actttggtat gtacagttac 1920 attcctcctt gtttgcagtg gaactttttt cccgtacagc tccaaccctg ccagtccaaa 1980 gccaaagaga gtgtttcttc agccaacaag aacatttcat gatctggatg gaaacgtagt 2040 taaacgggac tctggagtat ggatcaatgg atttgattat accggcatgt ctcacataac 2100 acctcacatt cccgagatca acgacaccat ccgagctgac tgtgaggaga atgccccgct 2160 ctgtggtttc ccttggtatc tccctgtgca cttcctcatc aggttggaac tggtatcttc 2220 ctgccccaga agtttctcca agagaacctg ctcatttcag acttgtatcc aaagaacaga 2280 caccctggga ttccataaag ctgacctttg aagcaacaga gccatatgtc attctatgtt 2340 cgaacccaca aacgggctac gctttctcag tggtctctcg gcaacggcac cccagtcaca 2400 agtaaaggag gggactactt cgtcttttat tcccatggac tccaggcttc cacatggcac 2460 ttctggatag aagtacaggt ctggaagaac agcctgaagg aatggtcact gtggccattg 2520 ctgcccacta 2530 // ID KA520140; SV 1; linear; mRNA; TSA; MAM; 753 BP. XX AC KA520140; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27170 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-753 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-753 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; 0e7039e8856d85c06dc161a2b3e89403. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..753 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 753 BP; 221 A; 168 C; 177 G; 187 T; 0 other; cgctgtttgg ccgccgtggc cagcctgtcc ggaggttctg cggggcaagg cccggtcctt 60 gtcgccgtct cggggagctt caggcctgga ggccttcgct gtgatcagtg tctcccgcac 120 ctccactgtc catggtctcc tttgggaact acagggaagc tattcttcct gcttagcttc 180 tacctgtaac ctgtgggaat atcccctgat atatccaaac tacagtccag actgaagaag 240 gcaaggccaa gaaagagaag atggggttta tattttcaaa gtctatgaat gagaacatga 300 aaagccaaca ggagttcatg cttatgaatt cccgacttca gagctggaaa ggcagctaat 360 aatgcagaat gagatgagag aaagacaaat ggctatgcag attgcttggt ctcgggaatt 420 cctcagatat tttggaactt tttttggcat tacagccatc tctttaacag ctggaattaa 480 agggaagaaa cccgtcctca tctttcctat ggttccacta ggctttgtcc ttgcctacca 540 gtatgacatg ggctatggaa cccttataca cagaatgaaa gaagccgaga acatactgga 600 aacagaaaag agtaagctgc agctgccaaa aggaatgatc acttttgaaa gccttgaaaa 660 aacaagaagg gaacagagta aatttttcat agacaaatga aatcacgttt acccaccaga 720 tctcaaaaca cagaattgtt gacttgaatc atg 753 // ID KA520141; SV 1; linear; mRNA; TSA; MAM; 541 BP. XX AC KA520141; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27171 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-541 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-541 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; d3242e657ec4175cb3fd1305c8a10c49. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..541 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 541 BP; 130 A; 123 C; 91 G; 197 T; 0 other; cagtcatgtt gtcccttatt tgatcaactc gaactgctag gtctctgaaa gaggggcgct 60 ggtttacatt attgttccag cattctgtca taatcacata tatatctggg catccatctg 120 gtcttggtaa tcttccatta ttcttcagga gttctatcaa atggaacaca atcatctgtc 180 cttgtttgtc attgccaatc atacgcataa attccgctgg tgcactccaa agctccaaac 240 atctgaagcc acagaaaact tgctctctgt cagtgattct ggtgcataca atatgggact 300 ttcaccaggc tctttcactt tgtagtactc tttgtcttgt ggcaagactt tggttaatcc 360 aaaatctcct attttaactc tgttttcatt ctccactaat atattccttg ttgccagatc 420 cctgtggata tatctttttg taccaagata ttccatcccg catatctgag atgtgtactg 480 cagaagtttt ttatgatcta tccgttcttt atgtttttgg agatagtctc gtaaacttcc 540 a 541 // ID KA520142; SV 1; linear; mRNA; TSA; MAM; 319 BP. XX AC KA520142; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27172 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-319 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-319 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; 4229ca8898e78374982372b2e03fabef. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..319 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 319 BP; 78 A; 74 C; 58 G; 109 T; 0 other; cactgtagca gactcctttg tactttacaa tgttgtcatg ctgcaaggat ttaaggattt 60 caatttctct ttcgaagtct ctgaggtgct cttcagtact gtgctggagc tttttcacag 120 ccaccacctc cccagtattg tcttgtagag ggtcataccg gcacatctcc acactcccaa 180 aattaccgcc aagttgctgt agaaatttca agtgtctttc ttcaaattgt gtagggtctc 240 ggtcttaatc ctagggcacc tattctcata tttggtaaca tgtcattttc tgttaatagt 300 tcataatgag taaacaaac 319 // ID KA520143; SV 1; linear; mRNA; TSA; MAM; 592 BP. XX AC KA520143; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27173 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-592 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-592 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; 151c7ec42ec95e44ddaac6aaf04acb29. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..592 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 592 BP; 80 A; 232 C; 179 G; 101 T; 0 other; tgcctccggc tggccacagt ctgcgaagcc cctggagcag gcaaaggtcc gagtgtccgc 60 caggctgaga cctcgggggc cctcccgtgc gggttcggct ctcactcaca tccctcggcg 120 gcgaagatct ggcctttccc tgcgctgcaa cagaagccct ccgccccgac gctctgccac 180 caagtccgga cccaggggcc gagggcccga ggcggcggcg cgcactgtgg agcgagcagg 240 acgcgggccc agcctgtcag cgctcaggaa ggccgttagc gtcggccgct gcggcccgct 300 cctgcttctc ttcctctctc cttcctgcaa cccacaccac tcccactttg gggaaccggg 360 aagcccgtca cagtcgtcgt ctccaccctc tccggagtca caccgtcttc tcagcgccgc 420 aggcgacact ggctgggacg tcctatttac gtccgactca gcctcccagt tggcctcggg 480 tctggcgtct tgttcactgc agagaccgcc ttggtgcggg gccggcgcct ggcgcgcacc 540 cccagactgc gcgtgcgccg ctccacccag gctgcgcttt caccgacgcg cg 592 // ID KA520144; SV 1; linear; mRNA; TSA; MAM; 762 BP. XX AC KA520144; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27174 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-762 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-762 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; 779bbf1f925b0efc544b046c6cb5efed. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..762 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 762 BP; 241 A; 174 C; 184 G; 163 T; 0 other; ttacgctggg aaagattgaa ggcaggagga gaaggagata acagaggatg agatggttgg 60 atggcatcac tgactcgatg gacatgaatt tgagcaagca tcaggaagga gcatgacagg 120 gaagcctggc atgctgcagt ccatgggttg caaagagtca gacacgactg agcgactgaa 180 ctgatgtgtg gtaggcaaaa ttttcagatg tctaagagtc ctggccccgg ctattcaaac 240 actaacctag gtactgctgt gaccagatga ccttaagata cgttatcaca acaagtcaga 300 ttcaaagcat aagaaggatt caatgcatca tagctggctt gaagatggag ggagccaagt 360 tacaaggaat gcaggcagcc tctacttata agctgagagt tgcctgcagc tgacagccag 420 ccagaaacag gaattccagt ccaacaattc tgccaacaat ccaaatatgg ttggaaatgt 480 atttctgccc ggagcccagc accttgacat tagccttgtg aagccataac cagagaatcc 540 aagcacagac caggacctct gacctacaga attgtggatg ataaatggta ctactttaag 600 ctccaaagtt tgtggtaact ggttatgcag caacagaaat ctaatacagc atgtagagct 660 ctcagtaagt tgacaaccat agttcacaat ggcctgacct gtcggtgtta gctccccact 720 ccacatcctc ccacaccccc agacacaaga gaacaaactt cc 762 // ID KA520145; SV 1; linear; mRNA; TSA; MAM; 685 BP. XX AC KA520145; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27175 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-685 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-685 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; 15012d1f5365e4247e1d586262fe2ba7. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..685 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 685 BP; 162 A; 187 C; 189 G; 147 T; 0 other; gatctttcct ggatctatga gttgaatagg cttcaggaca ttcctcacag gacatgaaaa 60 aaacacttca cctcctcctc caggcggcat cccccgtcgt acaaccttta aaagattcac 120 catcaatccc aaactgtttc agtagaggga gtgctgttgc cttcagaaga tcaacccctg 180 gtcattggtc actcctcgca gaactattct cagcgggtgc ttcataaatg gagccaggca 240 gagcagactt tccagataat acccaatgct gcgaagaacg ctgcagtcat gctccatgga 300 cccaccatac aagaggccag gctgataata taaggtcgtt catttcaatt cgagaaccat 360 tagttacttt gtccaacagt cttatgaagc tggcttcaaa atgggttgtc atctctggcc 420 cgaatctttc ggattttgac tgggcgcccg ctcagagtgg acaggaccag acgctggcgc 480 aagaagttgc agcctgagta gctgagggag tgcgcctggc tcgccatgtg cacgccctcc 540 gcaaagctgc gggcagcagg gacgaggcga cttcggatgg gcgagggggt cgcggtactg 600 gcagtagcgg cgacagcggc aggggcggcc tgggttccct cccgcagccc ccggcgcgtc 660 cacgtggttt ggaacaggaa gagag 685 // ID KA520146; SV 1; linear; mRNA; TSA; MAM; 406 BP. XX AC KA520146; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27176 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-406 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-406 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; 0ca4d3d284b0572c4f06b2b76879cf9d. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..406 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 406 BP; 104 A; 88 C; 81 G; 133 T; 0 other; tttattgacc tcaaacagat tgccagatat ttctccagca aaatgggttt attcagaatc 60 agcagataat tgcaatttgg agtctcaacc atggtgagcc aggtgcaagt cctccccaca 120 gcatgggaat gacaatactt ttatagagga gaaaacgaag ttgggagggc tgtaataaac 180 aagtcctggc ttttcattgg ctgagtcctt gccagaagtc ttgccttctt ccttttgggc 240 tatgctatct tcacaaggca tgagagctcc ccctcgtggt ctcctgacta ttgaggtttc 300 tgggggtttt ttacacttta tactagcaac ctttcgataa ccatatatcc tatattttgt 360 tgttttaaaa cacaactttc actttactcc agattttcag tttgcg 406 // ID KA520147; SV 1; linear; mRNA; TSA; MAM; 923 BP. XX AC KA520147; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27177 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-923 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-923 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; 85032af96f3fc0e32f35b7b4c7fd21fa. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..923 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 923 BP; 224 A; 258 C; 242 G; 199 T; 0 other; ctcacttccg ggaacgcctg ggcgacaagg ccgccccctg ctcaccgcgc agccagccgg 60 ccggcccggg cggcgaagtg agtgagcgcg caggtaagag ccgagtccga agctccactg 120 tccgcgcggg cccagcctct ttctgcagct atgggggcgt ctgcgcggct actgcgcgca 180 gcgatcatgg gggcgccggg ctctggcaag ggcaccgtgt cctcgcgcat caccaaacac 240 ttcgagctga agcacctctc cagcggggac ctgctcagag ataatatgct tcggggcaca 300 gtttagccaa gactttcatt gaccaaggga agctcatccc agacgatgtc atgactcggt 360 tggtccttca tgagctgaaa aatctcaccc aatataactg gctgttggat ggccctcggt 420 ccttcctttc tttgttcatt tttaacttaa tttgtaatgg ctttccaagg acacttccgc 480 aggcagaagc cctggataga gcctatcaga tagacacagt gattaacctg aacgtgccct 540 ttgaggtcat caagcagcgc cttactgctc gctggatcca tccaggcagc ggccgtgtct 600 acaacatcga gttcaaccct cccaaaacca tgggaatctg actggggagc ctcttgttca 660 gcgtgaggat gatagaccag agacagttgt caagagactg aaagcttatg aggctcaaac 720 agagcctgtc ctggagtact accggggtgt tggaaacatt ctctggaaca gaaaccaaca 780 agatctggcc acacgtatat gctttcctac aaacaaaact tccacaaaga agccaggaaa 840 catcagttac tccatgagga aaagtgcatg taactaggaa gatgagcaga agctccttgt 900 cttgtgcatt tacaggttcc ttg 923 // ID KA520148; SV 1; linear; mRNA; TSA; MAM; 560 BP. XX AC KA520148; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27178 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-560 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-560 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; 0c2aecbc7e9e70ed466e1423b2413748. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..560 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 560 BP; 149 A; 128 C; 103 G; 180 T; 0 other; tcagaactgt gagtattact tggtctttgg taacacacag ggcccactct aactcacctt 60 ccctttattg ccctcatgtc tcattggctt ctgagttagt ctctgctttc taataattgt 120 cttagaacac ttttacatat ataggttggt ttcattttac cctttatttc ctgctgcagt 180 attgcagcca tactggcctt cttgacactg tcagatttgg gaatcaaaaa gagggataga 240 agaacatggc tatgaaaatc aagacctgtc cttcctgtga tcatttcctc tccactccca 300 aaactaaagt tttgcataca accatgacct tgggaaacac ctgtgctatt acaaaaagaa 360 cttgttttct gctgtaatac ctatcatgat ctgtgtgcca catggaaatg tgtccagagc 420 tgactgccat ggccagaagc tactgtgcct tagttaaaag ctagtaaggc ttcaaaccat 480 taccctgttt tctatagcac cacagttatt tcggtacacc tttcataagc agagtgtgtt 540 gtgggaaatg caaattggca 560 // ID KA520149; SV 1; linear; mRNA; TSA; MAM; 702 BP. XX AC KA520149; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27179 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-702 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-702 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; 2d52e42fdebdc56ebcbb178c7af39573. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..702 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 702 BP; 233 A; 104 C; 155 G; 210 T; 0 other; caccaaagtt gaatttccaa cagaatatgt aattaaactc tcatgctttc agaagttact 60 caggttgaaa aatgtgcact ttaggaccta cttgccagtt tcttttttga tcccaatgta 120 tgatgtgcct tgatgagtag caaattgaag gaaggaagga agacagggaa ggagggaaga 180 aggaaaggag actcatggca ttaggttaag taagaatact ttgtcattag gaaatagatc 240 acgtttgcct gggggaaact cccttgacat aaataaaaat cattattagt aaacaggtat 300 agaaattaga aactcattga tttggcttag aagagttctt tattcctaat caaagaagtt 360 cacacttgct catgttcact gctatccttc cttaatgggg aagaactctg ctagtgaatg 420 taatctgtgc agccatttta aaatgaaaat gatttgattc cttagaaggg caataggatg 480 catgcttatg tacagtggta ggaagagtgg ggcaatatga gaggtgaagg agaaatctga 540 caatatcttc aattctctta cttggtgcta gattaaatga aatgagtcat tgtataagct 600 gttattaact gcctttgaaa atctggccca ttttattcca ggcactgaaa atacaaatgc 660 tagcaagtga ttcttatgta tcttgtgggg aaaaaaagct gg 702 // ID KA520150; SV 1; linear; mRNA; TSA; MAM; 454 BP. XX AC KA520150; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27180 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-454 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-454 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; c5bd2c53fba3fa254b48199414d8c969. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..454 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 454 BP; 161 A; 89 C; 80 G; 124 T; 0 other; ctgaaaacca ggaagattgt gatgttacat atgtatgatt caataactcc aatctgtttc 60 tatgagtact aactgcctta tcacctcagg ttagtttaaa acaaggtgca aatgaagcca 120 ccatcacaga tctgatcacc acgtgggtgg cttctcaaat tgagacatgt agtccaaatc 180 ccatttagtc atcttctaca tgtttactac tagtcccaat gggactgagc caccaaagac 240 tacatctggt gcaaatcaaa gctcatgttc ctataagtca gaaggttaat cctcaaataa 300 ggaaccatca aatatcctgg catatttaaa gtgaattata taggtaagta ttaaagctca 360 gaagcattct atggtaactg agctaaagag aggaatgaca aatgtagtaa aagccatcat 420 taccagtaag gatcaccaaa ttcttagaaa taag 454 // ID KA520151; SV 1; linear; mRNA; TSA; MAM; 551 BP. XX AC KA520151; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27181 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-551 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-551 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; fc64ccabeb9d688e803bc8b8f4af4a32. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..551 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 551 BP; 96 A; 193 C; 134 G; 128 T; 0 other; atccttgcta atggcatcca tgttccacag acacattctc tctctttgta ctagagcctc 60 ttctttctgc cgccattctt cttcccgttg cctcagttct gatattgctg tttgtgcttt 120 ggcatgttcc tgatccaagg actcagagtt atgcagtgct aagctaccaa gtttctgctg 180 agcttcagcg agattccatt tacacgccac agagctcttc acaaactctt tctgcttctg 240 gcaagccatt tctattccat ggctatacat ccgcctcccg gcagctgcgg gcagcgggga 300 gaaccggggg acaagtccaa atcactctct tcctcagcct cgccctctgc ccgagggagg 360 ctccaaggtc ctggcggcgg ccacggctgc tccatgtccg gctgcccgcg gctctataac 420 ccccacagcc aacggacctg gcgcgagtag aacccgctgc gcggagccag ccccagccgg 480 cgggggccgt tacccagaat ccccctgcta gccccgacgc cgacgtacgc gccgcgttag 540 ccccggccgc g 551 // ID KA520152; SV 1; linear; mRNA; TSA; MAM; 359 BP. XX AC KA520152; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27182 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-359 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-359 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; 057ec221fbfef13260de588c4531968e. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..359 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 359 BP; 119 A; 70 C; 62 G; 108 T; 0 other; actctgtttt ccctcccatc aaaaaccgaa caaaaataaa gtgcagcacc cataaaagtg 60 tcaagaaaat agccaagttc ttcctttctt gtaacaaaat agtacttggc ttcagcagtc 120 ttaaccaaat tatacagtgt ccatcatttt cggttcatca tcttctttat gtaccactga 180 gtttaaactg cagagagctg tgttgataga atactgaaga taatctggat tctgtaggag 240 tctaataaac ctatagatcc aacaccagaa tggggaacat gattctgaac tgtcataggc 300 tgaaaatttg gtgattgaga ataaagtctg actcttgact tgaaagcttc aagttcatt 359 // ID KA520153; SV 1; linear; mRNA; TSA; MAM; 528 BP. XX AC KA520153; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27183 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-528 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-528 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; 29c5d1279d53409e022f5e11d3be086f. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..528 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 528 BP; 150 A; 105 C; 102 G; 171 T; 0 other; ggaattccac atgaaaagct ttaatataca gggtcatcct tgtggtatat atttgaaagc 60 ttatgctctt acattgcaaa gaagttattt ctccatttta ttacctcaat aaagaagcat 120 tattctttat tcagtagaga tggtaggcag cagggcccat ctccttccat gttggtccac 180 tgataaagta tgtggtgatc ctgcctccaa gactcagttc ctctgacctc ctcagtgact 240 ttgcttttct gtcctgtcct gtcatgctat ttgcggtcaa cagaattaag cccgaggcag 300 taagcccatc tttactttct atgagcactg ttgatatgcc cacttttaag tatttcttct 360 tcaggtaagt tcttggctta tcctctgaat gcagaaggat aatattaggg tagtgggaaa 420 tacctattta aagatcttcg aggaggtaga ggaaaagaag agaaatatat gtactgtaat 480 ctctcatttc cactactcaa tctgtgaaga tggaagacac aaaactaa 528 // ID KA520154; SV 1; linear; mRNA; TSA; MAM; 860 BP. XX AC KA520154; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27184 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-860 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-860 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; a162506b758187914ed9e871e6fcda5a. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..860 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 860 BP; 213 A; 232 C; 261 G; 154 T; 0 other; gctgggatca gtaatggtca gcactgtgct ctagcgtagc aacccattgc cattgccttc 60 tccaattaag atgataggtc acttgaaatc ccaaaaggaa acctgaaatg tccttagagg 120 ggcaagcatg atgaatgctg gtttatgtca gtatcatcac gggtggaaac cttcagatgt 180 cctggtgcca cagtgaaaga gatggtgtca cggttggttc cacagtacaa agaggactgg 240 agcagtgtgc ggtgaaagcc agcaatagtc cacgatgctg tactgcatgt agcccagaaa 300 aaagccaaaa gccacgtcgg tgacattgtg ccgccccagc atgaccctgg agagacccaa 360 gatgaaggcc cagagtacca ccagcaccct cagtgggatg gccagcacaa ggtggttcag 420 gatgaagcgc gacacaaggg cggccctggt ggtatggcct gaagggaagg agtacttgtc 480 caccgaaata gtgaaaaaca tgtccatctg gttgtgggct gggcggcgcc tgcggaccag 540 ccccttgatg agggacacca atagcaggtc caacagcagg gcgaagagca ggttcatcag 600 cacctcgcgc cctgcccagc tgtcgctcct ggacaggcag tagagagtgc cgagcagcca 660 ggggatgccg tgtcccgaga tctccagcaa tttcataagg ggcctcatgc tgccccagga 720 cgagctctcc cccgcgcaca cccccagctt cttggacagc cacaggtcga tggccagtag 780 ggagcgcagg gcgataccca ggaaggacgg gttcagatct atgcggtcct cctccggcag 840 ctggggcggg agcgcctgag 860 // ID KA520155; SV 1; linear; mRNA; TSA; MAM; 349 BP. XX AC KA520155; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27186 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-349 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-349 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; 0b0972b3e5db64cba1ad8704eb356960. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..349 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 349 BP; 113 A; 64 C; 73 G; 99 T; 0 other; aggccctggc agtcaagata gggaattaca aaaaaataat caggaataag gtgagcctaa 60 ctttgacctc ccattattca gacctgtgga tcctgcaaga ggaaatattt ttttccaaat 120 atctgggctg aagattgctg cagttaaagt atctctgtta aggctaaaaa taaaggaaac 180 cacctagagt gtcagagttt ggctgattca agaagtgaag aggtagtctg tgttcaggat 240 gttgtgagaa tgcaaataat ttctatattg aagagtagct attccttttt cagtgttcct 300 caaacactgg aaaattcaca cttccaccta gtcagaacct acctgtcac 349 // ID KA520156; SV 1; linear; mRNA; TSA; MAM; 1369 BP. XX AC KA520156; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27187 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-1369 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-1369 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; d946a0d70c24cc744f851cf626af06f3. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..1369 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 1369 BP; 408 A; 276 C; 272 G; 413 T; 0 other; tttattgaga cagaaatgga acattgttct cttttatgag ttaactgcac agtgtgttaa 60 gaggctggtt acaaactcac tccaaaataa ggatgacctg cagttcacga acagctctgt 120 caactctagt acctcaagtt ggagcagcct gccaaggggg ttgaaccatt cagcccaaga 180 taagttgctg attcagctga atttacattt acttcctata aataacacca atattagcag 240 tttaaaattc actccatttt acgtttacat gatcatttgg tatcattctc ttaaagattt 300 caggtgcagg tggtcaatac agagctttct ttggcacagt ttctggtttc atagctaggc 360 ttaacttggc tatgcagtac tgcagaaaca ggactatttt ggatcttggt gtaactacaa 420 gtttatgtta agcattattt acaagatgag agccaagcac agacttaata cactgtcctc 480 acaaatgaac agaagaatga caggcaacag attttaatga gcaggggctg agattactag 540 actactagtt agaaccatct tccctggaag aggagacaag tttcattcaa tgcaagaatt 600 ccctgaacca ctgataccaa tgtctcatgt cacgggattt actttgcaag aatccagggt 660 agggacagtg ctttactggc cagtggatcc atcaaaccta tattaaaata caacttagct 720 ggtagctttg ccactgttat ttgggtctga tgggtagaaa aaggcaaagt actgtcattt 780 tatgtgggta taattgacct tggaggaatt atagttggat aatataatta ttaaacacat 840 ccagctggat aaaaacccac ccagccttat atgagtgaca cctttgtgta tcagttcagt 900 tcagtccagt tcagtcgctc agtcatgtcc gactctttgc gaccccatga atatagtctt 960 atatagagct gatacggatt gcctcccagc agtagtatct tggaagctct aaattagtgg 1020 ctgtgctacc agaatgtgtc tctgctttgg ggctgataca cagacatgag acaaacaact 1080 agcatgattt ctcattctag tagtgcttat gagagaggag ttctgattaa gccccaaaac 1140 cgatctggat tgcaatcata gttattattc aagtacaagg agagtgcttt atttcacatt 1200 gagagttcag ttctgactat atatatatct agctctctac tgaacactgg gtcagtagtc 1260 accagcatcc ccatacagta cattgagaaa aagccccaga tctcacaccc atcttaaaac 1320 tcttattgca gaactgtgct ggtctgtttt ctttcaaagt aattccttt 1369 // ID KA520157; SV 1; linear; mRNA; TSA; MAM; 2006 BP. XX AC KA520157; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27188 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-2006 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-2006 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; b3507cccab8d88334dd605f4b7ff59de. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..2006 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 2006 BP; 474 A; 540 C; 498 G; 494 T; 0 other; ctattctatg tacttcccaa ttctgtctct catagacttt aaaaattcca gataatacag 60 ctttcctttt aatcagtttc ctctcatctt actcaccccc aaatcccaga acctggtgag 120 caaaagctgt gaatccaaat atagaaaata atctggaggt ctgtatcaaa tcagatgtac 180 agttggctgt tagtgttttc cttatttaat gtctgaattt gctaagagat gactgtcctg 240 gagaggtcct tcaccacccc cagtcttctg aagccagagg ccctagaact gtgaggtctg 300 ggtgaacgag atggtatcgg acttgtcgac ggcaaagcct ccgttgacgt aggacttctt 360 ggtgtctgag tcctcgttgt cgagtgttgt ggattccaag gtgaaggggg aaacatccat 420 ctgctccaac tccttcttgg agagcttctc cacaatgcca gtcccaaagg cgtctccaag 480 gacattcacc atggtcctga accggtccag gtcaacagcg atgatgaggg tgacatcctc 540 cgcgggcagg cccacagcac tcagcacgat caccatggtc accaggccgg cctggggcac 600 accggcagct ccgatgctgg cggcggtggc agtgacactg atatgatctg cccaacgctc 660 aagtccaaat cattcaactg tgcaataaac acggccgcca ctgcttcata gagtgcagtc 720 ccatccatgt tgatcgtagc accaacgggt aatacaaatc tagtgatcct cttgtccacc 780 cggttcttct cttcagtgca gcggaaagtg acaggcagtg ttgctgaact ggaatcatga 840 gagctgtcag aagagcctgg gccattccca tggcgaactg gaaagggttc tttcgtacaa 900 ttatgaaata tatcagtggg agaattacaa tggagtggat tgcaagccca acggtggcca 960 tgtaaaggcc cagtttgcgg aatatttccc agtcttcaac ttctatgatt ttcccggcaa 1020 tcaggaacaa aataccaatc ggcatgtagc ctgaacgatt ttcatggttg catcactcag 1080 agcattgaag aaatccacca gaatctgtcc cctttctccc atttttccaa tgacaattcc 1140 aaagacgagg caaaagacga tcaagcccag gacatttatg ccatctgaat acatgcctac 1200 gactttgtat tcctttgttt tgttcttggc agttgtcatg atggctgtca cagtcgcttc 1260 ggtgctgttt gtccctggct cctcagaaag ctccacttct tcacgtgtgg ttttgtactg 1320 ctgaggcttg gacaaggttc tcagggaaca tattctaaca tggcatccac tgtgctaact 1380 tcaggggtgt tccctgtcct gtcaatttca ttcactttct gggtgacacc aggcttgatg 1440 ctcaccacca gcacgatacc tagcaatgag agtggtacag aaataatata cgacagcacg 1500 cagaccaatt tttccagata cgttggaatc cagtgtagca acacctgctg gatacaatta 1560 atggtaaaat gacgagtttc agcattctca tccaggaaag gaaaagtaga atttctccag 1620 gttagatagc ttgctgtatt ctcgaaccaa gactcctgta acaatccctg cgaccacggt 1680 ggaaagtagc agccaattat tcctcaggaa gcgcttccag tcgcatccct tcctcgccgg 1740 cttccccata gctggcgccc gggctcggaa ccacaataga ggcggccgct attgtgcgtg 1800 gggctcgccc gtgcgcgcgg gggccgggga aaccctggga cggccggtag ctccgcggcg 1860 cagtggagga gggctgcggg cgcgacgcgg agagggtgtg cgctagctgc tgcagccgct 1920 gctgtcacca ccgccgcagc cgccacccga gctcgtgcgc cgcgcctgcc gcccgtgctg 1980 tgcgtggcgg gcgcgcccgg ctcctc 2006 // ID KA520158; SV 1; linear; mRNA; TSA; MAM; 490 BP. XX AC KA520158; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27189 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-490 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-490 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; 71a5d183789148abcb76ed14c586bf4b. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..490 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 490 BP; 150 A; 106 C; 119 G; 115 T; 0 other; tgagaaatat gagccagtga tagcaagatg gtgtgtaact aactgcacag ccaagctatg 60 agttacaggc atcatgtgga gactggagac atgaatgtgg gctgtgaaaa tagtgaagga 120 caggcccgag gagcaggccg ccaggagata agcagagatc tagaaagcag actccagaaa 180 aatggcaagg aaaggcagac atcatcacac accaggtctc tgaactcgac tcatccttta 240 cagccgccac actactttag gcctccctat tctattaggg agtattcttt tctttccaac 300 tgtaatattc atcactcttc acacgagagc acatatcaca tgtgtctttt ctctgtcata 360 atctcagtgc ccatcagagc ttggcccatg gcgagtgctc agaaaaatct ctgtggaact 420 gtatcaagaa gcaagagtag gagttcattg aggagttgga tctggataga atagattggg 480 ctcaccgaaa 490 // ID KA520159; SV 1; linear; mRNA; TSA; MAM; 447 BP. XX AC KA520159; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27190 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-447 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-447 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; a91b00fc61fcad43b004407cfb7b908e. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..447 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 447 BP; 87 A; 132 C; 138 G; 90 T; 0 other; aaacactggg aaggggtaac cctctcaccc ccaggagtgg cccaggggga gagaggctac 60 ctgaggggta ggaagcacaa aagggacccg ctgcagactc agggcaaagg gaatgccatc 120 ggtgctggga cctgtgagca ctacaggaga aaacgcgagc gtgatgggac tggctccagg 180 cacacaggcg aagggcaaga ggattggaca cgaagccaca aagctacttg ggttcctcct 240 tcttctcgtt tgcctttttc tgcttctgct gcatgatctc cgagtccctc tgcttgcggg 300 cggcagcaga aagcccgtca tctcggcgct ttcccttaac cgagtcgctc tgctttttca 360 tattcttctg gcgggcgagc tcgcgctggt taccgcgggt catggcgacg gcaacggctc 420 cggcctgcct ccgttgcgtc cccccgt 447 // ID KA520160; SV 1; linear; mRNA; TSA; MAM; 1300 BP. XX AC KA520160; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27191 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-1300 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-1300 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; d31d2c7bcd5f9b9486ffac954f07eeb2. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..1300 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 1300 BP; 350 A; 327 C; 303 G; 320 T; 0 other; taaatgagaa catgcatagc acacccgaga tatggaaaat attcaataac tttagttgga 60 tccttgcagt ccctaggcat tcattccccc caaatccaca tacaatgaac cagatgggga 120 gcagtgtacc tccaagatag tagtccattc ataagacaag ggataacata gtctaacaca 180 ccaatttctg acatttgtat tacatgactc ttccaactca tagtatctca tttaatccct 240 acacagaaat caagattcag gggggtcagt ccttgcagaa ggaactgtaa caaactccaa 300 aggtctagaa aatagccata cagcggaagc ccgaggatgt gggctcagga agcagtgcta 360 aaatgcagct gtgatgccgc agcagtacaa ctgtgtcccg agggcacact cttcatccag 420 gtgagccgag ggagcgcccg ttgtgactgg gcctcctgag gaatgtctgc cccagagaaa 480 tggctgaaaa ccacaggtag agagacattt tttgttcaga tatcctgatt gttttcaaac 540 gggaagttgg aaagtcctgg atgaatctgg tccctttggt tccttggcag cttctgcgtt 600 gtctagaagc ctttgggcct ttcatcttct gacaatgtca cttgagggtc ttgctaaggt 660 tggagaagcc aatgccaaca caagtcatca gcactttatc ccctcccttg agttcttcac 720 cacatggttt ggtttcgatt ttaaacataa tctggaaaaa gctcttcaaa tgccgcaaaa 780 attctatcag agtggtccga gcaggacttt ggaaacatcc tgctgtccaa gggtcatgag 840 taatagagcc aggctctggt tggtcgagtc cacgcatcca ccccgtcttc aagcagcagc 900 ctggcgcagt tcctgccgag gtcttcgggc agcatcgctg cgccctggcc ctgggggttg 960 gaagccagct cagcgctgag aaaagtgcca ttggtggtct cggcaaccag ggacagccca 1020 aagcccggag actactgatg cctttcatgt ggtctgtgta aatatagata tcaggtataa 1080 acttgttgag gatgctcctt gcagaatcca caatccggtt tgccatctga ggtgatacac 1140 gtaccgaata cctgcaactg ggagttaagg gtgatccaat ccaccccatg gtatgcacac 1200 aaaagacttc atatacactc aggccatcct tgctctccga taacactgca tgcttcataa 1260 cgaaaggggc tctacctccg tatccctcac aagtctctag 1300 // ID KA520161; SV 1; linear; mRNA; TSA; MAM; 549 BP. XX AC KA520161; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27194 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-549 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-549 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; 8c15775e6fa8224aed4cb14c0c11bd20. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..549 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 549 BP; 237 A; 88 C; 121 G; 103 T; 0 other; aagacatcac aagaaaaaag caaatttcat aaaaacaatg aggttcttca aagacattcc 60 ccaaaaaagt tgttaaggaa ggtagaccta aaatcacatc taagaacttt gagaaaactg 120 ccacaaaacc tgggaaaaaa ggtgtgaagc agttcaagaa taagcagcaa ggggatagaa 180 taccaaagaa caaattccag caggcaaata aattcaacca gaagaggaaa ttccagccag 240 acagtaaaag tgatgagcag ccaagaaacc caaatgggat gaattcaaaa aaaagaagaa 300 agaactgaag cagagcagac aactcagtga taaaaccaac tatgacatcg tcattcgggc 360 aaagcagatt tgggagatct taagaagaag attgtgacaa agagaaaaga gtgaagttga 420 tgagcgattt gcaaaagttg attcaaggag agattaaaac tcatttgcgc acgattcaac 480 tcgagtgatc cagtgttaca ttcagtttgg caatgaagag caaaggaaac aggcttttga 540 agaattgcg 549 // ID KA520162; SV 1; linear; mRNA; TSA; MAM; 1168 BP. XX AC KA520162; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27195 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-1168 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-1168 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; 9606ed2cacb17ce489af0b094e4b15fd. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..1168 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 1168 BP; 363 A; 257 C; 302 G; 246 T; 0 other; tgtatggaaa gcacagattg cagagataat acgaagcttt aagggccacg tgaggaagct 60 cctgcggcac gcggaagcgt ccgccattgt ggagtacgcc tacaatgaca aagccatcct 120 ggagcagagg aacatgctga cggaggaact ctatgggaac acgttccagc tttacaagca 180 gatcacccaa ctctggacaa agtattagag gtacagccag aaaaattaga gcttatcatg 240 gatgaaatga aacagattct aactccaatg gcccaaaagc tgtgcactgg tacataaagt 300 atttttggac tttttcacct atgcaccccc gaagctaaga tcatgattga agccatccga 360 gaagcagtgg tgtacctggc acacacgcac gatggcgcca gagtggccat gcactgcctc 420 tggcatggca cgcccaagga aaagtgattg tgaaaacaat gaagacttat attgaaaagg 480 tggctaatgg aatagtccga tgatacaaag cttgtgaaac agataatcat atcattatca 540 attccttgac gaacatagta aatgacaaat atggaaggaa ggtcctattg tatttactaa 600 gccccagaga tcctgcccac acggtacgag agatcattga agttctgcag aagggagacg 660 gtaatgcaca cagaaaagac acagagatcc gccgacgaga gctcttagag tccatttctc 720 cagccttgtt aagctacctg cagggacacg cccaggaggt ggtcctggat aagtccgcgt 780 gtgtgctggt ggctgacatc ctgggcactg ccacgggaga cgtgcagccc gccatggatg 840 ctgttgccag cctggcagcg gcagagctac accctggcgg caaggacgga gagcacatag 900 cagaacatcc tgctggacat ttggttctga agtggttaat cgagcaagat aaaaagatga 960 aagaacgtgg aagagaaggt tgttgttgtt ttgcaaaaac actcatagaa cgtgttggtg 1020 tgaagaacct gaagtcctgg gctagtgtca atcgaggagc cattattctc tctagctcca 1080 gagttctgat caagaagttg caaataaagt caaagctgga ctgaaaagcc tgattcctgc 1140 cttggaaaaa agcaaaaaca ccagcaaa 1168 // ID KA520163; SV 1; linear; mRNA; TSA; MAM; 1291 BP. XX AC KA520163; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27196 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-1291 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-1291 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; c1879459a7d47d8972b47cb12f4f1e11. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..1291 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 1291 BP; 317 A; 319 C; 289 G; 366 T; 0 other; ttcagacttc aaaggtcgtg acttgtctca gaagtcaggc tagatcatcg tctgtgctta 60 caactgatat tggggtacgt gtgtccaaca gaagcactgt gtctaccaat gtctattgac 120 aggtcctctt cagtggtctt caagtacaca ggattgtcaa agttcatgct tttcatgttc 180 ttatgttgcc aattccgcca catcaagtag ccacctactg ctgccattgc taagagcagg 240 gaaggatggc ccaggcagca gaagtccctt tagggggaac actgacctcc gatactgctg 300 tggtcacgtt gatccgcact ctcggccatt gtcctctaga ttgtatccat tgggacagga 360 acaggtgtat tttggagagt ggtcattaat ctgtggggct ggcaggcaga ggtattcaca 420 tcctccattc tccatatctt cttcacacca gtttttactg gttgtacaag ttcgtgatag 480 acaatgatgt cctgggcatc attaaggttg ttaactagag tggccagctc cgagccagtg 540 aatttattgg caccatagac tgcttcattt tccccatcta tccagtagac acgatcctca 600 aataatattg tgagtgccag gggatgagct aggaattcca gagacttcag gactatcctg 660 cgatcttggc cattcaagtc cacactggat aacatgtgca atttggaacc cagccaatag 720 aggcggccct ttataaggtt gtaattccat taggccactg gatgtccgct gtcaccagcg 780 cccgtctgtc aaacccattc attcctgctt tttcaatttt agctggttca ccccagtctg 840 accagtaaac aaagacaacg ggtccacagc tatggaggca ggctctcgcc agtcagagtt 900 aaacaggaac ttcctcttgg ttccgtctag ggtagctact gaaatagtct tagaagccgc 960 gtcagtccag tagatggtct tgtacaccca atcaacagca atggctgcag gattatagac 1020 attgtcgatc attttaacat gtctaccaac tttgtcatca attgaggcaa gatggccttt 1080 tggcttagat cagcccagaa cagtttctga gcagcgatgt cagcatcgag agccacagtg 1140 tttctcagct gttcaactag ttggatatat tctttcctct ccaagccaat cttcctgatg 1200 tctcgtctat tggtgaagat caaacttggc tctttgctgc cttgcacacg cccgtggcaa 1260 gatccatttg atagccacga ctacattcac a 1291 // ID KA520164; SV 1; linear; mRNA; TSA; MAM; 1109 BP. XX AC KA520164; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27197 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-1109 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-1109 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; b22727aa80d367da3876194bbd5fc23e. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..1109 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 1109 BP; 212 A; 342 C; 271 G; 284 T; 0 other; tcctatctat gagttcaaac ccagctgcac agtcacattc atagcctata actaggtctt 60 tgcagatatg ggagcatccg ccattattaa ccaagcattc atttacattt ctttcagggg 120 ctcgtcactc cagtccctgc agtcctgctt ctggttgcac actttactga tatcaatgca 180 ttccccactt ctgcacttga acttcccggg acccaagcac tgattgactt gcagttgact 240 tcatcagaac cgtccacgca gtctcggatg ccgttacatt gcctgctgcc gtggatacag 300 ttgccgtcct cacactcaaa ctggtcgggt cggcaggttc gggaaggttg acctcatcgc 360 tgccgtcctt gcagtcggga tccccgtcgc atcgccattt cttgtggatg cactcgccag 420 agccacactg gatctcgctg gccgggcacc tggtgtggat cactggctgg cggccacact 480 gctccaggga ctcatccgac tggtccgagc agtctgcgtc atcgtcgcac acccagctga 540 tggggatgca ggaggaggtg ctgcactgga actcgtgggg cccgcaggtt ggtggggcgc 600 agtccagctc atcgctgcca tcgctgcagt catcctggcc gttgcacatg aagttcctgg 660 agatgcagcg gccactggag caggtgaact catcagagct acacgttacg ttgcgttttc 720 ttcatcttct ccactgtcac aatcattttc accatcgcac cgccaggaca ctgggataca 780 ctgagtggag cgggcgccac agctgatttc atttatgcgg catgttctca tatctgttct 840 gggctttcat cagaaccatc ttcacagtca ggatccccgt cacactgcca tcgattagga 900 acacactggc cattgttgca tacaaagtca gactcggcgc atgtcttctt cacgttcttc 960 tcgtcactgc catcagcgca gtcttcatcc ccatcacatt tccacagcag tgtgatgcat 1020 cggccattcg tgcactggaa ctggttggct tcacatttgg cttttcttcc ggtccgctgg 1080 cgccgctctc ccggggcgcc cagcacagc 1109 // ID KA520165; SV 1; linear; mRNA; TSA; MAM; 1329 BP. XX AC KA520165; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27199 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-1329 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-1329 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; 920826ce0f5e3a5000394f83616fd54c. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..1329 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 1329 BP; 223 A; 424 C; 429 G; 253 T; 0 other; gcaccggcag cttctgcggg gggctcgggc cgctcagctc tggccccggg cctgttgtag 60 ttaacaaggg cctgctgctg cggctgcggc tgctgcggct gaggctgggg tgggggctgt 120 ggcggcggct gttgctgcat gccaggcaac gtccttttcc cctggactgc aagctgcagt 180 gtttcgggga ggggctggcc ccgggccagc atcttgtaag ctaaaatctg ggctcggagc 240 tgatgcagct ggacgggact gaaaggagag ggacccctgt tgggttggtt catcgcctga 300 gggtcgcctg ggatgagggg tcctggctgg ctcggtggca tctgtggtgg ggtcgggccg 360 cctcctgata tagggctgga cacatgctct ggggctccca gcggagacgg gtgcggtgac 420 atgtaacctt ggtgctgatc catcggactc tgaggagggc ccattcctgg gtgaggtggt 480 cgcatagcag tgcctttcat ggatccacaa tggatatctt caaccccctt gtcgtgcata 540 ccatccatgg gcttgtctga tgcatgcctt cctgagggaa gtcagcagac cccatcgacg 600 gcatagggtg tgagacacta ggaggccccg gacttggccc catcatactg tggacggaac 660 caggggatgg tccaggtccc ggactgggcc caagaatggg tccaggagag ggtcccggcc 720 ctggcgaagg ccccgggtgg ggcatcgcgc cagggtctgt gggtgtggac atctacttct 780 cctgtctctg ccagtcggta cagtgatact gagttggcga aacaaaaaga ggcgcggggc 840 gggccctgcc ggcggccgga gcgggtctcc ccgcccaagc cctaggccgg cgctgtagcc 900 cgcggcccgg cccccgcagc cgctgccgct tcctccctcg cgcgcgtcat gtcacggcga 960 tcaaacatgt ctgtgtgcgc ttcgctgctg tgacttcctg attctccgct gctcgcgcgc 1020 gcacactcac agccacacgc acacgccacc cccaccactc ctccaccacc aaacctcgcc 1080 ttgtcctccc gcggctcccg ggcagggcac gagcagaagc agctgcccgc gccgctgctc 1140 gcgacgcacc ggccccagcg cgcacaacac acactcacac tcacgcgcag acacaaggag 1200 tgtgctggct gaatctcttc cctctctgag tcacccagag tacagaaaca gagggagaga 1260 ggactagatt atgaatatga cttcattgat gacagccatc ccctcctctt cctaaactcc 1320 ggctccgcc 1329 // ID KA520166; SV 1; linear; mRNA; TSA; MAM; 388 BP. XX AC KA520166; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27200 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-388 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-388 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; c3db154cf1d528de421bce814ae75506. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..388 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 388 BP; 132 A; 91 C; 88 G; 77 T; 0 other; cacttgcata agtcaatggg cattcaaact tctcagagaa ttctagatag tcaaaagggg 60 ggaaaagtac aattccataa attgagaatg aaagggaatt gccaaccatg ggaaaagcag 120 aggttatggg agttggacaa atatggcttc aaacatccac gtatacaatt acacagggag 180 gctaaaatgc agtagtacac gtaaaaccac agctctgcat cgggcacaac aagcagttac 240 tcttactaag cattactccc cacccctgcc acctccactg cagcagaaat gaacaggagg 300 gacaggacca catgtacagt tgaggccaga gattcatccc agccctctgt ggggtccaag 360 agtcacaaga gaagttgtct acgactcc 388 // ID KA520167; SV 1; linear; mRNA; TSA; MAM; 737 BP. XX AC KA520167; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27201 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-737 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-737 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; f038d899c702ffbf684c6355680f74c3. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..737 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 737 BP; 171 A; 211 C; 169 G; 186 T; 0 other; aacatgtcgc atgggaaact ttttcttaag tcgagaatct ttagaagcat gcccttaatg 60 cgtgtgtcca tgaaatagca tagatgagca cacacacaag aaattagctc agaggaacag 120 catagtctaa ccgctcctca tgccgcccag ctaagggatc tggactgcgc aacttgactg 180 tgactctctg gcttctgact gggaccccag agactttggg ttcctgtctg ccaatctcag 240 ggccgctacc aaccctcagg gtcccgggca aagcgccttt cttctggggc ttctcctcgg 300 agcttggaat tggagcatct taaggctccc tgcatctgcc aatccatgac ttgcagcatc 360 tcctgattcc tccaatcttg tgtgtggggg cactcatcag tgaccctccc agcaggacct 420 gggatgcatg ctgtctcacc atcccccaaa gatgcatcca aagaagagca cctttcagag 480 atgagggcgc cgcttccttg ttgtttctga tggcaacttc attgtacagc tccaagacct 540 aatcagactt tctcatagcg taaaacaact tgggggtgta gattacaaag aggggcgagt 600 cttgagcaga ggtgcaggtc atgactaagt ccccgtggtt aaggttgaaa gtccaggact 660 ggtcaagcca tcttctccct cacccatcct cctgccccct ctgcccagca atccaaagcc 720 ttttcttctt tcttcca 737 // ID KA520168; SV 1; linear; mRNA; TSA; MAM; 359 BP. XX AC KA520168; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27202 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-359 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-359 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; e0a0e3f083da6a29b3317b01ad9ecc57. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..359 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 359 BP; 88 A; 100 C; 82 G; 89 T; 0 other; ggggcaggag ctcttggtct ctccacaaag ttaacactca aaatctattt ttatctggtg 60 ttggaggggc agggggtgag ttttacacag tcaccaaaaa gaacgacctg ttccataatt 120 acatggccaa cataatgaag aagatgtgtg tgtgtgagga ggtaaaacag acagggccga 180 acactgaaca ctggcattgc cagccccacc cccgcctcca tcctccctgc aacgcttccc 240 tctacctcac accagcactc cctaagggcc aggccgctgt gttcttagcc aagaattttt 300 cagcagtaca ccctgtcttt tttcgttctg accctgcctt tacaaccgtg gagtgtgtg 359 // ID KA520169; SV 1; linear; mRNA; TSA; MAM; 660 BP. XX AC KA520169; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27203 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-660 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-660 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; 195d882e4b4e35c9a719f363d377ac09. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..660 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 660 BP; 128 A; 211 C; 222 G; 99 T; 0 other; ccaggataaa aataataatg caatccaggc ggtggaggcg gaggcgagtg cgcagacact 60 ggcgggggca atttccccgc gtgtgccgga aaccggtcca agtgtcggga cccaggagcg 120 gttgtccccc tggagcccgc actgctgcgc cccgccccgc gcggtgcaac tgcgcccagg 180 ctgcgaggcc tggtgcaggg cacccagggc gccccacttg gtgtgcgccc gcagacggag 240 ggtgactacg ggctggagcg ccggactggt tatttgggga agtgcatcgc gacacctttg 300 cagatggcat ggccgtgttt tgcaacgcaa ccgggaggag ggaacacggc gagatggagg 360 gggaagcaga ggagggagta agccaggttg ggatgggaat aaagcaaact cgaaagcagg 420 gaacaagaag gaagcggtgc gtgtcatctc tgggggcagg ctccctcccg gtctccccgc 480 ctcctgccct caccagcctc cccattcgcc ccccaccccc taccccgcgc cagcccttcc 540 cttctacagc gaacgccaca gcacagggtg tgcgcgggtc ctgtttgtga cagtcaggca 600 gagaggatta tccggatcat ggcctccccg gcccgcagcc acagtgactc tcccgggccc 660 // ID KA520170; SV 1; linear; mRNA; TSA; MAM; 439 BP. XX AC KA520170; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27205 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-439 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-439 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; 8740fd0c4457a1cf81b51fb65964deb2. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..439 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 439 BP; 162 A; 81 C; 60 G; 136 T; 0 other; ttgaaaatat ggcaagagtc taaggcactt caaacattta aatacatgta agaccaaagt 60 aaatgtgaca tgggataaag gaatccataa atacgtggag aactacacta tgtttctcta 120 gaggccaatg gatagccaat ttctctaaca taattcaact ttcatcatta gacacagaat 180 tgtgcaatta ttaataaaaa tacagcaaca ttacatgtcg ttcttcatgt cttcagttac 240 tatggaatat aaaagttcaa aatactgtgt caattttata tagataccct ttgtataaaa 300 tgtcatataa tacagccacc tagataaaac caactgaata gacttccttt tgttaagttt 360 tatacttttt gagaatccca ccttttattt ttaaaaccag aaacctacca gcccaggccc 420 gattcattca tgatcaaag 439 // ID KA520171; SV 1; linear; mRNA; TSA; MAM; 780 BP. XX AC KA520171; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27206 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-780 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-780 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; 97bd4195fcbaf21c7322758da5a7c135. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..780 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 780 BP; 174 A; 183 C; 185 G; 238 T; 0 other; atagtttttc ttagctgccc tgtgacaact gggtttcaca tttcctgaaa ctagatctgt 60 ggaaggagtc ttgtcaactc tgaatattgg cttgtagatt ttccgctcga tcattggtcg 120 gaggttctct ttcagcttgt tgtagttctt cttgagttcc tgctgatact ccctctgatc 180 tgccgtgatg agacgtttgt ttttctctac agcttccccg catattcctt aaagcataat 240 ctcaacttgt tgtgccgata aagttttggg tcagctggaa tttcagccaa caatacttgg 300 gctacttcca gtggtccgta gctccaacag agccttgcag caccatctga agcatcttgg 360 catcaggagg ctcctggtta atggcaactg ctaattgcag agtcttcttc ttcatatctt 420 caatggcaac ttcaattggt gtcaaaacaa atgggcgacg ctgatcctgg tcttgatgta 480 ggggaaggcg tgcagggtgg tcaggatggt gttccgccgg tactgctcat gcagctcgcc 540 ccgaggccgg ccctccaggg tgaagggggt ggtgtacatg aacctccgca ggttgaagtt 600 cttctcaaag tagcttagcc tgtctttcat ctcatactca tcaaagtagg gctccacaaa 660 agtgatctgt atgtaggctc caacttggtt ttgtccacag gagcagagtc ttttatcact 720 tccacaaatt ctgcaccaaa acattgacta taaaatgctg agagatctca ggaagcttgg 780 // ID KA520172; SV 1; linear; mRNA; TSA; MAM; 428 BP. XX AC KA520172; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27207 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-428 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-428 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; 76aa2fce3441dc79ac9f71386f39a894. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..428 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 428 BP; 89 A; 135 C; 112 G; 92 T; 0 other; gtcagcttcc ggaagtctcg atgagcttcc aggatgggga tgaccagctt gtagacttca 60 ttaaccgtct cgtacagtcc tccccagctc ggccgcctcc tccagtaggc ccaccaggcc 120 actctccgtg aagtaccggc cggagcacac cccatcctca tcaggcgaca gggtgtcatc 180 agagacggca gactcctcca gtacgttgga agaaatatta cgctgcccac gggcaggtag 240 ctgtggtcct ccagcatgct cagatattcg gccaccaaag cagccgcatg gaccaggcac 300 atggcggcct ccgtgtagca cttcctcttg gtgtgtttct ctgccatgtt ctggagccag 360 gtcagccgca gatcaggaga ggcctggtaa ctcttggcaa ttgatccata agcatctcag 420 gatcttcc 428 // ID KA520173; SV 1; linear; mRNA; TSA; MAM; 715 BP. XX AC KA520173; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27208 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-715 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-715 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; cca2a84611e746e209e8134fc37fb3d3. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..715 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 715 BP; 181 A; 154 C; 206 G; 174 T; 0 other; acttcctaag gagggtctgg tcagcatttt tcatgatcca caggaagcag atcatgaggt 60 ttcgggtcgt gtcagcattc agcatgttgt actgcttgta gggaacgcta tagccaatgc 120 cacattctga ttaattgcac tggtcccttc ttgttcttca tctgagccat tggcacgatt 180 ttttccacct cgagcttctg cagatagagc tgtggcaaag catccaaaat gataccaacc 240 aaaggcaggt agagggcagc aactttgacc ttcacctctg gtttaacaca acgcgggtcc 300 aggtcgtgag aactcagcag gctgtggatg gcactgacag ctttcttttg tactttgctg 360 atcccagcat ccagggcagc ggccagctcg gtgaagagaa gcccggtgag gaagtgctgc 420 tggcggtact ccggtgtcag gtcgaacagg ctagcgcttc tggtcctgga aactggagca 480 ggagctggag ttatggaggg acagggagat gctggagcgg tatctgcatt cataaagaag 540 aggttcagat tgaggtaatg ctcatggctg cagagaattc tcaggaactc cagcctcatg 600 gaaatgagcg ttggaaggtt gttgagcttg gctgacagta atgtttgatg aggttaaaca 660 caaagccacg atccatgagt gagaggaggt catacaagaa gaaagccagg ctaat 715 // ID KA520174; SV 1; linear; mRNA; TSA; MAM; 750 BP. XX AC KA520174; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27209 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-750 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-750 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; d803ed516a4aaa9c933976267e6f1cee. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..750 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 750 BP; 167 A; 184 C; 228 G; 171 T; 0 other; acttggagca tcactattgc tggagcaata gtaagacatc cggttgcagc tgcgatcagc 60 aatcttatga tgctcttaac ttcctcatct gctgcacagt gtggccccgc gaggtctggg 120 ttactgctgc tcatcacccg ggcctgcagc agcttcgaac tcacagctgc agcagatgtg 180 cgtccatacg tgtggtagcg agggtccggg aggacagtgg ggccaccatg tctctctgcg 240 gctctggcag gcggaagacg tagtgcacgt aagaggcaag caggcagttt ctcccgtgct 300 ggtccttgcc caggcccttg ctgttgtgca gactgttggc ggtgaccacc acggactcga 360 aggcaaactg agagaagttg gctggcagcg atgaccatgg gctgcacaaa cagctggaag 420 agcttgtccc gcaaggaaga gcacaagggg ctctaggcgg gaggagttta ggcagatgat 480 gctgagcttc agctcatgtt ccagtgccga ttcactgatc ttctggtcca gcacacggat 540 ggggaaggtc acctggctct ccagggagtg gcagagggtg aagaacttct ccagatggtt 600 gtcacagaag aaacagcttg cacttcaata ttgaatactc ccttatgtcc ttcagcccat 660 ttaatgggag gattctgtga agggactttc ttgcatagag tagttgggtg gcagcttttc 720 caaggcaact gggagacagt aggatccagt 750 // ID KA520175; SV 1; linear; mRNA; TSA; MAM; 740 BP. XX AC KA520175; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27210 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-740 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-740 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; 6a332b804adbfd5ac173f75a59df6d81. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..740 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 740 BP; 246 A; 157 C; 136 G; 201 T; 0 other; gagtttattg aattagattt ttctatttac aactgagatc acatctacat actattttgc 60 tagtctacat gggtacatta tttctaacga gtttagactt acaatgaatg ggctcaatca 120 tacaaaaata cacgcacaca ttcacactaa ttgttttaaa acagtagtgc atacattata 180 ctcctcctat aaagccagct ttgattaaaa accgctagtt tcaaagatca gtctgatttt 240 gaagatgaac caagatacac gaggtatgat tctaaaatct atcttagcca ttttgtacag 300 ttgctatctt actggactat agtatatttt taaaaaggac actgatgagg ggcactatct 360 ggtattaact ttaaccagac agctgactgc ctcctcctcc cccccaaaac ctttggccaa 420 gagttcccca ctgtgaagac tgaaaggacc tggtgatact acagcagcag tcccgttatg 480 cttggaggtg acagaagcag ggccatgtca acctttaatt ctaccacact acacaactca 540 caaacagttc tgagattaga acatttaccg ccgtactcaa aacacttaca gacatggaga 600 gtcagctaaa acacagggaa aaaaaaaagt cataggtggg taggtaagaa ggtagacaaa 660 tgaagagtca agctgctccg tccaacacct gtgtatgtgt gctttaacta aatgaactca 720 ggaggccaat agcagtggac 740 // ID KA520176; SV 1; linear; mRNA; TSA; MAM; 839 BP. XX AC KA520176; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27211 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-839 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-839 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; 54f04945f0a968f460e934873f20826e. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..839 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 839 BP; 217 A; 233 C; 213 G; 176 T; 0 other; acgatgcagg cacacagcat gcccagcagc tgaatagctg caaatgccaa tgctgcccag 60 ataacatgca tcatgatttc ttgtagcttc ttcacaacta gagcctcaca cccctcagca 120 tagagatcag aggggttggc cagactgccg ttacagctgc tggctgtctc tctgcaacaa 180 ctaagaggga cgctgtggtt tttggcttct ttgaaccaat ctgtattttc ccagtctgaa 240 tagttgtgaa ttccacaaca gtgcagctgt ctctgaacat agtcaatggc ccggctagca 300 gcatcaggat tggttccatt gtaggtctta tataccttct gaatgctgcg atcaacttca 360 ttttccacct ttgctctgta aacatatccc aaaaccacaa caacaacttc tgtgacaaaa 420 accaagagta ggatgatgac aaacgtggca agtccacagc ggctttcccg gattgtggca 480 cagcaaccaa ttagcccaat aatgaagagc agggccccga cagctatgat caccacagca 540 gggatgagag tgtacacatc ttcaaagaag tggtcatagt cgtcgtaagt gatgaagaca 600 taggctccaa catagcataa aatgccagcg gctccccaga agatgaggtt gagaaacacc 660 agcacggtct tggaggaggt gatgccacac tggcccatgg tgccggcggt cggctgcggc 720 cctgctcggc gagcgggacg cgctcaccga gcgaggtggc aatggcgacg gcgcctcccc 780 acagggaact gcacggcctg tgaggcgttc accgcagccc ccggcgccgt cgcgcaccc 839 // ID KA520177; SV 1; linear; mRNA; TSA; MAM; 465 BP. XX AC KA520177; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27212 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-465 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-465 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; 4296058e08cafe98c5b55a0889e2624d. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..465 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 465 BP; 151 A; 84 C; 105 G; 125 T; 0 other; ctctctggaa taaggtatgt ttcctgtcct gttacatgtg ccaacaacac aacctcatct 60 tgatcagttt gaagtaccag gaaatgcgga ggaagaaagt ctaaatgttt acattcagaa 120 tgtgaggaac agggatgacg actgcatgga ggtcatacgg ctgaaggaca aaccgcatca 180 agtgatcatc cagggtgtcc atgagctata tgatctggag gagacaccag tgaactggga 240 cgacgacagt gagagaacaa atcgattggt ccttattggc atattcttaa acaactattt 300 atagctactg tgactgaaac agaaaagcga tggacaacac atttccaaga agatcaagtt 360 tgtccataat actagaagta tcgccaaaag gactggatga taaaagtgag aataagtttc 420 ttgttggatg tacttcaagc atctattttt tgcattactt ttctt 465 // ID KA520178; SV 1; linear; mRNA; TSA; MAM; 4690 BP. XX AC KA520178; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27213 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-4690 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-4690 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; ca58eb637cd7380943c4b8c8c0561329. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..4690 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 4690 BP; 952 A; 1317 C; 1200 G; 1221 T; 0 other; aaatataaat acttgtggaa aagttttaaa aacaccatgc cagtgagaac ttgatacttt 60 tcagcagtgg tgggggtgtg gagagcagga acagaagtaa cagaagttgc ccactcaggt 120 caggttacaa tttcctacaa ctgtacataa cggagcagag actcaacagc aagtgtgccc 180 tacagagacg ggagatggcc agaaaggagg cgtgtgtgcc cagccagaaa tctcttgctg 240 gctcagctcc cactggcagc tccagccttc agcccccggt tttctgtgtt ctgtttgctg 300 gtgagctcag gcacaatgta cattcagtat ctgtcagccc aacaggaaca attagcagct 360 tagtggtggc atgtaaatgg acggctattt gcacacaatc agtcaaatga ccctcggtgg 420 gtgggaccag gagatgtctt ccttccaagt ctaggggtgc ccgagagacc aggtgcgtac 480 gaacgccaag tgcacaacac tgaccggaga cggggctttg gcgaagttga cgtgggcgta 540 cagcaggaca gcaatgtcct tgtgtccggc ttccagggct atcgagagtg cggtgctgcc 600 atcgttgaga caagatggtg gccattgcag cctggctggg ccagcagcag cttgacgatc 660 tccacatgcc cgtgctcact ggcacacatc agggcggtgg agccctcgtc gtcctgaatg 720 ttgacatcag ccccacaagc cagcaggccc tttaccatgt cgatccgccc gtgactgacc 780 gccagcatga gggccgtctg tcctgcctgg cgcgttcaca tccccacagg cgaagagctc 840 ttccacaact tgcatgtcct tctctgcttc cacggcagca agggctgcca gcatgatggg 900 ggtgtaccct gccttattct ggtgatccac gttacacaca tctgcaaaaa catgacatct 960 tcacgatctc gaagttggag tgggacacgc tgtaatgcag ggcggtgttg ccattgccgt 1020 ccgccatgtt gatgacgtga cgcaggactt ccggtgagat ggcctcaaag gcggctatgt 1080 agtcccccac catggccggg atggccgact tctggctgga cacgcggaac cactcgtgct 1140 ggagggtgtt caggcagaac cgctgccaag acaccaaagc agttggccat tagcagttct 1200 atttatagac ctttctgaga cctagctgaa agcccggtca aagctttggg gtcatttata 1260 ttatttttca gtaagttgca tgcagacaac atcttttcac ttaattcata tctctccacc 1320 ttctcaggtt cgcattctgg aacctgcatt tcatcttcca ccctggtgga cgtgaaacct 1380 tccacattaa ctgcgtggtg gccttctgcc attccccgag tgtcttcatc ctcttcttcc 1440 tcctcctctt cctcgggagg atactcaggg acatcacact cgtcatctga ctcggaagaa 1500 gagctttcat ctgagctgga atcatcactg gaagtggttt cataccccaa caaactgaag 1560 attctttttt gctccatttg aatctttgtt ggcatctttc ttcttcatga tggacttcag 1620 cgtactttca ttatttgtac atacggctat ctggtcgtct gtcagattca ctggagacag 1680 catgctttcc tgggtgggga aggtatcctg gctgccgatg ggcttccctt ccatggtccc 1740 cgcctcctgc agggatgtct gtgagtttaa tggccctcct gactgaaggc ctccacactt 1800 acaggtgtat tccaaattac tgcctgtgac caagctagtt ttcaggaagt cagggtgcct 1860 gagctcttca aggcttgcag acttcatgac agagttgatt gatgataagg tgctgatgag 1920 ctgggagttg agggagccaa tctgtgagtg aggttcccca aaagcttctg ccagttcact 1980 gtagttctca gccagcagcg cctgctgttc cgccaacagc ttctggacac gctcgatgta 2040 gtgatccaag cctgtctcca tcccagacgg tgcctggggc tgggggctct ccacgaactc 2100 tcctacaggc tcatccccaa cacctacact cctccggctg cctgtcggcc ccacagtcaa 2160 ctggggagga ccacatgcta tggtcctcat tttgaggcca accagatagt tgtcgttaat 2220 actgatctgc cccacgcctg actctttggt cttcacagct gatggcctgt caaacccagc 2280 gttgccagag agcaccgtcc ccactccgat ggaccgcatc ttggtggagc tgacgtcctt 2340 gacccggcct tctcccacgg ctactgtccg catctccaca gtgtgggtgc tggtctgctt 2400 gtccacagtg ctaagggaag tgttggtaaa ggattctgtg agagtggcca cctcagtgtt 2460 ggtgaactgg ctcacctgtt ctacaactgt gctggtgtgc tggctcacag ttcgaggcac 2520 tgccatgacg gcagcttcca cctggctgac agcctctgtg ttcacacttc gggaggcgca 2580 ctcctttgga gagcagacgg tcacatcaac agagcaatct ccgcagccaa tggagcgcac 2640 ttctttgaga ttcaggttgg tcctgaggag tgccaggtca ttcacggact cctccgtgtt 2700 gctgcctgtt tcacagacac tgatgtccat acctacgctc ttgtcacaca tttccaccga 2760 acgcccaata catctgtcat gcatttccac cctttcctta acaatccacc aattcatggg 2820 cagctcaggc cccacctctt tattctcatg atcgggctgg caggagatgc ctacactact 2880 tgtctgcaca catgtcccca cacatgtgtc aaccacatcc acgtgactgc cagccatttg 2940 gtctctggtg ggtaccaccg cctccaccat cttgctgaaa acaagcggct gggccatcat 3000 ggctttatca acttttttcc tcgagccagc agcttgcagc tcttgcttga gtttagtcat 3060 ctcccggtca tgggtggttt ctttaagctg tacttccagg cgatagattt tatcctttaa 3120 ggcttctatc gtttgctgtt gcagctcaat ttctttgtca gcttcagtag tcactccaag 3180 catggcttct gtcacactga ccccagaatt ccttgtctca gtgaccatgc cgacagcggc 3240 atccttacag gacctggcgc ccctgcagta cacaacaatg tcattcatgt cctcatcggc 3300 acccacagcc acagaccgga actcttgagg ctgacactcc ccattccccc tgagctctga 3360 ggaggcctca tagctgctgt cctggatctt ctgctccagg gcctgcatgt ctgctgtgag 3420 ctgccggaat tcctttatcc tctgggtgct ctgctccacg ctctccattt cttcctcctc 3480 atagtcaatg tataattccc caccactcct ccgggtcctg gacagctgtt ccagctggga 3540 tgcattccca gcactgtagg accgctttct cacaccacag acatcgttct gggatgccgc 3600 tctttggttt ttcagctgtg aagccaactg tcttttctcc tcttgcagga cagagatctt 3660 cacctggagc acagggatgg ttcgcacctg ctcttctagc tccttcaggc gcttcagggc 3720 aatggccatc tgctcacgga tgtgttgcaa gtgcatgggg ctcacgttgg tcactggtgt 3780 ggagatccct gagctcaggg ggctgtgacg gatggagctc cccatggagg aggtggtggc 3840 agcagctggg gcatagccac cataatcccc attgccttgg tatccattct gaagctgggg 3900 catggtggga ttgtggtttc cagaacccag aaaggaggaa agggagctgg tggagcccat 3960 gcctccaaaa ctggccagcc tgggccttcg gaactcacca ggtgccacct gcatggtgac 4020 tctctcctgc tcaagtcttc tccgggtctc catcagtgtc ttggtgacat gaaggttgtg 4080 ctttgggagt tgtggtgatg gtggtggcag ctgtcggctt tctgggatgg taagaaaagt 4140 aggagaggtc tccagagggg caggtggctt tgagattggg gttgatgtaa cttggcttcg 4200 gcctaggggg aatctggggc actgcctgtt gtcatcactg ttggaggatg agagggattc 4260 agtagaagtc cacacgccgt gctggccagg tgcagccctg gagtctgggc atggcccaga 4320 tggcttccgt ctcttctgga tgttcacttt cttgatggtg tttcctttct gtatgtcatc 4380 cacgtatttg aggaaatcta agtctagttg gtaaccatag ggggtctcca caaaataggg 4440 atctttttgt tccctgtctt gttctccatt cagaatatca tctgcttttc ccgctctcgc 4500 cggctggcct gccgcactcc agctcgcaca ccacctctgc catgctctgc gacattcttt 4560 acagacggtc tcagaaacac cagggcccct ccagccagac cagtcagtgc aaatcggtct 4620 tgttcttgac aaacagcatt catatccctg ctgtcaggtt catcacagtg ggctcagagt 4680 tctgtttgag 4690 // ID KA520179; SV 1; linear; mRNA; TSA; MAM; 1638 BP. XX AC KA520179; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27214 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-1638 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-1638 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; 09c9481367331f10df4e81498cd0c478. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..1638 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 1638 BP; 353 A; 442 C; 520 G; 323 T; 0 other; tcgagctctc cggccagaga ggaagttggg cgggagcaaa ctttcttgga aggtagaggg 60 ggcagctagg ggccgcgcgc agagggagga gcggtctgca cggcgggagg gcgccgggcg 120 cggaccggcc gcggaggggg ccgcggcgcg aggcggagct cgggcgcgcc gccaggctgg 180 tggggccccc gtcgggctgc agattccctc cggctccggg agccgcggca ggaccggcca 240 ggaggcacca tggaggggag ccccatcccg gtgctgacgg tgcccacggc accctacgag 300 gaccagcggc cggccggagg cggggggctg cggcggccca ccgggctctt tgagggccag 360 cgcaactacc tgcccaactt catccagagc gtgctgtcgt ccatcgacct gcgcgaccgc 420 caaggctgca ccatggtggt gggcagcgac ggcaggtact tcagcaggac ggccacggaa 480 atcgtggtgc agatggctgc ggccaacggg ggacagaatg gcatcttgtc gacacctgct 540 gtgtcctgca ttatcagaaa gatcaaggca gctggtggaa tcatcctgac agccagccac 600 tgccctggag gaccaggggg agagtttgga gtgaagttca atgttgccaa tggagtctca 660 gacaaaatct accaaatcag caaaacaatt gaggaataca ctatatgccc tgatttgcga 720 attgacctgt ctcgactagg aagacaagaa tttgacattc aaaccattta gagtggatat 780 ctatctcaac ctccttcgga ccatttttga ctttaacgcc atcaagagtt tgctgactgg 840 gcctggccaa ctgaagatcc gagttgatgc catgcatgga gggaaagttc tgtgtgatga 900 gctgggggcc ccagccaatt ctgcaatcaa ctgtgttccc ctggaagatt ttggagggca 960 gcatcctgac ccaaacctga catatgcaac cacccttctg gaagctatga aaggagggga 1020 atatggattt ggagctgcat ttgatgctga tgggggggcc aaaatggctt ctttgtgagc 1080 ccttccgact ccttggccat cattgccgcc aacctctctt gcattccgta tttccgtcag 1140 atgggagtcc gagggtttgg aaggagtatg cccaccagca cagccctcga cagcctgtgt 1200 atgagacccc agctggatgg agattcttct caaatctgat ggactcgggc cggtgctctc 1260 tgtgtggaga agagagcttt ggcactggga tggcctctgg gctgtcttgg tctggctctc 1320 cattattgct gcccggaagc agagcgtgga ggagccgcca ctactactgc agcccaagac 1380 gacctattac atcatgaggg acctggaggc cttgctcaca gataagtcct tcatcggcca 1440 gcagtttgct gtggggagcc atgtgtacag tgtggcgaag acagacagct ttgaatacat 1500 ggaccctgtg gatggcaccg tgaccaagaa acagatgcat ctcggctcat cttccggctc 1560 agttcctcca gtggcgtgcg ggccaccatc agactatatg cagaaagcta cgagagggat 1620 cccagcggtc atgaccag 1638 // ID KA520180; SV 1; linear; mRNA; TSA; MAM; 1093 BP. XX AC KA520180; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27215 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-1093 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-1093 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; f95e4b7a3fc40d04f43254c0df442272. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..1093 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 1093 BP; 284 A; 289 C; 220 G; 300 T; 0 other; actgtctatc catttccaag gtcagtcaat aaactcaaga atcacagatg aggcaaaaca 60 acttttttga tctagggggc tggctgacac taagcaggat atttcacgtc cttgttcccc 120 tcccagtaaa tacctccctg gcacatatac acacacatct ccaaacaccc cctgggtggg 180 tagtggcact gccctatttg agaatcactg cattatatac actgttgcat atggtgtagt 240 gagtgaatct ctcaatacta gctgatcaca agggtggtcc agacagttgc cacactctac 300 tcattgtccc ttctaggatc atctcctgca gtccccacaa cattcttgga cctctctaat 360 catttacttt taagtgagac tggcagttgc agctccatct ttaagacacg aggaacatca 420 tgtgcagaag ggtgacccca cgtacagctc agcaagagaa gcttggattc tatgtagagc 480 agaaatcata ctttggcaat gtgaatttga gcaggatcca gaggcaggct gggtcctgag 540 ccactacagg accttccctt tggcagcctt gctgagaaaa agctcataaa aatagtgcag 600 ctgctgcttt ccgaagctgg acccaagcat ttgctcggtc tgatatacgt aacgctgtgt 660 ctgcttcaat cccattcatc caagccaacc tctcactaga cccaaagcaa gactcctctc 720 cagtcattct acctctcaat ttccagcctt gttcttgctg cattcacccc tggtgaaatt 780 ctgtaagcga ttatcaggct caggaatctc cactccttgg gaaacacctt agttgcctag 840 taccttccat ctcggggtca atctttctgt gtactctcca gcaggttgct tgtgctgctg 900 ctgtaaagtt catgtctacc tgattcttta cgcatgttta ccacagcctc ctgtttccaa 960 actacaaact cacaggagta ggaatagcat cttatgcatc catgtgctgc accaagaaac 1020 ccaggatgcc acatagagca gttattcaag gagtgcttgc tgaatgaatg aatacatatt 1080 tgggctgttg gac 1093 // ID KA520181; SV 1; linear; mRNA; TSA; MAM; 646 BP. XX AC KA520181; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27216 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-646 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-646 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; b583e92dd8ea6ee36f51f867f8125737. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..646 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 646 BP; 174 A; 180 C; 146 G; 146 T; 0 other; ggctaataaa ggtcctagca agtatctgac agaagcatag atagaaaatg gaaacaaata 60 ccttgctggg gatgtttccc tgcttgccct aatcttgact acagcaataa cacactgctg 120 aacagtcaaa gcgcatcacc tatctcacca gtcacacggc aagtgactgc cgttcccaag 180 gaagcaaaac gtgcgcaaac aggtcccgtg aacccaggct tctggctgag agggctgatg 240 gaggctgcca gggctgcaat atcctttctc tgggccaaga aagccagttg tgaccctctg 300 ctctccagca ggggacccca ctctcccctc catctcatta gggccatcac ccggtgccac 360 cagtcaggtg ctcttccagc atccgcttca tctcctactt gtggagcatg tcactgtctc 420 ctttgacagc cacgataagt aagacctgaa cagtgtccaa acaagtgcag acccttcctg 480 ggagataaga cgtggtggta ttttgccgtc tcaatgggaa tcagatcgac ccatgtatca 540 acccatgtga tataatcaag aaagggcctg aaaatgttca gcattcattc tcagaatcct 600 gccaggaaac tacctcccgc ctgcataatg aatggctgga tttgaa 646 // ID KA520182; SV 1; linear; mRNA; TSA; MAM; 434 BP. XX AC KA520182; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27217 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-434 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-434 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; dfee9246cca5fe06dde740095cfb432e. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..434 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 434 BP; 112 A; 98 C; 122 G; 102 T; 0 other; tgtgccattg tggtttgtgg aaagctctag aagatgtgaa gagggtggca caggcacttt 60 ggagatggga aggagagtga gtggccataa agtggttggt gggcatgagg tgggctacta 120 ggagttgtac aacttttgcc caagggagac ctaacctggg atgaaaagga ggagagtctt 180 cttaggtctg cctgagggga cctgggctta cggtcagctg acttctggct ttgccctctc 240 tgctattcca gaaccttctt tcacctggca ccaatgatgc acagataccc tgactgctcc 300 tggcccacag attctctctc aaaagggcag attccctctt gtgacaaagc acaggtatcg 360 aaaggcagtg tggctttcac agacaaccga agaccctgtt gcattgcaga aactgactaa 420 aacccaaaca aaac 434 // ID KA520183; SV 1; linear; mRNA; TSA; MAM; 3864 BP. XX AC KA520183; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27218 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-3864 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-3864 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; 415344d70703f41f735a4a04fa55af76. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..3864 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 3864 BP; 758 A; 1072 C; 897 G; 1137 T; 0 other; ttgtctggca ctattctaaa gctagtttat agatgataat gatatagaaa cgacccagtg 60 cccataagag aaatgaactc actgggtaga gacgagagag gggaagaagg agttccgttc 120 taccaagaaa aaaatgtccg tagtgatcac tcatcatcag tcccactggc ttcagattgt 180 tctcctgctc ttcatcgctg tcaaaatcgc tcaccacggg cttggctttt cctcggtttg 240 gccttttctt gccttttcct ttgtcccggc ctttctcatc ctttttattg agcttgattt 300 tcaccttaac agattttgcc ctccgactct tcttcatctt cctcttcctc ctcttcattg 360 ctttcgtcct cactctcttc ctctttggca attttctgcc gagcgctctt aaacactgac 420 tgtaagacga tggagtcttc atagatctgg gatccctcca agttgaatgt ctgagcattg 480 tgacagagga gcatgacgtc tttctccagg tcacccaggc tccggtactt atgattacga 540 attctttcct ttttgaaatc caccggtttc ctaattaatt cataatattc tggtaattct 600 tttcttgaag gtaactgaat gaagacttca ctgagctgtc gccctgaatc tatttccaac 660 tgagaattac tgggcacctt ctccacgtta cacctgtggt agagtagttt atcaccgtgt 720 cgatgatagc attcatctgc ttcgtcagtt tagggggatt tggtgacagc ttctcagctg 780 gagggcgacc tctcctcttc ttggccttct ccacatcttc ttttgcagga tctttatcca 840 cgtttcttcg tctttttcgc ttcttaagcc ggacttcctc ttccatttct tccaaattgc 900 cgtcttcaat ggcccactgt ttctccgtga gggcatcgct gtagtccaca tcccgccgct 960 ggcgagaccc cctcccgaag atcttctcct cctcctcttc acacgtcagc cgttccacct 1020 cggcgtcatc tttaataatc cacgagggca gctcgtcttc ctccatcagg cggggcttgc 1080 gtttcgggtt ccgggcatcc tctctccgcc ggtccatgtc catgcgcgat caaattcctc 1140 ctctcgtcga gcaatcattt ggttcagagt ctcgtcgtcg ggcacttcat cttcttcctc 1200 ctcttcgtgc tccagtatgg cctgcaggaa ggccctccgc tcatggctgg aagacttctg 1260 atcaaacatg cccgcctgga tcaccttctg atccacattc agcttgtact tggcggcggc 1320 gaggatcttc tcttccacgc tgttgacggt gcagagtctc agcacacgga cctcgttttg 1380 ctggccaatg cggtgagcgc ggtcctgcgc ctgcaagtcc tgatggagga ttccagtcgc 1440 tgtcgaagat gaccacagta tcagcggcct ggagattcaa gcccaggcct ccagctcttg 1500 tgctcagcaa gaaaatgaaa tactgggacc caggttcatt gaatttcttt agcaaagcag 1560 cacgatcttc agacttggtg gtacccgcag gtaaaggaag ttccgaaaag caaagtaatc 1620 ctccatgatg gtcatgaggg acgtcatctg gcagaaaagc agcacgcggt ggttagtcgc 1680 tctcaatttt ggcagaatac gatcaagtag ctcaaacttt cccgaggccc gatacagctc 1740 agccgacccc atttgaatag cccaggtgtt cagcaaaaga ttcgctgaaa catatacggg 1800 tgattgcaga tctttctcaa ctgcatgatg gtgttcatta gtgtcttagc acctcctttc 1860 cccttccttt ctctgaacca tctgtgagga ggatcccttt ggcttgcatg tggcgataca 1920 gaatcttctg cagagctgac atgtcacatt tgatcacata ctcaaccgaa gctgagattc 1980 aacttctttc ttcagtctcc tcagtaagaa gggtctcaac accttatgca gacgtctgat 2040 gatcaatata gtttcttctt catttaagtc cacccagtca tggcaaacgg tgcattaaac 2100 cactgctcaa atgtgctgca gctcttaaaa atggtgggga ggaggaagtt gaggagggcc 2160 cagagttccg ggagcttatt ctgcagtggg gtcccggtca ggaggatcct tctgggggcc 2220 acgtagtgcg tgttgaggac ctgcgtcagc ttgcagtggt gattcttcat gcggtggcct 2280 tcgtccacta tcatgtattt ccaccggatc tttggaatgt gcttgtcttt tatgatgtac 2340 tcataagtag tcaggaggac gttgaatttg ccactccgta gctgggggac aagagagcga 2400 cgcatggcag gggtgccctt gaaatcttca ccacagaagg agcccatttg tcaaattcat 2460 acgtccagtt agatagagtc aacaatgatg agataggggc cattgagtcg tttgtgctcc 2520 atcagataag tgatgagtgc aatggtctgt atggtctttc ccagccccat ttcatcagct 2580 aagattccgt tcaaattgtt attatacaga gaaaccatcc attccaggcc ctggaggctt 2640 cagggttcca ttaatgagga gggccgactg cttctccacc ctctcagaga tggcgtgggc 2700 cacggtatag taggactggg agcctcgggc actgtactgc atgctgtact cgtcgtccac 2760 atcctgctta gctgtcctgc ttggcatcct tctccgaaac ctcctcgctg tttggatcca 2820 gaagtatttt ctcttcagtt tcctgcctgc tggactcttc ctcctcatcc tcccataatc 2880 agaatcactc tcttcactgt ccgatctagg ggcaacttcg taacatttcc aaccaggcat 2940 ccagctgact tgctttgggt gcttctgggc caaacaggac cttgccagtt tctgtgtgag 3000 tcactttgac ggggaggtca ctcatctggc tgctctcatc tatgggctgg tcccagggca 3060 gactcccctc cttctgcgtt ctcttcagcc ttcttcatcc tcctcctctt cttcttctct 3120 ttggccgcct gggcttgctt gtgctcccaa accaggttag tcaggttggc cacatactca 3180 tcagtctgct gcaagaggta tgctaaacgc ctgtctttct tttgatcgat cagttttcta 3240 tagccctctt catcttcagc caatccgcat tctctccttc tcaatccgct ccgtctcttt 3300 cttctgctcc ctttcggtgt tggcatgcca ggtggccact gctttggaaa gcttctggat 3360 cttgccagcc acagaccgat gatactcctt aaagtctttt gcatgttgca aaatactgtt 3420 caggtattcc tggtctgcct tcgcttccgc tcctgctcaa tcttctgctg cttctccagc 3480 ttctccgtca tgcgggcttc cctcagggtc tggcgcttgc tccgcttgta cgctttggag 3540 ttgagggccg tctccagggt cgtgtcccgt cgcatgcagg ccaccacctc ctgtcgcagc 3600 tgacggaaat tgagtaaccg aagtgctttc agttccacgg ttgctttggt tcgtaagtct 3660 ggtggcaaag agccaggcag attttccagc tcctgtatcc tatgggctat gcgagcctga 3720 agtctgtccg ctcctgcata atctccacgg ggtccaggcc ttgcggtttc tggacagggc 3780 tgatccggct ctgcttctgc tgcagctgca ggatgggtga gggctgcccc ggggccggct 3840 gcggtacgga gggtccaggc acgg 3864 // ID KA520184; SV 1; linear; mRNA; TSA; MAM; 394 BP. XX AC KA520184; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27219 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-394 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-394 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; 89846d1414988b59ecd0721ed808c725. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..394 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 394 BP; 123 A; 83 C; 84 G; 104 T; 0 other; ggggtggaaa agtagaataa cctaaaacac aaacctaaag gaacccactg catttaacag 60 agttcgcagg tgcttgtggg caaacacatt tcctctccag aggtcaaaga gacacctggc 120 tatgctgtca tggtacatga gatggaaaag ccctacatgc cactatgcta atggcggttt 180 gcaagtgctg catgtagagt ttacaagatt tgctttgctg tgcttcatct gggagccagt 240 ttttctccca ttacctccac aaacagaatg gcaagaattt cacatctcta ctactgtgac 300 tttaaaatga tgactacagg cattataaat gtcacataaa tatcaggtct acctctgatt 360 acagtttagg taaagctgga agagtgcata agac 394 // ID KA520185; SV 1; linear; mRNA; TSA; MAM; 1174 BP. XX AC KA520185; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27220 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-1174 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-1174 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; a166fafe1b196be9f3cee337a0685c66. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..1174 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 1174 BP; 277 A; 326 C; 283 G; 288 T; 0 other; gggaatggga atcctagatc tctgactgag caccgccccc gcctccgtgc ccgcgacatg 60 gcccaggaga agatggagct agacctggag ctccctccgg gctcaggtgg gagcccggcg 120 gagggcagca gcagtggcgg cggcgggggc ctcaggagat ctaacagcgc ccccctgatc 180 cacggcctca gtgacacttc tccggtgttc caggccgagg cgccgagcac caggcgaaac 240 agcacaacgt tcccgaatcg ccacggcctg cttctgccgg cctccccagt ccgcatgcac 300 agcagccgct tgcaccagat caaacaggag gagggcatgg acttgatcaa tcgagagact 360 gtccacgagc gcgaggtgca gaacgcaatg cagataagcc actcctggga ggaaagtttc 420 agcctgagcg acaacgacgt ggagaaatct gcctccccga aacgcatcga tttcattccg 480 gtgtcgccag caccgtcgcc tacccgggga attggaaagc agtgtttttc accatccttg 540 caaagttttg tgagtagcaa tggattgcct ccaagtccta ttcccagccc aacgacccga 600 tttactaccc ggagaagcca gagtcccatt aattgcatta gaccaagtgt tcttggacca 660 ttgaaaagaa aatgtgaaat ggaaactgaa tatcagccaa agagattttt ccaaggcatc 720 accaacatgc tttcttctga cgttgcgcag ctgtcagatc cgggtgtgtg tgtatcttcc 780 gatacccttg atggaaacag cagcagcgcc ggatcttctt gtaactcacc agcgaaagtc 840 agcactacca ccgactctcc tgtgtcgcct gcccaagcgg cctctccatt tattccagta 900 gatgaacttt catctaagtg attcacccac ccttcctgag actcggtttt gtttttgctg 960 aactttgtcg attaatttga ggctatttcc tatttgaccc ttttcctttt ttggaatttc 1020 ctgaaatgtt gttattctag agaactttta tgccagattc ctgcggatgc ccttgaattc 1080 agtgtagtaa tattttcaga ctttttccca ataagtgtgt tgaagcatac atctttacgc 1140 tgctaatatg tctaaataca tatgttatcc cttg 1174 // ID KA520186; SV 1; linear; mRNA; TSA; MAM; 1380 BP. XX AC KA520186; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27223 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-1380 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-1380 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; 7ead5724da4a94ef1b8cc07007690f12. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..1380 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 1380 BP; 378 A; 331 C; 315 G; 356 T; 0 other; agagcatgtg gacgctcagg cgccgctcgg ttgccagttt cctgccccgc tccgcgctcc 60 cgggctttgc ccctacccgt gccggggccc cgcggccggc gaaggacctc tcgctctccg 120 gcctccaggg cctgcgcgcc aaggccgcag cgcgtagcca gtctaaccag gccctggatg 180 tcaaaaagca gagtgtctgc tggataaatt tgaggacagc gggaactttg ggtgatgctg 240 gcgaaagact agctgaggag acactggact ccttagcaga gttttttgaa gatcttgcag 300 acaaaccgta cacgtttgaa gactatgatg tctcctttgg gaaactgggt ggagatctag 360 gaacctacgt gatcaacaag cagactccaa acaagcaaat ctggttatct tcaccatcca 420 gctggactgg gagaaactgg gtatattccc acgatggcgt gtccctccac gagttgctgg 480 ccacagagct gactcaagcc ttaaagacca agctggattt atctgctctg gcctactctg 540 gaaaagacac ttgctgccca gcccaatgct aaagacgtga aaagctctaa agccaagacc 600 ccagccttgt tctgcagctg aatggctagc tttttccatt cctgcatttg aggacagttg 660 cattgtatgt aacagctctg tgaaaagact gtgtcacctt ccaccctgcc ccctgagttt 720 agatttttaa tttccataga gttttttttg aatgttttgt ctgatttcct gcctcatgtg 780 atagccttat gtttcataat gtctgtatgc ccataccttt gtatataacc tcacaactaa 840 ggaaaacaag ggaggagaaa taaatgggct tgaccgttca ttctttgaag gacttaccac 900 aaaaactgca tgaagaatat ttggccaacc tcaccatact atctcaaaat gagacttatt 960 aaagggaagc ctaaaatgtt cctcctcctc ttaaaagtgt aaacacttct aagcccttta 1020 gtactcaagc atcagtggca actcgggaac tgtcaaacaa agactatttt ctctttgtgc 1080 tttgtgaccc agggtgtgat ggggcaacgc acgaagtgtc ttccatatgt gcatatatat 1140 gtacatacac atttacgtgt gtatacatat tttttaagga tcggtataga ataagctatt 1200 gaaacatagg tctgagtatg cgaaaagtct cccaaagacc agggggcagg gaacatctcc 1260 ctaatctcct ggatatagta taataaacga ggtcaatgaa gctaaagagg tgcttggcaa 1320 actgtgaaag cccacacaaa tgaaaagatg ttggtgtagc aaaataaaac ttaactctca 1380 // ID KA520187; SV 1; linear; mRNA; TSA; MAM; 506 BP. XX AC KA520187; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27224 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-506 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-506 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; cc2181da4eb7d29f6f525f0bcc90ca9e. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..506 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 506 BP; 103 A; 152 C; 126 G; 125 T; 0 other; ttagccggat ttattcttgg ctgccagggt gctcagtttg tgtccagtgt gcccaggtgt 60 gatctgggca agatttgctt ctgttgtgaa gcttgaaact cttcccggtt cagccttgta 120 gtgctgttca ccttctcctc aagctgtgtg ccttgaatgc cctgaccacc accgtctgct 180 tggtggcagc gccacctcca gatctttgca gccagaagat cctgcatctc tgcggaagaa 240 gtggaggaac acagacgcgt cccagaccct gatgacttcg tgccgccagt gcctccccct 300 tcctattttg ccacgtttta ctcatgcaca ccccggatga accgcagtgt tattcccctg 360 ccacatatct atggagcacg aatcaaagga gtggaagtgt tctgtcctct ggacccccca 420 cctccctatg aagctgtggt gagccaggca gaccagcagc agataccaga aggaccagaa 480 gttgccacca gcccattgga gccgaa 506 // ID KA520188; SV 1; linear; mRNA; TSA; MAM; 806 BP. XX AC KA520188; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27225 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-806 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-806 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; e9534e17c1f3dbd7feea5e4a51bac77b. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..806 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 806 BP; 176 A; 229 C; 248 G; 153 T; 0 other; cacacctgga gaagaaagcg catccatacc aactcccaac acaaaccagc tgtgtccggc 60 gaggagctgg agagccctcc gacccctgag gacaagatcc aagagtgatc ctgtgctaca 120 tcattctgcc gagagaggct gtgaggctgc gactcagact gagggaagac tggacttggc 180 tgcagtgacc ttgaggagaa ggttgagatc ccgagcttca agatgcagac cgaggtcttt 240 gatagattac aagtcttaca tggacaccaa gctgctggtg gcgagggtcc tggagcagtc 300 ctcctgcacc atgaccccgg acatccatga acttgtagaa aacatcaaat ctgttctgaa 360 gtctgatgag gagcacatgg aggaagctat cacaagtgcc agttttctag aacagcagcc 420 cagcactgcc agggccctgg tactgccctc gcggaaacag cccggcctgc tgcacctgcg 480 gagctgcgga gatctgagca ccttcgtccc cgcggggagg cccccggccg agaggaggcc 540 ccggcccagc ctcatcggcg tcatccgaga gactgtcctg tgaggctgca gggccggggc 600 tcctgaggag caggaagaca ggtgggctct ggaaggcagg gagcctcttg aggggacggg 660 ttccctgtct gtttcctgac tgggagttag ggtgcccttc cggcttctcc tcagaaagag 720 gggggcactc cagagaacat ttattcctgc tcctgggctc ccgggttctc ctttctgctg 780 gctgcaggcc cttgacggac gaatga 806 // ID KA520189; SV 1; linear; mRNA; TSA; MAM; 450 BP. XX AC KA520189; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27226 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-450 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-450 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; 7f2bf15e295d79d1e80c9e8d721e5a19. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..450 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 450 BP; 116 A; 106 C; 113 G; 115 T; 0 other; tcacatagtt agccaatagt agcaaacagt tcatgcaact atgtaaataa gaaagaaaag 60 cgatattgca ctaaaaaggg gaactttgca ggactaattc acctctttca ctgactcaat 120 gtaaccagcc attttctgta tgcattggca aacctggcct gttccacgtt ccgacaggtg 180 gacagtactt gatcgatgaa cctgtgctcc atttccaggc ccagggagtc tggagctggg 240 gtccgcttca ggcgtttgat ttcctgggaa tagccttgct tgctaaagtc actgagtcca 300 tccacctcca ttgcctgaga cgtgtggggg cctgctggga taccgtgcaa gtcacctgtc 360 ggcaggtgac aactggatca cactgtgagg aaacctacca tttaagtgat gctgaaggta 420 gaaaacatgc cgtgggtttc atgtcctggg 450 // ID KA520190; SV 1; linear; mRNA; TSA; MAM; 353 BP. XX AC KA520190; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27227 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-353 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-353 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; d1ef4778282c2677b563b1ffb8ee8574. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..353 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 353 BP; 87 A; 76 C; 81 G; 109 T; 0 other; ctgtggtctg aaacatgcat ggatgcccag tgtttagtag aagatagttc atcaagaaga 60 atcttgttag ccaggtgctg taaaacccag atgcgatgag accaggcatt atagttgctt 120 gggtatctcc ctgctgcttc accacagacc tccatctctt ctcgtattag ttgctgtgtc 180 ctttctgcag gaattattcc caagtttcct ttggtcataa aggaaggcaa ggaggtttcc 240 tgaattagct gttgtagcac ccatcgcttt ctggactctt cggaaactta gttaaggcca 300 gttttcccag atgtaagtcc ttaattggat ttaaagtacc tgagaggatc agc 353 // ID KA520191; SV 1; linear; mRNA; TSA; MAM; 1102 BP. XX AC KA520191; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27228 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-1102 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-1102 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; 6378f52c6d8c318994467a4d52e3af75. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..1102 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 1102 BP; 450 A; 173 C; 243 G; 236 T; 0 other; aagagaggat gttccaaagg catggttgaa attgaattgg aaatcttgta atcactcgcg 60 agattgatgt ggcaaaaaat cagtcctctt ggttcatcaa caaaaaatct acaagcccaa 120 aagcagtaga agagcaagtt gcagccttaa atattcaagt gggcaatctt tgccagtttc 180 tacctcagag tttgctaaac tcagtaaaat tgaactcctt gaagctaccg agaagtcagt 240 tggtcctcca gaaatgcaca aataccactg tgaactgaaa aacttcaggg agaaagaaaa 300 acaactagag aacagaaaac cgaatatcta gagaaaatga ttcagaggaa tgaaagatat 360 aaacaagatg tggacaggtt ctatgaacgt aagcgacatt tagatttgat tgagatgctt 420 gaagcaaaaa ggccgtgggt gttcgtcagg aatatgaaga agtaaaacta gctcgggacc 480 aagccaagga agaggtcaga aaacttaaag aaagtcagat tcctataaca gaacgcgttg 540 aagaaatgga aaggcagcgt cacagtttgg aggctcgaat cagagagaag gttatatttc 600 tgaggagaca tctcaaaaat gcaaacataa gcaagatgtt atagaaagaa aagataaaca 660 aagcaggctt taacagtaaa acaaaatgaa gagcatgacc gacagaggag aataagtaac 720 acccgcaaaa tgatagaaga tttacaaaat gaactgaaga ccacagaaaa ctgtgagaat 780 cttcaacccc aaattgatgc cattacaaat gatctgagac gagttcaaga tgaaaaggca 840 ttatgcgaaa gcgagataat tgataagcga aaagagaggg aaactctaga gaaggagaag 900 aggagtgtat tgtacgtttt gacaatctta tgaatcaaaa agaagataaa ctgagacaga 960 gatatcgtga tacctatgat gctgttttat ggctaagaaa taacagagac aaatttaagc 1020 aaagagtctg tgagcccata atgctcacga taataaaaat gccaaataca ttgaaaatca 1080 tattccatca aatgacctga ga 1102 // ID KA520192; SV 1; linear; mRNA; TSA; MAM; 325 BP. XX AC KA520192; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27229 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-325 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-325 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; 2173d4d6a2abba239d412011e13c9b02. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..325 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 325 BP; 149 A; 54 C; 63 G; 59 T; 0 other; tttctcacag tcaccgtgga tctagagcaa agacgacact tagaagaaca gctaaagaat 60 tgcaagcagt agactcagga ttgattgcct tacatgagac aaacaagcat ctggaacaca 120 aagataatga acttagacaa aagaagaagg agcttcttga aaggaaaacc aagaaaagac 180 aactggaaca aaaaattagt tccaaactag gaaggaacag gatacttgca atcttgaaga 240 ggaagaacga aaagcaagta ccaaaatcaa agaaataaat gttcaaaaag caaaacttgt 300 tactgaatta acaaacctga taaag 325 // ID KA520193; SV 1; linear; mRNA; TSA; MAM; 860 BP. XX AC KA520193; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27230 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-860 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-860 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; 0c8609683bfa17bab1fb267d4ff8543e. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..860 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 860 BP; 302 A; 153 C; 179 G; 226 T; 0 other; tagaatcaga ttatatggca acctcagcac agctacgtat cacagagaat tggatgaaaa 60 tagacagaga ttattgcaga aatgcaagga acttatgaag agagccaggc aagtatgtaa 120 cctgggtgca gagcagactg ttcctcaaga atatcagaca ttccaaatgg acacaactcc 180 tcacccccgg tgttcctgat gctttattaa ctgaggaaag atcaagagcg tcttgcttca 240 caggactcaa tcctacgaca caaaaagaga agaagaaata gagcaattaa ctgcggaact 300 aaagataaag aaagttgaac tggataaata tagagaaaac atttcacagg gcttaatcct 360 ttaaaagagc tggtagaaaa aattaacgaa aaatttagct atttttttag ttctatgcag 420 tgtgctggtg aagttgacct ccatacagaa aatgagaata tggaattcga attagagtta 480 aatttcgcag tagtactgaa ctgcatgaat taactcctca tcatcaaagt ggaggtgaaa 540 gaagtgtttc tactatgtta tacttgatgg cacttcagga gcttaacaga tgtccgttcc 600 gagtagttga tgaaatcaat cagtcaatga acgaagagtg tttgaaatgg ttgtaaatac 660 tgcaaaacac atctcagtac ttctttatta caccaaagtc ccttattctg aaaagatgac 720 agtattgttt gtctacaatg gtcctcatat gctggaacca aacagatgga atttaaaggc 780 tttccaaagg cggcggcgcc gtattacatt cactcagcct tctcaatgaa agtgaagggc 840 aagaacttgg agacttttct 860 // ID KA520194; SV 1; linear; mRNA; TSA; MAM; 460 BP. XX AC KA520194; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27231 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-460 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-460 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; b41c437bcff6138ae96a1d9a69a81e6e. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..460 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 460 BP; 165 A; 86 C; 66 G; 143 T; 0 other; ggacaactta tatacatatg tacaaaatac ctactgtcag aatcctctta taatttcatt 60 tgatttacaa aaatgggaca gcaaaataac ttaggtcact aatactgtac aaaaataaaa 120 ctgattaaac agttgtaaag atcagtatct tacagtgtta cagatcattt atctgttgtg 180 aaagaacatc tcaatctatc cagagtgatg agtactgtgc taaatctacc tgcaaactga 240 caactaatca gtttctgtaa ttataactac caaatataat tctcaaaaga agcatgatgt 300 agggctacac accttaaagc cagggcatcg ttccacagtg gtgaagggct ttcttcttcc 360 ctaaccaagg agaggagttc tcttaactct aaaactattt aaattttcca gaatatgaca 420 actacttaca gtattagata gaacaatttc tctttctttt 460 // ID KA520195; SV 1; linear; mRNA; TSA; MAM; 508 BP. XX AC KA520195; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27232 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-508 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-508 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; 05d3a1b4a7b91505cee0e56995a82d9b. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..508 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 508 BP; 162 A; 87 C; 97 G; 162 T; 0 other; caatgaactc tagtagtcct atttgaacca tatcttgata gagtaaatct aattagaatg 60 ctggttcctg ttttgttacg tgttaaaaca ggagttatca caaagaataa aaagccttga 120 gtttatacgt tatattatta taacatataa gagaatatca aatgtgagtt cttcaacgac 180 ttgaaaaggc aagtacaact ttttttggga agtaaattgt gcattttttt tttaaacaag 240 ttgctgcatt tacatccatc taagtgctgg acaaaagcca tatatagatt tactcctgaa 300 actgtaaaga ttgtctttca ctgactttgc ttggttttcc ttcatttcgt tctgtgaggg 360 aaagatgagt ttgtacaagt tagtgggttg ctaggcaacc ccaaactcct cactcattaa 420 aaggcagcgt gcagaggatc acaagcagaa ccattccatg agttcagtaa gaaacaggca 480 gcctaaccta tttcgtatgg aagagccg 508 // ID KA520196; SV 1; linear; mRNA; TSA; MAM; 3835 BP. XX AC KA520196; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27233 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-3835 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-3835 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; 0de97fa4b291b66d797c0deb3c786efa. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..3835 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 3835 BP; 922 A; 1021 C; 963 G; 929 T; 0 other; tcccagtccc taatgttaaa agcagttctt tttatagaac tactaatgca actacactgg 60 ttaaacaaat caaggaaaaa cgccgtgcag gtgatggcta ctgtactgga agttggaatc 120 agctgtgacc catgcttgct gcaagagccc acactggttc tgaactggaa acaagcatgt 180 gtcaggtgaa atgatgagtt caccaatagg tgggcacccc aggtttacac aacacatctc 240 atagcacacg tataaactag agtgcaccat agctccctgt tttaaatatt agataaaatt 300 gtcagaaaat gcttctgatg aaaaaaagaa atgtaaacat ttcccccacc atcagtgctg 360 actcccctat ttgaggtttc ttcttaatga tgaaaactca gttcattttt ctgaccacat 420 aaaggccaaa attatgttat cagataaatg gcatattatg gatgtagtgg ttgaggccat 480 tttagatacc tggatacaag atctatagtg gtgaggctac tgatgtaaaa tgtaaaagat 540 acagtgatgt attttcatcc ctgcatgttc catgtgcctt ccttttctga aagagacgac 600 tctgcagtct cctctgaaat cattgtggtc ttttccctta gcactcacta cttacaggga 660 tgtattattt ttcttttcac atttcacccc ccttttcttt ttacataact cttgcacctg 720 ttagtgggag ttttgtagga atatgagatg gtaaccaaca atgcttttcc ccagaaagca 780 gacgttccca gagctagtta ccattatgca ctcattcaaa taaaacccaa cagagtcaaa 840 gccctcctgt tcatggcatt atggtacaat aagatgaggt taattaaaag gattggaaaa 900 tttggaaaag ttaatagagc ccctccttct ccttcagcat ctgttgtata tattctgccc 960 tcacatcttc gccatttcac agggaaacat gtactgtaaa ataagcagat tataatgcgt 1020 ttccaaacag aatgtctgct tctatcctta aagcatgtat ttaacattag aaaataaaag 1080 tgcagcttat gttcaaaaag tacaattcat acaaagcaag gtttgaaagt tctgtactta 1140 gtgtaacctt tcaaaggttt gtcttgatta gtataaattc agactgctta cccattgact 1200 ataagtaact tttttgtttt caagtcttta gatgacagat catgctggag tagatgtgct 1260 cttgcttgca taaagacagc tgtgctatgg cgttttgtct caaaaggtaa cgtgattcaa 1320 gagagtggtt ttgctaaaga aaccgaagca cactcgtcat tacattaaaa ggtaagaaaa 1380 caattctgaa agacagcaag cagaaagggc ccagaatcac tgtgtgatgc cacaggtcaa 1440 ctcacccagt cagacatatg tacaccagtg ttgtatcttt aaaattctac cccagtcttg 1500 gccttactcc ctccccccac ccaccaccac ccccgctgcc ttccctccca cagtcagaga 1560 cagttcagag ttgcctctgc aaggggacca agtgttgact ttgatctcag gctacaatgt 1620 gcttttaaaa acaacgcagg gagaggaaaa ttagactaga gaccaaagaa cagcaacttc 1680 ctatgctggc agcacgcctc ctgggggccg tggttcccac gtgtctgtct gtccgctggg 1740 agtagtttgt ccttccaggt ctgtccctcc ctggctgagg tgggcagcac ctcacaaagg 1800 gttggccagc gcctttttgg atcgcttgat catgctgggg tggaactctg tgtgccgccg 1860 ggcgtgcttg gtcaggtggt cgctcctcat gaagcgcttc tcgcacagcg gacagcggaa 1920 ctgcttctcc cctgtgtggg tgcggtagtg gcgagtcagc tcgtcggagc gggagaactt 1980 tttaaggcag tctggccatg tgcagggaaa gggccgttca cctgagagga gggagactca 2040 tgagagggcg cgtgtgccag gacctcagaa atgaagatga cagactaggg tcttgactct 2100 ttacatgtct ccacttcctg gtcccggctc agcaactctg aaatggcaga gataatgggc 2160 tttgagatgg gaggattttc catagacttt cccacagcca ctgtaggggc acttgtgcct 2220 cttttcggag gcgtgtttcc ccttcgcagc cactccaggg tggaggaggg agagcgggct 2280 gggcgcgctg ccaggatcct gtctctcctc cgggctgtgg gaaggactcg acccagattc 2340 ggtggtcacg tcgctgtcgg atcccatatc ctcatccgga ctctccaggc tgtcgctgca 2400 caccgagggg gtctggatgg gtcggtactt gttcaggtcc aacaagctct tggcgatggt 2460 gaccagcgtg cagtaatcct tccaggtatc ccccgggtca ccatgttcct tggtcacctc 2520 gcgctcaggt agtcgcagcc gctcggcgtc cggagcgccc ccatgctccg gcaccgcagc 2580 gcggttcgaa atggaaacca gacactgggc agccacgaag tccatgtagg cggccgcgga 2640 catggtgcgg gcgacagcag ccccggcggc gcggccaaac ttggcggtgg ctgcggaggt 2700 tcggttcgcc gtgccctggc ctcggactac gagcgctgcg ccgcgcggtg gccaaggggg 2760 cgggggcgcg gggcgcttcc gactcgcaga gcgcgaggcg acctcagccc ctcatcttta 2820 cgtaaccggc agcgcctccg cacgcagcat ccacggcccc gggctccgcc gcgctgccgc 2880 ctctcgccgc cgccgatgcc cagagccggg cgcgatcccc accgacgggc gcgcccgcca 2940 ctccgagctc gctcccttgg aaagatgcca cacgtggcgg tcgcaagttt attcgaccga 3000 aaacgccccc gaggcgctga gagaggaaac tgcaagagag gtacacgccc tcggccgcct 3060 ctccgtcgag ccaaagcccc aagacattca cccaaccacc tggacgcggg tggcaagcgc 3120 cggacgaagc gccaggtcta agagacactt ttcccccagt ccactgacag cttctgagcc 3180 cctgctcttg ccggtccgca ccgtgccggc attctctcgc acagtaacaa tttcgcagaa 3240 tcccatcacg tcacaatccg aaccccctcc aattggccag tggggagggt gattcaactc 3300 tgtttacttt ctcccgctgc cagtcagaac ggcctttcgg tggagaggtg cgtctagaac 3360 tgaggcgcgc ggccaatccg accgttccgt ttcgatgcct cgtgctaccc ctacagcctc 3420 gaacgctgac atttaaaagg gtaacagccg ggaggctgga aaggagcagc cggacgtctt 3480 tgggagtgcc cctcaatccc ttagccggtc caggcctcct ggctcacgtt ccagctggcg 3540 gagttgtagg atacaccttc cctactcagc tgcgttcttt cttatgacaa acgattttcc 3600 agctcgcaaa cagttaagtg acttcctgca aacgctacag tcccagcaac cagtcttcca 3660 atcaaaagta agttggttga tgtcactgac attggcttag ccaatcagaa gggcgttccg 3720 aagacaagcg ctccacactt gtaaacggga agagctgtag tgaaactgaa tatatccttg 3780 tactttgtgt tgctgatagt aaaatggaga tatgtatggg agggcagggg tgatg 3835 // ID KA520197; SV 1; linear; mRNA; TSA; MAM; 384 BP. XX AC KA520197; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27234 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-384 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-384 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; a5748858129f8db4b0939dda5986540f. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..384 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 384 BP; 62 A; 104 C; 107 G; 111 T; 0 other; tggagggctt actcctctgg aagggatttc tcaggcttgc tgtgttccgc tgcctgtcaa 60 gtttgtcact gatggagaag ctcttcctgg tgtgggcata tggtgtgctt ggctcctctg 120 ctgagtagct gttggcgcgc tctatcttgg aaactgtgat gttgttcgac agggttctgt 180 ctgaattatc accctcctgg gggggcactg tgatggtggc cctccggccc ttggcctcat 240 tctcctcacc atcagagctg gggcctctcg ctcgggatgg cagcacaacg attcctccac 300 tttccctcca agacctccca ggaaggtggt tctgtcagca atcacttgag gagcattgac 360 acatctcgtg tcaatacagt ctgt 384 // ID KA520198; SV 1; linear; mRNA; TSA; MAM; 530 BP. XX AC KA520198; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27235 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-530 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-530 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; 2c6227498dfc525c658375ed30e56670. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..530 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 530 BP; 156 A; 118 C; 122 G; 134 T; 0 other; taacgatgac gctcagtttg atgcttcaca ctatgacagt gaaaaaggag aatttggagg 60 ttttggctca gttagtggaa aaattgaaat agaaatcaag atcaaccatg aaggagaggt 120 aaacagcatc attgcaacaa agactccatc cagtgatgtt cttgtttttg actatacaaa 180 acatccttct aaaccagacc cttctggaga gtgcaaccca gacttgcgtc tccgtggaca 240 tcagaaggaa ggctatgggc tttcttggaa cccaaatctc agtgggcact tactgagtgc 300 ttcagatgac cacaccatct gcctgtggga cataagtgct gttccaaagg aagggaaagt 360 tgtggatgcg aagaccatct tcacaagagg atgtctcctg gcatctgctc catgagtccc 420 tctttgggtc ggttgctgat gatcagaaac tcatgatctg ggatactcgt tcaaacaata 480 cttccaaacc aagccactca gttgatgctc acactgctga agtgaactgc 530 // ID KA520199; SV 1; linear; mRNA; TSA; MAM; 482 BP. XX AC KA520199; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27237 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-482 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-482 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; 61566549d9e30f2753f34f0cf751c4a8. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..482 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 482 BP; 167 A; 116 C; 89 G; 110 T; 0 other; aaggaatcaa tatacaaatg aataaaaata gcacatgtcc aagcaaaaaa gggcatgagc 60 tgggcctgag ttgccactta aaactccatc attcagtatc atacaaaatc ctcaaaggct 120 gcctggaatc agggaccaag gcattcctga acatgccagc cacccaggtc aactgctgac 180 ccaaagtcaa cgacacaagt gaacattaga cttcaagtat ccaaggtgct acaagagctg 240 gtcctctcaa ggactcaggc tgactctcag aagctcccct tccctcacaa catcccattt 300 tgtacaaaag gtgaagcact gcttatggtc actacaaaac acaggagtgg gacgtgaggg 360 ataagagaac tgatctctga aatataccag cctaacaaat acatataaat tctttaacat 420 tttgtacaac tagaaggtgc atgagctggt attcaagcaa tcactttaaa ctcttacttt 480 tc 482 // ID KA520200; SV 1; linear; mRNA; TSA; MAM; 1099 BP. XX AC KA520200; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27239 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-1099 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-1099 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; 14c4484d42611cdaaf0e5a45315252f5. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..1099 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 1099 BP; 275 A; 261 C; 263 G; 300 T; 0 other; acaatcagga ggaggacgcc cgcacttcgg aagggatagt cggtgccgtt gatctccacg 60 ctgaatctcg gcttgactgg gtgaccggaa ttgcacaggg aggtagctta tatgaggatc 120 acttgtaaac accgccttga caaagtcctt tgagcatgga cggcatcgac ttgagggctg 180 atggctttct gtaatagcgg ggatacgctt tggccatgca gttactgatg tcttttgagt 240 ctgttgctgc ctggatcttg actctttcgc atccctgaga tgaacagtaa ctgtgaccat 300 ccctgtggct tttggcttta agatacagaa acagcaacat agaatttcct ctcagactgc 360 ttcttctgca attcctccag tgaatgcaca ggctcatact cttccatttt ggataatgag 420 ccattatgcc gctgtaaaaa gccaaaggta acctgaaaac ttgtgtttga tggatagcag 480 agaccaactc gaatccagtc attcgtatag aaaagcaatc ttgggtgctg gcccattcca 540 gtggatgggg tagcccttct ccagcatgat cacaggctgg tactgtgaga aagctgcctt 600 ctggttaatt cctcggagca ccatagggta gtctggatac tcatctcgtg tgatggtcat 660 agtcagattc ggagtgctcc atgtctgcac atagactgca caccactgca ttccatttgg 720 tcacgtttat acagcttgga tggcggatca ggtagttgtc cattcttccc acataagcat 780 ccttgtatcc cgtcacagag ccatcaatgt cgtggaatat ggagttctta tcaccatcta 840 gctcacagtc ttcaaaccag ggaccaggct ttccaaagaa tacattaaga gagaccgaag 900 gagatgctat ttctaggggt tatctgccag gaattcttca tgaggaagcc aacagcacat 960 tttttgaaag tgcacctggt gagatgaatg ggcccatcat agatctgaaa gcctctaatt 1020 ggaaatgtcc tgttccgagg cttcaggtct atccctccag tgcctacata cttgttctga 1080 ccaccctgaa agccgtaat 1099 // ID KA520201; SV 1; linear; mRNA; TSA; MAM; 338 BP. XX AC KA520201; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27241 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-338 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-338 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; 878a5f13bd7166cdcd0e019c7137eee4. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..338 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 338 BP; 68 A; 96 C; 106 G; 68 T; 0 other; aagctggcct gggcttcctg acggatggag gtaaatttgg ctgaagcttg gctctttgga 60 ggaggagggg gacgcagtgg gacaaccttc cctggaacat agccagatga acgatggctg 120 tttccattct gaggttgcag gaaagcaggg gagtgtcccc tggaattagt ggcatgcatg 180 atacactgtc acttagcgtt ggctaattca ggtgcctaca cagcagtcca aagagactga 240 gcagagctcc tggcgtcccc gggtccggat cttccctcca tggccaggga gcccgtccag 300 ccccggagcc cgctgccacc gccgaccccg ccgctgct 338 // ID KA520202; SV 1; linear; mRNA; TSA; MAM; 643 BP. XX AC KA520202; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27243 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-643 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-643 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; c22e84d3dc1cdf2d290effff3a472dc3. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..643 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 643 BP; 184 A; 150 C; 142 G; 167 T; 0 other; cagtaggtct tcttggtatc aggaaaagca actcgcattc ctgaggtcaa aggagaatga 60 agaataacag cagcactctc ataccgagca gcaagatcca cagatggtac tgtccctata 120 ctttggccat atataatcac attttcaggg cgaatgccat atcttgccaa gcagcttcta 180 tgtctgcata gaggttcttc tctgttggtt tcccagaact tgcaccatat ccagaataat 240 catatgagtc ccagtcctat gtaaaagctg ctcatctgac caagatcaac agcatttcca 300 tgtgagaaga gtaaagtata tttggcattg ggtgagcaac gtacaaacat gcaggcaatt 360 ctgttgcctt tactggttct agtcatgaaa cactcaatgg catctttttc tctagaagaa 420 tattgccagt ctgctcgttc tgataggtgt aaagtccaac ggcttccact ttcacaggtg 480 gcaaaaatgc taactttgaa gcaattttcc ctggacaagg tggacagcag aagaggcaac 540 atagctcact aaacgaaaga ttattcatct tagccaaggc gtcaggctga aagggccggg 600 agggaacctc tgccgccgcg ctgtccttta cgaggcgcga tcc 643 // ID KA520203; SV 1; linear; mRNA; TSA; MAM; 1043 BP. XX AC KA520203; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27244 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-1043 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-1043 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; aa016b748938d1ca0dc148b11af78275. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..1043 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 1043 BP; 211 A; 283 C; 256 G; 293 T; 0 other; ctctgttttc ttttaggaaa gtggttacct ctctcatctt ttctattccc agggtgaaaa 60 tatgggtaga aggccagcgc tccatcttca ctagcacgat atagttgaac agcatcaagt 120 atccgatgta cgccagagac ttcacaatgg gtgcattgta gaattcatag attttcctgc 180 ccagggggat taaccggtgt ctgctctgaa cttcttcttc atccttctac tccccgttgt 240 ttcttcccaa catcgccctc ttcatctttt tcctttgtgg gcttctctgg ttcttcttgc 300 tccttctctt ggaggtggat ttcctgggcc tgagtcatat agggcatgtc atctttgttc 360 ttgaactcca agctgagaat tgaaggagga agtagaattc ccagaattac tccacatgtc 420 tgtgagcaac atctggctgc acgtgtgcgc gatgaagtca cggtgcttgg cagctaccgc 480 aagctgcagg cacgtggcat tgctccagtt cttcagttca tacgtcagca gtttcatggc 540 cagctgctca ccctgcttgt aggactggtc caggagctcc acggccagct ggccaaagtc 600 ccagctcctg agagatgtca tctaccatgt cgttctcaga agcctcgtgg gccatggctt 660 tgcagagctt acaggccacc agggccttgg ccatggcctc ctcgccatgc tgccagaaga 720 acagggccat cttctccgct tcatcaggac ggcccacacc atcagttcat gaaaagggaa 780 agggaagtgg ttgatctcag ggtcatccaa gtccacctct tcttcacgct tcttggttgt 840 ctttcttcct cgcctcaagg gaacatcatc gtttcaaggc tttgggagag attgtggtag 900 agcgtccgaa gcgcttgcgc gtgtagttgc agcgataagc ccctcccatc aggtactcga 960 tcaccaggcc catatcgatc aggtgtagtc tgggggcagg ttcccaccaa gtggtacaat 1020 gtgtttgagg gcccatgtct cgt 1043 // ID KA520204; SV 1; linear; mRNA; TSA; MAM; 1322 BP. XX AC KA520204; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27245 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-1322 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-1322 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; 4dea8a74d5ba14cf8ad792b9afb4691f. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..1322 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 1322 BP; 349 A; 317 C; 317 G; 339 T; 0 other; ttcggccggt gcgccctcct ccgcccgcgg actccgcgct gcgcgccacc gcttacatgt 60 gtgccgcccg gatgccgccc ctggcgcaca tcttccgagg gacgttcgtc cactccacct 120 ggacctgccc catggaggtg atacgggacc acctccttgg tgtgagcgac agtggcaaag 180 taagcgggtg cggggtcagc atcccaacaa gaaaagctgg ccaaagaatg gtgcttcaag 240 ttgtgtgaaa taagagaact gagccaccag gctggtcgac acacacatcc atgcccctca 300 gtactccttt gccgggagta atatggacct cccacttttg gaatggttga ccaagtacac 360 atttcctaca gaacacaaat tccagagcat tgactttgct gaagaagtat ataccagagt 420 tgtttggaac aaccacagct tgttactttg gaacaattca cactgactca tcactgcttc 480 ttgcggaaat tacaggcatt tgtgggcaaa gtttgcatgg atttgaatga gactgttcca 540 gaatacaaag aaaccacgga ggaatcaatc aaggaaacag agagtccaga ggaatcatag 600 tgacaccacg ttttcccctt tcctgctctg agactttgtt gtgtgaactc ggaaacctcg 660 cgaaagcctg tgatttgcac attcagtcgt gatgaagtta aagctgtgaa aaacttatac 720 cctggttata aaaactacac agatgtatat gataaaaaca atcttctgac aaataagctg 780 ctacctttct gaagaagaac tggatgtatt cagggagcga ggagcgtcca tctcgcattg 840 tcccaattct aacttatctc aatgtgccag aggtcctgaa acatggagtg aagatagggc 900 tgggtacaga ttcatcatcc atgcttggat aaatgcaaaa agcctcaccc tcaatgaagt 960 cttcagacta gctactcttg gaggcagcca aggagattgg aaattttgaa gtgggtaagg 1020 aatttgatgc cctcctgatc aaccccaaag catctgactc tcccattgac ctgttttatg 1080 gagattttgt tggtgagatt tctgaggcct atatctagga ggaggtgtat gtgggcggaa 1140 agcaggtggt tcccttttcg agctcagtgt aaggccctcg gtgtctacaa gtcttccttg 1200 ggtaacacag ttctgtacct tctcgtgccc acatggagtt aggagtcaaa aaacagtacc 1260 ttgttcttgg ggggactatc tccctctgtg tctagttaca gtattcactt gacaaatctt 1320 tt 1322 // ID KA520205; SV 1; linear; mRNA; TSA; MAM; 347 BP. XX AC KA520205; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27246 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-347 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-347 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; 15db074008d741077c5d31b15b54226e. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..347 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 347 BP; 104 A; 65 C; 75 G; 103 T; 0 other; tctagtgctg gcaggtgttt tctgctctat ctccccaatc cctgccaaag gaacttggtt 60 accctagtgt ctaacccaca tgagtgggca aaggaatttg gatgacgtgc aagatctgcc 120 aatcagcaga agctgttctt agccttggaa agatcgtacg aaggatgtac attttgatgc 180 tgaacatcag ttttcattta gatttaggtc tcatgtgcag taaatgtaag tgtagcatca 240 gaagcaggaa gaatggccat atacaaccag cctgccaaat gttaaattta gccctgataa 300 tatattagga cctgaattta ttttctagta aaaatagaat gtgttaa 347 // ID KA520206; SV 1; linear; mRNA; TSA; MAM; 446 BP. XX AC KA520206; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27247 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-446 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-446 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; 6226699426a0b0d1aa1cc4e0e37bde08. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..446 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 446 BP; 124 A; 95 C; 80 G; 147 T; 0 other; ttttcaaatt ggtggactgt aaatttttga ggttttttcc tttgcaattt cagatctatt 60 tagccactgt aggtatgact ttggaccctg acactttaat gtctctcaag catgggacaa 120 atgttagaaa ccctggcatt tgtctcctgc atgttttcac tctcagcccc tccttccttc 180 ccctcctaca gtcctgagtg tgagagatca gacgtgaggg gttaatttgt aaatctggtc 240 caaactgagt gaaatgcaaa cgttgaacag gccaatcatg acactaaatg taaatcccaa 300 gatggtttcc acagtccaca ggattcaagt gacttgaacc atagatgata tatggtattg 360 atttacctgt tcacttccta ctcaaaagtc tgtcagaaag cactttctta aaattgaaaa 420 ctactttaca ttgtattaaa cttctg 446 // ID KA520207; SV 1; linear; mRNA; TSA; MAM; 3354 BP. XX AC KA520207; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27249 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-3354 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-3354 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; 531151ebbbca57d1d893db033bd66544. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..3354 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 3354 BP; 877 A; 914 C; 968 G; 595 T; 0 other; ccattccccg ggccgcctcc agtactccgg ctccaccagg cgccgccggc gaagcgcggg 60 gagcgcaggg gacatcggcc cagccgccgg cgtagtgtcg aaggcgccca agcgccggcc 120 agatccgcct tcaccctgac cccgactgcg ccagcttcgg ccgccaccag cttccagctg 180 tcatctcctt gtgagtggga ttggcatccc agctgcacct cttggcacaa gggctccagg 240 aaacacagac acgtgccagc agacagcctg ctttacccgg ctgatatggg aacagtacac 300 tgtgacccta cagaaggaat tgcagtatcc ggaggcagag acaaccccca ctttgaaaat 360 ggggagacat ccatcgtcat ttctgatgtg ctcccgggtg ggcccgccga cgggctgctt 420 caatggttaa tggcaccccc atggaagatg tgctccattc atttgctgtc cagcagctga 480 ggaaaagtgg gaagatcgct gccattgagg tccagctggc cccgctgcag gacagtcctc 540 ctatccacga agatgaccgg gctttcgagg tgatggacga gtttgatggc agaagcgccc 600 gcagcggcta cagcgaaagg agccggccca gcagccgcgg agggcgcagc cgcagctggg 660 aggagagccc agagaggggc cgtccccatg accgggcgcg cagccgggat cggggccgaa 720 gcctggagcg gggcctggac cacgacgacg actacgggcg atcccgggag cgcagccgtg 780 gccgcagcct cgagcggggc ctagaccacg atgattacag gcgagcccgg gagagcagcc 840 gcggccggag cattgacccg gtctacgatc gcgcctacac ccctgagggg gagtacggcc 900 acagggccca gcctgatgcc cggtatgggg catcccagag ccgcagccgt gagcacctcc 960 actcccgcag ccccagcccc gagccccggg ggcggccgga ctcggacaag cctatcgggg 1020 tccttctgat gaaaagcaaa gcaaatgaag gagtcagatc ttcataaagg aaatgaccag 1080 aaccggtcta gcaactaaag atggcaacct gcacgaagga gacataattc tcaagagaac 1140 atgtctttaa cggatgctcg aaaactgata gaaaagtcaa gagggaaact ccagctcgtg 1200 gtgctgaggg acagcaagca gacgctcatc aacatcccct cattaatgac agcgactcgg 1260 aaatagaggc aaccgatcgt tttctccaga ggagagacgg caacagtatt ccgattatga 1320 ttaccattcc tcaaatgaaa agctaaagga gagaccaaaa gcagatggtc caggatgggc 1380 gccacaccca ctccctttaa gtccactggg gatatggcgg ctgcgggcag cgcggagccc 1440 agcaaggagc ccaaatacca agaggaagcc ccagcccgag agctgttctt cgtccaagtc 1500 ctgaagattt agcaatatat ggcaggttca agaagggaga cagtgtgggc ctccggctgg 1560 ctggtggcaa tgacgttggg atatttgtgg ccggcattca agagggtacc tccgcggagc 1620 aagaaggtct tcaagaaggg gaccagattc tgaaggtatg agatcccagc cctgtgagga 1680 ctcgttcggg aggatgctgt tctctacctg ttagaaatcc ccaaaggtga aacggtgacc 1740 attttagctc agagccgagc tgatgttgtg gcagagggga ttcatttttt ataagaagcc 1800 actttgaatg tgagaaggaa actccacaga gcctggcctt caccagaggg gaggtcttcc 1860 gtgtggtgga tacactctat gatggcaaac tgggccactg gctggctgtg aggatcggga 1920 acgaactgga gaaaggctta atccccaaca aaagcagagg ttcagaatgc ccagagagac 1980 accaccgggg acagggcaga cttctggagg atgcgtggcc agagatcagg tgtgaagaag 2040 aacctacgga agagtcggga ggacctgacc gctgccgtga cagtcagcac caagttccca 2100 gcttacgaga gggttttgct tcgagaagct gcgtcttatt cggccccata gcagatatag 2160 ccctggagaa gttggcaaat gacttgcctg acctgttcca aactgctaag gatctgagaa 2220 atccaccggg gtggtgcggt taaataccgt gagacaaatt attgaacagg acaggaaagt 2280 cacctgaagg atgtaactcc taaggctgtg gacctgctga actatactca gtggttcccg 2340 attgtgatct ttttcaaccc agactctagg caaggtgtca aaactatgag acagaggttg 2400 aatccatcgt ccaacaaaag ttctcggaag ttatttgatc aagccaacaa gcttaaaaaa 2460 acttgtgcac atcttttcac agcagccaac gacagctggt ttggcagctt gaaagacacg 2520 attcagcatc agcaaggcga agcagtctgg gtctctgaag gaaagatagg cgacagatcc 2580 cgaagaccgc atgtcctact taaccgccat gggcgcggac tatctgagtt gtgacagccg 2640 cctcatcagt gactttgaag acaccgacgg tgaaggaggc gcctacactg acaatgagct 2700 ggatgagcca gctgaggagc cgctggtgtc ttccatcacc cgctcctcgg agccggtgca 2760 gcatgaggag ccagagccac gagctcagat gaggagggct gctagcagag atcaacttag 2820 ggacaatagc ccgcccccga cattcaagcc agagccgccc aaggaagaat cttttgactt 2880 ctccagatct tatgaataca agtcaaaccc ctcagccgct gctggtaacg aaattccagg 2940 ggcatctacc aaaggttgtc ctcctcctat tgcagcgaaa cccacttttg gacggcctgt 3000 actgaagccc tccactcccg tccctccccc agagagtgag gagaccggag agggcagtga 3060 ggagcagcac aatgctccca aatctgtcct gggcaaagta aaaatatttg agaagatgga 3120 tcacaaggca aagttacaga gaatgcaaga gctccaagaa gcacagaatg caaggatcat 3180 cctgatatct atgcagttcc aatcaaaaca cacaagctgg accctggccc accccagtac 3240 acaagttgcc acagaaaggc cctgccagac tttatcagga tcccagagga agctatggca 3300 gtgatgctga ggaggaggaa taccggcagc agctgtcaga acactcaagg cgcg 3354 // ID KA520208; SV 1; linear; mRNA; TSA; MAM; 375 BP. XX AC KA520208; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27250 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-375 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-375 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; 29f2e01f07c8993763d8481f832031f7. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..375 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 375 BP; 67 A; 113 C; 149 G; 46 T; 0 other; ctcgggaagt ggggggaggg aagcggtggg gggagcagcg gaggaggagg gggcggaggg 60 agtagtacag aaggccgcag cggctaaggc tgctcgctgc gctcgcccgt cgtcgcctca 120 cacctccacc ggccgcgagt ttggctgact ccgaggacga gcggggcacg cgcagctaag 180 cccgaggact gcaagggccc gcgaacggcg ctgtctgtcg cttcgctacc gccggggaag 240 ctgtgcagct cccaggaacg aggagcccca aacggtgatg caggcaggtc cgcgctccag 300 ccgactgacg cgttctctcc gccccgcgat ggaaagaggg agggggcggg gtctgtgcgt 360 cagcgaaaac ccctc 375 // ID KA520209; SV 1; linear; mRNA; TSA; MAM; 2078 BP. XX AC KA520209; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27251 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-2078 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-2078 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; 29c83397cf470baec13abdbc2c4b0618. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..2078 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 2078 BP; 637 A; 442 C; 393 G; 606 T; 0 other; gtggaaagtc tccctctgta catggctttt attatttaca taatacaata tagcatcaat 60 gctgaatagc atgattatgt gcaatacata aatatgtact atctgtacac atctgcagat 120 ctaactttag aactaagtaa aattgaaagc aaaactgaat gctttaagaa taaaagtaaa 180 aactaagact gaacactgca ataaatcaga agtagtgcct cgtgtacata cttaaaacta 240 tttacagatg aaaacaggca ttaccacgac actaatctaa caaaaaacac aagtttcata 300 catcacaaaa aaccttccat tataacacag aagtgatatt accagacaag catcagtgaa 360 gtatactgcc tcttctagtt gttattgtac aatgctgtag ataatgcagc ccatgcaata 420 cacccaagaa cactagagtc ctacacccaa gtacaattaa tataaagcag ccctctgcaa 480 gtggtgctgg ataccactaa gaagtctact gcagccatgt tggttatgat tttccatgca 540 gaagggtaca gttacattaa gaactgaagt ctttaaaaaa gctttaaaca ttctttcttg 600 aaccaaaaca ttcaacaaaa tatgcacatg aaaaattaac tcctagtgca gttttgttct 660 acacaacatt tttagcaatg agtaatgcag acattgtctg gtgcaggcca gcataataag 720 cttcaaagat agctcaagac cctgttggct tgatgcattt tactctttaa ccagttaaac 780 aatgtgtacc tttcacagag tgtcttattt gacagttttt agaacaccaa ttaaccaggc 840 ttacatatgg caccgaacac tggtttcatg gaaaggtctg attcttttta tagctttctt 900 cctgcttcca aggaacatgt ggaaattaac agggtgaagt ttaactatgg tagaagtaga 960 ctgccagtcc ttttctggtg taccatttct ttaaaaaaat acaggcacat aacactagcc 1020 aaagattata ccttgattac attcccaaag gcagatatgc tgcaaacatg cagataggta 1080 tttcagttat tttgtttggc acaaaggaac taaattttgt ccttattatc tgtgtatttc 1140 aatttcctgt gcagattttc atccaatttt attcagggga gggcatatac attttgtagg 1200 gctgtatcta tccaattctg cctgtaacaa acacccaaac atcctaaaat atcaattata 1260 agacagacaa gtgtaaagta aaactctgga gaacatcaaa ggaaaatggc catgcatctg 1320 ctctttaatg ttttcctacg gtatattaaa ataaaaacaa attatcagtc tcttcacaag 1380 tagtaattta tattctctga attttttcag ccacaacaac tggattctct tttctgattt 1440 ttgctgcagc ttctgctttg taatcatatg gacagttgtg cttgtcagag taacggtgaa 1500 gtccacaaaa caaatttcca catcggcagt caaaccctgt tctgcacatg aaacacctgt 1560 tcttctttgg tttgggcaac tcaggagctt tttcttcact ttgagaagta ctgggctgag 1620 aaaccgaagg actgggctga gtgacaactg attttcgggg tagttacttt gtcctctctt 1680 gaaatgctca tttctgtcat ttgctgagtt acaggcaagg cagccacagg catatttcct 1740 gccagcagca ccttcacagt tgtttaaact agcgtctgct ctttgtacag atgcagaatc 1800 tgaggtagga ctgttggaac cactagctgt cccccactat tctgctgcct ctgaagatgt 1860 tctttgtagc aaacagaaca cattccattt gtcctaggat ttccataaaa gccacatcct 1920 gtactacaca gcatgggccc tggggtctgg ttagtctcct gagccatttt tctgccgggc 1980 tcgcgcacga cgccggcgag gtggggaccg ggccgagccc tccgggaggg gcgagccgga 2040 agccctagag ccgccgccgc gggctggagc cgcagggg 2078 // ID KA520210; SV 1; linear; mRNA; TSA; MAM; 435 BP. XX AC KA520210; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27252 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-435 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-435 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; 2bf5e349f2e01b4ec4c77001afc7ae0a. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..435 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 435 BP; 126 A; 89 C; 109 G; 111 T; 0 other; ccagtggtac attacaacaa aatcaagtca cagacacaaa gcagcataaa tgaatgtatt 60 accaaaaagg tacaaaggca ttcaagcaac attttcttta ggtgaaattt tagctctctc 120 ttctccagtc attgtcttcc caggtggctc agtggtaaag aatccgcctg cactgcagga 180 gctgcaggag actagagttt gatccctggg tcagaaagat cccccagagg aggaaatggc 240 ctattcttgc tggaaaatcc catggacaga ggagcatgga gggctacagt ccatggggtc 300 tcagagtcgc tgagtgacag agcaccttca gtcactgact ttgcatgaaa agttctttgg 360 gatcagttag ttatctggtt gaaactgaga ctttgatttt gctgttgggc tctggaaaag 420 aataggagtc ctagg 435 // ID KA520211; SV 1; linear; mRNA; TSA; MAM; 480 BP. XX AC KA520211; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27254 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-480 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-480 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; 507972b6697531d28b31fe8d5623672e. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..480 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 480 BP; 73 A; 172 C; 141 G; 94 T; 0 other; acccacttct ttagctcctt ctgtcaagac tccatatcaa tctcagccac ttcattcttg 60 ccctgcagtg ctgtttctat caggttgtct tcgcttacat cttcaatgtc tgccagatca 120 ataggtggta aagggttcct ccagtactgg aaggtgttat actgccaaaa ttcttcactg 180 agctggcccc cagtctcccc gctggggctc tgcgcgcccc gccccatcgt cgccaccgcc 240 tctcgggggc cggacacccc ggggctccac ccccggcccg cggggccgca agggcgctca 300 cgccccgcgc cgccctggga gccggtatcc ccgtcgtcgc ggcgcttgct gggcgaaacc 360 gaaggctcag ccatagcccc cccgtcgatt ttacgctttc ggggcagctc ggggaagccg 420 aggggccgcc cgggatatga ggcccccggc gggcgagggc ggagcgcaca gcgcgggagg 480 // ID KA520212; SV 1; linear; mRNA; TSA; MAM; 665 BP. XX AC KA520212; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27255 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-665 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-665 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; e317f97acb70dd4b91dd8988e2a2e3c7. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..665 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 665 BP; 146 A; 198 C; 140 G; 181 T; 0 other; aaagcataaa aaaactccat tcatttcctt gacaagcata acctagcata gctatttccc 60 aggccagtct tcctagtcca gcaccaggta ccagaatatt tactttagaa ggatcccaaa 120 ttttttaaaa tttctttaat gattggttgg tagcaggcat ccctttctgc tttcccagtt 180 tcactccagt ctctcacaaa ctgtttcaat gtggatttta acttatccat gtcaaacgta 240 gatgctggca taatctttcc attcccatct tttattttca aacatatgta tgcaatcatt 300 cacaatggtc agtagtattt cttgattatg atcaacacat ttccggatct tgtccaagtg 360 aagaagaaac tgaggaagta gtttctgttg attagctggg agtgatcgaa actgtctttc 420 tgttcggtgc actcgctcat gcatactggt ggcatttatg atcttccaga agtgctcgcg 480 ctcgagcctc tcctcctctt cctccgtgct gcgcgcggcc gccgccgccg ccgccgccga 540 aactgccgcg gcggagcccc aacgcccggc ggagaactgc ccacctcctc gctcccgccg 600 cctcccccgc ggccgccgcc gcctcccccg cagccctccg gcagctgaga agcgggcggc 660 ggggg 665 // ID KA520213; SV 1; linear; mRNA; TSA; MAM; 611 BP. XX AC KA520213; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27256 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-611 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-611 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; 5302727b305415f34ae5a1dc9969f8d6. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..611 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 611 BP; 196 A; 101 C; 118 G; 196 T; 0 other; gcatggcata gtatatttct gaaaaagcga tagacatatt aagaaaatag acactatttc 60 taaattttgt taggaataag aaggcaccac tgatttgagg ttgtgtcctg tcattatgat 120 agttgattct gagttgttta tttcagcatt tgctattaaa cttttttctt gatgataatc 180 acttgagact gttattgtgg tttacggacc acaaacaaaa cacattcata gtagtatttc 240 atcatggata gatcattcac agtatatgtt gacaagacag attctttttc cacatactgc 300 agaacaacat tttttatatc ctcatagctt aattctatgg aaagttcatt cgccaaattt 360 tcaaagtggt acagcagagg acttccacgt attttccata ttgtatcaat ataatcaatt 420 acattgtgag ctgtgtctat gaagaaacag gtagcaatac agtcccaggt attctcctga 480 aaatctcctg ctgtcataga aaagttagaa ccgggaggaa gactgtgggg gtcaacatca 540 gggaaaaaga tgggtcgaat ctgatcagct gaccttcggt tattgctaaa ctgatgaatc 600 cagggataaa g 611 // ID KA520214; SV 1; linear; mRNA; TSA; MAM; 1394 BP. XX AC KA520214; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27257 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-1394 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-1394 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; 8cb3ca9980b9d46f38630d2b99cd2681. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..1394 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 1394 BP; 394 A; 303 C; 276 G; 421 T; 0 other; atatgagaaa caattacagc agtaacaagg acaaaacata caaaaatata ccattgcaaa 60 ttgttgattt attcaatatg attgctactc ctggtaatcc cattatttgc aggaggtggg 120 catcggtatg ggatggtaac aactattttt aaaaaattaa aaatagaaaa atataaagag 180 taaactgtat gtgaggtaaa tgttatatga taattgatat gatgcatgca acaaatacag 240 acacatatgc atacatatat agactcatcc acacacacac acacatcatt agattacata 300 tatactggat tgtgatctac atcttctttt ttcctttggg tcccattcat agaagtttga 360 aaatcattag tgtagtgaaa tgactcagtc tttgtgcgct atgctgtatc tgtgcacttc 420 ttggtgtgag aacagcatta gagtaaattt ctgtccatta tcatggatag ccacttactg 480 ttccatatgt taaagaaatc atgtgtgaca gaacaaacaa acaaaacaac agactgtcat 540 tgtaccaaag tcttggttat ggtacttgaa tagattcctt tgaattttcc agttcactcc 600 aggaaggttt cagtccattc caactttata ctgtcacttg cacaccctat tggacaatac 660 taaccctttt gttttgctag ttcttgtatt agatcttcat atacttgtga aaagaggtct 720 tcctcagatt ttgttccatc tagataaaca ttctccattt cttttttgtg ctttaggtac 780 atgggccaca cgtggccatc aaagtaccct ggggcgtctg gaggcttgta gacccttgta 840 cattcttcat acggaattgt cagaaaatag cgtctattcc atatagtgtc aaggggcagg 900 aaaccttcaa taattaagat gggaatttcc ttaatgtttt cctcatgtgt tgatgccaga 960 gactgtgttg ggttttccat ccagcaggag atggcggaca tcatttcctc catgttaagc 1020 gcttcgagca catatccatt ttcatctgtc tctatctcag actctggctg agataggaca 1080 ctgcagtttg gaaggtgttt ctgcaaattc ttagccagtg ttgtcttccc accatttgtc 1140 acaacaaatg ttttcataat tagctttgaa aatcacgtct tcctcgactg ctcccgagca 1200 aagtggcaca ggcgatcgct aagcgcgcgc ctgtcactaa cccgccgcaa cctccgaagc 1260 tcgttaacca agaggggcac agcctctttc cccgctcccc ttccgggtca gaggctgccc 1320 agggtagaga aggccaacct aggttccgta ccacctggag cgaacgcggc agcaggctct 1380 ggccggcgtt ggcg 1394 // ID KA520215; SV 1; linear; mRNA; TSA; MAM; 616 BP. XX AC KA520215; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27259 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-616 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-616 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; 49eb5106d2d007bef5aac5c1703c34ee. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..616 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 616 BP; 192 A; 114 C; 147 G; 163 T; 0 other; agaatccatt gacaacccat tgcatgaagc tgcaaaaaga ggccggtgag agagtgtttg 60 gacaaccgag tgggtgttaa cggtttggac aaagctggaa gcactgccct ctactgggct 120 tgtcacgggg gtcacaaaga tatgtttact caaccaaaca ttgaactgaa ccaacagaaa 180 cagctttgca tgctgctgcc tggaagggtt atgcagatat tgtacagttg cttctggaaa 240 aaggggtaag aaacaatgag aagaagctgg ccctggacat ggctactaat gctgcctgtg 300 catctctcct gaaaaagaag cagggaacag atgctaagca atgccgagga ctatcttgat 360 gatgaagact cagattaatt cccttccgga gctttgagat ctaaaacttc tgttgctttt 420 gtcatttcaa aaccttgtct ttgtcagaag agtgttgata actgtaaaaa aaaagaaaga 480 aaagtctata tgaatgtggc agtattgcac tgtgtttgaa taaaacttgc aagtgactag 540 ttctcacctt cagtttgcca ataagtgact ggatattttg ctgtataaag tacatgtttg 600 ctcaccagag tagaac 616 // ID KA520216; SV 1; linear; mRNA; TSA; MAM; 504 BP. XX AC KA520216; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27260 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-504 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-504 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; 699443030b1aa73582772bd07f96fa51. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..504 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 504 BP; 160 A; 108 C; 90 G; 146 T; 0 other; taactgtggg ctcttcacag aaaaagttag gatggagtct aacatggaaa ttcccaacat 60 cctgcagcct tccaacactc ttcatctcta tgatttctgt ttctagacat cctaggcatc 120 cctttttcca tcttcctgtc cagtacactc ttggatttgt gcacacagga cagtttttct 180 gcaggcaata cagggaagag ctcaagcaga gttttatgga tttccttgtc aaaacagaag 240 tgataggcag tcttgggagt gaaccaccag aaagagatat tttcagataa tgaggacaat 300 cacacacaca cacacacaaa tgtatttcac actatgcact aggtactgag ctagataatt 360 ccttttaaaa actcacccca tttaatatca ctgtaacttc tcgaggttgg taccattatt 420 actctttttg aaaagttaaa tagcccaagg tcacagaaag cttatcaaga tttaagaaaa 480 aaaggatgac tctaaagtgt gtgt 504 // ID KA520217; SV 1; linear; mRNA; TSA; MAM; 530 BP. XX AC KA520217; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27262 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-530 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-530 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; 76e7b33c1352be709a11519898789286. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..530 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 530 BP; 156 A; 103 C; 115 G; 156 T; 0 other; gatatttgct accttttcga tttctgatat ttctgtaatt gatttggggg gatgaggaga 60 caaaagaact gtttgtctta gaggattttc ctcccctttt agttctcttg ggcagagatt 120 tgttccttaa gggaccacta aagaaagttc tcctcctcat gccatttata ccaattactc 180 cagctcaccc ctgagtaata gagaccacct ctgctgaggc tgatcaggat ctatttatag 240 acaggaggaa agacatgaga ggttgcttca tagccaagaa gcatgtgtcc tccatgccct 300 ggttcctctg cagtagtcca tagtcatgat gattctagag caagctcagg caggagattg 360 gtggcagcaa gcctaagagg aaagacatca ctgtttctga gaatgtcagt cttacactct 420 catggttttt ctaagggtgt ttctggttag aaacagctaa aacatcaagt aatgaaagaa 480 aattggtaat gttaacctaa cataaaatgg gataaaatga caaaaacttc 530 // ID KA520218; SV 1; linear; mRNA; TSA; MAM; 430 BP. XX AC KA520218; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27263 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-430 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-430 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; ff6829a96bb3ba01abc6048779583e08. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..430 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 430 BP; 147 A; 89 C; 62 G; 132 T; 0 other; tactctgccc ccaatcccct ccccaaatct ggtgttaaag tggacaatat tacaatgtgc 60 tacaaaatcc aaaacaatct gtagtctcaa tttcctaaat atcccaaata tctgtttttg 120 ttctgccgat ataaactaag aatcatttcc tagtagtcag caagaggaag aaatgcatag 180 catgaacatt atttaactga aactttatta tttatgcctt ccccccaacc acaagcactc 240 tttagcctta aattacattg tgtgcacaca actacaacag tttgtatttg ctcaggaaca 300 tataatcaca ttaaaaataa gtaaatttct acttcacagt tcagttgcgg gggggaaata 360 agtatcttac attgggaaac tggtatatat aaatgaacag ctgtgtgttc atttaaactt 420 tgagaaaacc 430 // ID KA520219; SV 1; linear; mRNA; TSA; MAM; 605 BP. XX AC KA520219; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27264 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-605 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-605 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; 0f6f002c9d18075da25bd8a5c28ee1f2. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..605 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 605 BP; 236 A; 98 C; 99 G; 172 T; 0 other; ctgttcatat actgaagggg tggaatggca gatacagatg cagatgaaac tctacatttt 60 gtaaatggaa aaactgatgt tgaccattgt ttacaggaaa caaaggttaa agaaaaatgt 120 tgaagaatat ctactcctaa aaagagagaa gtgctataca acacaaaaat gagacctaga 180 gatatgaaaa agactcattt tactgtttta aaagaaaaac aaacaaataa gaggcaggga 240 gtctagacca attagaactg aggcagctgc aacgaaaaat ggaacacagt acaatgattt 300 gaggccttaa aggaaatgac taattaaaat gaaatttcac cagtcttcat gtctttaata 360 atacataaat gcccaaaata taaaaaatat gaagtctgga ttttcccctt aggtttataa 420 taaactgtca aacctctgct taatacagtt acttttataa gctttctgat cagcagagca 480 tgctatacaa gtacacgcat gctagaattt taccatgaga attattgttc tcatctcaaa 540 atgacctgcc tgttaaccat atttatacat atttcatttc cattataaga tacttaagac 600 ctttc 605 // ID KA520220; SV 1; linear; mRNA; TSA; MAM; 564 BP. XX AC KA520220; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27265 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-564 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-564 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; ec7138d72a171d6037ee835567c0beea. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..564 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 564 BP; 115 A; 172 C; 165 G; 112 T; 0 other; tcttttctgg tctgaggtag ccaacgatgg ccactttgag gatttcccca tagaagtcct 60 ctttgaaagt atgcatgata tgagtttcca tttttagtat tcttgtagta tgggttccat 120 cctatgctca ccaccatctt atggacatct ccatttccaa cactggccca accataataa 180 atgccagtag atatatcagc tggaagatta tctactactt gttcaggaaa gttagctatg 240 cccaactgct tggagccgcg gccgaagccc cgcaccactt ggccgcggca gaagtatggc 300 agctgcctca tgacgccgtc cgcttcaggt tcgggctgcg gccccgaccg cgagtccggc 360 ggggccgccg tggaggcggt gccctgaccc cccggaccag ccgggagaca cgtgagggag 420 ctcggccggc ccgccgggcg ggcgagcgga agggtgccca acggcagagc ggtgcggact 480 acacgccgcc gcgagagcct cacgcctgct gacccaacag aaggtaccgg acgactcaga 540 ggctgcgtcc gggccccggg aagc 564 // ID KA520221; SV 1; linear; mRNA; TSA; MAM; 302 BP. XX AC KA520221; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27266 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-302 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-302 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; a5a44637f8fec2a974df8f85ec3a9adf. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..302 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 302 BP; 68 A; 71 C; 73 G; 90 T; 0 other; atacctacag tttacacctt gggcacatga gatttttctt ctctttctct ctgctggttt 60 tgtttccgag tggaccaaca gcacgaccct cgaggagtct gtttccccga gcatggagct 120 gttgcgtgtt tgctccttcg ttgtgaagac ccagcagtca cagctgtgcc cctcactgag 180 aggtgagggt actcatcctg ggcccagggc tccagttgtt gtggaagcca catcatgtta 240 aacattaaac cggtttgggt tgaaaagaat gtcaataaaa taatacacat attttgtagg 300 tg 302 // ID KA520222; SV 1; linear; mRNA; TSA; MAM; 6020 BP. XX AC KA520222; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27267 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-6020 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-6020 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; 788d31cf5eafc8a914215186b553555b. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..6020 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 6020 BP; 1461 A; 1642 C; 1728 G; 1189 T; 0 other; ccagcgcgct gctcagagcc ggagggagcg cggggagcga gctagcgagc gctcggagcc 60 cgggccagca gagggggcgc ccagccgctg cctgcaccgc cgcctccgcc gcgctcgggg 120 gccccgggag gagcgagggc gagtcggaga gtccgggagc cgagcccggc gagacccaac 180 tgcgggaggg cgcccgcccc actcagccgc ctcctgcgcc ggagccgggg agcgccggcc 240 gaccgccccg cgggccgtag agctggaagc acaggtcccc ggagccccag ggatggtcta 300 ggagtgggtg cgaggctcgc tgctcagctc cctgccgggg ctcgccgcct cctgtcgatc 360 tcccagggct gcgagccgcg gcggccgggg gctgcgcgct cgggcggccc aggccgaaga 420 agttagttgt gcgctcagct tagagagcgg agcaagcgag cgatcgaagc agcagccaag 480 cgccggggcc atgggctggg ggagccgctg ctgctgcccg ggacggctgg acctgctctg 540 tgtactggcg ctgctcgggg gttgcctgct ccccgtgtgc cggacgcgcg tctacaccaa 600 ccactgggca gtcaaaatct ccggcggctt cccggaggcc aaccgcatag ccagcaagta 660 cggattcatc aacataggac agatcggatt actaccactt ctatcacagc aggacgatta 720 aaaggtcagt tctctcaagc agaggaaccc acagtttcat ttcaatggaa ccaaaggtga 780 cagcaagtgg taaaaaaacg gaccaagagg gattatgact tcagccgcgc ccagtccact 840 tacttcaatg atcccaagtg gccaagcatg tggtatatgc cacacatccc tgccagtcag 900 acatgaacat cgaaggagcc tggaagagag gctacacggg aaagaacatc gtggtcacta 960 tcctggacga cggcattgag aggacccatc cagatctgat gcaaaactat gatctgtgac 1020 gtgaatggga atgacctaga ccctatgccc cgttacgacg caagcaatga gaacaagcac 1080 ggtgctggag aagtggccgc cgcagcaaac aactctcact gtacagtcgg cattgctttc 1140 aacgccaaga tcggaggatg gagatgtcac agatatggtt gaagcaaaat ccgttagctt 1200 caatccccag catgtgcaca tttatagtgc aagctggggt ccagatgatg atggcaagac 1260 tgtggatgga ccagcgccac tcacccggca agccttcgag aatggtgtta gaatgggtcg 1320 gctcagtttt tgtctgggcg tcaggaaatg gtgggaggag caaagaccac tgctcctgtg 1380 acggctacac caacagcatc tatactatct ccatcagcag cacagctgaa agtggaaaga 1440 agccttggta cctggaagag tgttcatcta cactggccac aacctacagc agtggagagt 1500 cctatgataa gaaaataatc tgaggcagcg ttgcacggac aaccacacag ggacatcagc 1560 ctcagccccc atggctgcag gcatcatcgc actggcgctg gaagccaagt cagctggaga 1620 gacgtgcagc atgttattgt caggacttcc cgtgcaggac atttgaacgc taatgactgg 1680 aaaaccaatg ctgctggttt taaggtggat ttggactgat ggatgcagaa gccatggtga 1740 tggaggcgga gaagtggacc actgttcccc agcagcacgt gtgtgtggag agcacagacc 1800 gacaaatcaa gtaatgtttg ctgcaacagt gcagtgcgct ccatctacaa agcttcgggc 1860 tgctccgaca accccaacca tcacgtcaac tacctggagc atgtagtcgt gcgcatcacc 1920 atcacccacc ccaggagggg agacctggcc atctacctga cctcgccctc aggaaccagg 1980 tcccagcttt tggccaacag gcggtccatg gaaggattta aaaattggga attcatgacc 2040 attcattgct ggggagaacg agctgctggt gactggatcc tggaagttta tgacactccc 2100 tctcagctga ggaacttcaa gactccaggg aaaatggtct ctggtcctct atggcacctc 2160 tgtgcagcca tactcaccca ccaatgagtt ccctaaagtg gaacgcgtcc ggtatagccg 2220 agtcgaagac ccgaccgacg actacgggac ggaggattat gcaggccccc tgagtgcagt 2280 gaggtgggct gtgatgggcc aggacccgac cactgcaatg actgtttgca ctactactac 2340 aagctgaaaa ataacaccag aagctgccct cctggccact accacgctga taagaagcga 2400 tgcagaaagt gtgcccccaa ctgcgagtcc tgctttggaa gccatgggga ccagtgcctg 2460 tcctgtaaat atggatactt cctgaatgaa gaaaccaaca gctgtgtcac tcactgccct 2520 gatggatcat atcaggacac caagccggaa gtgcaatgaa aactgcaaga catgtactga 2580 atctgacaac tgtacagaat gcagggaggg gttaagcggt gtgccatcac ctgtgaggac 2640 ggctggtact tcaacggcca agactgccag ccctgccacc gctcctgtgc cgcctgtgct 2700 gtgggtgtat taactgcaca gggggctact tcatggagga gcggagatgc gtgcagagct 2760 gtagtatcag ctactacttt gaccactctt cagaaaatgg atacaaatcc tgcaaaaaat 2820 tgtttgacat gcaatggtcc agggatcaag aactgtacga gctgtcccag tgggtatctc 2880 ttagacttag gaatgtgtca gatgggggcc atctgcaagg acggagaata cactgggcgg 2940 aaggaggctt ctgtatgcta gtgaaaaaga acaatctgtg ccaacggaag gttcttcaac 3000 aactgtgctg caaaacatgt acattccaag gctgagctgc catcctagat ttctttgttc 3060 ctgtagactt atagattact gagcatggcc actgccagat ctgtgaagcc tcgtgtgccc 3120 agtgccgagg accaacccag gaagactgca caggctgccc tgtcacaagg gccgctgcat 3180 tttgaactgt tccttgggca aatttgaatt caggtcaccc atgtcacttc acctgccaag 3240 aatgccaagg agatgagcct tccaactgta cctcctgtgg agtagataag cagagcggtt 3300 cctgtactgg ggggagtgtc gagagagctg ccccccaggc tactaccctg aggagggcca 3360 cacctgccag ccctgcccag acaactgtga gctctgtcac agcacacacg tctgcacacg 3420 atgtgtgcgc ggctacttca tggtgccctc caatcacacc tgccagaagt tagaatgtgg 3480 acaaggtgac ccagactatg aagaatgtgt gtcttgtgaa gaagggtgtc tgggatgcag 3540 cctaggtgca catcatgcgc tacagggtac tacattgtta tacaacctgt cctgagaaga 3600 cctacaggga agaatttgaa tgcaaagcat gtgataccaa ctgtggcaac tgtgaccaga 3660 atgagtgtta ctggtgtgaa gagggcttct tcctcttggg aggacctgtg gccctggctt 3720 ctacggtgac ccagagatgg gagactgtga gccctgccac caagcctgcg aaacctgcac 3780 cggccttggc cacaatcagt gcagcagctg ccgagaaggc ctgcagctgc tgcgggggac 3840 atgtgtgcgt cacgaccaga cccaggagga aggcagcttc cggaatggta tgtgcccccc 3900 agacaccagt catgccattc ttcttgtaac acctgccatg gatcggcaac cctgtgcact 3960 tcatgtccaa aagtggctca gacctgcgtt ccatcctgtc cccaaggcac gtggccctcg 4020 gtgaggagcg gcagctgcga gaattgccca gaggcttctt gctccgaagt caatctttgc 4080 caaaagtgcc aaacgcggcc agaccgcccc ctcttcctcc accaaggcag gtgctccacc 4140 aggtgccctg aggagatgac gatacctgta agcactgcag ctcttcctgc agaacctgtg 4200 aaggaaatgc caccaactgt cagtcctgcg aaagaggcct tgtcctagac cagggggtgt 4260 gccggaaaac ctgccccgag aggcatgtgg ccatgggagg ggtgtgcaag cgctgcccag 4320 agatgtgtca ggactgcatc catgagaaaa catgcaaaga gttcttcctg cacaaggatg 4380 aatgccacca gtcctgtcct agccacttct atgcagacag gcgccactgt gtcccctgcc 4440 atgaagactg tctggagtgc agtggtccct gggcggatga ctgtgacctc tgtgccgagg 4500 catccttggt tctctacgat gggcagtgtt tagatgagtg tccagaagga acttacttgg 4560 aaaaagagac taaggtctgc aaagcctgcc gcacctgctc gtcctcgggg gcctgcacga 4620 cgtgccagga aggcctgagg gtgaacaacc acgggggctg tgtacctcac gctgcgccgc 4680 catggagtac tgggacaagg aggcacaggc atgcgaggcc tgtcatgcca agtgcctcca 4740 ctgcacgggg ccctcagagt tccagtgtca gacctgcctg cgcgacagcc tcctgctcaa 4800 ctgcaggact gccctgaagg ctactacgct gatgaggaca gccaccggtg tggcccctgc 4860 cacagctctt gtaggacatg tgaaggacaa cacagcatgc aatgcctctc ctgccagcca 4920 ggctggttcc agctgggaca ggagtgcctg acccagtgca gagaaggaaa gctccacagg 4980 acagtgcaag aggtgccaca ggagctgcaa ggcctgccag ggcccgcagc ccacagactg 5040 cctgtcctgc gatccattct tctttctgct ccgctccaaa ggacagtgcc atcgcacctg 5100 tccagagcat cactacgtgg agcaaagcac gcagacctgt gagagatgcc acccgacctg 5160 tgataaatgc aaagtgaact gcttatcctg tgtgtggagt taccacctgg tgggaggact 5220 ctgtacctcg gactgtcttg tgggggagta cagagtggga gaggggcaaa ctgtgaaaag 5280 tgccacgaga gctgcataga atgcaaggga cctggcacca ggaactgtac cgtgtgtcct 5340 gccaacctgg tgctgcacat ggacgacagc cgctgcctgc gttgctgcaa tgcctccgat 5400 cccaccgatg cccaggactg ctgtgactgc caggacaccg aagttcgagc aagtgaggtg 5460 gagcctacag gtgtgcgttc caagacagcc ctgttgatca cttcctccat tatgctggtg 5520 cttctgctcg gggcagctgt gattgtctgg aggaaatctc ggagcagagc caagtcaaca 5580 gaaaaaggtg gctatgcaaa gctggctgaa cctagcgtgt cctactcctc ctataagagc 5640 agccatcgtg agagctttga agaggatcaa gtgattgagt acagagaccg ggactatgat 5700 gaggatgatg atgatgacat tgtctacatg ggccaagatg gcactgtcta ccggaaattt 5760 aaatatgggc tgttggatga tgacaatgaa gatgacctgg aatatgatga tgagagctac 5820 tcctaccagt aaacagaggc catgcccacc ccaccacatt gcactcatgg gcatgcatgt 5880 gagcattaca aagttggatt ttatcccaac ataccaggct gacgtgaggg tgcttgtctt 5940 cttaaccaag agtccaacta gagtatatga ggttgctgaa atattttgtt cttcttttgg 6000 atagttcaac tcaattaacc 6020 // ID KA520223; SV 1; linear; mRNA; TSA; MAM; 788 BP. XX AC KA520223; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27268 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-788 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-788 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; 7b57d8c98e2fbe784c64ead89578832e. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..788 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 788 BP; 219 A; 165 C; 146 G; 258 T; 0 other; agaacttaaa tggaaaaaga aataaaccta caacaagcct accttttata actgggtgtt 60 tagtgctaaa cagccagaac cacagagaca gtattgtatg accaaagcat ctgatgccaa 120 aatttgacgt taaagtaatg atttgatttc ctgccctgtt tttgaaggtc cattttgttt 180 tttttttttt ttttttcctt ttgcatttac ttgcttgctt ccctctttga gatgcctaaa 240 aatccctttc aaaaacatca caagagcaga catagatcaa aatgaaacag aaagctcttg 300 catccatcat ttttcatgct tgagtccact gttggcggaa atggcagaaa actggaccta 360 agggcattaa gaacatccca cagagttgtg ttcagtgtca tttgtcttgg tttttcacag 420 ctggccattg atactttcca cacataattt acttcatgca ttatgtgctg gttttggcat 480 tatgcccact tgataagtct gctccactgg tttcatcaga tagacttgct gctactggct 540 tttccatggt agattcggtt attttacata cagctggtca aatgggattg ctctgcatag 600 tcaaattggt gatggacaga atgcaaagat tcacagaata gctgagactg atccagctcc 660 cccccaatcc agagtgttca ctcgtaaacc ctgcacatgc tcttggtgct attcagccat 720 taccccatag cattttttta aggccatcag aaattccatg tgttgtagtg gaaagtgttt 780 tcaatatg 788 // ID KA520224; SV 1; linear; mRNA; TSA; MAM; 1014 BP. XX AC KA520224; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27269 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-1014 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-1014 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; 30e6a6a1065aa951161253b7b97cbdf8. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..1014 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 1014 BP; 313 A; 207 C; 197 G; 297 T; 0 other; aactggaaat ggaatatggg cagcatgatt gtaccctcct ggttctgttc tttccccact 60 cctctgtctc tctataacca tgctgataca cctgtccact gaatgtcaat gagaccatct 120 gttttcctgg aaatatattc actggtttcc tatgagtccc caaacacatc ctggaatcta 180 gcagactgac gtatgtgaat actctgaaat gaggaagctt gatagatctt attataactc 240 ttgagtttct ctatttagga gagcagagac taatatcaag tttcttcatg tttcatatca 300 aagctccatt ggtgacctca tttgctttca gagtgaccgg ccatcttaca ggctttaggc 360 ttcggacagc ctcacttcca agataagagg aggaatgata taggttatcc tgggaaatgg 420 atgctaacta aggtccccgt ccaagaagca agctagtaaa aaggcctaac ttgaaatttt 480 gtattccaag acatcaaagt taatgtttaa cccaaggtaa ataatgagta caaagtctaa 540 tgaccctttt aatagcactg cagtgatact aagtcatata atgattcata tataactagg 600 ggatcaactg attttgttga gtaatttttc ctcttcgtaa cactgcaggc ccttctgacc 660 tgaagaaagc aagttagtcc tgggtctggc atgtagagtc ttaacattta aagtcacaaa 720 agtgagagcc taaagcaagg tcaagtagat ggtgaaacca gatctgcctg cagaagaatc 780 catttaactg aacctgccca tagtatttga ggcacaaagt tgctatgaag ggaaaaataa 840 aaatgatgtc tgtgttctta gacaaataac catcaatctg acagtcaaaa ccattggggt 900 gcaccaacat gtgttccatt tctcactgac catgcaggca cacattgtgg aaatactggt 960 ttaactacta gtggttactg cctcgtttat ctacagaata ttattaacta gaac 1014 // ID KA520225; SV 1; linear; mRNA; TSA; MAM; 505 BP. XX AC KA520225; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27271 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-505 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-505 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; 4ed9bee330906d26b8c415b276c808f4. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..505 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 505 BP; 186 A; 84 C; 109 G; 126 T; 0 other; ttttatggaa cttcttgaat cggttgatat gatgacgcaa aatctaccat accggaaatt 60 caaacctgat gtacctcttc attaccatgc caaagaatgc ttatgctata cgtggtattc 120 ttgaagtaaa cattcgcccc cacttacgga tgtggtcctg gaagcatatt agagaacata 180 ggcaaaaaat gaagcaatat aaagaactgt ataaaaaaaa gctaacaagt aagaagccat 240 ctggtgaact tctcaactct ttggagggaa aagactttgg atgtatttaa tataactata 300 gcaagacaac aggcggaagt tgaggaaagc tggatacagg gagggcaata aaggatggtt 360 tagctggatg tggaactggt cagaatcgca tagtaaacaa caactagata ttaaacctgg 420 aagaagaaat attgacacct aaagaaaaaa gtttgctgta tgaagcaatt ggctatagtg 480 aaacagcagt tgatccaacc ttgcc 505 // ID KA520226; SV 1; linear; mRNA; TSA; MAM; 453 BP. XX AC KA520226; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27272 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-453 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-453 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; ae49e40c489dd98b1f18c931a8fd0bf5. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..453 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 453 BP; 125 A; 101 C; 77 G; 150 T; 0 other; ttggagatct ttaatggcag cagtcattgt atcattttca aagtcaccta gccaatatat 60 ttcacactgt gttgtaatga ctaaggcagg agcatcattt cttgtcatat cagcgacaaa 120 cacaatttca ggatttttaa tagtgatgtt catttcccac ttttctgatt gctgtttagg 180 tatctttagc aggccacgaa cactggtttc tacggcagtg cctgtagtgt aggcctcaag 240 aaagacattt gcaactgtca gcagaaattc cacacttgca caaatataca tttcttgaag 300 gactatatca gccacccaac catctcggat cgtcctatac cttacatcca tcatgtcctt 360 tttgtcaaac ccaactgtca gtcctatcat tctagagttg ccttcttgat atgaggcctt 420 ttgtcatcta aaatacagtt ttttaatgag aag 453 // ID KA520227; SV 1; linear; mRNA; TSA; MAM; 946 BP. XX AC KA520227; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27273 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-946 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-946 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; f719dda8d33c3b8ddaa10a4755ba48e7. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..946 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 946 BP; 320 A; 172 C; 171 G; 283 T; 0 other; atgaggagag tttaagtatg gattatatgc gaactaaaga caatgatcat ttcaatgcaa 60 tgaccagcct aagcagcaaa cacttcttca ttcttcttag ctaaccactc tactgctgat 120 aaaatccctt taacaaaagt gggacgacga ctgtacactg taagacacag ggagtctgga 180 gttgaaagat caattgtttg tcagattgat gcagtggaag gaagtaagaa ggtaacaatt 240 cgctctccag tgcagaaaat catttttcaa taccactttc tgtttatgga ggagacacgt 300 tattgggaac ggcctcacct ggaagtgaat ttaacatacc attagcatct taccgtactt 360 tctctgaagc cagaagatgc agactatcag atgtgtgaag gaattgactt tgaagaaatt 420 ataaaacaag atggtacttc tttcaagaaa aaatgtagac ctatacaccc ttccaggaag 480 ccatttatca ttaatatagt cccagaaaaa gataatttga catatatgtc agtgtattca 540 gaagaccgtt gggacttacc atacataata catttgtggc cacctattct acattacata 600 gagtgaacat agagttttta ctctccatga aggccgttca gcccagcttt gtactgtaca 660 gttggataaa gccaggctac atttaaaatt acttgactat cttaatcgtg aatatcatat 720 aaaacctaat caacaagata ttagtttcat cagttttact tgtgttacag aaatagaaaa 780 gactgattta gatattgctg tccatgtgac ttataatact ggccagacta ttatggcatt 840 tcatagtcct tattggatgg ttaataaaac gttacagtat aaagcagatg gaattcatcg 900 aaagcatcca cctaattata aaaagccagt tctcttttca tttcag 946 // ID KA520228; SV 1; linear; mRNA; TSA; MAM; 627 BP. XX AC KA520228; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27274 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-627 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-627 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; d0c9c4d8a552300b7c0c21e0dd20a5df. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..627 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 627 BP; 214 A; 112 C; 126 G; 175 T; 0 other; gttagcagag caagaaattg tgttggcgtt acaagatgtt gggatttctc ttgtcaacaa 60 ttatacaaag caagaagtag cctatattgg cattacaaga tgtggtttgg gagacaaagc 120 ccaggaagaa ggcaagatgg aagccaatga gtgtaaagca cactgagaag ttagagaagg 180 aatttaagga atattctgaa tcttcaccat cagaagataa ggttattgag ttggacacca 240 acattctggc ttcacacctg gtgcttctaa catgaaaatt ctgcagccac atgtaatagc 300 tataagaaga aattatcttc cagcattaaa agtagaatat agcacatctg cagtcatcgt 360 ttagaattca aatttataga atacagaaac caaatacatg gtgctatatt tccatttgtg 420 ttttatccca ttaaaccacc caagtccgtc accttggatt cagcaaaccc tttactgatg 480 tcagtattgt catgagatct gcaggacatt cacagatatc acgtattaat caaagtgttg 540 atccaagaaa tggatctcag gttagatctt ggatttgtct atgctggatc agaacttatg 600 acaccagctg aagtcactga aaaaact 627 // ID KA520229; SV 1; linear; mRNA; TSA; MAM; 1284 BP. XX AC KA520229; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27275 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-1284 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-1284 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; 42060a6be2b1f515183aee23fbb53b0f. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..1284 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 1284 BP; 416 A; 224 C; 307 G; 337 T; 0 other; gtagattcat cacaagtcag tctctatgaa tactttcata tatctcctat caagtttaag 60 tgtttcactg agttcaggcg gtgaagaacc gaaagattca gaacagcatg aaggactgat 120 ggcaattcgt tctttacaac ttttgctgaa gagtattggt gccactctca cagatgtaca 180 agatgtagtt tttaacattt tttgaactca attatcagtt ccatacaaca gctgaactac 240 agtctgaagt aataagacac tattcaaagc agtaaacaga tgtatgtact cattcttgga 300 cttgatgttt tgggaaatcc ctttggcttg ataagagaat tttctgaagg tgtagaagca 360 tttttttatg aaccttacca gcatccaggg tcctgaagag tttgtggaag gaatggcact 420 aggactgaaa gcactagttg gtggagctgt tggactagct ggtgctgcct ccaaaatcac 480 cagtgctatg gctaaagggg tggcagctat gactatggat gaagactacc aacagaagag 540 aagagaagcc atgaataagc aaccagctgg tcttagggaa ggcatcactc gcggaggaaa 600 aggcctagtt tcttgtaagt ggcataacag gaattgttac aaaaccaatc aaagcagaaa 660 gaaggagcaa ctggtttctt taaaggtgtt gggaaaggtt tagttggagc agtgacaagg 720 ccaactggag gcatcataga catggctagc agtacatttc agggaataaa aagagcagag 780 acctctgatg aagtggagag tctgcgaccc cctagattct ttaatgaaga tggagttatc 840 agaccttaca ggttgaggga tggtactgga aatcaaatgt tacaggtggg tggaaaatgg 900 aagatttgca aaatacaagt attttaccca tgtcatgatc aataagacag acatgttaat 960 gattaccaga agtgttgttt gtaacaaaag gaacatttgg acagcttact tgtgagtggc 1020 agtatagttt tgatgagttt accaaagagc cattcattgt tcatgagaga agactgcgca 1080 tcgaagcaaa ggaggtgaag tctgtattcc atgccaaaga gtttggaaaa atagttaact 1140 tcagaacccc agaggatgca agggcctcag aaagctagaa gaagcaagag aaccttcccc 1200 gaacctctga cagagactac tgcctgaaga tgtacagcaa taaatcatta cagtttctac 1260 cttgtacctt ccaaaacctg tttg 1284 // ID KA520230; SV 1; linear; mRNA; TSA; MAM; 1074 BP. XX AC KA520230; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27276 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-1074 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-1074 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; c707fdd0ae895a7bb154f5cb896bc935. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..1074 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 1074 BP; 215 A; 325 C; 312 G; 222 T; 0 other; ttccgtcttt cagatcgctg gccaccaaca tccaccatca gatgatgttt tccaggtcaa 60 acggatactc aatgatgcca gtggtgggca ctcggacacg gagcacatcc tgctgtgtgg 120 gcacgaacgc tggcatggcg atccggtcaa tgtccgtcag gtaatggcag agtctgacag 180 ttggtactcc cgcctccgat cgtagcactc ctggattcca ggatcctgcc acagctgctt 240 gatggcctcc acctggtccc tggagagcgt ggacaccttg tctacttcca cttctctgat 300 tagctgggca ttttcctttt ctgctcacac acgtactgta tcttcagggt gtccatggct 360 ctgatcatgg cttgcatagc agtgaatatg ttttggtaaa ccagcttcgt gaaccccttt 420 ctgtcttcgt cgctgtaacc agacccatgg atgattctca tctgcttgat aaaggtgctt 480 ttgccacttt caccagttcc agcagcaact tgagctcgcg gcgagcgtcc ttcttgtccc 540 ggcgaagctg ccgctcgatc tcggcgctga tgcgctgcga ctccttctcc tccgctgaca 600 ggcagcagca ggcggccatg gtacgcgcag cccccgacag gccacgaagt ctcgagcgcc 660 cggacgctcc gccggcagac ccgcgacggc accggagttc ggagggaaaa gaccggggcc 720 gactcgagtt tcggagtaag aggccgggac cgcctgggtt cagaacgctc aagtgcaccg 780 cagatcccaa ctaacctagc cccacgccgg ggtaggtgga aggcgagccg agggagagcg 840 gcccccgaaa accagcacgc cccttggcac aggagctcga cagtctggga gcgcagattg 900 ctcgccaaaa gttggggcgt cggggaacgg gatctcctgg actcggggat gtcccaggca 960 ggcggcaggc aaggcgtggg ttggaggcag aagtcctagc tggccctctc ctgcaaagtt 1020 ctgaaaacct cagcagtgac cgcagcctaa gagactggaa aatttcccgg aggc 1074 // ID KA520231; SV 1; linear; mRNA; TSA; MAM; 325 BP. XX AC KA520231; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27277 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-325 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-325 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; d79567992dda4436b8cb21e221d4f4b1. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..325 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 325 BP; 107 A; 51 C; 76 G; 91 T; 0 other; tccaatttta cccatagatg ttttcgtaac gtgtacatgt tgtttactat tgggttggaa 60 tcatacaggg aaatggagga tacatgggaa gggaggtaag aagaaaatta atacttgagc 120 acctactatg tgctaggtgt gtatgcatac tttgaacaga tgattctaga ggcaagaggg 180 ttactgaaga gcattggtag ttgagacagc aagaaattgt tatcctgtga gaaaaacaaa 240 tggcaacttt atactaagta tctacgaagc agcaggtgcc tggctccaaa aatctctagc 300 taatcgtata caactaagcc atttc 325 // ID KA520232; SV 1; linear; mRNA; TSA; MAM; 1170 BP. XX AC KA520232; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27278 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-1170 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-1170 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; af655d328d1480bdf95e3df58e3ddeba. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..1170 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 1170 BP; 364 A; 242 C; 202 G; 362 T; 0 other; tttcagatat gaggcacaaa cttctgaatt taagctctgt aaggcatagt acaaacctcc 60 aatttacaaa caagggattc tctgtgggtt ggaactgcca tgtcacgcaa aaagggcaaa 120 atcatctgta aactggtaca ctgcaatgtg ttaagtgagt catgagacgg ctgcttgcct 180 tggtctgcgg aagaaaggtt tctgtgtttt tgtttttgaa taagacatgc ccaagtcacc 240 acacaacttg ccacaggcct ccgttactga gagcatcaac aagaggggtc cagcggcaca 300 cgcttagaac gcttgcaatc acaataataa tataaagcat gagtaaactt tgttttcata 360 caaaactgaa aagaatccct tcccacccca gcccgttcag taaaacccca aagaaacaaa 420 aaagaaaatc ctttagcttc agttgactag tgtggataca atcagtttct atgcatcact 480 gtaaccaggg tgatcaattt tttcccttct caagaaaagg gatcttatca tgcaccctaa 540 gatgaacagt gaaaccacaa acctcaattc tgcatagcaa ttccatccca atttcatgaa 600 gacaaatata acaatctttc cctgttttgc tcagcttctt ggagctctga gatcaggttt 660 aattgactac atctactata gctctattaa atagaatatc ctgattccct aaaactgtta 720 acacttatga tcttgtgatg aggttttctc tatacacact gtaggccttc aaatgttgtc 780 cttttttttt tgctgcacca aatttaagat cgccctttca ggcaagcagt ggttgctagc 840 tattaaaaca tttccttagt ggatcacaat agcttctaaa actgcctttc taataaaggc 900 catcagagag gtaatactaa actgtgcatt tgccaaataa gaatatgaat tgtataaaag 960 ctcatattcc aatcctaggt caaatggcaa aagttctaca aagttggttt ccatgtttgt 1020 ataaaagctc caactgattt tatgtatttt gctatgaaat tacctttggg tcttataatc 1080 agtatacctc tacttaggaa tgtgcaaatg attttatata gcacgatgct agtaccgctc 1140 tgtacgatag taaggttttt ttttttcttt 1170 // ID KA520233; SV 1; linear; mRNA; TSA; MAM; 570 BP. XX AC KA520233; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27279 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-570 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-570 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; 4b6cb6092fe7a39e96709a6b2256cf03. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..570 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 570 BP; 188 A; 109 C; 103 G; 170 T; 0 other; acagaagatc atcaatacat gtgctgtttt ttttgcattg gttgaaaaat tgcacatata 60 gaattctaga tttctctcct actacgttca gttacataga tacacattct atagaacaga 120 gaggttactt aagagtttcg gtccacaaat cttccttaag ttcaactcaa tcagtcacca 180 gtttaagatc ctaaagatgg taaactagca gtaacttcag agtctgcaaa ttaaaggtgt 240 cagagtaata ctattgacca gtgtttttgg cagacctact tgaccttaaa gaacagagag 300 agagtaaact ggcttcaaat gaaaagataa aagcagattt catggggtat cacacaagac 360 agcttttcca cattgctgat tcagacgctc aacatggaat gtggacacta aacaacgtga 420 tttaagggca aataaaagga tggactgtaa gaatcaaatc tacagtgacc aacagtttgg 480 caactggtgt ttcaggttca ttctcagcca aacattttag gcttcacagt cttactctct 540 cacattttaa gattctggcc ttcatctttt 570 // ID KA520234; SV 1; linear; mRNA; TSA; MAM; 607 BP. XX AC KA520234; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27280 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-607 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-607 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; 25c5c7101d0fdca4f763e72d89a3d081. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..607 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 607 BP; 244 A; 93 C; 122 G; 148 T; 0 other; aaaaaaaaat taacagcaac ctatgagaag gatctgggca gcagccattg ggataatgta 60 gtgtctgttg gcatatattt ttggcatctg caatttgaag aaaagagggt ggagaaaaaa 120 atggcaagaa acagaggaag aacaatggca catgatattt caaaaggaag aacttctgtg 180 tgtcttggcc cttgctttac tgacttctat atggtttgct gagcaaccag ttatggctga 240 aggtaaactt aaaaaaaaaa aacaacaaaa aacaagacac ttaaccatta aacgggcatc 300 cactgtccca gcccaaagtg aggcaagaca atatatttat ataaaaagac ctctatatgt 360 gaatacattt aaaaccacag tattaatact tataatcctt cagcaaaaac cacaaactgt 420 taaattaagc tgatgtcaat ggcttaaatt gaatgacatt gtcctgactc tatcatttga 480 gagaaaaact tgaccaagaa tggaactacg ataaagacca ttgtaatgtg ggaaaaatca 540 agaggaagga atgggttggg aaaaggaaaa tcaacttcat tttgcttaat agaaaagaaa 600 gagagag 607 // ID KA520235; SV 1; linear; mRNA; TSA; MAM; 1234 BP. XX AC KA520235; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27282 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-1234 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-1234 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; 08973ee8a559442fdd17d26cb8630168. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..1234 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 1234 BP; 284 A; 312 C; 292 G; 346 T; 0 other; ctcacacaga gtccaggacg gcaataaatt agtattatgc aaattgtttt ccacagaaat 60 acagtccctc ttgtttagct tcactagccc accagggaag ggaagggcgg tgtcgaggag 120 gcacaattag accagattgt actccttcag gttcaactgg aggatggtgt ccttgacagc 180 agcaaacaca aagcggatgt tctcggtgtc tgtggcgcat gtgaagtgcg agtagatgat 240 tttgtcactg tctgggttca ggtccacgaa catcttcagg atgaattctc gagctgcctg 300 ggcatctcgc tggggcccag tattccggga aatagtcaac taggtgggaa tacataattt 360 tctcctctag aagatctttc ttgtttaaga acagaataac tgaggagttc tggaaccagg 420 gatacgtgat aattgttcta aagagtgctt tgctttcctc cattcggttt tgtctgactc 480 cacgagaact tgatcatatt cactaagtgc tactagaaac atgatagagg tgacgttttc 540 aaagcagtgt atccattttc ttctctctga cctctggccc cctacatcga ccattaaatg 600 acactttgta agtcgaaggg gtattcgatg atccctgtgg tggggactcg aactctgagc 660 acatcttgtt gcgtaggcag gtaggcaggg tcggcaacgc ggtccaagtc attaagatag 720 tatggtagag tcagataact gatattctcg tcgtctgtca tagcattcct ggattccagg 780 atcattccat aaactcttta ttgcatctac atatggattc tcaaatgcag ataccttctc 840 cacatcaact tctcgaacta actgtgcatg agcttgtgct cgtacttgta ggggatcttg 900 agcgtgtcca tggctctgat catagcctgc atggccgtga agatgttctg atacaccagc 960 ttggtgaagc cccttttgtc ttcatcagag tagcccgacc catggatgat tctcatctgc 1020 ttgataaatg tactcttgcc actctctcct gtcccagcag cagcttgagc tcccgccggg 1080 cgtccctctt gtccctgcgg agctgccgct caatctcgtc gttgatccgc cgggcttcct 1140 tggcctcctc gctcaggcag cacgccatga tggactccag agtcattctt tcaaagtgcc 1200 tcgctgcagc cccgccggca cccactgctc acac 1234 // ID KA520236; SV 1; linear; mRNA; TSA; MAM; 501 BP. XX AC KA520236; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27283 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-501 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-501 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; f733594d78b0aaa30df2056f7953921d. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..501 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 501 BP; 77 A; 162 C; 178 G; 84 T; 0 other; gccgtggggc gggaggcagc gcggaaacgc ggcatctagg gggcgaccta gctggggccc 60 ggggcgctga gtctgctggc ggatccgccc ctcctgccca cgctgagcgg caggagccgt 120 ctggcggtgg gcgcccagaa gcgggtagcg ccccggggcc ccgaggcggg gtgccggcat 180 agtgtccgca gcctgcgtcc ccctcggccg cgctcgggcc atgatcgact cggtgaagct 240 gcgccgcgac agcgcggccg acttcttctc gcactatgag tacctgtgcg cgctgcagga 300 ctccgtgcca ctgcccgcag tgcgcgcctg tctgcgggag ggcgtgttgg acttcaacgc 360 cgaccgcctc cgcgtggctg actgggcgcc gcttctgagc accctcaaga atgataaaga 420 tctgcccttg atttgcatca agagcttctt ccagccgtgg cttggcgaaa caggacagga 480 ataaagttta cagaagtcgt g 501 // ID KA520237; SV 1; linear; mRNA; TSA; MAM; 423 BP. XX AC KA520237; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27284 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-423 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-423 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; be4fccf6e83f8d94895661bdd0c9829f. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..423 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 423 BP; 121 A; 88 C; 110 G; 104 T; 0 other; ttaacgatgt tgacaaagga ataaatcagc cactctggtg cacctgtctc ttgcgaattg 60 tccgattgga gatggaggtt tagaaatgtc aaggtataaa gaactctgtc actcttaaga 120 caatcaactt cacggggtgt aatctgacat ggcagggagc agatcacatg gccaagatct 180 taaaggacca tcagaaggca tgaagaaacc tgggctgaga gtcttcgtta caggagaccc 240 gatcttgact gcatggctgg tttgaggcgc atcactctga actgcaacac gctcattggg 300 gaccttggtg caagtggttt tgccgaatct cttagtgagg atttatggct tagaggacct 360 gcagcagtgt ggcctcacca atgaaggagc aaatgcttta ctaaaagccc ttgaaaccaa 420 tag 423 // ID KA520238; SV 1; linear; mRNA; TSA; MAM; 358 BP. XX AC KA520238; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27285 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-358 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-358 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; 497147d1b27f5e185eabe7e950f5c0a9. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..358 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 358 BP; 112 A; 71 C; 92 G; 83 T; 0 other; agttctccag aatggaagaa gtgccaagtc agagatggat aacttctccg tcggtgaagg 60 aaccagtgaa ggaaccatcc aaagctgcta gacagaaaaa gagaaccata attttgggag 120 gtagtcggaa aggaaaagct actattagaa ttggccacaa agaaacctgt gagtaatgga 180 aagaagcact ccactggtaa agattcttat gctcctgaac ctctgccgcc tggtgtgtct 240 ggtttcctgc catggcgtac tgcagaacgt gcaaaaagga acagttccgt taatcaaagc 300 tcgtgatgtg tgtaatcagt tgcagagatt ttcctgtgac tgtgaccata gagagtcc 358 // ID KA520239; SV 1; linear; mRNA; TSA; MAM; 774 BP. XX AC KA520239; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27286 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-774 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-774 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; 0652929bb1d19f123c71e172f9dc4957. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..774 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 774 BP; 261 A; 152 C; 176 G; 185 T; 0 other; aaactggagg agtgcctaaa gcagttaaag gaggaaagag taataaggct taaggctgat 60 aaacgagtca gtgagacatg aaaatgacca gttaagaaat ataaacttct ctttgtctga 120 agctcttcat gcacactcat tgacaagcat gatcctggat gatgaaggtg ttttgggcag 180 cattgagaat tctttccgga agttccatgc tttcttggat ctccttaaag atgctggggc 240 agctggccac aatggctggt atagatcagt cagattttca tttactaggt cgtccccaga 300 tgaattctac tgttagtagt ccacctaaag aaaaaaagaa ggcacttaaa gaagaaaaat 360 cagaattaca gcagagtgcc ttaggacaaa tgcaaaatat ccaagaagat tacaggtgat 420 gctagaattc cgttgcctgt cgacaccttc catgtcccag cctctactca ggagacctta 480 gagacttcca aagacaactt gggagtccca gtcacagaac agcggcagga gtcttttgaa 540 gatttcattg ctagagcatg ttctcctcca gcagatgtaa tttgtggaag tgcaagtcaa 600 agaaaagaag aggaattatc tagaaatagc aggcctgcct cagaaaaaat gaccaaaaca 660 ggtgaatata tcaaaaagca ctctgctaag aaacagcctg ggaaggacct gcattcctgc 720 tctgactcac ctgtaaagca gaaaagcaaa ggaattgggc aaaatagctc tttg 774 // ID KA520240; SV 1; linear; mRNA; TSA; MAM; 461 BP. XX AC KA520240; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27288 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-461 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-461 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; c07c8c9980bebd3b11f92fde018d1842. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..461 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 461 BP; 108 A; 85 C; 85 G; 183 T; 0 other; tccttattct cataaagaga tgaaagtgac ataatgtatg tttatataac aaggtctgtt 60 tttaacacta aatagtttat atctccatgc acttatgttt tctaataata cagttcatgt 120 gggtgtatgt tcagactttg agaatttgat aggatccgta accattgaag tgttacgttt 180 tcaacggctg tgttcctacc ctaccccttc ctttttaaag ctacttcaca agggttggaa 240 gctccctggc tcacttttcc attcctctca gtgggtagaa gaaaggttgg ttggttgttt 300 ccttgttttt aaactaaaaa tctctgttaa gctcttcttt cctttgttca catgactgtt 360 tctttatggt gtttggccag taatgctgtg agtttgggaa gatctttgct gaagactctt 420 ttcccctgtt attcacccat tgtcagtttt ttatgttgaa t 461 // ID KA520241; SV 1; linear; mRNA; TSA; MAM; 947 BP. XX AC KA520241; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27289 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-947 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-947 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; 2f0f21187a9d74a80852242d6eb62464. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..947 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 947 BP; 251 A; 209 C; 247 G; 240 T; 0 other; gccacaggtc atcggatttc tctaagatta tcaacaacac agagaacctt gtacgggaat 60 tgttccagac aactacaaag tgatttttgt acaaggaggt gggtgtggcc agttcagtgc 120 tgtcccctta aacctgattg gcctgaaagc aggaagatgt gctgactatg tggtgacagg 180 atcctggtca gctaaggctg cagaagaagc caagaagttc ggaactgtga atatcgtcca 240 tcccaaactt gggagttaca cgaaagatcc gagcacctgg accctcaacc cggatgcctc 300 ctatgtgtat tactgcgcca atgagactgt gcatggagtg gagtttgact ttatccctga 360 tgtcaaggga gcagtgctgg tctgcgacat gtcctcaaac ttcctgtcca ggccagtgga 420 tgtttccaag tttgattttt gctggtgccc agaagaatgt tggctctgca ggggtcacgg 480 tggtgattgt ccgagacgac ctgctggggt ttgccctcaa agagtgcccc tcggtcctgg 540 attacaaagt gcaggctgga aataactccc tgtacaacac acctccctgt ttcagcagtc 600 atgggcttgg tcctggagtg gattaagaac aacggtgggg cagcagccat ggagaagctt 660 agctccatca aatcgcaaat gatttatgat attattgata attcgcaagg attctatgtg 720 tggagcccca gaatagaagc aagatgaata ttccattccg cattggcaac accaaaggag 780 acgatgcttt agaaaaaaga tttcttgaca aagctcttga actcaatatg atctccttga 840 aagggcatag gtcagtacgg aggcatccgg gcctctctgt acaatgctgt cactgtcgaa 900 gatgtccaga agctggcagc ctttatgaag aattttttgg agatgca 947 // ID KA520242; SV 1; linear; mRNA; TSA; MAM; 2307 BP. XX AC KA520242; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27290 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-2307 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-2307 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; ae782c8539bfb12bb255945eac06499a. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..2307 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 2307 BP; 536 A; 688 C; 583 G; 500 T; 0 other; cctttaaatt tacaatttcc gagtcctgtg atcggattaa ggaagagttt cagtttttac 60 aggctcagta ccacagccct ggaatgtgag aaactcgcca gtgagaagac agagatgcag 120 cggcattatg tgatgagatg tcctatgggt tgaatataga aatgcacaag caggcagttg 180 tcaagaggct gaacgctatc tgtgcacaag tcattccttt cctgtcccaa gagaacaagt 240 ggtgcaggct gtggaacggg ccaagcaggt gaccatggca gaactgaacg ccatcattgg 300 gaactccagg cccagcatct atcccatgga catggtctgc cagtgcctct gaccccacac 360 ccttcggggc ttcagcctcc tgccattccg gccttctggc cctctccagt gccctgggag 420 gccagtccca ccttccaatt aaagatgaga agaagcacca tgacagtgat caccaaagag 480 ctccatcaag cagtatcccc atcagccagt ttccgaggtg ctgagaagca cagaaactcc 540 acagactatt cctctgatag caaaaagcag aaaactgaag aaaaggagat tgcagctcgt 600 tatatgctga gaagagtgat gacaacttgg tggttgacgt ttccaatgag catcacctcg 660 agggagccca gcacattccc caagagagaa cggcctggac aagacacgcc tgctcaagaa 720 agatgcccca atcagtccag cttcgattgc atcctccagc agtactcctt cctccaaatc 780 caaagaactt agccttaatc tactactcct ggatgcaccc accccaggca gtaattccac 840 tcccggattg aggccggttc ccggaaaacc gccaggagtc gacccgttgg tcattagacc 900 tcattattat ttcctgtgtg tgtccttggt ttttctcctc ccttctgttt gggtctgtag 960 cttcaagcct aaggaccccc atggcagtac cttgtccata cccaaccccg tttgggatcg 1020 tgccacatgc ggggatgaat ggggagctga ccagccccgg agctgcctac gcagggctac 1080 ataacatctc cccacagatg agcgcggctg ctgctgctgc cgccgcggcc gctgcctacg 1140 ggagatcacc agtgttgatc cacaccatca catgcgtgtg ccggcgatac ctccaaacct 1200 gacaggcatt ccaggaggaa agccggtcct tccacgttac cgcagatggt cagatgcagc 1260 ctgtcccctt ccccccggat gcccttatcg gccccggcat tccccgacac gctcgccaga 1320 tcaacaccct aaaccatggg gaggtggtgt gtgcggtgac catcagcaac cccacacgac 1380 atgtgtacac gggtgggaag ggctgcgtca aggtctggga catcagccac cccggcaaca 1440 agagccccgt ctctcagctc gactgtctga aataactaca tccgttcctg ccgattgctc 1500 cctgatggtc gtaccctaat tgtgggaggg gaagccagta cgctgtccat ctgggacctg 1560 gcggctccca ccccgcgcat caaggcagag ctgacgtcct cggcccctgc ctgctacgcc 1620 ctggccatca gcccggactc caaggtctgc ttctcatgct gcagcgacgg caacatcgct 1680 gtgtgggacc tgcacaacca gacgctggtg agcagggcca cacggacggg gccagctgta 1740 ttgacatttc taatgatggc accaagctct ggacagggga caacacggtc cggtcctggg 1800 acctgcgtga ggggcggcag ctgcagcagc acgacttcac ctcccagctc tgggctactg 1860 cccgactgga gagtggctgg ccgtggggat ggaaaacagc aatgtggagg tgctgcatgt 1920 caccaagccc gacaagtacc agctccactt gcacgagagc tgcgtgctgt cgctcaagtt 1980 cgcccactgt ggtttgtcag cacgggaaag gacaaccttc tgaatgcctg gagaacacct 2040 tatggggcca gtatattcca gaaagaatcc tcatcggtgc tcagctgtga catttctgtg 2100 gatgacaaat acattgtcac tggctctggg gataagaagg ccacggttta tgaagttatt 2160 tattaaggac aaatcttcat gtggaatgga ctccttctcc ttgtagcact tttttctctc 2220 atccttctgt gcccctgcat ccaaaaccaa ggatttccta ttactcattg cagttgtgga 2280 atcagcccct cctcccccac ttcctcc 2307 // ID KA520243; SV 1; linear; mRNA; TSA; MAM; 4142 BP. XX AC KA520243; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27291 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-4142 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-4142 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; cb98c2d101294b7aa473b437ed139568. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..4142 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 4142 BP; 810 A; 1185 C; 1250 G; 897 T; 0 other; aaaaatacaa aaaaaacatt tcacaagatg caaaaccggg aaacaagtta attggagaca 60 ccactgatct accaaggaca gataggaggg aaaccacaag gaacagaaag gtaatctcgg 120 cagacctcac agaaagaaaa ggatgaactc tgcctgggcc ggcaggctcc gttcctggag 180 cctgcaaccc tcacccctct gtccacgttg cctcggtgct ccatttggtc taggtagata 240 ggtgaccttc tcttgatgtg ctcgttgcct cctctttgta gacgcaaagt agttttgtgt 300 caaggtttgg aaacaggttt ttgtgttttt aaagttacaa cttttctatt tctacaaatt 360 caaaacattt tggcccaatt caactataaa cattaaacca cataatgttt tcagtagatg 420 acttcataga ctgtagcctt cttgtcccct gagccagtga caatgtattt gtcatccaca 480 gagatgtcac agctgagcac agatgaggac tctttggact ggaagaatac tagctccata 540 gggggtcctc caagcattga ggaggttatc ttttccagta ctcacaaacc atttacagcg 600 aattttaggg acagcacaca gctctcgtgg agatgcagct ggtacttgtc aggtttgttc 660 acgtggagga cttccacgtt gctgctctcc atgcccacag ccagccactc cccagttggg 720 caatacccaa gggagaatat ctgtgaagtc gtgctgctgc agctgccgcc cctcgcgcaa 780 gtcccaggac cggaccgtgt tgtccaagcc gcctgtccag agcttggtgc catcgttaga 840 aatgtcaata cagctggccc cgtccgtgtg gccctggaat tgcctgcgtc tggttgtgca 900 ggtcccacac agcgatgttg ccgtcgctgc agcatgagaa gcagaccttg gagtccgggc 960 tgatggccag ggcgtagcag gcaggggccg aggacgtcag ctctgccttg atgcgcgggg 1020 tgggagctgc caggtcccag atggacaggg tactagcttc ccctcccact atgagagtgc 1080 agccatcagg gagcaatttg caggaacgga tgtagttatc cctgtttcga gctgagagac 1140 ggggctcttg ttgccggggt ggctgatgtc ccagaccttg acgcagccct tcccacccgt 1200 gtacacatgt cgcgtggggt tgctgatggt caccgcacat accacctctc catggctgag 1260 ggtgttgatc tggcgagcgt gtcgggggat gccagggccg atgagggcat ctggggggaa 1320 ggggacgggc tgcatctgac catctgcagt aacgtggaag gagtatgcgc cccggggatt 1380 cctgccaggt ttggagggat cgtaggtaca cgcatgtgag ggggaggatc aaacccaacg 1440 agcgcccata agccaccacg gcggcagcgg ccgcagctgc actcatctgc ggtgacatgt 1500 tgtggaggct ggcataggcg gcgctggggc tggtcagctc accattcatg cccgcgtggg 1560 gcaccatccc aaatggtgcg gggtatgggc cgggcaccgc caggggtgtt ctcaggccag 1620 ctgccggttg acgagggggt ccatggctgg aggcttgccg aggcctggac ggagtcctgg 1680 agtggcgctg gtgcccggcg ttggcatgtc actccgaggc gtcggtgtgc tggatttcag 1740 cacaggcgtg ctggcttttt catgatttct ttggatttca aagaagtgga acttcccgag 1800 gaggcagtgg atgccgggct gctggaggcg tctttcttca gcaggcgggt tttgtcaatc 1860 ccattttccc tgggtgaatg ggcggggctt gcgcggggag atgaggggtc gaaacatcca 1920 caactaagtt gtcatcgctt ttgtcaccat cgctatcctg gagtccttat catccacctt 1980 tctttttttg atgtcattag aaaactcagg tccatttctg cgtttatctg tgcctcttag 2040 actgtctggg accaagaggg aattactggt tctctgtctc gcattaacga ggcagttgcc 2100 aagatgtcaa gatgcctgcc atctaaagag atggagaaat ctacagatgc ccacgttaaa 2160 ccctgaaaac ctccagggtg aactgtgttt cagtggccaa gctttgcgac agacagttcc 2220 tcttagctca ttgttagcgc tctgtatggg ttggggcttt ctttagcggt gcacaaactt 2280 tgcagcactg taagagtgtt aggacaaggt cctaatctgg cttgcccggc ctctcacctc 2340 tgtggtgctc tgcatcgtgg tgcttcttgt catctttaat tgccaagtga gactggccac 2400 tcagagcact agacagcgcc aggaggccgg cactgccgcc gaggggcggg attccaggag 2460 gctgaagtcc cgaagggtga ggggtgaggg gcactggagg tccgtggcca tgagaaagat 2520 gctgagcttg caactgctgc tgccaggtag acctggtagg ccacgtaccc cgatgatggc 2580 attcagctct gccatggtca cctgtttggc acgttcaaca gcctgggcca cctgctgttg 2640 atgttcagac agaaatggga tgacttgtgc acaaatcgta ttcaatctct tggcgatttc 2700 agtctgttat gcatttctat gtttaatcca tatgacattt cataataata gtgcctctgc 2760 atttctgtct tttcacttgc cagtttctca cattccaatt taaggtactg cgcctgcagg 2820 aactgaaatt cctctttaat ccggtccagg gactccggga tagtgaactt gaagggctgg 2880 cctgcagcct ggtgcggcgt gccggctctg cgggaacatc gctctggagg aggccgcggc 2940 tctgttcccg ggcaactcaa ttctccgctc aatttccaac tttaatcccg ccgaggaaaa 3000 ttaagccggg aagccaggca gaagcggaca gcgcgctggc cacgcacgca ggcgcgctcg 3060 gcgggacgca caggccactc tgctcccgcc cgtgcggact cccgcgctca gggccacatc 3120 acagggcact ccgggcccgg ccgcaccaag aacctgcggg acgccgctgg tgctcgtggg 3180 gaggacgcgg gggctgcgct tccacccgcg ggtctcggcc gcccgggctg agagatgacg 3240 agcccggtga ctcgatgctc cccgcggcga tccgcgtgcg ccgcagcggt cccgggcaac 3300 aaatccaggg gaggactgtt ctcctttgct cttctcccgg cccgcctctt cttcgggtat 3360 tccccgaggc gcccgccggc gaggtgcagg tggcgcggcg cccgcggcta accccacaca 3420 aacaaacctg actgtgttca ggggtgaccc cctcgggccc aggcaccgct cacgaccggg 3480 agctcacagg ctcccgtgag gcggcggggt gcgaggtccc ggtcgcagcg gaggctcccc 3540 gcccggcgct ccgcagcttt aacccgagac gaggagcgcg ggatgacgac gaggcgggga 3600 aagtgcggag ggcgcgccgg gaggcggctt ggcacgccca gtgcagccgg ctctgggtgt 3660 tctccgaggt tgcacaaacc ctcctgggcc gacgagtcta ctccgccgag ggcaatcccg 3720 cagccgcccg ctgctcctcc agacctgggc gcatccgggc gccgcggccc gcgcgcactc 3780 gtcctgcacc gccggccaga cctctccgga ccctttctta gagcctctcc gtcgatcctc 3840 tttctttcct tctcttcgtc tgcctctcct cacagggcgc tccagcccgc tccaaagttc 3900 tctcacgacc cggagaaaga catccaagag acggtgagga aaagcccaag agtgcgctcc 3960 gccgctcggc ctccctcccg ggccggcaaa ctccgcgggc aagtccggag cagtcgcgga 4020 ggcggttaag ttgccgaggg caggcggagg tcccggttgg tggcgcggtt cccgcccggt 4080 cctgcgaagg cgggagtggc gcagtcggct gcctcgggga cgcaggacac agggtacccg 4140 cc 4142 // ID KA520244; SV 1; linear; mRNA; TSA; MAM; 1615 BP. XX AC KA520244; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27292 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-1615 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-1615 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; d68240511cab9255e1096e357e953ee9. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..1615 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 1615 BP; 300 A; 535 C; 519 G; 261 T; 0 other; agggccagtt cccatccccc cagcagcatg gcatcctgtg ctgagccctc tgctgcagac 60 cctgagccca ctgccccgcc acctgctggg gtcccaccac ttgaggactt cgaggtgctg 120 gacggggtgg aagacgctga gggcgaggag gaggaagaag aggaggacct gagtgaactg 180 ccgccacttg aggatgtggg gcagccccca ctggaggagg ccgagcagcc cggggccctg 240 gcccgagagt tcctggccgc catggagccc gagcctgagc ccgccccggc ccccgacgag 300 tggctggaca tcctggggaa tgggctgttg aggaagaaga cgctggttcc aggcccaccg 360 ggctccagcc gcccgaccaa gggccaggtg gtcactgtgc ggctgcagac gtcgctggag 420 aatggcacgc gggtacagga ggagccggag ctggtgttca ccctgggcga ctgcgacgtc 480 atccaggccc tggatctcag tgttccgctc atggacgtgg gggagacggc tatggtcact 540 gctgactcca agtactgcta tggcccccag ggcagcagga gcccatacat ccccccgcat 600 gcggccctgt gcctggaggt gactctgaag actgctgtgg atgggcctga cctggagatg 660 ctcacggggc aggagcgtgt ggccctggcc aaccggaagc gggagtgtgg caatgctcac 720 tatcagcggg ccgacttcgt gctggccgcc aactcctacg acctcgccat caaggccatc 780 acttccagtg ccaaagtgga catgacattc gaggaggagg agcagctcct gcagctgaag 840 gtgaagtgtc tgaacaacct ggcggcctcg cagctgaagc tggatcacta ccgtgcagcg 900 ctgcgctcct gcagcctcgt gctggagcac cagcctgaca acatcaaggc gctcttccgc 960 aagggcaagg tgctggccca gcaaggcgag tatagtgagg ccatccccat cttgagagca 1020 gccctgaagc tggaaccttc caacaagacg atccacgcag agctctcgaa gctggtgaag 1080 aagcatgcgg cccagaggag cacggagacc gccctgtacc ggaagatgct gggcaacccc 1140 agccggctgc ctgccaagtg tcctggcaag ggtgcctggt ccatcccatg gaagtggctg 1200 ttcggggcaa ctgctgtcgc cttggggggc gtggctctct ctgtggtcat tgctgccagg 1260 aactgaccgc ccaggtggcc accatcccct ccactcaccg tggaccccca ccctgtgctc 1320 cctaactccc ccaggctccc tgtccactgc cctaactggc ttagccccct cctctggggc 1380 gggggcagtg aggtttgggg gtcacatggc cccgcgagca ggagggactg agccctattg 1440 gaggaaagca aggcagggcc ctgacctcac atccagcccg gagcaagggg gccctcattg 1500 ctccagaccc gattcccacc ccacccccgg ggtgaggtcc cagcagggat cagtcccagt 1560 atcctcttcc caacaggcct gggggcagcc ctccccctgc ccagcccctt tccac 1615 // ID KA520245; SV 1; linear; mRNA; TSA; MAM; 950 BP. XX AC KA520245; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27293 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-950 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-950 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; 0923528039c7792c8bbf6ec962fd86d5. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..950 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 950 BP; 228 A; 284 C; 241 G; 197 T; 0 other; cttgaagtac catccagata agaacaaaga acccaatgct gaggagaagt ttaaggagat 60 tgcagaggcc tatgatgtgc tgagtgaccc taagaaacgg ggcctgtatg accagtatgg 120 tgaggaagaa gactggtggc ggttcctcag gtggctccag tggctccttt cactacacct 180 tccatggaga cccccatgcc acctttgcct ccttctttgg aggctccaac cccttcgata 240 tcttctttgc cagcagtcgc tcagctcgtc ccttcagtgg ctttgaccca gatgacatgg 300 atgtggatga agatgacgac ccatttggcg cctttggccg ttggagcccc agaaccacta 360 taccctcggc gcaaggttca ggacccacct gtggtgcatg agttgagggt gtccctggag 420 gaaatctacc acggctccac caaacgcatg aagatcacaa ggcggcgcct caaccctgac 480 gggcgaactg tgcgaaccga ggacaagatc ctgcatattg tcatcaagcg tggctggaag 540 gaaggcacca agatcacctt ccccaaagag ggcgatgcca cacctgacaa catccctgcc 600 gacatcgtct ttgtgctcaa agacaagccc catgcacact tccgccgaga cggtaccaac 660 gtgctctaca gtgccctgat cagcctcaag gaggtgcggc tgcaccgtga acattcccac 720 cattgatggc cgagtgatcc ctttgccctg caatgatgtc atcaagccag gcaccgtgaa 780 gagactccgt ggggagggcc ttcctttccc caaggtgccc acccagcggg gagatctcat 840 tgtcgagttc aaagttcggt tcccagatag attaacacca cagacacggc agatccttaa 900 gcagcaccta ccttgttcct aggctctgcc ctagccaacc cagagtctac 950 // ID KA520246; SV 1; linear; mRNA; TSA; MAM; 1955 BP. XX AC KA520246; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27294 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-1955 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-1955 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; 71b6882c76a3ec171d457d57d43d9f31. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..1955 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 1955 BP; 565 A; 450 C; 381 G; 559 T; 0 other; tttttattaa gctgtatgtt taggttacat ctaagtattt caggcattac ttcacttgac 60 aagcagacat gaaattttag gaaacatttc aacaaattcc aaggactgaa ccactatgga 120 gaacagaaca tacatagtct gaagttaaca ggtatggtaa gtacttcaag gggtcatcaa 180 gagaaagatg ctaaatgaca acttgtcctc ttctataaag tgatcatcct aggcaagtag 240 ctacaaagag aagcacataa ctattacaga gctagagaga ttgcatccaa gtccattatt 300 tttatttcag ggagggcttg ggtgtcatag cagaaggctg atgattcttt cagaataaca 360 tacatgtcaa gttttctatg tgtagtatta atgctaatat gattagctta tgtttaaaga 420 atcaaggaaa gaacaatttt gcatttaaaa ccactaagat atattagcca ctgcacgaga 480 tgcttaacca ttgaggagtc atctctgtac tctcatagtt tatgagttct tctgagaaat 540 tttgattgtg accgtcttga tttctgtgta ttcatggaaa ccatattctc ccagccagac 600 atcttgaatc caccgaaggg gcactgggca gataccacac tatagcagtt cacccacatg 660 caaagcagag gagactgtga tggctttatc aatatcgttg gtaaaaattc ctgcagataa 720 cccatagaaa gtattgtttg ctctcttgat tacatcatct aaagacttaa acttcatgat 780 ttgctgcaca ggtccaaata tctcgcgcat atcatcagta acatcagaga aaactgtggg 840 ttggataaag tagcctttat tcccccaagg gcctccacca cattccagct tggccccctc 900 cttcttccca ctttcaatga ggtcaagtat tttttcatat tgttctttat caatctgaga 960 ctcctggggt cagaggattt ccaagaacat actttttcgc cctctcaaca ctccttcgaa 1020 caaactcatc gtaaattgat tcttctacaa agagacggga tgcagctata caacactggc 1080 cctggtgata gaatactcct tggtgtgcaa attcaacagc attgtccaag cacacaatgc 1140 aaggactctt tcccccgagt tccagggaca cccttttcag attgcttttc ccagcagctt 1200 ctttgatgag tttgccaacc tcaaggccac tttgtctaca tccatgtgag aagaaatggc 1260 tgcccctgca gtaggcccat aaccagggac aatattcact actccaggag gaaaccctgc 1320 ctaaaagaca agtaaaaccc atgtgaagag cagtcagagg ggtttgctct gctggtttga 1380 caaccactgt gtttccgcag ctaagggcag gccctatctt ccagaggaac atgagcaacg 1440 ggaaattcca atagaaagca acacacacca acaggctcac ttcttgtata tgtaaaaaag 1500 tttccatcca gccctggatc ttgtcagccc agcctgcaca gtagcgtagt gtttttatgc 1560 agcctcctaa atccatcaga tatgcattgg aaaatagttt tccaccattc attgcctcca 1620 ttgtcgctct ctttcaatta agtcagccaa cttgtttaac agccgtcctc tctctgaagc 1680 atccatagta cgccatggag agccaatctg aaaagcttgt cttgcagcct tcactgcttt 1740 gtcaacatcc tccttaacct cacagagttt ctcctcagtt gcgggattaa agactggaaa 1800 tttcttacca ctcactgaac tatgccattc attgtttatg aagatcttat gcaaattggt 1860 gagtggggca ggtacgtctg gcatggctga ggacgacatt gctggttctg ctcctggaac 1920 acaggtgaca ggctcagcga tttggttctg atcca 1955 // ID KA520247; SV 1; linear; mRNA; TSA; MAM; 650 BP. XX AC KA520247; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27295 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-650 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-650 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; 59bbb7cb89e96561650ee1929f7f19e1. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..650 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 650 BP; 166 A; 154 C; 98 G; 232 T; 0 other; acttgaactg ggttgcaaag ctagcaagtg gtagagtcag gattcaaatg caggctggtt 60 tccaattatg ctttctcagc tatgttgtgc acttttgaat tgatcttttg ctactctaca 120 tctccaacaa tattctaaag ctatccatgg cttctcactg ctccactaat aatcgtaagc 180 tgattttctt gaattcaagc cttcttatct gtatccaatt taactctgaa atcacacttc 240 ccccataatt ccctaccagc caggcaaatt cactaacccc tcaatatgcc acctggaatg 300 ttccttcaca aatggccttt tctctacttc ctaacatctg acacttgttt cctgcttttc 360 tgttacgtct tctcttattc taccaactgt ctttatcaac tgaatttcca caggagggtt 420 agaaccacag aatcttaggc atggaaaaga gttcatagac cttttacttt cttccctgac 480 tcctttggaa cagtgagact tagagagatg ctgaaaatgt tatagtctag aggtgcacag 540 attttctatg ctctaatact gaactctgca ttttaattgc ttctctacct ccatgaccta 600 tggattcaca gtctgttact atttatttca tagtatgtgt ttttttttca 650 // ID KA520248; SV 1; linear; mRNA; TSA; MAM; 458 BP. XX AC KA520248; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27296 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-458 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-458 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; 4f793d4bfa1569afc6f8c248df321b31. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..458 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 458 BP; 94 A; 106 C; 69 G; 189 T; 0 other; gcattctgtg atgactcaag atgaacgtga ccctttcttt ctctgatccc cagtaaattc 60 cctcaaagga actctttcag agtttcccgt ggattatatc atttgtatac gcatcagttt 120 cccaaacaga tgtcacctgc ctggtagcag taactgtttc tctctcactc cctctttctc 180 ctgctgtcca gctctgtgct gctactttag ttagctggaa tcttgtactt gtttcttctt 240 taacgctagt ggcctatctt cagggaaaga gttttctttt ttttcctcgg cagatcactt 300 cccatcaaga ttattttcta tagttgttta cgtttttctc gtttctgaaa cctggtctgt 360 tttacaacta tttcctcttt attatttctt attgaagtct tagtacacta aaatgatctt 420 tgcttttctt ttttacaaga tgattcattt tatcttgc 458 // ID KA520249; SV 1; linear; mRNA; TSA; MAM; 1863 BP. XX AC KA520249; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27297 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-1863 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-1863 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; 23b67fa388efdbb1c39dd5f6bedbfd7f. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..1863 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 1863 BP; 431 A; 511 C; 545 G; 376 T; 0 other; tctcccgatg tctgaaattc ctcacgaagg gtttcacggt cagggggacg gatccagccc 60 aaacagattt ctaagtacag ggggagggac gtattctcct gtggcaactc agtttgggcc 120 tccagcctcc gccagagagc agtggcctca tccctccgat ccagcctcct cagagtctga 180 agcaggtgat aggaagcatc ttgattacct gtagcccatc tgcacactga gaaggaagtc 240 ctgtagggct ttggtatcct ggccaagggc cacccattcc agtccacgac taatcagggc 300 agctgtctga agctgttgta gtgccatatc agacgtacac ccctgctcac agctggaagc 360 aggccctggg gactttatcc ttaggtgtgg cccggaagat cagctcaaga cactattcac 420 taattgcctc cttttgggcc cccagttgca cccaagcttg gccctgaagc agatgggtag 480 cagagaccca gtgtgagcag tgtggtgact ctttggttct tcttctggca tcttcccaca 540 gccgaggcct cttgggaagc agaaatgatg tgcggctaag cagctcctca catacggtca 600 aagcatcctg ggctcggcct gcctggatca acgctgctgc tgcctccaaa aacaactcag 660 gcacacaggg ccctgggggg caaggtggtg gggagaactg gggtgggaag agaatgcaat 720 gcagtgtctt gaggagacat gaaccactac ctccaaggct ctagtatcat caccaggctc 780 tagtaccatg cagggaccat ccactgcttg ctgccctgga tctcccttgc tctgggtgga 840 acctcacctt cctgtctgta ggcatcggct tgctagcagg tacttggcct ggctctgtgt 900 gccacagtga aggggtgagg ctgggtcagg ttgtgggagt aataactcta cctcaatgag 960 aagctgacgg gcttcaggga tacgagtgat actcaaagcc taacaacagc agctccagac 1020 tctcaatctc cgctgctatg ttccccagtt gctgatatag cctggaggcc tccagaagag 1080 ggggacccca ggttgatccc tctttcaggg ctgcaaccaa gtacagcaga gctctctgtg 1140 gactgcccta ggggacgaag acaggtcccc agggctgtgt atacctggac caacagagac 1200 cgtgggcaca gacctgaggc tgcttcatgc aggctgctca gtgccttggg caagctccct 1260 gtgatcagct cctggaggcc tgtgggcaag caggctgtga gcttagagag gccaacaggg 1320 caagcgggcc tgatggggaa gaagagcaca aagaagttcc accaagctga atggtacagg 1380 acagaaaaga catgagccca gaggacttct taagacagga agtggagagg aagggacaag 1440 tcagattgtt aactggcctt gacgataggc aaatgctgtc agaaggacat ccctcaagcc 1500 tcgggcatcc tgcagggtca gcggagcatc tgactcctca gctgggggtc tccaagtttt 1560 cagaagcagc agcatatcct cagagactct gctagtcagg gtctgcagca gcaaggtcag 1620 gtccccaaga cggttagtgg tcagccagag ggcagcttgc aggccggcaa ggtggtgaag 1680 ggcagggagc agctccggca gaagggagga aacacggagg gcggagtccc acagcccccg 1740 gagcccatgt tccagcctgg ctcccagctg cccctgcgtc tccagcacac atagagctga 1800 ggtgcaacct catctctagc tttccttctc tgcaggagcc caaaggtcac aaaggtgctc 1860 ctg 1863 // ID KA520250; SV 1; linear; mRNA; TSA; MAM; 849 BP. XX AC KA520250; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27298 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-849 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-849 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; bd7e276eddaf177d7394d28157b1819e. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..849 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 849 BP; 195 A; 247 C; 256 G; 151 T; 0 other; tagcctggag gcctccagaa gagggggacc ccaggttgat ccctctttca gggctgcaac 60 caagtacagc agagctctct gtggactgcc ctagggggca gaaaggacac aaaggacaca 120 agctccaact catgctagga cggtctttac catcttacga agacaggtcc ccagggctgt 180 gtatacctgg accaacagag accgtgggca cagacctgag gctgcttcat gcaggctgct 240 cagtgccttg ggcaagctcc ctgtgatcag ctcctggagg cctgtgggga taggcaaatg 300 ctgtcagaag gacatccctc aagcctcggg catcctgcag ggtcagcgga gcatctgact 360 cctcagctgg gggtctccaa gttttcagaa gcagcagcat atcctcagag actctgctaa 420 cagtcagggt ctgcagcagc aaggtcaggt ccccaagacg gttagtggtc agccagaggg 480 cagcttgcag gccggcaagg tggtgaaggg cagggagcag ctccggcaga agggaggaaa 540 cacggagggc ggagtcccac agcccccgga gcccatgttc cagcctggct cccagctgcc 600 cctgcgtctc cagcactagg ccctgctgga tatcctgtgc caggtcctca gtgaaaccct 660 gcgccaggtt tgccctcagg gtgataaagt tgcagatgac agtcagttcc aaaggcagaa 720 cagaaacagt cgcagggagc cctggagcga ctacagagga gtctcctgag cccttccagt 780 gcatcctgag ccaactgctg tcgcctcaga ggcagacttg actcctgagc aacctgtcga 840 actagctgg 849 // ID KA520251; SV 1; linear; mRNA; TSA; MAM; 583 BP. XX AC KA520251; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27299 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-583 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-583 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; 5493e458a891139fa79aed5748d67abe. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..583 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 583 BP; 122 A; 165 C; 182 G; 114 T; 0 other; aagggtccca gcaacagcgt taccttggcc tgtcgaacta gctggtcatt cttttccctc 60 cacaggtcca ggcagctgac gtgtgaggct gaagagccca gaggagtctg gtgagccatg 120 atagccaagg ctggggccag acacctgaag ggggctgctg aagggtaagc ctgaagcccc 180 cactgagcaa ggaagaaagg tttcgtgcac ttctgccccc ggccaagaat cctttgctgt 240 tcgcggggtt ccaatctgga cggcctaccg tttccgggag aaacggactc tcccctgctt 300 ggcggggatt ccacctccgc cttttctacc cgcgcttctg gttggcccag ttggcaaaat 360 gctaggcggc ggttggtcgt cttcaaggtt acttactcct cgcgggaaat tggaagaaga 420 aacaagaggc cagaccagaa agggaggcag agacgggcca gagaccggag gcgtgtctga 480 ctggggaggt cgtagggctc gccgtcccgc tgttcagcca tcgaggttgc caaagccttg 540 ggaagttgac ctcaacaccc ggaacccgcg gcgaagtcct tcc 583 // ID KA520252; SV 1; linear; mRNA; TSA; MAM; 554 BP. XX AC KA520252; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27300 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-554 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-554 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; 69cb60b3efe14ba0f70087cc445259c9. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..554 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 554 BP; 153 A; 137 C; 156 G; 108 T; 0 other; agtctagact ggggaatagg gtagttggta attacatgac tgagtttgag gggtgtccct 60 caccccaact gaggtaggtg ggtcagaatc tggccaggaa ggaggaggca ccctagtcct 120 tggccctgac tctgaaccct gaacaccttc ctcagtcagg accccaaagc gaagagacac 180 aggcagaaga aggagaggga caaccggagt ctggagtcct agatgtgtgc acaactgcat 240 gcacacgctc tctctcacat acataccaca cacacaacac acacacacac aaacatacac 300 acacacaagt tggctttcag gaggggtgag gtcagggaag tgaaaggcat tgggaaggac 360 aggggaagct gagcctttgg ctggtgactc agttcttctg ggataacttc tctgctctca 420 gctgagggag aatacttctc ccacagcccc ccacatcagc ctcttcaact cctgaggttg 480 gagcaatatc tgagagtggg aaaggagggg gggcaatgcc aattatcagg tttgggaggt 540 taccaaggca atcc 554 // ID KA520253; SV 1; linear; mRNA; TSA; MAM; 1608 BP. XX AC KA520253; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27301 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-1608 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-1608 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; 585df3baf86e8e2dca2b7318016d354e. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..1608 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 1608 BP; 330 A; 446 C; 546 G; 286 T; 0 other; tgcctgggaa cttaggacaa ccttggggta gctccagttc ctccccaccg tcgcagccag 60 cctgggaaat cccaagggag gggccggcac gtggaggacc cagaacaggg cagagtgtgg 120 taaggtcaga agctttaaac acccaaacgg tcaatttggg catgagcatg gcgagggcat 180 taattcaagc ctgatctcgc cacctctcca ggtattcact ctgtccagga tggagcagga 240 cgggcaggtc cttggcccac aggggttcag ggcattgaca gtcagggcaa aggtgagtaa 300 cgtggattgt gaggggcctc ggtcacagcc tgcagttcgt aggggagccc tgtgtccagt 360 tccaggctcc ggcgggaaaa aagcaggcgg atgtcgccat gcaggcttaa gcggcctgag 420 cgggagctcc ggaacctggg ggagcaataa gtagcagagg aggcggccgg tggggccagc 480 attcccctcc tcacccacag gcaccaaaaa gaggcggtgg cgcaggaagg tcatgtgggc 540 agcaggcatg tccgaaaagt caaaggtaac gaggaacatc ttcaccacag tctggttggg 600 gttaaataag gtcacgggac atggtgccca ccttgggcac gctgtaaccc ttcctcccca 660 ggggactcag gtccacgacg ccgagccggg gcattttgct cagaaacgtc aaagaaggtg 720 acagtgacgg gcagcgtgac atgctgaggg cagtaggatc cactagctcc aatctctgct 780 gtgaagccct caatgcggcc ggacggtgcg aagcgtcctc gcagcaatga ttcgttgccc 840 aacagggtac ggctgacagc aggggtagga acaggggagg cactgggagg gctcagcagg 900 cctggtccct tccggaggct tcgaagggag ctcctggtag gggagaggac acacgagtgg 960 gctggttgac ttgagatgtt cgcgacgggc acctttcagc ctccgcccca tgggattaca 1020 gtctgttggg tcgctccttg ggcccaggca gcaggtggct ccagaagggt gtggctttgg 1080 catcagaact gttggcagca ggagggtggc ccagggttcc ccggcgcctc cgaggggctg 1140 gcccctcatc ctcagagctg acatccaggg cttctccagc aggaagcagc cttcgcttgg 1200 tggggcaggg gcctggaggt ccggggccag ggggtgtgtg ctcggggctg cacccattgg 1260 cagtgccagg ggactcccta ggccaggggc tgcccccatt gcccacccca gacactaggc 1320 tcttaccccc tatttgtgca agactgtgca aatcagtgtc aagtgtgtgc agctggcctg 1380 gaggggctgg ccccagggac gcccccaggg acccctgtcc ccttggatct ggggaagccc 1440 agtctctggt gtgcaaagta ctgcaggaag catttgatgg gggcaagggg gaacttcggg 1500 cccccgaagt ccaaggtgag gtggagctac ctccttgttc cacaacacag aggccgtgat 1560 ggcagaaatg ttggctggcc acgcccagtt tcagccccag tccccctg 1608 // ID KA520254; SV 1; linear; mRNA; TSA; MAM; 4382 BP. XX AC KA520254; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27302 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-4382 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-4382 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; d4fb1a3b4ee73ba3f65dea58f6347732. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..4382 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 4382 BP; 1149 A; 1177 C; 1249 G; 807 T; 0 other; ggagacagcc cctcagtcgc tcagatgtat ccaatgcagg agtcaggaat taggctctac 60 tatgatcttg aattataaaa taatgaagtc ccagatgcca gtaggtcctg gctgcatggt 120 ggtaagaggt gtggctgagc ctttcttgca gatgatccag cacccgtata gaccaggcta 180 gattgttctc cagctttctg ctgggtcaga actaactgcc tgaaccagga gctcacagca 240 ccatctactc gcatcaccaa agctatgcct agacaaagtc ccacgctgct cacaatgaag 300 cccatggcct caaaaatgaa cctgcaaaga aaacaccttc cagaccaaga gatgcctgcg 360 gaggatggag gctgccaaga cacaggccag aatctgaagg aagaaggaca aagaggtact 420 tgaggcccag ctgcagcagt gctgcactga agtggtgagg tgcatcccgg agccgcatct 480 ccatccgtgg ctcctgctcc tcctcaggcc cgactctggc ctcagcttca tttcctgggg 540 gctgccgcct cttctgggat ccttgatttt cacacagaaa gggccagagc aggagcaacg 600 ggcaacctac tgcgaatatg ggaggcaaag gtgttggctc ccaccaggaa agcagacagc 660 caggtaaagt cacgactctc tgagactccc acgaaggctg catgccattg gatagctgaa 720 aagacaggct ggtggccggt ggtatagaag gtctgtgagg ccatgagggc ccatgcaaaa 780 actgcatgcc acggcacagt aaaaggacca ggggtgatgg gtatcccggc agcaagcaga 840 tgcaggagaa ggaagctctg cagaaacaga agcaggaaca caagactaat gcgctctgca 900 tgcaatagca gaagtgggaa ggccaagagg gtaagggccg tgaccacagc agctgagtag 960 acgctcccca actgataggc agccaccgtc agcagaccct gagatttggt cctctctagc 1020 cggccccgga actcctcttg tatgtgtcgg tagatttgag gaaccacata atccaggtca 1080 gcctgagaag tggggggacc tgagaaggga gtgaggacag tcctggtcct tggagcacct 1140 gttgtggcct tcaccagcac tgtcacaggc ctccagagca gcagcacgag ccctgaagcg 1200 gccaaccctg ccacagcccg aggcaacaaa actgacgccc cagagaccag ggcccggaga 1260 cgtgggggtg cttcatctgc ccctgatgcc aatgcccagt aggcagcagt gcccagtccc 1320 attaggggca gcccccagcg cacaaagagc acagggggct cagggctctt gagattacca 1380 tagcagcgaa gccacagccg cacagaggct aacagggcca ccagcgcccc gacacaagct 1440 ccataccaca aattcttggt tcgaccatcc actgtggatc gcaagggact cagcaaggga 1500 gaggagctac aaacaggtgt ctcttcatgg cagcgataaa aaagtccagc tagccttata 1560 cataaaagca acccaactcc aagtcccagg gcatgcatgg cactgtattg cgggggacct 1620 gttggagtca aaaagccaag gcgaggtatc gagagtagct taggtggcag cagcttgccc 1680 tcccagtgaa gttgggcaac caggagcaag atgagtgaga tcaaaaggaa gggggcaacc 1740 ctggcctcgg ttataatata gctatcggag aagaaaccag caaagcgaat gagcaggagt 1800 aacaggactg gcccgggcat gggaaggaga gaggccaggg accttttcga tccccagctc 1860 gcccaagctt tccacagaaa aggcaggagt gagcccactg cagccatggc ccctagaacc 1920 acggaatcca gcttcagccc agtagatgcc aggagtccag cacacaccat ggcgccactc 1980 agacccgagg ctgtgggttt taggagaggg ccgaaataga aggctgggga tgctgcccac 2040 tgggatacca gtaggcaaag aaagcaggta gcagccagaa gagcagcacc ccctgccatg 2100 cggaccagag aaaaacgagc ccaagactca atgcacatgg cccgaactcc ccgcaggaac 2160 tgctgcagct caggaatcac agtttggagc gctgcctcag ccccctgggg gctctgcaga 2220 agtcgctggt agtcagcaga agccttggag aagagcttct gcaatcgatg cagctcctga 2280 acttgaaggt cctgagcagt ggctgagtag gtgtgaataa atcgggacac cattgagatg 2340 cagagctgag gcttgggcca gagcggagaa gtgaggctgg gagtcttcga tctctgagaa 2400 cacctcagct atcacctccc cgatgtttcc aaatgggatg ggcaggccca gcagcagggc 2460 cagcgtaggc acaaggttga tttgaggaat tatctctggc tcagcactgg ggaagagagc 2520 tctgggacta tatagaaaaa gtgcaactga ggtttccagc tcactctctc ctccatggtt 2580 cccactgatg gtcatcccat ggtccccagt caccaccagc agtgtgtcgt tcttcagacg 2640 cttcacaagt ccctgttatc catttgggta agtttcttag ccatttcagg atggtaaggg 2700 tcatgcttgt ggccacagtg atccacaccc aggaagtgag taatcagcac gtcccattcg 2760 tcactgtcca agaggtgttt catgatgcca ttgtccactg tctctaggtc tctgacattg 2820 aaggatggga agaataaagc ttgggagaaa actccaggga aaagatcatt ccaggtttca 2880 tctcccatga agaccacacg tcttccaaag ctgcttaatg agattatctt ccactatggc 2940 gctgctggca aaattactgc cagcatcaac aaaggtaggc agtgagccgg tggttaaggc 3000 cttgaggcgc tgcatggtgg tggtcggggg gtcagctttg gcttggtaga gcctggcatg 3060 gtggggctga ctttccagga gtctctgcaa gaagcccatt ttacccagga aaggcaggga 3120 gacaggaggc tccccagaaa caggtgagcg ctggggctgg gcaaagtcaa atcgcagagc 3180 atctatcacc accaacacga gccgagagaa tcgggaagcc atccagcagg ccccgggttc 3240 ccctcggccc ccccatggca gggctccagg gcctgggggc tcttgacagc tgctatggtt 3300 ggtgagctcc caacgggtga gcaggaagcc actggtgaag agagcaatgc cggcgtagaa 3360 gaggaagctc acccaggcca ggaaaagcag cactgaaatc ttctgcatcc tggcaaagaa 3420 ccagtagata ttctagtctc tcagtacaaa gccctgttag tatcacttcc tcttggaagc 3480 tctcctgaag ataaagagtc ccatagccaa cccaatgtag tgttcctctc catcagttac 3540 atgagagttt ctgaaagtga ggtgtgcaga ctaccagcat caacctggag tgggtgtttt 3600 aaaagtgctg actttcagac ttccttgatg gtccagtgct taagaatcca cgtgtcaaca 3660 caggggacac gggtgggatc cctggtcggg ggagattcca catacccgtg caccacaact 3720 cctgagcctg aactctagag cccagtgctc cctaacgaga gaagccacca caatgagacc 3780 aggcactgca aggaagggca gcccctactc actccaagga gagaaagccc acgcaaagca 3840 aggaagaccc agggcagcca aaagtaaaat taaataaaaa acgtcacccg agatccccgg 3900 aatcaggatc tttgagggtg gagcataaga atttgcaaga gatcttaatg atggaaaaca 3960 caatccaggg gaaaacttat tccaagtggt agactgcttt ccgacagccc gcttctcctc 4020 tctgctcgcc aatttcaaca cccctggggt ggccaaggct cacagccgca ggggaatcca 4080 ggccaggctg acggcgccgc ctggcgggga cttaggagtc gtactccgct tccggacacc 4140 caggatagcc agacgaaaag cgcgacccgg ctcagcaggg cagaagcgcg aggtcttaag 4200 gcggttgggc ctcgctggga cccagacgtc cagatgactc tgcctcctcc gatggctgtc 4260 cggcctccgg ctggacacct tgaccgggta ctgggcccgc cagacttcaa gctctgtgag 4320 tggggtagac gggtccctaa tttctgggaa aagcaagagt aagggtgttt ggggagcccc 4380 tg 4382 // ID KA520255; SV 1; linear; mRNA; TSA; MAM; 646 BP. XX AC KA520255; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27303 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-646 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-646 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; 6de7c6176cb59ff8e9d3b6fc444e0950. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..646 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 646 BP; 80 A; 250 C; 190 G; 126 T; 0 other; tggatacctg gtagaccccg ggggatgtcg ccccccccgc tgggctgtag cccatgagca 60 ggccaccctg gagggccccc tgcctgactg caggctgcga agggccagcc tctggctctg 120 aggatggaga cgtctccgcc tgcacgtggc gcatgaagcc ccgccttcag tcagggggga 180 ccccccccac agcctttatg ctgggcttgg gctggggggc ctggggacat agaggcctta 240 agcctagctg tgtgttccct cttcctggct gatgtcttgc tctcctagct tgcagtctgg 300 tccatgcctg ctgcactggc aaggtgactg ccaccattcc gtgcagctcc taggctcagc 360 tggaccctga tttggctccg ccgcggcgcc gctgctccgg gcccttcagt ccaccggtcc 420 ctcccctcga atgcccggtc ctccccgcct cgggccccca acccagacaa agggtggctc 480 aggctgagtc ctgctctgct aggttcttct ctgtcagttc gtgtgcaaca ctagcgggcc 540 ctggcgcccg cagcccccaa gccgctgcgg cgcccccccc cgcgactgtc cctccccgtg 600 gccgccccgg ctctgcgaag ccgactccgc tgcccctctg actcac 646 // ID KA520256; SV 1; linear; mRNA; TSA; MAM; 1130 BP. XX AC KA520256; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27304 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-1130 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-1130 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; fcaabb46c73bb8d028de6667c4d1fd4c. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..1130 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 1130 BP; 218 A; 346 C; 315 G; 251 T; 0 other; agtgctgctt ccctgtcccc cacctccctg cccaagccca gctccattaa ctcagcttga 60 ctcgatcaag ttcctcatca agactcgcat ctgtgctccg gacatctctg ctgctcctgc 120 tggagactga gtcctgggct tccggtaccg gggctttggt gagggcccca tacacaccca 180 tggcctgagg agaccatact ggtgacgtcg ccggggttgg agggcagcag gatggtgttg 240 gagtccttgg ccagtttaga gaacgcgctg acgtactgct cggccacagt cagcgaagct 300 gctgcatctc cgtttcagag ctgcagccag gatgcgaata gcttcagctt tagccttggc 360 cttggccaga actgcactgg cctctcctgc ttgatttatt tgttcagcct tttctgcctc 420 ggaggccagg atctgtgcct gcttctttcc ctctgccacg ttgatggctg actctcgagt 480 cccctcagac tctagaactg tggcccgttt ccgccgctct gcttccacct gcatggactc 540 cttcacccgg ggtggtacat ggatatcctt gatctcataa cggaggcagc ggatgcccca 600 gcagtcagca gcctggttga tggcatccac gatgctagca ttgagggact cccgctcccg 660 gaagaccttt gtccagagag agtttgccga gctctgatct catggttgtc tgagctagct 720 gggtgacagc atactcaggg tcttccacac catagcttgc cttgggtcca tgatgcggag 780 gtaaaggact ccatcaattt gcagagttac attgtcaaca gcagactgct caggcacgtt 840 gatgacaatt tccttgagac tctgcacata tcggatccgg tctaacacag ggatgaggat 900 attcaagcca ggggaagaga tccggtggaa tcggcccatt cgctccacca cccaggcctc 960 ctgctgtggc acaaacagga ccacggtgtt tcggggcaat ccagaggagg cgcggcgcgg 1020 agcgcgggca gaagcctgga cggagcccaa gggccccagt tccccgcgcc gcgcgcgcca 1080 gcatttccca cggccacagg gacctccgga accaacgaga cgcgtagcag 1130 // ID KA520257; SV 1; linear; mRNA; TSA; MAM; 519 BP. XX AC KA520257; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27305 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-519 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-519 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; 8f676ba212d9a5bd3fc7d1c4a240bf64. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..519 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 519 BP; 120 A; 160 C; 143 G; 96 T; 0 other; cgacaaggga agagagaact taaatgccag gtacctacac caggagctgc ttctggaggg 60 tgctgagacc cagagcatcc tgggtgactg gttgctgagc acaggaaagc tggagccgaa 120 gaggaagcga gcacggggca cataaccagt gaagcctggg gggtgggaac actcagtcgg 180 taccttctgg gcacaccccc aggcctttgg ttgttaccca catcctctca cctgacatga 240 agaacttgcg agggtctctg tcatccatgg aataggggga agccttgtga ggaaggagaa 300 acggcaaaca aattcagccc ctgggttata acacaagctc ccagggcaat tgagctggtg 360 gtctggccct gtacccacag ccagcctaca catggccacc acaggcctgg ccacacagag 420 gtaagggctc cccgctccca ccactggact ctgcctcagc cttctcatct cacttgttcc 480 gcctcctgcc ccagctccgg ctccttttcc gcctccagc 519 // ID KA520258; SV 1; linear; mRNA; TSA; MAM; 424 BP. XX AC KA520258; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27306 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-424 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-424 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; 5809f1cbfab55b1d447266c8184e53e3. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..424 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 424 BP; 84 A; 113 C; 145 G; 82 T; 0 other; gagtaaaacc attcagagcc tcagcccaga cctggctgca gttcttggca aagatgaact 60 gtgcctgtgg cacaaaacct aggtgggcag ggggcaagga agatgcatta gagcgtgggg 120 cccgtgttct gggatggggg cccctgttca tacctgtgtc cgaacctgtg tacccgggga 180 ccatgctgga gctgagcctt tcgtgtccac gcctgacagg caggcttctc ctgcaaggct 240 cgggggatct tggaggctga atgggaggca gaagtgtgcg gtgggccggg ggccaggcga 300 ggccaggaga gccgcgaagt agctgcccag tcatctgtcc gtaggtctgg cccatgctga 360 accgaagtag tgggcagtgt ccagtgtacc tgcagcacaa gtctcacccg ttcacctcga 420 gtcc 424 // ID KA520259; SV 1; linear; mRNA; TSA; MAM; 6067 BP. XX AC KA520259; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27307 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-6067 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-6067 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; 82d897e4a293bc36a4d9c28295d5cd1e. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..6067 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 6067 BP; 1585 A; 1487 C; 1678 G; 1317 T; 0 other; gggagggagt cccgatcgcc cttacctccc agcgatggcg ccgtggtgcc gcgcccagtc 60 ccccgcctgc cggccggtag tccccacgat cgggagcccg ctcagacggt gaaaattgga 120 gcgggtcaga cggagcagcg ggacgctacg gggaccatga ggagcggcga gacccgtggg 180 gtcgatagcg ggaactgccg cggcacctgc taagaggaga gagggagcgg cggcggggcg 240 ggggcgcggc ggaggatcgc cggcggctcg gccatgtcgc tgctctgcgt gcgcggccaa 300 attccaggga tcaccagaac acatatgtga ccctgaaagt gcaaaatgtg aagagtacaa 360 ctgtagcagt tcgtggcgat caaccttcct gggaacaaga ttttatgttg tcgcctggac 420 ctgggtctca gtgtggaagt atggaacaaa ggactgatct gggacaccat ggtggggact 480 gtgtggattg cactgaagac gattcgtcag tcggatgagg gcagtcagtg gggagtggtc 540 cacgttggag gcagagacat taatgaaaga tgatgaaatc tgtggaacta aaaacccaac 600 tccccataaa attttgcttg atacaagatt tgagttgcct tttggaagag gaagctagat 660 attggaccta cagattggag caaatgaatg ccttgggacc tgacaatgag tcaagaagaa 720 agccagagga agcaattgcc tactgctgcc gcccagtgtt gatcctgaca gtgccgtgga 780 tgaccgagat agtgattatc gcagtgagac cagcaatagc atcccgcctc cttaccatac 840 aactgcccag cccaacgctt ctgtgcacca gttcccagtg cctgtgcgat tgccgcagca 900 gctgctgctt cagggcagtt cccgggactc ttgcaatgac tctgtgcaaa gttatgacct 960 tgattatcca gagcggcggg ccctcaggca gtagtaggta tggctcctcc tgtaacgtga 1020 gtcaaggaag ctctcagtta agtgaactgg accagtgtca tgaacaagat gatgaccgtc 1080 gggagaggga ctccattcat tcctgccaca gctccagcag cctctccaga gatggacaag 1140 taggttttgg agaacaagag aaagccttgg aggtgacagg tgaagaggag aaggggggag 1200 tgtgtgaacc caaggagatg aaagaagatg ccacagccca tccaccccca gatatggtgc 1260 tacacaaaga ccttgtccga ggcccccagg agagaggaga ctgcatcttc gccatttacc 1320 caagccagag cgcactggat ccgagcagtt accaaggttc gactccagct gcaggagtgg 1380 tggtgatccc tgtttgcccc agtggcttcc agaagggagg gctctatggc attgacagca 1440 tgccggatct acgcagaaag aagccactgc cgcttgtcag tgacctgcca gtcccggaaa 1500 gcaggcatta cttctgcaat ggctacacgc acctctctca aagatgaaga gctgtgtgta 1560 taagaaaacc ctgcaggcct taatctatcc catctcgtgc accacacccc acaactttga 1620 ggtgtggtca gccaccaccc cgacctactg ctatgagtgt gaaggcctgc tctggggcat 1680 tgcccggcag ggcatgcgct gcagcgagtg tggagtcaag tgccatgaga agtgccagga 1740 cctactcaat gctgactgcc tgcagcgggg aaaagagctc taaacatgga gcggaggacc 1800 ggacccagaa catcatcatg gccatgaagg accgcatgaa gatccgagag cggaataagc 1860 cagagatctt tgaagttatc cgggatgtct tcaatgtgag caaagtcgcc catgtgcaac 1920 aaatgaaaac agtgaagcag agtgtgttgg atggcacctc caaatggtca gccaaaatca 1980 ccatcactgt gggcccaggg cctacaagcc aaggacaaga caggatccag tgacccttat 2040 gtgactgtgc aagtgggcaa aaccaagaag cgtaccaaga ccatttttgg aaacctgaat 2100 cctgtttggg aggagaagtt ccatttacaa ctcttctgac cgcattaagg tacgtgtgtg 2160 ggatgaggat gatgacatca agtcacgagt aaagcagcgg ctaaagcgag agtctgatga 2220 tttcctcggc caaaccatca ttgaggttcg aacactgagt ggcgaaatgg acgtctggta 2280 caacttggac agacaagtca gccgtctcgg gggccatccg actgcaaatc agcgtggaga 2340 tcaagggaga ggagaaggta gccccatatc atgtgcagta cacatgtctc catgagccat 2400 tacctcacgg acattcaggg cagcggagga gtccagatcc ctgaggctcg aggagatgat 2460 gcatggaagg tgtactttga tgagactgcc caggaaattg tggatgaatt tgccatgcgc 2520 tatggcattg agtccatata tcaggccatg acgtaaggct ccgtgtttgt catccaagta 2580 catgtgtcct ggcgtgccag cagtgatgag caccttactg gccaacatca atgcctacta 2640 tgcccacaca actgcctcca ccaatgtctc tgcatctgat cgttttgcag cctccaactt 2700 tgggatttgt gaaactcctg gaccagctac acaactcact gaggattgac ctctctacct 2760 acaggccctg ctgggagccc tgagcgactt caggacttaa agtccacagt ggatttgctg 2820 accagcatta ctttcttccg aatgaagact tcagagccct ccaagagcca gccaggtagt 2880 aaaagattgt gtgaaggcct gtttgaactc aacatatgag tatatcttca acaactgcca 2940 tgacttgtac agccgccagt accagctggc tgcctccaga agaccagggg cccagcatta 3000 ggaacctgga tttctggccc aaactcatca cactcattgt gtcaatcata gaggaagata 3060 agaattccta caccctcgtt ctgaaccaag gagttgaatg tgggaaaagt cagcgcagaa 3120 gtgatgtggc aactctttgc ccaagacatg aaatatgcac tggaggaaag acaggctgtg 3180 taagagtgct gactacatga acctgcactt caaggtgaag tggctccaca atgaatacgt 3240 gcgggatctg cctgccctcc agggccaggt gcccgaatac ccagcgagca gtttgtcctg 3300 cagtggctgg atgagaatga ggatgtgtcc ttggaattcc tgcgtggggc cttggaacga 3360 gataagaagg atggggacat cagagcacgc gctcttctct tgctctgtgg tggacgtctt 3420 cacacagctc aatcagagct ttgagatcat ccggaaattg gaatgcccag accccaacat 3480 ccttgcccac tacatgagga gattttctaa ggaaggtgct catggaatat gcagacatct 3540 tatcaaagaa cttcccagct tactgcacaa aggagaaaat gcctgatgaa caacatgcag 3600 cagctgaggg tgcagctgga gaagatgttt gaggccatgg gaggcaagga gctggtgaaa 3660 ctgcagacag tctaaaggag cttcaggtga aactgaatac agttttggat gagctcagca 3720 tggtgtttgg aaacagttgc ggattgatga gtgcgtgcga caaatggctg acatcctgag 3780 ccaggtgcga ggcccaggga acgcgtcccc caatgcacgg gcctcggtga ctcaggatgc 3840 agacagtgta ctccggcctc tcatggactt cctggatggc aactttttgc cactgtgtgt 3900 gagaagacgg tcctgaagcg ggtactgaag gaactctggc gggtggtaat gaacacaatg 3960 gaaaagatga ttgttctgcc tccacttact gaccagacgg gcagctgatc ttcactgctg 4020 ccaaggagct gagccaactt tccaaactca agggtgcgag aggaaacacg aaatctgact 4080 ccaaagcagt gtgccgtcct tgacctcgcc ctggacacca tcaagctcac gccggaggca 4140 atgggctgaa gaaaaccttc ctggagaaga gcccagatct gcagtccctg cgctatgccc 4200 tatctctcta cacacagacc acagacaccc tcatcaagac ctttgtgcgc tcacagactg 4260 cccagggtgg atgatcctgt gggagaagtc tctattcagg tggacttgtt tacacatcct 4320 ggaactgggg agcacaaggt cacagtgaaa gtgggccaat gacctcaagt ggcagacagc 4380 aggtatgttc cggccctttg tcgaagtcac catggttggc cctcaccaaa gtgataaaaa 4440 gaggaagttc acaaccaagt caaaaagtaa caactgggct cccaagtaca acgagacgtt 4500 tcacttgtaa gttatgaaat gaagaggggc cagaagccta tgagttgcag atatgcgtga 4560 aggattactg ctttgcccgg gaggaccgtg tgttggggct ggctgtaatg cctctgaggg 4620 atgtggcagc caagggcagc tgtgcttgct ggtgcccctt gggccggaag atccacatgg 4680 atgagacagg cgtgaccatt ctccggattc tgtctcagag gagcaatgac gaagtggccc 4740 gggagtttgt gaagctcaaa tcggagtctc gttccatgga ggaggggagc tgagcaccca 4800 ggctcctgtg ccgaccagag ggcaccagtt ccacaagtca gggataatag gagttactac 4860 atagtcatct tagatcctca cagtcaagag gctgattcat tcagttagga aagtttaagg 4920 gaaaatctag ggtggtgtga gtgtggcttt tcacagaaag ggtctgaatc cctgaccagc 4980 gggtctgtgg tgctaggggc tgggctgtgg ggcttaccac acagggagat ttttcatgga 5040 ggggcagaca tttctgagag tgtcagccat tcttggtaga gatccttcca ctcccacacc 5100 ccttttctct cccactccat accacaccta atccagttag atccatatat accaatcatt 5160 agaggaacat gtttagaggg cctggagctt gtgcctaatt aggtaagtaa tccgttgagt 5220 ctacaggtat tgctgagccc tgtagtctga actggagtat ggccagggca ggaacacaca 5280 gaatagaatg cagaccatcc attgagcaga acccagcagt gtagagtagc tcaagtgagc 5340 acagggcatt gagactgaac aagatatctt tcagcaatga gctatgctaa tcccttcccc 5400 cagattagct ctcatgagta gaaccaggtt cacatggtgc ttcagaggcc tgagcagaat 5460 ttctttggaa cccaagcacc aggggccacc tgcccaggag tctccctacc tcactccttt 5520 aggaagggga gtgatgcttc aggacatgaa aggctcttaa gtatacatat ctgagagcta 5580 gctgaagaat ccaggagaga gggcttcttc atagataagc cctgaacaaa gccaaaaatt 5640 ctggaaatca gtctagaagg agtcctgttc acctatggcc actgcctttt ggtggtcctt 5700 ccccttgcag acagaatcta gcctttgtcc tcactccctt tcatttaggt cagctgctgt 5760 ccccctcata aaccgttcaa ctctacagaa ggaacttaga ctgtgatccc tctgtacagg 5820 ctagattggg gggggagcag agggggagag gggctcaaca ctcccaggga gtcatgtgga 5880 cttcccaggc ccttgcccag agatgtgaca tgatccttca gtatcctcat agcagcctct 5940 tggacttctt gaggactctg cattagccat tacatgaaac aagaaacgaa gcatctttgc 6000 tgttttaaat tgtatgtgcc attgttacaa gaaattattg actagtctgt aataaattat 6060 cttgtag 6067 // ID KA520260; SV 1; linear; mRNA; TSA; MAM; 5219 BP. XX AC KA520260; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27309 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-5219 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-5219 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; 3757e746c94019bf57e79c9e09d3e77c. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..5219 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 5219 BP; 1021 A; 1711 C; 1585 G; 902 T; 0 other; cactgcgcgt gactcgcggc gctcaatgca gagggagcca ggaggtgggc gagcacccgc 60 actggcccag agggccgaac tacgggccat cccaaggggc ggcatgaggg caattcagat 120 cggaccatcg gcgccacagc tgcaggggag gaccgggcgt taccaagctg tctgagagaa 180 gggggacgac tgcttgtccc ggctgcaacg cgacccctgc agggcgcgag acgtgccgct 240 gcctgcgcga taggaccacg ccgaggcgag aaaccagctc tcctgatgaa atgtgttctg 300 ccccactggg ctccaggggc agtgctgttg atgcccttgt tcgaactttc cagaatggat 360 agtcccccaa agctgactgg agagaccctc atcgtccacc acatccccct ggtgcactgc 420 caagtcccag acaggcagtg ctgtggaggg ggaggtggag gtagcgggag cacaagaccc 480 aaccccttct gcccaccaga gctgggcatc acccagcctg atcaggacct cggacaagcc 540 gactctctgc tgtacagcag cctgcagtct gctccagggg gctctacacg gtctgctgat 600 agtgccaaga gcaggggtcg ggatggaaga ggccccgggg cccaggccga gccaggactt 660 ggtgacctat atgaggatag catcagtgac agtgccgccc agcagtcctt ccacctgcac 720 ggggctggcc agcccacctt ccatctctcc tctttccagc tgccaccgcc tggccccaga 780 gtgggcaggc catggggggc agcgcgtagc cgagccggag tggtggaagg gcaagaacag 840 gagccagtga ctgtcttgtg ccccgcattg cagcactggc cgctgctgcc ggccagagcc 900 ggaagctgaa accatggagc tggatgagtg tggggggccc ggtgggagtg gcagcggggg 960 tggagccagt gacacctctg gcttttcctt tgaccaggaa tggaagctca gttccgatga 1020 atccccaagg aaccccagat gctcaggctc aggcacccag cactgccgct gcagtagcac 1080 ctccagtcag tccgaggcgg ctgaccagtc catgggctat gtgagcgact cctcctgcaa 1140 cagctcggac ggcgtgctgg tcaccttcag caccctctac aacaaaatgc acggcaactc 1200 ccgtgccaac ctcaactctg ccccacaatc ctgcagcgac tcttccttct acagccactc 1260 ggaccctggc gccttctacc tggacctgca gccctcccca gctgagtcga agatgtcttg 1320 tgagtcccac caccctgaca gcggaggaag ggaaggtggc tatggttgtc ctcatgcctc 1380 atctcctgag cttgatgcca actgcaactc ctaccgcccg tactgtgagc cctgcccagc 1440 tgtggctgac ctcacagcct gcttccagag ccaggcccgt cttgttgtgg ccacacagaa 1500 ctactataaa cttgtcacct gtgacctgtc ctcccagtcc tccccaagcc cagctggctc 1560 ttctgtcacc agctgctcgg aggaacacac caagatcagt cctgcccctg gccctggccc 1620 agaccctggc cctagccagc cctctgagta ttacctgttc cagaagccgg aagtccagcc 1680 agaggaacaa gaagcagtgg gctctgaagt ggaagcggag actcccatgg gccgcactgt 1740 gatcgagggg caagtgtaca ccaacacttc accccccaac ctcagcactg gacgtcagcg 1800 ctctcgaagc tatgaccgca gcctagagcg cagccctcct gtccgcttgg gctctctgga 1860 acgcatgttg agttgcccag tgcgcctcag tgagggcccc accgccatta ctgggcctag 1920 ttccccacct cggcgggtca cctcctttgc cgaacttgcc aagggccgga agaaagctgc 1980 aggctctggc tcccctccac tgcgagcaag cactggggac tcctctcagg agttctcact 2040 catccaagaa gcccagcaag acagggtggg ccccccagat gagggcactc actgtagcca 2100 tagtctccca cccatgccct tggagccagg catggacctg gttggcccag agccctggtc 2160 cacccaggtc tgtcagggct cccagtccag tgagatgcca cccgctggcc tcagagctgc 2220 tgggcagggg cccctggccc agctgatgga tccagggcct gctctaccag ggagcccagc 2280 caacagccat acccagaggg acgcaagagc taaagctgac ggtggtgctg agagccgacc 2340 ggtccttcgc tacagcaagg agcagaggcc aaccacgctg cccatccagc cgttcgtgtt 2400 ccagcaccac ttccccaagc agctggccaa ggcccgggcc ctgcacagcc tttcccagct 2460 ctacagcctc tcgggctgca gccgtgcacc gcagcctgcc cccgcagctg cccccactgc 2520 tcaaggccca ggcccagctc cttcaggaga gccacaggtg cccacccaca ggggtgccag 2580 gaaagccagg cctgagccag agacctcgcg gccatcaccc ctgggcagct actcccccat 2640 ccggagtact ggcccctttg ggcccagcac cgactcttca gcctccactt cgtgctcccc 2700 tctcccagag cagcccacct ccatggggcc tttcctgtcc tcctgctgtc cggcctgccg 2760 tctcccacca gccgcagaag gaggatccga agatactgac cttggctgag taccggctcc 2820 atgggacagg aagcttgcct cctctgggct cctggagatc tagcctcggc cgagtggaga 2880 gcctggcccg gggaggtggc gagggcagca tggcttccag gcccagtaat gaccacctat 2940 cccctcaagc actcaagtgg cgagaataca ggaggaagaa ccctctaggg ccccctggtt 3000 tgtcagggag cctagaccga aggccacagg atgctcggct ggcccgaagg aaccccatct 3060 ttgagttccc cggctccctc ggtgctgctg gccatctgaa ctgccggctg aatgaagtag 3120 tgaagccgtt accactaacc tgccctgact tccaagaccc tttctccttg actgagaagc 3180 cccctgctga gttttgcctg tccccagatg gcagctcaga ggctgtatcc attgatgtgc 3240 ttcagaaaaa agtggtgaaa gctgtcaaca ctgctgtgga cctcattgtg gcccattttg 3300 gcacaagccg ggatcccggg gtcaagaagc tggggaacag ttctgtgagc cccaatgtgg 3360 gtcacctggt tctgaagtac ctgtgccctg cggtgcgggc ggtgttggag gacggactca 3420 agtcttttgt gctggacgtc atcattgggc aacgtaagaa cacaccgtgg agtgtggtgg 3480 aggcctccac acagctaggc atccaccaag gtcttgcacg gcctgtacaa caaagtcagc 3540 cagttcccag agctcaccag tcacaccatg cgcttcaacg ccttcatcct cggcctgctc 3600 aaccggtccc tggagttctg gtttaatcac ctctacaacc acgaagtcat ccagacccac 3660 taccagccgt ggggcttcct gaatgcagct catacggtgt gccctggcct cttcgaggag 3720 ctgctgctgc tgctccaacc cttggccctc ctgcccttca gcctagacct gctgttccag 3780 caccggctgc tgcagagcgg ccagcagcag cggcagcaca aggaattgct gcgagtgtcc 3840 caagatctgc tgctgtccgc ccactcgacc ctgcagttgg cccgctcccg aggccaggat 3900 ggccccggag atgtggacag ggtggccccc ggggagcggg tgaagggtgt gggtgcccca 3960 gaaggtggag aagaggagga ggaagaggag gagacagagg cggccgggag ctcagggcgc 4020 ggcaggtggg cccgaagtgg gcaggctggc tggtggtacc agctcatgca gagctcccag 4080 gtctacatcg atggctccag cgagggctct aggttccccc gaggtagcag cactggtagc 4140 agcagtgaga aaaagaaagg ggcaggaggc gtggggccac ccccccgaga gggagtcgtg 4200 gagggagcgg aggcctgccc tgcccctgag gaggccctcg gccgggagag gggctggccc 4260 ttctggatgg ggagcccccc tgattctgta ctggcggagc tgaggcggag ccgggagagg 4320 gaggggtccg ctgcccccac agcagaaaat gaggaaggag catctgaacc ttcaccaggg 4380 ggcatcaagt ggggacacct ctttgggtcc cggaaggctc agcgggaggc ccgacccaca 4440 aataggccct cggactggct cagcctggac aagtctgtgt tccagctcat ggcacaaaca 4500 gtgggtgccc gccgggagcc agagcccaag gacagtgtgc aggagccacc ctctccaggc 4560 ctgccttcca agcctccatg ggggaaggcg ctgtgccacc atctggccac gggccctgga 4620 cagctgagct tccgcaaggg agacacccta cgggtgctgg ggccagctgg ggcggactgg 4680 ctgcgctgca gccgcggccc tgacaccggc ctggtgcccc tggcctacgt gactctgacc 4740 ccaactccaa gtccaagccc tggaagcagc cagaactgag gccctgtgca tgctggcggc 4800 ctcagggacc ctcacagccc ccaggctcat cgcctaagag cgcttcccaa gccgtctggc 4860 ctggttacag agagtagacc gcgagctggg ggctgcatat ccctgtgctc agtattaatt 4920 actccccatt acctgtccca gtgaccttgt ccggacctcc ccccaggaga ggagggaagg 4980 gatgcagcac tgggctgcca gagtctcccc agccaatctg gccagtcctc ccatgggtgc 5040 agacaggtac ttccctgtgg agggaggtga ccagaaggcc cacttgcagg gttccctcgg 5100 ccaggtggtg aggaggttgg gtgacagtat tggggccagt tccctaagcc cccagctgta 5160 aataggctgt ggccagtgcc tggcggtcaa ggagggagga ggagcccagg cttctgttt 5219 // ID KA520261; SV 1; linear; mRNA; TSA; MAM; 2461 BP. XX AC KA520261; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27310 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-2461 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-2461 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; 3ab0ef50869ff7a927c74458c30c6d13. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..2461 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 2461 BP; 446 A; 833 C; 747 G; 435 T; 0 other; gcccaggatc ttcggcgaat cttctattct ctagagcggg agcgggagcg ggaccccggg 60 cgcccctgat ccgtctgggc ccgctcccat ggcgagcgcg gcctgcccgg ggcccgggga 120 ccctgccatg tgaggcaggc cccggcccgg gggccccgcc atggccgggg aacggccccc 180 actacggggc cctgggcccg ggcctggaga ggcgccgggg gaggggcccc cggggccggc 240 gggccggggc cgcccctcct cctaccgagc tctccgcagc gccgtgtcca gcctggcacg 300 cgtggacgat ttccactgcg ccgagaagat cggggccggc ttcttctctg aggtctacaa 360 gcggcaccga cagtcagggc aagtcatggt gctgaaaatg aacaggctcc ccagtaaccg 420 gggaaacacg ctacgggagg tgcagctgat gaaccggctt cggcacccca acatcctaag 480 catgggggtc tgcgtgcacc aagggcagct gcacgctctt acagaggtga atgaacgggg 540 ggaccctgga acagctgctc agctcccccg agcccctatc ctggcctgtc aggctccgcc 600 tggctttgga cattgcccgt ggcctgcggt acctgcatgc caaaggagta ttccaccgag 660 acctcacatc caaggagtgc tctgagggac tgagagccat tctgtttaaa ccaagagatg 720 ggtgatgctg caagattggg gtacattgga gaactgggag atcagaggaa gatggggtta 780 ttctggaatg acaggtcttt gaggtgcata gtgggagatc agagaacaga aggtgatggg 840 tatgcggggg tgctatatgt atatgtcaga actgtctgat ccgacgggaa gaccgaggct 900 tcacagctgt tgtgggtgac ttcgggctgg ctgaaaagat tcctgtgtat aggggagggg 960 aggggcaagg aaggagccgt tggctgtggt gggttccccg tactggatgg ctccagaggt 1020 gttgcgaggc gagctgtatg atgagaaggc gatgtctttg cctttgggat tgtcctctgt 1080 gagctcatcg cacgagtacc tgcagaccct gactacctac cccggaccga ggatttgggc 1140 tggatgtgcc tgctttcagg gccctggtag ggggtgactg cccgctgcct ttcctgctcc 1200 tggccatcca ctgctgcggt ggaacctcgc actcgcgctc ccttcactga aatcacccag 1260 cacctggagt ggatcctgga gcagctgcct gagacagcct ccctcccccg ggtccccctg 1320 acacgtggtc aggctgttcc aagagggggt ccctctgcca cactccccag gccagacccc 1380 cggctctccc gaagccggtc agacctcttc ctacccccac cgccagaatc cccccccaac 1440 tggggggaca atctgactcg agtcaacccc ttttcactac gggaagacct cagaggtggc 1500 aagatcaagc tcctggacac acccatcaag ccagtcgccc ctctacccct tgtacctcca 1560 tcgctactgc cctccaccca gctgcccctg gtgaccactc cagagacctt ggtccagcct 1620 gggacacctg tccgccgctg ccgctcgcta ccgtcatccc ctgagcttcc ccggcggatg 1680 gagacagcac tgccaggtcc tggccctcct gctgtaggcc cctcagccga agagcagatg 1740 gagtgtgagg gcagcagccc tgagccagaa cccccaagac cagccccgca gctgcccctg 1800 gccatggccg tggccacaga caacttcatc agcacctgtt cttcggcctc ccagccctgg 1860 tcccctagat caggacctcc ccttaacaac aaccccccag ctgtggtggt gaactccccg 1920 caaggctggg caggggagcc ctggaaccgg gcccagcata gtctgccccg cgcagcagcc 1980 ctggagcgga cagaaccctc gccgccccct tcagctcccc gggagcctga ggaggggctg 2040 ccctgcccag gctgctgcct cggccccttc agctttggct tcctgtccat gtgcccccgc 2100 cccgcaccag ctgtggcccg ctaccgcaac ctgaactgtg aggcgggcag tctcctctgc 2160 caccgagggc accacgccaa gccacccacc cccagcctgc agctgcccgg ggcacgctct 2220 tagcagtggg gcctgtggtc tctggcctcc accttggcct tcaggatgcc ccgtgaggat 2280 ggagagcaca cgctggaccg cgccagccct gcacaggctg agcagctctt gcccctgtac 2340 aggggaggct caacatggac gcgaggaaca gaacatttcc tttccaaccc ctgggcttgc 2400 tctcccgtgg ggatcactga accagacaat gcattgctga cacacgagac taacacgtgc 2460 a 2461 // ID KA520262; SV 1; linear; mRNA; TSA; MAM; 706 BP. XX AC KA520262; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27311 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-706 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-706 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; 0c4691b6627830ee14ac2c89137bb276. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..706 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 706 BP; 134 A; 216 C; 221 G; 135 T; 0 other; tgcctgtctt cagggggtgg ttgggaaaca gtcatggccc cagacgggat agcaggaacc 60 aatgcaacgg cccgccggga tggctgttgg cataggcctg gtctggaaag gaagctcggg 120 ctctgcgccc ctgggcacac actgaggcgt agagctctgg ctcagggtct gaggcctggg 180 gctttggctc ggagtccagc agcaggggct tccagggctg gggactcggc cctgaggagg 240 ccgcagctgc aggctgggat agcacatcac ctcctctgca gcggcagggc ctccaggggc 300 tgaatcctgt gggtctggcc ctggttcctg agacagccgt cctggtctgc agataatgca 360 ggttcccata cagagggacg tcttccacag actccccaga gcaatgtcct ggctggctcc 420 tgctccggcc actggtccac tggaacaagt gcacagccag tgagatgagg agcagcaggg 480 tcacagcccc taagagggcc cacagccccc accccttggt caaagagggg attctcagta 540 gctcatcagt gggatgatcc gtgcaattgc agagtctgct ctggcctgct gtagtcatcc 600 tggcctgagc caaaggatca gcctgattta tgatcggaca gctgtggcag ccccctttac 660 tcccacccct ctctgggcct gacccccaca gctcagcatc tccaat 706 // ID KA520263; SV 1; linear; mRNA; TSA; MAM; 904 BP. XX AC KA520263; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27312 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-904 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-904 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; 4d5650ea2ad779b966e06384995b8549. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..904 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 904 BP; 198 A; 273 C; 277 G; 156 T; 0 other; tgggggacgc gcctgcgtgc gcgtgcaccg gtgcgtccga caacgccggc gtctcccgcg 60 ttctcccgtg ttggcctgct atggcgagcg tggtgtcgct cgctggtacg ctggggctgc 120 tacttgtgtc tgcgctgccc gaggtgctcg gagaccgccg cagccccgac cgccgggcac 180 acccaggcga cgccggccag gtcggccctg cggccgcgga accccggcgg cagtcgccgc 240 cgtccaagaa ccagcgcgag cgggctccgt ccggggcgct gcccttgggg gcgctgtaca 300 ccgcggccgc cgtggctttt gtgctgtaca agtgtttgca gaaagatgag gctgctgttc 360 tccaagagga ggcaggcaag aaggattcat tgcagtcaga acaccttgcg cagctgacac 420 aacagcttgt ccagacagag caacacctga acagtctgat ggcccagctg gacccccttt 480 ttgagcggta agactaccct ggctggagcc cagcaggagc ttctgcacat gaagctacag 540 accatccacc agctgttaca agacagcaaa ccgaacaagg gtgtggaggt tccagaacca 600 ggtacccagc ataccctttc ccgaggactt ctgtatagag gaggacgagg aagagactgg 660 tgacaatcag gcctgggagg agcccctaaa ttggaacaca gggacaagga acctaactcc 720 tcccagggaa atggagccca cgctaaggag aagatgtagg aaatctgcag cacagggcct 780 cagtcacagc ccccagtgga aagaaggaaa aacagtggat ggtttagtaa aacagagtct 840 gttcctgtga ctggatgctc ctgtgtgctt tttccattcc agctggacac acacacccac 900 cccc 904 // ID KA520264; SV 1; linear; mRNA; TSA; MAM; 1201 BP. XX AC KA520264; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27313 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-1201 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-1201 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; 939195bda4c071f648a6945622f78382. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..1201 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 1201 BP; 156 A; 402 C; 300 G; 343 T; 0 other; taacatcagt tttattggtt gggttggcag ctagcctggc tgggggcagg gccagccctc 60 agaggttgtt gagctccagc agtgtctggt caagggtctg gtggatctcc acgttctcct 120 ccttggcact ggccaaggtc tctttccagg tcatcgatgg ttttctccaa ctttgccacc 180 gacctttcag caaactctgc tcgggtctca gccttccttt agcttctcct ccagcagttt 240 gatctcctct tcatatttat cttctttggt ggaatatcct cctctgaggc catcagggac 300 ttgagggcct gatccatggt tcgaagctcc tcctccagct gcctggctcg gcttctcagc 360 cacctcagct ctctcttctg agcgctccag ctctccttcc aggatcacca gtttcctggc 420 cacctttcct catatttgcg gtccgaatcc tcagcgatgt gcttggcctc cttcagctgc 480 atctcctgca gctccatctt ttcctcatcc ttcatagctc ggttttcgat gaccttcatt 540 cctctctcct ctctcgctct catcagctgc cttctcagcc tcctccagct tctgcagggc 600 tgtagccaga cgctcctgtg cccggtccag ctcctcctct accagctgaa tgcggcggtt 660 cagggaggcc acatctgcct cagcgttctc gctctcatca gctgccttct cagcctcctc 720 cagcttctgc agggctgtag ccagacgctc ctgtgcccgg tccagctcct cctctaccag 780 ctgaatgcgg cggttcaggg aggccacatc tgcctcagcg tctcagtggc tttcttctca 840 gcctgctcca gtttctcctg ggcatccttc actgattcag aatacttttc cacctcgtcc 900 tccgtccctt ttagcttttt ctggagggcc tgctgctcct cttccagctt gcttgcttgc 960 agcggtcctc agcttgcttc ttgtcggcct cggcctgctc tgcgcggtcg atggcattct 1020 ccttgtccag ttttaacatc tgcatcttct tcttgatggc gtccatggtt gcggtggggg 1080 acgggccggc cggcgggcag tgcggaccgg gagaactggg ctggcctctc ggactgggcg 1140 cacgggtggc gggcgaggag caccaagcgg gactgggatg tccctgccgc gcgggcgcct 1200 a 1201 // ID KA520265; SV 1; linear; mRNA; TSA; MAM; 3669 BP. XX AC KA520265; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27314 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-3669 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-3669 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; 17a1a7f061db3b20da9fa81d29b14286. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..3669 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 3669 BP; 877 A; 1020 C; 886 G; 886 T; 0 other; ttataagtga tcctcaacca gaacatgaat atatgaaaat ttttagatgc atcaagagaa 60 catccatctc cagagactat accccaaccc agccttggtc aggaaaaggg gactctacag 120 gcctagtctc accatcccca tcaaatatag gtagaggatg ccacattcac cacttctgaa 180 gttccatcag gctgcgccct gccctccact gcagtcctat ccagtgaaac cacagacact 240 gggcaaggca gcagtacatc aatgttaatc aggaagggaa gagggtgcaa cctcacttct 300 agtatttcac atttggaaga gtgccttggc agtgaggagc agcccaaggc ccttcccagg 360 aaagaagcag gcacaggggc caggactcag gctccatttt gacccaacgt ttattgtcct 420 tttacaatat gtcatttttg gtttagaaac tgcttgtgat tagttttcca acattaactc 480 aaaagcatgt aaaataaaaa tcaacctact ctctatataa acacccagca actgtagccc 540 ttcaccctcc tgcccaggtt gggtagggga aagggagggc ttgggcagca ttgagtgaag 600 tgcagatgct ttgctgtggg gactggtgat aatgcctttg ttcacaccca cagaggttcc 660 tcctgcactg ctctaaacta cagcagaaat ggtataggcc ccaggcccaa ttccttgttg 720 gtaattcact ctccacctcc caaatgaaaa tcgcttttat tttatcgctt ttgtattaaa 780 tttttttttt ttgcaacagt aaccccctgt ccagagtctg actgtagctg aactgttcag 840 actgaggaat ggagcaggct gtgggcgcac gcctggtccc tcctgggcga gcgcccccca 900 ccctcaggga acaaggtcca gccaggccag ctcactgctt gctggccacc accacttagc 960 catacaggtc atcatcatta tcttctgtgt acacactgcc acctgtgcca ccgccactgc 1020 cctgactggg gccagctcca ccctggtttc ctgaagggaa tctgaaagct gccaaagcct 1080 cgactctgct gaagggtctg agcgaacatt tcatacttcc ggatgtcatt atcactgaca 1140 gaacggcggg caaagcgcat agcttcctca aagtgatctc gacggatctc aggcactgga 1200 tcatcctctt ctacttccat tgctgacggg ttggtttgtc gctcccgttc tcgcctaatt 1260 tcactctcga tcgattcacg aatggccaac ttgcaagcac gttggcaaat ctcggtcaag 1320 tcagctccag agaagccatt agtcatttta gccaggaact ctaaatccac atcctgcaac 1380 tggggacttg cgcaggttgg ccttgagaat ggcaacacgg gacttctcat cgggaagcgg 1440 gatatagatg agctgatcaa ggcggccagg tcgcaggatg gcaggatcaa tgatgtcagg 1500 tcggttggta gcgccaatga taaatacatt tttctttgtg gacatgccgt ccatttctgt 1560 caggatctgg ttgatgactc ggtcggcagc cccaccacca tctccaatgt tgccaccacg 1620 ggccttggca attgaatcca gctcatcaaa gaacagtaca cagggggcag cttggcgtgc 1680 cttgtcgaag atttccctca cgttggcctc agactcccca aaccacatgg tgagcagctc 1740 aggacccttg atggagatga agttggcctg gcactcatta gcaatggctt tggccagcaa 1800 tgttttccca cagccaggag gtccatagaa cagtactccc ttggagggtg tcatgccaaa 1860 cttgaggaat ttgtctgggt gctccacagg atactggaac cagctcctga agctcacgtt 1920 tgacatcctc caagccccca atgtcctccc aggtcacctg tggcacctct accacagttt 1980 cccgcagtgc tgatgggttg ctctggctca gggcccatca agtcatccat agtaactgcc 2040 agggagttca tgacctcagc atcaatggtc tcgtcttcta ggtcaatgag gtccatcttc 2100 ttacggatgg cttgcagagc agcctcagag cacagggctg ctaagtcagc tcccacatgc 2160 ccatgagtct cattggctac ctgcatcaag gtccacatca tctgccagct tcatgttctt 2220 ggtgtggatc tgaagaattt ccaagcgtcc tgtagcgtca gggattccaa tatccacctc 2280 tctatcaaag cgacctcgcc gtagggctgg gtcaatgctg ttgggtctgt tggttgctgc 2340 cataacaatg acatgtgctc tctgctttag gccatccatg agggtcaaca actgtgatac 2400 aatacgccgc tccacctccc catgggtttt tctcttttgg gagcaatggc atccaactca 2460 tcaatgaaaa tgatagcagg agcattcttc tcagcctctt caaaggcttt acgaaggttg 2520 ctctcagact caccggccaa cttgctcatg atctcaggac gatcaaaaag aagaaggcgc 2580 cagtctcatt tgccacagct cgagcaatca aggtcttccc agtcccagga ggtccataga 2640 gcaggattcc ccgaggaggc ttcacaccaa tggccttaaa gagggcagga tgtctcaagg 2700 gcaactccac catctccttt atctgagcta actgtttcct gcagccacca atgtcatcat 2760 agcccacttc attcaaggac tcttcctcat cctctacgtt tgataggctc cccttcacag 2820 tggatcactg tgtctggcgc aacaatgcaa taaggactgg gatctgtctc cactactttg 2880 aactctacag cacgcatccc accccggaca aggaaaatgt ctcctttcgg atgggtcgat 2940 aagcttccag gaagtatggc ttaaggtaaa cctcaaagag attgccagtg atgccttcca 3000 ctgtgtcatc gatgggtagt acatggatgc gtttgccgta cttcacatca gggcatggct 3060 ggatgctgat aaacatcccc caggtgtaca cgaaggttat tccgaacaac tctattcatt 3120 cgaatcttct catcagaaca tgtgtcatca gaaagcacaa tgcacacagc ttcgcgcctc 3180 ttctttcctt tcagcaacac tgtgtcacct cggaacaact gcagttcatc catcttgggc 3240 tgggacaagg ataccacact gttgtcctca ttgatggctt catcaacaat taaccgattg 3300 ggacggtttt tctgtttaag aatggctgtt gataaatcat cgccttttga accggaggcc 3360 atggcgcgcg cttctcccag ccggcggctg tggcggaccg cgggtaacgg ctctgagggg 3420 tggcaggcga ccgactgggc cgggactcgg ctctcccgga gggggggcga gtggcggcga 3480 caaacccgca ggcctccctc tcgtttcctc ccagcggcac tagggcggtg gacgagcgga 3540 cgggcgacgc tagcgcctga tccgcgaggt gggtagcggc ggcgacgact caaacgacgg 3600 ctgcagacgc ttcgctaaga ctgagcggag aagagccgaa tcatcggaag gagaggtgct 3660 cccacccca 3669 // ID KA520266; SV 1; linear; mRNA; TSA; MAM; 1018 BP. XX AC KA520266; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27315 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-1018 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-1018 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; d749d2f167b789c2963ff11df1e8d99c. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..1018 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 1018 BP; 229 A; 253 C; 316 G; 220 T; 0 other; aggcgtgtcc cgctttcaga gccatcgcca gcagctagga ggaaaacgcc tctggagagc 60 cgataggagg ggccgactga cagtcggtcg cggttacgcc tggctgggga tagggtctgg 120 gtggcgaggt gaactcctgt gtttctgcgc atcttttccg taaatgtctc atatggagct 180 ggcgttggac ccgggtgacc atgacctgct aggctttctg ctagaagaaa gcggtggttt 240 gggtgcggcg tccgacaagg ccttgacgtc tccgccggat tgggagctgc cactttctga 300 gtctctgagc gactgggacg tggaggattt cctgagctgc ctgccgagtc ccccagcagc 360 gttgaacgtt ttcagcagct ctgacccctg tcttgtccag catgaccaca cctattctct 420 gtcacaagag catgtctcca tagatctaga taatgagagc tatgaaaaag agggggctca 480 gatgactcca ctgcgtgtgg aggagccggc agatcaggga gattgctacg ctgatactga 540 ctgaggagga gaaaaggctg ttggagaagg aggggcttac tttgcctggg atgcttccgc 600 tcactaagat ggaggaacaa gttctgaaac gggtgcggag gaagattcga aacaaaaagt 660 ctgctcaaga gagccgcagg aagaagaagg tgtatgttgg gggtttagaa agcaggggtc 720 ctgaaataca cagcccagaa tctggagcta cagaacaaag tacaggtcct ggaggaacag 780 aatctggtcc cttttggatc agctgaggag actccaggcc atggtgattc agacagcaaa 840 caaagccagc agcagcagca cctgtgtctt gggttctact gttctccttc tgtctcctcc 900 tggtacctgc tatgtactcc tcggacacaa gggggagcct gccggctgag cacagaggtg 960 ttgtcccgtc agcttcgtgc cctccccagc gaggaccccc tgcagctgga gccacctg 1018 // ID KA520267; SV 1; linear; mRNA; TSA; MAM; 4527 BP. XX AC KA520267; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27316 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-4527 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-4527 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; d592adca589dac1b1369e9e4fb7ce201. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..4527 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 4527 BP; 932 A; 1318 C; 1332 G; 945 T; 0 other; cttggttcta ctgttctcct tctgtctcct cctggtacct gctatgtact cctcggacac 60 aagggggagc ctgccggctg agcacagagg tgagagcgcc ttgaggatac cactaaggag 120 gggctagggg agagccccag cctgcccctg aacacagagt gttgtcccgt cagcttcgtg 180 ccctccccag cgaggacccc ctgcagctgg agccacctgc cctgcagtca gaggtaccaa 240 aggacagctt ggaccctgag ctccaggctg ctagcaactc ttgctgcctc ttccatctca 300 tgccccaggc tcctagagca gagcctcccc tgcaattgcc actgcctgat ggtttctcag 360 agtgctcctg cccagattcc atatctcccc tgcatgcaaa tctcacaaga gaggaaggat 420 ggctccctac tcccagcccc acatctgtta tcttgcaggg cagatactca ggctagatgt 480 gaggatgtgg gggccctctt gtcagagtct ggtgccccca gtctgtgttc agaggaaagg 540 gaataggaga gggctagcct caggtcctgc gccctgtcag gaagcctgag gactcaaaca 600 caccaccctg ggtcttttat ttgaacctgt gtatgtctgt caccccatga aagggcctag 660 gagaatcaga tgacctccct gaacacatca tgcagtgagg ggatggggtg aagaaagaaa 720 taaataagtg attctgatgc atggttcacc ctcaacccct ctttactggc acggtgggta 780 ggtaggaggg cgggcatgat tgtcctggtg gctcagggtt gcaggagacg gggggtgggg 840 atggtggcag aggaaaggtc aggctaaagg ctgggctgtt agcgcctcct tccacagttc 900 acacggctca ctctgggctt gggtttgcca tggcttcctt tggtccatgt ttgggcctgg 960 tgcatagtcc tgtggcccgt ttggatattg gcccagaagc ctttttatgt tgctgctgct 1020 gctgcagggc cagctgcatg gcccagatgc tcagtggccg catgtaggcc agtgagcgga 1080 acacccgccg ctggcagtac gcctcaggag tctggaaggc caggcccagg cgctcccaca 1140 cagtacgata gcagccttca gctgtccgga agccctccca ggtcaggccc ttggatcatg 1200 gtggctgcca gcccgtagac cacacccacc cagacttcat cagactggat gctggatgtg 1260 tcaggaacac cacggggctg catgccattc acagccccca tggcccctcc tgcaaaggcc 1320 tggacattga actcgaagat cgtttggaga gcacggacca cctgttgggt aggaaagacc 1380 tccactgtct ccttctccta ggccactggc ccttaggaac cactggccag cacactggtc 1440 agacatgatg ctataggact gaggctgaga gctgcagtcg tagttgtagt agcggccttc 1500 cacagcagcc gatcataggc ttcctggccc cggctaagga tggaagaaaa cttattctgg 1560 gcctcctgtg ccccacacag agcagccatc tggaccatca cagccacggc cgccagccac 1620 agtcctccac agtaagcact gggggcctgt ggtgacccat ccatcatagg tttggtctgc 1680 atagcctcca ttctcaatga gtccatcgtg gtccttgtca aacttcattt cagactccat 1740 cacggccagg acacacaggc cacatgtccc tcaagaaaca ctggtcaccc gtcaggtaat 1800 agtcccgata gacctgcagc acaaacttca ggttcaggtc cttccagtct ccagtatcgt 1860 ggatctcgta cgcattgatc cggagccatg gctcgtcatc tggggtcccc aacatcatgg 1920 gggatgacgt tcctcctctt cacaggcgct gtgaccccac tcatcaggaa ccgccgctgt 1980 gtcaggtcct ccctgagagt ggccagagct gggggagcag atacacaagg cggggtgcgg 2040 ggcagggagt gggtaggctt ggggtggcgc acagaactgt gtgtgggacg caggtgagca 2100 ggatccacat atgtctgagt ggaagaggca tcagggacca ccaaggttca gggctgtggg 2160 gaactgagaa gcagaagggg cacaaaaggg accctcaccc atgtcatact gaaggctgag 2220 ctcaagtttg ggccagagca tgatgagggc gaaggaagca taaaagtgga catcgtatgt 2280 gttgtacatg cggtattcct ggcctggaga aatgaaggag acaaccttgc tgctgcttca 2340 tactgccctg cctagctgca cctctggaat tggggtatag ggcaccatca cactccatgt 2400 tctaatgtca tactgaaggc tgagctcaag tttgggccag agcatgatga gggcgaagga 2460 agcataaaag tggacatcgt atgtgttgta catgcggtat tcctggcctg tcaaggtagg 2520 caaaccggcc gtactcctgc aggagggggc ggagctggcc catgctgccc accagctcct 2580 ctggcaggga gtcttcagga acttccagcc atactgtgcc cccgtcagcc aggaagtaaa 2640 gttcattgaa cagtgcagat ttgtaccagg caggcaagga tgtcctccaa taccgggctc 2700 tgccaagccg agatcttctc ttcccagtcg gcatagtgcc tcagggcata gtggctgagg 2760 gcgggtgctg catcaccgtc tgggccaaag aacctcgtgt accgcctggt agtagacctg 2820 gccctttgct ccaaacatga ttctgggcat gtcccaagcc agtgagaact ctaagcggtg 2880 ccggcctcgt ggtggcagct tgcccgaaac acacacagcc ccagcgatgc ccactccttt 2940 ctgcgaaggg agactttttc gcgagggagt ccagctgtcc atccagaagt agatcctgcc 3000 acacctgctg cccggcgctg tcagggtcaa aggctgtaag gtgggttacc gttgtgtctg 3060 cctgagtctc gcagccacag ccatggtgta aggattcggg ggggttggat gatgcagcag 3120 cagcccctga acagtctccc catcacgctc cagacagaag ggctcattcc acaacccccc 3180 gggggcgtcg tcttcaccac caagtccgtt ccgcatagag aacatgatgg acacttccag 3240 ggcttcatcc ccttcatttt ccacatccca cacaaagact cctacaggca ggctgctgtc 3300 ctgtagtcat ggggtaagat gggtgtgatc tggcggcagg tgagggtgac gttctggcca 3360 ggaagctgat agacagtcca ggctctggga tagagggcgt ggtagaatgc aaagtaccca 3420 cacagacccc agttccagct gcgcaggaca cttgggcgct ccaccgacag gacttgctgg 3480 tacaccgtct gtcctctccg gcgcaaacac actgtgaatt agcgatgact gtctggtgct 3540 ggtacattcc aggattaagc tgccaacgac agaactggcc tctccagcct ctggtgatag 3600 tgcctccccc aatgccaccc aagggacaac gatctgtctc aggggcacag agttgatgag 3660 gtcgatgaaa ggtttcttct tttccacctg ggtcttccgg taccaccact gcaagtacct 3720 caaagcccat gcccaagtgc tttatcaggt tgctcagcga gatgtcattg gcatttaagg 3780 gtttcctctt ctctgcaaac tcgtgagcca ggcagatgcg ccagccaaag ggaggcacct 3840 ggtagccctg agctttcccc tcgtaggaag ccatcagctg cccggagtcc tccgcactgc 3900 tgtaaccctg ttcatgctgg ggttgactgt cctcagggat tggacagtct gtaacctgca 3960 cagcctccgt gccattttca gggcaagaag cctgtggatc ccctttggca cagctggtct 4020 gctccgaggc tgggactccg gttcccatat tccctggatc ctgggtctcc aggacctcgg 4080 tggtttcagt ttccgagctt tctggtacca agtatctggc cagccaagcc cagatacgga 4140 cgtggatggt tgttaggtgt tgtctaggag agcgggccac gggggaaagc tgaggcgagc 4200 tggtgtctcc gtgcaaccag gtagctgttg ctgctgcggc ggcggcgaca gcaataaagc 4260 cgccacggtc tcaccctcgg ttgtctctct gggtcctggg cgggaaggat cgggtctcga 4320 cgtcattggg ccgcggtgat tagctggccc ggccaaaggg cgactgggcc cacggagagg 4380 ggaggagccc ccggggccgg ccctccaggc accgcccccg ggaccagcct gggagttcgc 4440 cgcagcccag gccccgtccc cgggccgcgg caccaggccc cccagcggtg ggcgccaggt 4500 cccgccggcc ggggtccggg gcggggc 4527 // ID KA520268; SV 1; linear; mRNA; TSA; MAM; 1277 BP. XX AC KA520268; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27317 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-1277 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-1277 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; 8009585aa83f3002d273e2ffad58015c. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..1277 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 1277 BP; 153 A; 461 C; 372 G; 291 T; 0 other; gccagccccc tcccacctta cccccctggt cctcctttcc gcagctctct gccctcctag 60 ccccttcggc cgtgaggggc cccccaggcc ttctctttgt accagcctgt cccccacccc 120 caccccatcc cagtctcgga tccccttttg ctcctcagct tcagattcat cagccgactt 180 cacccctcac tgtccacatc ccagtcacag gccccctcgg tcccgccgtc ctcctgccac 240 cctaccctta gtcctcctca gtccctgccc tgggctgctg gacccagtcc tcacccgctc 300 cctccttttc ctcgcccatc cctgcccctc tcctgtgtcc caaccctcct ggctcatcat 360 cacttctctt ctggcggtct tcccctggtt ccaggctggg tggtgctggt gtctctcccg 420 taggcccgcc tggccccggg ttctgggggc ggtggggccg ctgctttctc cccatggcac 480 tgccatctct cctgctggtg gtggcagccc tggcaggtgg ggtgcgtcct cccggggcgc 540 gcaacctgac gctggcggtg gtgctgcccg aacacaacct gagctatgcc tgggcctggc 600 cacgggtggg tcccgctgtg gcccttgcca tggaggcact gggccgggcg ctgcccgtgg 660 acctccgctt tgtcagctct gagctggacg gcgcctggcc cctctgcgcg ctgtggatct 720 caagttgtac catgaccccg accttctgtt gggcccgggt tgcgtgtacc ccgctgcctc 780 tgtggctcgc tttgcctcac actggcgcct tcccctgctg accgcgggtg ctgtggcctc 840 tggtttttcg gctaagagtg agcattaccg aaccctggtg cgcactggcc cctctgctcc 900 caagctgggt gagtttgtag tgacgctcca cgggcacttc aattggactg cccgtgctgc 960 cttgctgtat ctggatgctc gcacagatga ccggcctcac tacttcacca tcgagggagt 1020 ctttgaggcc ctgcagggca gcaacctcag tgtacagcac caggtgtatg cccgtgagcc 1080 ggggggccct gagcaggcta cccacttcat ccgggccaac gggcgcagtg agtgtggccc 1140 gggctgtgtt agggctaggg gaggagggtt gcggtgtccc tggggctcag cactgggagg 1200 ctgtagatgt agatgggtgt tgaggaactg atggtggtgg ttgggatcaa gaagcagaca 1260 tggatggagc ccctggg 1277 // ID KA520269; SV 1; linear; mRNA; TSA; MAM; 1718 BP. XX AC KA520269; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27318 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-1718 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-1718 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; dc1d37d5345e04491eb7c98514f50c40. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..1718 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 1718 BP; 258 A; 590 C; 482 G; 388 T; 0 other; gccagccccc tcccacctta cccccctggt cctcctttcc gcagctctct gccctcctag 60 ccccttcggc cgtgaggggc cccccaggcc ttctctttgt accagcctgt cccccacccc 120 caccccatcc cagtctcgga tccccttttg ctcctcagct tcagattcat cagccgactt 180 cacccctcac tgtccacatc ccagtcacag gccccctcgg tcccgccgtc ctcctgccac 240 cctaccctta gtcctcctca gtccctgccc tgggctgctg gacccagtcc tcacccgctc 300 cctccttttc ctcgcccatc cctgcccctc tcctgtgtcc caaccctcct ggctcatcat 360 cacttctctt ctggcggtct tcccctggtt ccaggctggg tggtgctggt gtctctcccg 420 taggcccgcc tggccccggg ttctgggggc ggtggggccg ctgctttctc cccatggcac 480 tgccatctct cctgctggtg gtggcagccc tggcaggtgg ggtgcgtcct cccggggcgc 540 gcaacctgac gctggcggtg gtgctgcccg aacacaacct gagctatgcc tgggcctggc 600 cacgggtggg tcccgctgtg gcccttgcca tggaggcact gggccgggcg ctgcccgtgg 660 acctccgctt tgtcagctct gagctggacg gcgcctggcc cctctgcgcg ctgtggatct 720 caagttgtac catgaccccg accttctgtt gggcccgggt tgcgtgtacc ccgctgcctc 780 tgtggctcgc tttgcctcac actggcgcct tcccctgctg accgcgggtg ctgtggcctc 840 tggtttttcg gctaagagtg agcattaccg aaccctggtg cgcactggcc cctctgctcc 900 caagctgggt gagtttgtag tgacgctcca cgggcacttc aattggactg cccgtgctgc 960 cttgctgtat ctggatgctc gcacagatga ccggcctcac tacttcacca tcgagggagt 1020 ctttgaggcc ctgcagggca gcaacctcag tgtacagcac caggtgtatg cccgtgagcc 1080 ggggggccct gagcaggcta cccacttcat ccgggccaac gggcgcagtg agtgacatct 1140 gtggccctct ggagatgctg catgagatcc tgctgcaggc ccagagggag aacctgacca 1200 acggggacta cgtcttcttt tacctggatg tctttgggga gagtctccgc gggaacaggc 1260 ccaggccctc agagaagcat ttcagttggt catcacatac cgagaacccc cgaatcctga 1320 ataccaggaa ttccagaatc gtcttctgat tagagcacgg gaagattttg gtgtggagct 1380 ggccccttcc ttgctcattg ctggctgctt ctatgatggg atccttctgt acgccgaagt 1440 cctgaacgag accatacagg agggaggcac ccgggaagac ggacttcgaa ttgttgagaa 1500 gatgcaagga cgaagatacc gtggctggac tggtcgttat ggacaagaac aatgaccggg 1560 agactgattt tgtcctgtgg gccatgggag acctggtttc cggggacttt caggcccact 1620 actcgggagc cgagaagcag atttggtgga caggacggcc cattccctgg gtgaaggggg 1680 ccccacccct ggacaatccc ccctgtgcct ttgacatg 1718 // ID KA520270; SV 1; linear; mRNA; TSA; MAM; 1813 BP. XX AC KA520270; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27319 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-1813 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-1813 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; cfe31fce639264d6bb5878b710170006. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..1813 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 1813 BP; 440 A; 478 C; 450 G; 445 T; 0 other; aaaactgatg ctggagaagg agctggccag catgttgtgg cgcatccgct gggaagagct 60 gcagttcggc aattcagagc gatgccacaa gggtgcaggc agtcgcctca cgctgtcgtt 120 gtccagttac ggctcgctca tgacagccca tgggaaatac cagatctttg ccaacaccgg 180 tcacttcaag gttgtggcca tcaagcatgt gaataagaag cgcatcgagc tgacccggca 240 ggttctgttt gaactcaaac atgatgttca gtttaaccat ctcactcgct tcattggtgc 300 ctgcatagac cctcccaaca tttgcattgt caccgagtat tgtcctcgtg ggagtttaca 360 ggatctggaa aatgacagca tcaacctgga ctggatgttt cgttattcac tcattaatga 420 ccttgttaag gcctttctcc ataacagcat tattgcatcc catgggagtc tcaagtcctc 480 aaactgtgtg gtggatagtc gtttcgtgct caaaatcaca gactatggcc tggccagctt 540 ccgatcaact gctgaacctg atgacagcca tgccctctat gccatgtgga ctgccccaga 600 actgctcagt gggaaccccc cctatagctt tgggatcatc ttacaggaga tagcacttcg 660 cagtgggcct ttctacttgg agggcctgga tctcagcccc aaagtccaga aggtccggaa 720 tggtcagcgg ccttatttcc ggccaagtat tgaccggacg caactgaatg aagagctagt 780 tttgctgatg gagcgatgtt gggcccagga cccagctgaa cgaccagact ttggacagat 840 taagggcttc attcgccgct ttaacaatgg caccagtata ctggacaacc tcctgttgcg 900 catggagcag tatgccaaca acctggagaa gctggtggag gagcgcacac aggcctacct 960 ggaggagaaa cgcaaggctg aggctctgct ctaccaaatt ctaccccagg cagagcagtt 1020 aaaacgggga gagactgtac aggctgaggc ctttgacagc gttaccattt acttcagtga 1080 catcgttggc ttcacagctt tgtcggcaga gagcaccccc atgcagacac ttcttaacga 1140 tctatataca tgcttcgatg ccataattga caactttgac gtctacaaga cgattggaga 1200 tgcctacatg gtggtatctg gtctcccagg cagaaatggt cagcgtcatg ccccagaaat 1260 tgctcgtatg gccctggcgt tactggatgc agtttcttcc ttccgcaact gcggctacgc 1320 ataggggtcc acacagtctg tgctggggtc gttggcctaa agatgccccg ctattggaac 1380 actgcttccc gaatggagtc taacggtcaa gagattcatg tctcctctac caccaaggat 1440 gccctggatg agctcggatg cttccagcta gagcttcgag gggatgtgga gatgaaggga 1500 aagatgcgaa cttattggct cctaggagag cggaaaggac ctgctgggct cctataaacc 1560 ctacttcttc ccaagtcaga caatcccctg ctgctggtac ctgggtgggc agtagccatc 1620 atctctccac acatcagaag tggacattgt cacatgagat ggaaatcaac atgcataaaa 1680 cccccacctt atatggaaac tgttgccctt tgcagctcag tcttgtacat atacctgttc 1740 ctctctggcc tggtcccctt cctccctacc ttctgtaaat atctgtatct aaaccagaat 1800 attttggcca aat 1813 // ID KA520271; SV 1; linear; mRNA; TSA; MAM; 721 BP. XX AC KA520271; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27320 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-721 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-721 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; 4a171b4829719bb69e137a5c003fc1e1. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..721 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 721 BP; 179 A; 181 C; 242 G; 119 T; 0 other; ggagcagaga agtttaacct agggccatgg ccatggcctg ggctatgcct agaatcaata 60 gcaggaccaa gagaagtgcc ttgaccagag ccaccgccag ccagagccac caccaggacc 120 agggccgtgg ccaggacctc gaccagagcc accgccaggg ctaccaccag gaccagaact 180 ggagctaggt ccagggtcag agctggagtc aggaccaggg ttagagctgg agccaggaac 240 agggccagaa ctggagccag gaatagggct acggctagag ctaaggtcat ttgtagtata 300 gggattccga gcaacatggg aaaaacaggc aggctgaaag ccgagctggg tccagtgtag 360 cgctctgtca gactgtcaga ggagggctcc gtgagcaggt tcccatgaga gtagggggct 420 gggctctttg tccataatgc agctgctctg gcagtggagg cggctgtggc agctgctgaa 480 gctgctgcgg ttgcagctac cagggcagag ctatgacggc catcccaaga agaaaaggga 540 tcggaactgg accctagtcc gtctgagctg ggctgtaagt ctaaacatga ctgcgatctg 600 tcaatagact cagaggtctc catcttccga cgccagctac cgggttgcca tagggacggc 660 aaatcatgcc aggagactgc gcagaactag agctgggcgg acgtggaggg tcagggtgtt 720 g 721 // ID KA520272; SV 1; linear; mRNA; TSA; MAM; 5396 BP. XX AC KA520272; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27321 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-5396 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-5396 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; 3c4db38328d9e02e3daecd7da9f221a5. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..5396 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 5396 BP; 1066 A; 1665 C; 1477 G; 1188 T; 0 other; gaggccttcg aggcaccggg taccctgttt cagtctggcc ccctgtttcg atctgagggg 60 tatccgggct tgggcgcgag gtgcccggtc agctgccgcc gtacctgcct tccgccttcc 120 cgcactccaa acctgggcgc ttccctctga caccgtggta ctgatcccgg agctgtcatg 180 attgaagtgg tagcagagct gagcagaggt cctgtgtttc tggcagggga ggccctggag 240 tgtgtggtta cagtcaccaa tcccctgccc ccaacggcca cttctgcatc caggctctgg 300 cctgggccag tgcccaaatc cactgccagt tccacgccag tgagagtcga gtggcacttc 360 ctccccccga ctccagtcag ccagatgtcc agcctgagag ccagactgtc tttcttccac 420 accgaggtgg agaggtcaat gtatcctttc cactccacca aaaatcctct tctgtgacct 480 gaggctagac cctggagagt ccaaatcatc tacagcgaag tgctgcctgt agagggacca 540 ccctcgtttc ggggtcagtc agtcaagtat gtctacaaac tgaccattgg ctgccagcgt 600 gtcaactcac ccatcacttt actgagggtc cctctgaggg ttcttgtgct cactggtaag 660 tcaagatgtc cggtttcccc aggatgaggc tgtagcccca tccagtccat tcctggagga 720 ggacgaaggt gggaagaagg attcatggct caccgagctg gctggggagc gcctcatggc 780 tgccacatcc tgccgcagcc tccgtacaac atcagtgatg gccgaggaaa agttgggaca 840 tttggcatct tcaaatctgt atacagactt ggcgaggacg tggtggggac cttaaactta 900 ggggaaggaa ctgtagcttg tttgcagttt cagtgagctt acagacggag gagcgtgtgc 960 agcctgagta ccagcggcgc cgcggggcag gaggtgcccc ctcggtgtcc cacatcactc 1020 atgcccggca ccaggagtcc tgcctacaca cgaccagaac cagcttctct ctccccatcc 1080 ctctcagctc caccccaggc ttctgcacag ccattgtact tgaagtggcg tttgcatttt 1140 gagtttgtca cctcccgaga acccggtttg gtgctcctac ctcccatgga acagcccgag 1200 cctgccacct ggacgggacc tgagcaagtg cctgtggaca ccttcagctg ggacctgccc 1260 atcaaggtgc tgcctacaag ccctgccctg gcctcctacg cggcccctgg ccccagcacc 1320 agcactataa ccatctgaga ctgacccacg tggcacagcc ttcttcagga tcctgagaac 1380 tcagcccctg ggctctagta gggcccattg tttccacctg gggtccagtg gcacagataa 1440 tgagaggcag gctttcggct ggagcgttaa cttatttatt cagaataaat cagcagctgc 1500 tagtggtttc cctggaagtg gcagcagcag tgggcggtca gcagaagggc agtcagttgc 1560 atttagctgg agtggggagc aggcgccgca ggcacagggg tgttagctga gccccactct 1620 gggtcgggcc ctcccccttt gcagggcagc cgagggtcag atttttgcac gagggagaac 1680 tggcatgttc ctgcttcctg gcgtacctca cagcccgcag ggaagtcgat aggatgctgg 1740 gacctgggga accgaaggat gggggaaggg tcaggacagt gaaggtccac ctttatccct 1800 gagccgcatc ccctccccag cactcctccc atgtctcccc tgtgcccccg gccctgcagt 1860 atttctcttg cctgccatat atgggttttt ttcatttcat agcaggaata cttttcctcc 1920 agatccatct aactcccctc actctgtagc ctgaagcctt tcacaccttc ttgtcagtcc 1980 acccagcctc ttactgctac tccgttcatt ctcacatcag agcaatctag tcacaccctg 2040 gccagctctc agtccctcac atcggagcca ttctctctgg ccacctttgg tcactcacgt 2100 atcacagcag cccacaccga caggatgcag acaggtgcag tggaagcagt ccttgcggag 2160 ccaagactcg cccagggtga aatatttccc ctcatagtgg cagggggctg gggaagaaca 2220 ggaaatgtta gagccagagt ggaggagtaa gggcacgctg cccctacgtg tggtctctcc 2280 tctgtcccag ctccagggag tctgggtttg ctgcagcagg accacctctg agcccttcct 2340 cccagtgccc tctgcaccca tccttcctta cgcctcaccc agctttacct tgagcctgga 2400 agtagcactt gctgtggact cctgggtgct ggaggagcag agataccacc aagtagatga 2460 ccccccagcc tccccgcgtt cccgcagcct gtcccgccca gggtgtcctt ggggccattc 2520 cggcagtaca gctctttcgg acccttcttg gcttccgttc aggctgctct ggcctcgtct 2580 ccttggatct tctctgttcc tctccttgag ccttagcttc tgtctctctc ccctgggcgc 2640 ctgtcttaca ccatctccgt gccctctgtt ctcacaggct tggggatgtt tataaagtga 2700 ggaccctggc cccctgctga gtggagctgg aaaagccgta actctgtttc ctgaggtgag 2760 ggcatgaaaa caagaggtct agctttaaca agctgtgaga gctgattcat gcccccgcac 2820 agccaggggg aggagggtgg ccggggaagg ggcactggac tgggcacttc cccagcaagg 2880 agggggtggg gtgagggccc ccaggtggtc cccagaactc tccctggcct ggagagaagg 2940 aagcattcca ccatctctcc ccgccccgta atacacacac acacacacac acacacacac 3000 actctccagg ggtgtgtacg ctgggatccc tgcctggacc ggagggaggc atttcctggg 3060 gatggctaat cctgtgcccc agccaaacca aggagatgca gtagggtgcg acggccagag 3120 gctccaggag agcaaacagg cacctggtgt ggagaatgtt tctctcagac cctagggcag 3180 ggtctccttg cagtgtccta gagacatggc tgcccctcag aggttagggg tggggggctg 3240 ggggcaggtg cctctttttt ttacaggcat cccagagata agactatcca ttgttcatca 3300 ccccaaacac acagcaaata aaagatcttg ccatgcctac aagccctgcc ctggcctcct 3360 acgcggcccc tggccccagc accagcacta taaccatctg agactgaccc acgtggcaca 3420 gccttcttca ggatcctgag aactcagccc ctgggctcta gtagggccca ttgtttccac 3480 ctggggtcca gtggcacaga taatgagagg caggctttcg gctggagcgt taacttattt 3540 attcagaata aatcagcagc tgctagtggt ttccctggaa gtggcagcag cagtgggcgg 3600 tcagcagaag ggcagtcagt tgcatttagc tggagtgggg agcaggcgcc gcaggcacag 3660 gggtgttagc tgagccccac tctgggtcgg gccctccccc tttgcagggc agccgagggt 3720 cagatttttg cacgagggag aactggcatg ttcctgcttc ctggcgtacc tcacagcccg 3780 cagggaagtc gataggatgc tgggacctgg ggaaccgaag gatgggggaa gggtcaggac 3840 agtgaaggtc cacctttatc cctgagccgc atcccctccc cagcactcct cccatgtctc 3900 ccctgtgccc ccggccctgc agtatttctc ttgcctgcca tatatgggtt tttttcattt 3960 catagcagga atacttttcc tccagatcca tctaactccc ctcactctgt agcctgaagc 4020 ctttcacacc ttcttgtcag tccacccagc ctcttactgc tactccgttc attctcacat 4080 cagagcaatc tagtcacacc ctggccagct ctcagtccct cacatcggag ccattctctc 4140 tggccacctt tggtcactca cgtatcacag cagcccacac cgacaggatg cagacaggtg 4200 cagtggaagc agtccttgcg gagccaagac tcgcccaggg tgaaatattt cccctcatag 4260 tggcaggggg ctggggaaga acaggaaatg ttagagccag agtggaggag taagggcacg 4320 ctgcccctac gtgtggtctc tcctctgtcc cagctccagg gagtctgggt ttgctgcagc 4380 aggaccacct ctgagccctt cctcccagtg ccctctgcac ccatccttcc ttacgcctca 4440 cccagcttta ccttgagcct ggaagtagca cttgctgtgg actcctgggt gctggaggag 4500 cagagatacc accaagtaga tgacccccca gcctccccgc gttcccgcag cctgtcccgc 4560 ccagggtgtc cttggggcca ttccggcagt acagctcttt cggacccttc ttggcttccg 4620 ttcaggctgc tctggcctcg tctccttgga tcttctctgt tcctctcctt gagccttagc 4680 ttctgtctct ctcccctggg cgcctgtctt acaccatctc cgtgccctct gttctcacag 4740 gcttggggat gtttataaag tgaggaccct ggccccctgc tgagtggagc tggaaaagcc 4800 gtaactctgt ttcctgaggt gagggcatga aaacaagagg tctagcttta acaagctgtg 4860 agagctgatt catgcccccg cacagccagg gggaggaggg tggccgggga aggggcactg 4920 gactgggcac ttccccagca aggagggggt ggggtgaggg cccccaggtg gtccccagaa 4980 ctctccctgg cctggagaga aggaagcatt ccaccatctc tccccgcccc gtaatacaca 5040 cacacacaca cacacacaca cacactctcc aggggtgtgt acgctgggat ccctgcctgg 5100 accggaggga ggcatttcct ggggatggct aatcctgtgc cccagccaaa ccaaggagat 5160 gcagtagggt gcgacggcca gaggctccag gagagcaaac aggcacctgg tgtggagaat 5220 gtttctctca gaccctaggg cagggtctcc ttgcagtgtc ctagagacat ggctgcccct 5280 cagaggttag gggtgggggg ctgggggcag gtgcctcttt tttttacagg catcccagag 5340 ataagactat ccattgttca tcaccccaaa cacacagcaa ataaaagatc ttgcca 5396 // ID KA520273; SV 1; linear; mRNA; TSA; MAM; 500 BP. XX AC KA520273; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27322 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-500 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-500 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; 6c7b18e172d17243c67cd5bde6b03c6f. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..500 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 500 BP; 79 A; 190 C; 104 G; 127 T; 0 other; cccctaccct tgcataagtc cctgtgtcca gcccagccca actctttatc cccgtctgtg 60 ccctcatctc tgtgtttacc caagtctctc ccactgccca cctctcactc tcataccccg 120 cccctctacc agcctcgact caggtctggg ctccagctgc cgtcagcctt actgctgctg 180 ttgctgttgt ctgtccttgg cccaggggct gcctcttcct gactgactac tccacctgct 240 caccccgcaa gctgagtccc ttccgctcct ttgccagcac tgagctcttc cacttccatg 300 tgcctgaaga cacgttcctg gctgtgtgga atctcatcat cttcaaagag cagggaggga 360 cctttgggga ccactgccca gaccaaagtg tgaccgtttc cggtctgggg caccccctgt 420 catcaatccc ctgcacacac acttcccagg ggacacagct gtgcctgggg ttttctcact 480 gactctcagc tggacactgc 500 // ID KA520274; SV 1; linear; mRNA; TSA; MAM; 876 BP. XX AC KA520274; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27323 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-876 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-876 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; e0f7f48963dacfa2376ecad6cdc39b88. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..876 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 876 BP; 161 A; 275 C; 241 G; 199 T; 0 other; agggaaagcg agtttattag catcacaggg tgccgttttc ccccatccca tccaaacatc 60 caggtctggg gtccctggtc atttggtagg ttcaacctgg aggccactgg agctgtcggc 120 ccccaagtac gtgaatgtgt aggtgataca cagactgtgc acccagcttg ccatcgttga 180 tcactgatcg gtatccatca cccagcccct cagcctttgc tgttttcttg gccacaagga 240 gaaggtgtcc aagaagctgt tggtcttcct cttcagcctg gctaatccga ggaatgggct 300 tcttaggaat gacgagaaag tgcacaggag cctggggggc cacatcccgg aatgcgagac 360 actgcttggt cctcatatag gatgtcagct gggaggcttc tatccaggat ccgggagaag 420 atggttgggg ctgctccccc aggagctgcc tgctgggcct tggccacttc attcccatca 480 gtcacacttg cagctcctcg gacctgcaac cccccgaggc cctgccaccg ccaccgcccg 540 acgcgccacg cagagcccgg cggccagcac cactgccgct gccatctttc cctcggccgc 600 gggaacctcc tgaggtgggg cggcggggag ccggcgagcg actgctattg cctctggccg 660 aggccggaag cgaactccgt catcccattg ggtagcgttc ctgggcccgg cactccactg 720 cctccgccac cacagtcgtt gcggaatctt tcattggctt cttgtgccaa ctcgagggtg 780 aattttttac tccattggct tcgtcctcta gtcagagtga aagttcctat accattgggt 840 ccccccacca gttttcgctg tgagatagtt tctcac 876 // ID KA520275; SV 1; linear; mRNA; TSA; MAM; 366 BP. XX AC KA520275; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27324 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-366 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-366 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; bd2888c5935b8e00987617e34e403ea1. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..366 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 366 BP; 55 A; 115 C; 112 G; 84 T; 0 other; cctgaccttg cgctccctgt gtggggtggg gcctcggtgc gatgcctaaa cgcgaccgcg 60 gaggtgcggc tgcgaacttt cctgtccccg tgtgtagatg actgcgggcc ctatggccag 120 tgcaagctgc tgcgcacgca caactacctg tacgcggcct gcgagtgcaa ggccggaggg 180 gctggggctg cacggacagt gcggacgcac tcacctacgg gttccagctg ctgtccacac 240 tactgctctg cctgagcaac ctcatgtttt tgccacccgt ggtcctggcc attcttctcc 300 acgaccatgc ctgtgaccag cctggcattg tggttttctg catcatggac tatgatgtgc 360 tgcagt 366 // ID KA520276; SV 1; linear; mRNA; TSA; MAM; 831 BP. XX AC KA520276; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27325 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-831 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-831 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; ea75f84ef2401553f8edfaf25cb3fc63. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..831 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 831 BP; 147 A; 264 C; 246 G; 174 T; 0 other; cttacagcct gtggtcaagc aggtcagtct ggagagggcc ctgggggaca accattgccc 60 aaatctattt gaaatttact tcccgacctc tcccgggggc atggccaagc accctcagca 120 ccctggccca gccgggtcga tgctgctgtc catggctctg cagcttgacc ggcatggact 180 ctggaacctg cttggaccga gtctctttgc tctggggatc ttggccacag cctggtacgc 240 agcgtccgcc gccggcactg ctacccgccc acatggcgcc gctggctctt ctgtctgtgc 300 ccgggcagcc tcatcgcagg cagtgccatc ctgctgtatg cttttgtgga gacccgagac 360 aactacttct acattcacag catctggcac atgctcatcg ctggcagtgt gggcttcctg 420 ctgccccctc gtgccaagac tgaccaccgg gtcccctccg gagcccgggc tcggggctgc 480 gggtaccagc tgtgcatcaa tccactgtca gcagcatctg tgccagctga gaggggctta 540 gggccggccc tgggagaact ggaacccttc ctcagggcac agagcccttc ctggggttcc 600 tcctgggagc atggagccct ctcagggcta agagacaagt tgtgtttctt gaggacatgg 660 agtctttctt aaggacatgg aactcttctg cggacctggc aacttcctga gggccaggag 720 acctccagca tcttcaggac tggagcctgt gcaggggcac caagccccct caggactgag 780 gggtcctgcc cagggtgtgg aacctgctga ggacatggag acagagccct a 831 // ID KA520277; SV 1; linear; mRNA; TSA; MAM; 476 BP. XX AC KA520277; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27326 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-476 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-476 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; 3b52d5941ddca7b0ddd237d147e5e71a. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..476 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 476 BP; 93 A; 171 C; 122 G; 90 T; 0 other; gctgctctcc aacccacagg agctgagaaa acaaagtcca gtgactgcga gggccgagca 60 gaggctgctg aaggtcagct cccagatgct ggacctcctg gagagcacga cccttgtggg 120 cttgatcata ggcactgcgg gggcctttct actgctgttg ctgctgctgg ctgcctgctt 180 gtactccaga caaacagaat caggtgggcc cagccttgga tctcctcagg ccggggccac 240 ctgggacact tgcaccattt ccatcatgct ggccatgtgt ctcacatgcc ccacgcgaac 300 ctccaccacc accaacacct cgcccaccac catgcccacc atcatgccgc ccaccacgcc 360 gctcgtgccc accgaggccg ccattgatgc ccgtgcaggg ctcccatgca gaagggcacc 420 tccctgcagt gaacactggg tcctgcttgg gcttcatcta cctactatgc ccagtg 476 // ID KA520278; SV 1; linear; mRNA; TSA; MAM; 775 BP. XX AC KA520278; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27328 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-775 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-775 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; dc2562718fa8e6782a3cb7dc2fb88f81. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..775 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 775 BP; 176 A; 228 C; 186 G; 185 T; 0 other; tgtttgccaa gacagctcac ctgtgaccag gtccgagatc ctgtttgtga tacaaaccac 60 atggagcaca gcaatctctg cactttgtac cagagaggga aaagcctctt atacaaaggc 120 ccgtgccagc ctttttgcag ggccccggag cttgtctgtg ggcacaacgg ggagacctat 180 agcagcgtgt gtgctgccta ctcggaccgg gtagctgtcg attactatgg gccctgccag 240 gctgtcgggg tcctctccga gtacagttct gtggctgagt gtgctgctgt gaagtgtcct 300 tcactctcgg cgactgagtg caaacccatc atcccacccg gcttgttgcc cattgaaaaa 360 ctggatacta ttgctaagta caaacaaaaa gccaatcaca gttctggaaa tacttcagaa 420 gatccgcatg catgtgtctg tcccacagtg tgatgtgttt gggtacttca gcattgagtc 480 agaaattgtg atccttatca ttcctgtgga ccattatcca aaggctttac agtgaggcct 540 gcaataagga agcagagaag atcgaatctc ttatcaactc tgacagcccc actctggcag 600 cccacgtccc tctgtctgcc ctggtcatct cccaggtgca ggtctccagc agcatgccct 660 cagctgcccc cagggcccgg cctccccatc actcctgcct cttcctcctc agcctgggcc 720 tcaccttcca cagggtctgg agacacaact gatgcccatg aaaactgcaa aatag 775 // ID KA520279; SV 1; linear; mRNA; TSA; MAM; 709 BP. XX AC KA520279; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27329 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-709 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-709 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; 29b51f2fe9c3903a81735fdc95ff1564. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..709 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 709 BP; 178 A; 175 C; 218 G; 138 T; 0 other; gccgccaggc ctcctcctca gctctgaacg gcgcccggcc gggagggagc gcagcgcagc 60 gcagcgggag cggagcagcg cgccgagcct gccatgggca aatcagcctc caagcagttt 120 aacgacgagg tcctgaaggc ccacaatgag taccggaagc agcatggtgt ccccccactg 180 aagctctgca agaagctcaa ccgggaggct cagcagtatt cagaggccct ggccagcacg 240 aggatcctca agcacagccc agagtccagt cgtggccagt gtggagagaa cttggcatgg 300 gcatcctacg atcagacagg aaaggaggtg gctgatagat ggtacagtga gatcaagaac 360 tacaactttc agcctgggac aggacacttc acagccatgg tatggaagaa tacaaagaag 420 atgggagtgg ggaaggcgtc tgcaagtgac gggtcctctt ttgtggtggc cagatacttc 480 ccagcaggga atgtcgtcaa ccagggcttc tttgaggaaa atgtcctgcc tccaaagaag 540 taatttgtcc agtggaatgg gaaggtggca gactcaagaa cttggatatg aagtgcctag 600 aacaacaaaa ctcagctgtg tgtctgtccc tgtgggtgtg tgtgcttgtg tgtgtgatgc 660 tgagtctctt gcacacaccc ttggttagac agttgtgcat gaaatcatt 709 // ID KA520280; SV 1; linear; mRNA; TSA; MAM; 303 BP. XX AC KA520280; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27330 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-303 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-303 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; 96cca64c88bde59c3689a90a36f01d6c. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..303 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 303 BP; 130 A; 52 C; 41 G; 80 T; 0 other; gtaggatata aaaacaatta tagaaatttg ttgcatttct gtatactaat aacattgtca 60 ggaagagaaa ttaaaacagt cccatttaca actgcatcaa aaaataaaat accctaaaaa 120 ctatcagaca ccaatgaaag aaatttaaac agacttcatg ctcatggact ggaagaatta 180 atactgttaa aatgtccata ccacccaaag caatctacag attcagtgta gcctatcaaa 240 attccaatgg cattttgttc acaaaaataa agtcctaaaa tttgtgtgga aatagaaaag 300 acc 303 // ID KA520281; SV 1; linear; mRNA; TSA; MAM; 379 BP. XX AC KA520281; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27331 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-379 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-379 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; e73aca37f0e5a4bb53d6a61f05a225ce. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..379 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 379 BP; 159 A; 63 C; 75 G; 82 T; 0 other; aaaatgaaaa ctatcaacaa aaagacaact tactgaaagg gtgaaaatat ttacaaatca 60 tatatacaat aaggggttca tatccagaat ctatgaactc atacactcaa tagcataaaa 120 acagttttaa aatgagcaga cgatttgaat agacatttat gaaaaaggtg ctcagtatca 180 ctaatcatga aaatgaaaac cacaatgaga taccacctca catttcttag gatggctgtt 240 atcaaaaaga caagaaataa caagtgttgg agaggaggag gagaaaggga acccttgtgc 300 actaaagtgg tacagccacc atggaaagca gtatggaggg gcctcaaaaa ctgaaaatgg 360 agctcccata tgatgcagc 379 // ID KA520282; SV 1; linear; mRNA; TSA; MAM; 494 BP. XX AC KA520282; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27332 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-494 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-494 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; d94d0fe425692a4903fd269328ee7ba9. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..494 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 494 BP; 190 A; 76 C; 107 G; 121 T; 0 other; gagcagcctt acacacacag tcaagataac ggaaacaacc taagtgtcca ttgacagatg 60 atgagtggat aaaatgtggt gtgaatatat atgacagaat agtattcagc cattaaaaaa 120 aaatgaaatc ctctcatttg tgaaccatgg ataggccttg agggcattat actaaataag 180 taaacagcag accaagaaat acaaatacca ttatgatcta agtgctatgt ggaatcttaa 240 aaaaacaaaa cccagctcac agagaacagc ttggtggttg ccacagatgg ggttgggagg 300 tggggaatgg gtgtagaggg taaggtacaa actttcagtt ataaaagtca cagggatgta 360 atatacagca tgacgactat agttgataac accataaggc atatttgaaa gttgctacta 420 aaatcaatct taaaagtcct catcacaagg aaaaaaagtt ttaactatgg attgtgatga 480 tgttagctaa acag 494 // ID KA520283; SV 1; linear; mRNA; TSA; MAM; 412 BP. XX AC KA520283; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27333 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-412 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-412 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; 8ff741b1361bb25f20890db218c39c0f. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..412 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 412 BP; 139 A; 83 C; 75 G; 115 T; 0 other; gctagttgta ataattacgt tggaatatat tagcctttcc atgaatttaa taaaaactga 60 gatctgattt tatagattca gtaccattct tccaaatatt tggtatgaaa cttgatagca 120 atgcaactgt ctggtatata cagtggttgt agatttcacc aaggaacaat ggatgcccct 180 tcacagtaca ctgactggcc ccagacacta atggccaagc caacaagctt ccttcccagg 240 aatcaacatg gaatgtttca accaggacct ggagattact tcagagctga cagagttcta 300 ggaatcagcc aaattaaccc acaaggaagg aaggaattca aatacaatct tgattcctct 360 acatgtgaac aagtgaaata atatgttgta gaaaccttca ggtttcccta aa 412 // ID KA520284; SV 1; linear; mRNA; TSA; MAM; 447 BP. XX AC KA520284; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27334 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-447 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-447 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; 5a5fdb7b54ca134910dbe21776502bcb. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..447 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 447 BP; 154 A; 97 C; 98 G; 98 T; 0 other; cagggggtgc taaaaacaaa caaaggtggt atttcatgca aaggaaaaca aaaaaacaca 60 gcagagttaa ggtggtaaag ccaatattgt tttaggagga aaggggaagg tggcaagaaa 120 ccaacatctg cctgctacct ggtgcatcac ctaaggagtc agcagctggg tacaaatcaa 180 ctgttctttc tcttctgcta gccacacggt tgctaaatgt ggctaggttg agctggtttg 240 gaacacatgc atgtacgctc ctaacacaca ctaactactt aataagcaaa tctgcacaca 300 tctctaagag ccccatgcga agaaaagaca ttcccaaaga gagatcagcc acaagagtgc 360 aacaattctg gattttacca aaatagaccc tgctgcctcc taaattgcca acggcctctc 420 aaaaatttaa tggaaaaggg gtagtat 447 // ID KA520285; SV 1; linear; mRNA; TSA; MAM; 499 BP. XX AC KA520285; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27335 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-499 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-499 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; e6349ffc8a92a023e12e85a22fdb23b9. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..499 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 499 BP; 169 A; 96 C; 114 G; 120 T; 0 other; cactgtttag atgtatttct gatgcactga caaatacagg ggcaaacaaa gtatgcaaaa 60 tcctacttgt aggactagat agaggcaaca gtgtctggaa aagggcaaaa ttgtgcttct 120 gtgtgaattg actttactga actctaagct gtgatgagct tatagtcttc aagggaaggc 180 aagtagcatg gcagtaacaa gtagttaaca ctgtctgagt agaaaacgga cacagggcca 240 aacgaaagct gagggtggca gcaagtcatc ccagtcctga ctggagagct gcagcctgtg 300 ccactgcaac cagaacaagg gcatcaactg cacgaagagg cagacaacgg tgacgacact 360 acaagaatga gaggggaatt caaacattgc tacaaaaatg accagctatg tattcttttt 420 agagcaacta aatgcaggtc aattcctgtt ttacagcatt attttttata caaaaatcaa 480 atcttcattt atactgcaa 499 // ID KA520286; SV 1; linear; mRNA; TSA; MAM; 784 BP. XX AC KA520286; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27336 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-784 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-784 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; 4200bf03d8eaeafc223c074463456c6e. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..784 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 784 BP; 257 A; 171 C; 152 G; 204 T; 0 other; ctgaagcaaa ggaagaaggc ttttctcatt ccattcactg ggagggaagg ggatggagta 60 ttcaatgctt atcgttgatg cacccttagc aatcagtgtg caacagcaaa cacaaggggg 120 aaaccagtgt acagtactag tgctgtttaa ataacacacc agattataca ttgcagcata 180 attaaaacta cacacacatt cttggtacat gctggtatat aggatctcat acacacgtta 240 gctaccatgc cctcacacaa gtagtttcac acattctctc tctctcacac acacagatac 300 atttaccatc aacagtcata cgctgcactc attgccactc acagtttctg aaggctctat 360 ataaggtaga ttgctatatc atctggagct accactttta atgaaagcac atgctaaaag 420 atcacgtcca ctgtaatctt gcagcaacac tcggaatgat cacacaaaaa ccagggaatg 480 ttagtgcaca cacaaaatta agctaaagaa aaagtctttg gagttccaat cacacggtta 540 gtataacaat cccataattg tgaagactaa ttgtaagctt ttatagttga ttaagtcaca 600 cagtgcaaag aaaggtccat tgaccctttt ggtaaaggga gggctggaag ccacacagat 660 taagttcaat ggatagtccg tatatacatg tgatgaggaa cacccaaact aaatttgtgc 720 tcttaggttg gtcattctga atcccgatgc acttctgaag catcagctcg gcagattggg 780 caag 784 // ID KA520287; SV 1; linear; mRNA; TSA; MAM; 478 BP. XX AC KA520287; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27337 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-478 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-478 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; 2e4165280435af97a715d730d5248c87. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..478 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 478 BP; 135 A; 81 C; 164 G; 98 T; 0 other; ctccatatga aacctcctga tgcaaaggat catgtgttag gaactgcaaa ggagctgatg 60 gaggtaatgt cgggggatgg gcagatggag ggtaagtaaa aactcccaca ggaagatgtt 120 ctcctaagcg ttttctatcc tttgcagagg ctgagggggg cgatcgagac tgctgtgttt 180 ggaaagggac aaactggctt ggaggcggca aatgaggagg gtgatgggga gaaagatggg 240 gaggatgtaa aataaacgga tcactggaaa taaggggtgg aaatgcagca tacggtactg 300 gtaagtgctg aacagaacat tggaggaggc acactacaga cagggaggtg ctgtccactg 360 aaaaccacag agcatcctgg gacctgttgt gtactgcaag cagggatgtg ctggcctgtg 420 cagaggggaa tcccatgtgg tgccactgtt gttactgtgt aagaaacagg gacggtgc 478 // ID KA520288; SV 1; linear; mRNA; TSA; MAM; 627 BP. XX AC KA520288; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27338 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-627 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-627 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; e468d9c2c4a4f7a0921c88d83993eadf. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..627 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 627 BP; 114 A; 167 C; 187 G; 159 T; 0 other; tgatcatgta tgtcaaccat tactgcattc tgctggggtg gatgagcagc agggtgtaac 60 agacggggag atacattcgg agggtggaag gcgcgaggtt cttctattgc ttgctgctgt 120 gcataaggga gatggtgata attttcatct tgactaatgg aattaagtcg agactgacga 180 tcccttcttc ctctctgacg cccttcttct gttgcgtgca ggtgtgttgc atcgttcccc 240 tgagaagtga tgttggcttg gtcgaactga agggggctgc ctatttgatg tcatctccca 300 tggtcgcatt ggtggtgagg gagctggtga tgctgatgta taatcgaaga ctgaatgaga 360 gaggcgctgt ctcttgggac ttggactgcg aggggaggct ccgccctgcg gggctactcc 420 cgcggctccc cgctgggccg ccgcctccta ttgtggccgc ccgcagccag ctcgccagat 480 cttccgttcc cgggccttct caaccccgga acccgaactc cgacccaggc gctatcacgg 540 cgcttccttc ctcccggcac catcacacgg gcccttgtca ctgtcatcat gacaaatgtg 600 gtcgtgatgg atggactggc actgaaa 627 // ID KA520289; SV 1; linear; mRNA; TSA; MAM; 3875 BP. XX AC KA520289; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27339 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-3875 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-3875 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; e5cf58a1ba538087055bb6e37f65e140. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..3875 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 3875 BP; 1041 A; 931 C; 866 G; 1037 T; 0 other; aaaaacccgt cactagacga aatactatat tggcaaaatt tccacagcat acaagaatat 60 tttattaaat tcaccactga gagagagtgt caaggataaa tcagttcatt tgctactgag 120 atattcttgt gaaagctttc ggtagcctgg agtaaatcag aatatatttg cactttggaa 180 gattttgata tgactagagg ttgtgtagct taccagaaaa agcacagagg gacccacctc 240 aaaccttatc tttaagactc attagccacg tggttctagg cacaccactt aagacttagt 300 ttggggtcct ataaaatggg aattaaaaca tctaccttac tggttgtgag aatttagaat 360 aatgtatatg aagcaccaag ttcagagcct ggcacacagt aggcacttaa taagtggtgg 420 ctattagtat ttcttccagg ttgaaattga tagcaagaac cttggcctct gcatcttgac 480 accaattcaa acatggaatc ttacttagcc agaatccaga ttcacagatg tgggctctag 540 gcaaaagtga agtcgctcag tcgtgtctga ctcttcacga ccccatggac cgtagcctcc 600 caggctcctc catccatggg attttctagg caagaatact ggagtgggtt gccatttcct 660 tctccaggag atctccccga cccagggatt gaacctgggt ctaccgcttt ttaggcagac 720 gcattgtagg cagatgtaag tctgagccac cagggctcta ggtatataac acacaataaa 780 cactgccttt atcagtactc cggtcatact caacacaata tgaaaagcta ctgaagagag 840 acatgtctgt tctcagtagc aaatatcctt ctgggacggt taatctcctt tcagagaatg 900 taagtcctag tggcttctca gcggtcctta agaagataag gacaaggtcc ctaaggccac 960 tgtaattcag acctctgatc tacagttgct caagattctg agagagtaat agcaaacgac 1020 gtctttcagc aagtaacgta cggcagtgag agatacgcct gatgtcttga ttgtggccat 1080 gatttcatat agatgtcaaa acttatcaaa ttgtgcactt aaaaaaaata cctcaataaa 1140 actgcttttt aagagtttac ttaagccttt cgtggtgaga tttccttcca ttccctgact 1200 ggatcccttt ctgtgttctg aatttagggt cagaggagga aggattaata actcaaaact 1260 ccagtatcaa ggtcccaccc caagcgaggc ctgcaggtct gagtggtaca tctagtaaac 1320 ggagtcctaa ggcgtccttg gctactgttg tagctccttt tggcacagaa gagtatgaca 1380 aggtttgagc tgaaataacc ccaggaggaa cagcatctac aaaatcaggt tgggaaaact 1440 gactttggaa gaggagacta aaagcaaaaa cttctctgcc atagtcacct gccagattgc 1500 ctaataaatg ctcatctaga agacaacctg attccaccaa ggagctctcg agtctctgtc 1560 ctcgtgcatt cctgggaggc ctagtagatc ctgcgagtcg tgtagtccag gaccatgctg 1620 gcggcgccga gcagagcagg ttccaccaaa tctgaaacca ccacgtccac atcctgaacc 1680 gaggacaagg cttgctggcg gatgacgtct ttgacagtgt ggatgtagtg actggctagg 1740 actccagaga ggatcacaag ggaaggattc atagtgtgga ggatgttcac aaccccaaga 1800 cctaaagctg ttctcagctg ttctcaagat gctctgggcc tttgcgttgc cgagttttgc 1860 agcctggatg agatggagtg cgcccacagc ttcgtctttt ggcactgaca tcccttccac 1920 caagagctgg tcttcatcat gtagcttttt tgcttccctc tgcaaggcca tcccagaggc 1980 atatgcttca atgcacccgt ggcttccaca ggaacaatca ggcccatcca gggacaccac 2040 aatgtggcca agctctgcag cacagaagga gctgccgtgg atcagttcat ggtggtggac 2100 gatccccccg ccgatccctg tgcctgtgat aagtgtcaca aagttttcaa ggccttttcc 2160 ttggccaaac ttcctttctg ccagggcggc acagttgcca tcattgtcta cccacacggg 2220 gagatgcaaa gtgtcagaca gggggcttct gaggtccaca gagttccatt cttgaatcag 2280 tttggttgaa tgcagcacaa ttccttcccg aggatttaca cggccacctg tagaactcac 2340 ctactcccaa aattctgcag ttcagtttta cagcttctgc tgcggcttct acacacatct 2400 gtaggattaa attaatcctc tcttcatacg ttttaggatt gaactgagta tacttcttaa 2460 ctatttcttc atgctgacta ttgcaactcg gaggttcgtc ccgccaagat caacagccaa 2520 ggcacttaga gtttcaagaa tatggtcaat atcttgagag atgttatcct tcacaggagg 2580 aaaacaaaat ttcttttgta gtggctcttg aagatcaata gatttgagaa acttcaaaat 2640 ccttggaaca gcatttccat ccccatatat cttcaagggt actgtttacc aaactgaagg 2700 tgcaatgctt gcaatatttt gtcttgggta tcagcatccc ggacatgaag gacattctcc 2760 cctgtttctc ttccaatctg acgtgttcct aagttgatca caggtgttcc aaaagctcca 2820 acttctcgta ccccacagct gctgttccca atcatacaac cagcatgggc aaccagctgt 2880 ataaactggt caaatgggac atgtttaact gcacgaaaat tgggatgatg ctcaatgccc 2940 ttcttccgca tcactcgaac catctctttg ccctgcatca atatttggaa acagaactag 3000 ggtccgcttg ttaaatgaga taagtgcatc caatgttaat tcaaacattt ttatagaatg 3060 cttaatgtca gtggtcacag ggtgctgaag tgcgacaatg taatctttag gttttacatc 3120 acctaaccac atccgaatga tgctcatgta gtctttgttc ttggcagaga gcagcttgtc 3180 gtaggaaggg cagcctgcca gcaggatgcg gtcatggtcc tcacacatgg atatcaggtg 3240 ttgctctgca cttcgggtgc agcacacgtg ataatgagcc agttttgtta tggcgtgtct 3300 gatagagtca tcaatggtcc cactgacttc ccccccttca atgtgaagga ttcggatgtt 3360 catcaaggca gcagatgtag ccagagccag ggcatcaaac ctgtctccat gaacaatcat 3420 gatatcaggt ttcaggcgat taaggacatc tggtagcttc acaagggcca ggcctactga 3480 ctccaccatg gctgcctcat cttcccctct gacaatcgtg tgtaacctgg tgttaatgtc 3540 aaagtcatct tgttcaatca tgcgatacgt tccatagtca tctatcaggt gagagccaag 3600 taccaccacg tcaagttcaa agaactcagg ttccatttta atgccaaaca tgatgggggc 3660 aagtttagaa taatcagcac ggttgcaagt agcaacacaa acccgaagct tccggttatt 3720 ctctttcttc tccatgattt gttttctttt tgagaggttc tgaaaataga ccagtagcgg 3780 gtccgctgtt tctcccgcgt cgccgccgcc agacctcgcg ggtgagaact gagggccgag 3840 ccggaacgca ggccggcgcg agaccgcccc ttcgg 3875 // ID KA520290; SV 1; linear; mRNA; TSA; MAM; 1048 BP. XX AC KA520290; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27340 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-1048 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-1048 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; 79d6a42438bfcb6824af7a5a29aa5cd5. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..1048 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 1048 BP; 357 A; 228 C; 248 G; 215 T; 0 other; gggatattga gaaatctaaa cctggagaga gatcgggtac aatccaggag gtcatgatta 60 tagaagtcag ttcaagtgaa gaggaagaga gcaccatttc agaaagtgat aatgtggaaa 120 gctggatgct gctgggatgt gaagttgatg ataaagatga cgatatcctt ctcaatcttg 180 tgggatgtga aaagaaggag aagatgatgt gaactggttt atcagtgagg cacagatagg 240 taataaaaga tcatctggaa gatggaccca tcgatactat acagccaaca aaaatgttac 300 ctgtagaaat tgtgacaaat gtggccattt gtcaaaaaac tgaaaagtcc gcccctgctg 360 cctctgttcc gagagaggac acctccagta tgcctgtccg gcccgctttt gcttacgctg 420 ttctttgcct atgtcttcca ctcacagatg tcttgaaaga gcttcctgga gaaaacgctg 480 tgaccgatgt gatatgatag gtgcttgccc agaaatctgg aggcaacgac caaacctgga 540 ccacccaaaa agccaaagac cacttctgga caatcaacct tggtgtattg ctacaactgt 600 gggcaagaag ggaatgtaca gaaagacgaa tgtttaacca gacctttcca acatctccat 660 tcatctatta ctatgatgac aaatacaaaa tccgggagag agatcagaga ataaaaaact 720 ccagaaaaat ggggacttgc caagaaagtt caagaggcct catatggaag cagcagataa 780 gaggccccgt gatacaagaa caagccatgc ctcatggaaa aacaacaggt ggcctcaaga 840 aaagaaagaa acccaaaaag aaaccatgag caggaacatg agagaacgtg agaagcacag 900 aaaggctgcc aggtgtcatg aagatgatga ggacttcccc aggggcccca gagtccactc 960 tactcctggc acttccaaaa cccagaagcc tcacaagccc tttcaccact catcacatta 1020 cctcaagccg agagaagaca ggctatcc 1048 // ID KA520291; SV 1; linear; mRNA; TSA; MAM; 898 BP. XX AC KA520291; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27341 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-898 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-898 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; 6189e38b904f9e484747739961bfebb3. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..898 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 898 BP; 217 A; 223 C; 267 G; 191 T; 0 other; ggagcaagca cagcggccgc tgccggacgt ggtgtttgct ggtcggttgg tgtttctctg 60 aaagtcggtg ccgtcgaact tcccgccatg gctgagttag atccgttcgg cgtccccgct 120 ggcggtcccg ccctggggaa cggagtggcc ggcgaagagg atcctgccgc ggccttcttg 180 gcgcagcagg agagcgagat tgcgggcata gagaacgacg aggccttcgc catcctggac 240 ggcggcgccc ccggatccca gcctcacggc gagccgccgg ggattccaga atgctgttga 300 tggaatgacg aatggagaat actaccaggg agagtaatgg gccgacagac agttatgcag 360 ctatttcaca agtggatcga ttgcagtcag agcctgaaag tatccgtaaa tggagagaag 420 agcaaacaga acgcttggaa gcccttgaat gccaattctc ggaagcagga agcggagtgg 480 aaagaaaaag caataaagga gctggacgag tggtatgcga ggcaggatga gcagctacag 540 aagacaaaag ccaacaacag gggcagcaga agaagccttt gtaaatgaca ttgaggagtc 600 gtccccaggc actgagtggg aacgggtggc ccggctgtgt gactttaacc ccaagtccag 660 caagcaggcc aaagatgtct cccgcatgcg ttctgtcctc atctccctca agcaggcccc 720 cctggtgcac tgaagagccg ccctgtggaa acactacatc tgcaatatct taatcctact 780 cagtgaagct cttcacggta attggattaa ttatgttgag ttcttttgga ccaaaccttt 840 tgtctttaga gttgatcatt gtttgtgatt gcatgtttcc ttcaactgtg ttctccct 898 // ID KA520292; SV 1; linear; mRNA; TSA; MAM; 1175 BP. XX AC KA520292; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27342 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-1175 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-1175 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; 721293deb2b06cedc20c8261f8d56799. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..1175 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 1175 BP; 329 A; 308 C; 268 G; 270 T; 0 other; gatgcctggt ttaaaacaga gtactggtaa cagcagggtt agcagaaaaa gcaatactac 60 ttcactcttt tgttcacctt aataacccaa ggtgaagaaa aagaacacat agttagaggc 120 attaatatga caaagctttt atttcaaagt ctcaaatttt gaccagcata gcaccactga 180 cccaggtgcc ctgatagaac ttaatgattt ggtcaccaga aatgattatg ccaagctata 240 attaaggcta accaatcaaa atccaggtac ccaataccgg ttaaaattca ggtagaaact 300 accagttgta ggaaccctgg gactggtctt ccagggaacc tctgaattat ttaagtgcta 360 cagcatgtac aaggacactg gcccacaggc ttgcttctca cacacagaaa ccgattgact 420 aagaggtaga tgagagattc cagattccac tgggcagtgg agaggcgggg ctccagccac 480 tgtgtcagtc cccgaggcaa gtccactgaa gcctgagctc aggtcggggg ccacctcctg 540 gcatctcttc ctcaaggtgg aaggggagga gggcgaccgc tgttatgtgc cgccagctcc 600 tcttcccagg ccaggcaggg cctctcctcc tccacggtga cccacctgcc tcccagggtt 660 gatctcacaa gtcactggtt ccacagaggg gtggatgtag agcctcatca cattgtcaga 720 acatgactac taacaatttt ccacacatac caaacttcac aggtgatccc acggcctcca 780 cccgcctccc cacctctccc ctcccctttc aggagaccga ccagaggctt cccttttggt 840 tttcctccct gggaatcagt tcataggaga tgctaaatct gacagtgagc attatgagtt 900 tatccacaga cagacttgta actgcatatg ctagattaag agaagaccca tgctgactac 960 ttttctaaac acaagaaccg aaggattttg ctcaattatg cacagtggtt tggggtgtct 1020 caaataaact gtataaaaaa atgaactcat tcatgagctc tatagagacc cattaacctg 1080 tgctgttccc ctggaagctc tcaagccagg gctcagccta acagatgctg cccaaagggt 1140 tggaaggcca caggggcggc ccagggaagg ccggg 1175 // ID KA520293; SV 1; linear; mRNA; TSA; MAM; 409 BP. XX AC KA520293; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27343 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-409 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-409 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; ddbdaaa50230eb70f3dab625022b6943. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..409 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 409 BP; 105 A; 109 C; 90 G; 105 T; 0 other; gacatgaatg atgggaccag atgctaagcc accttagcct tagccaaaag acctccaagt 60 ttccctcact gaggacagga cagtcacagc ccagtggtga ccacagcaat gggacctgct 120 acctagactg tcaagcaaat taaatacatg tggcaaagtg aactagataa ggtcacaata 180 ctcacttttt ggtcaagaat aatcagggta ggcatttttt tttttttggt aggtttcttt 240 cattttcatt ttaacttagt tttaggccct cccctcccct cccactccca ggtgggtgcc 300 cttcactaag cacctcctca ctcctcaggc tctggctttt ccccgcagcc aagccagact 360 gaagagtggg gtttctcccc taggaggcag gtaagggagc agcagaaag 409 // ID KA520294; SV 1; linear; mRNA; TSA; MAM; 666 BP. XX AC KA520294; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27345 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-666 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-666 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; 0a22cb1c307d818353c98634d9c73051. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..666 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 666 BP; 178 A; 158 C; 144 G; 186 T; 0 other; cttttagaca ggcacaaagt tgccactggt tacacataag tgcgttttgc atcactgtat 60 acaagtatat aatattctca tcagaaggta tataggaaat ttaattaaat gcttcagtac 120 aaaaattgct aaaaaatgtt tttgcacttc aatgtttaat ttttcaatgt gccacttcta 180 acatcaatta cagactactt tccgactgca ttactcaacc ctaaggaaga acgtggtttc 240 agggactgga tcccctctct gaatgtgtgc aatgcactca gaaatgcggc agcacaagca 300 ctacacctgt gaactctcca cttatcggtc ttcgaaatct gcaagagcca ctcacagcct 360 gaagtcttaa accccatggc attaaccacc aaccaacccg agattttagt tccggtccta 420 caactggcat tggcattatc ttgaggtcag gctagagcaa agtgctgggg aggttgctgc 480 tctgccagcg caggcaggtg gtcttcgagt gtttgtacag gtggctggac tgactgaacc 540 tcttgccgca cttcaggcag gcatagggtt tttcacctgt gtgaacacgg atgtgcttct 600 tgcaatctgt cagggtcaag aaagtcttgc agcagatttt gcaggcgtac ttgcgagccc 660 cctcta 666 // ID KA520295; SV 1; linear; mRNA; TSA; MAM; 1767 BP. XX AC KA520295; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27346 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-1767 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-1767 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; 2babe5b4a2c4c98b096edcb7e3a678f8. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..1767 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 1767 BP; 353 A; 507 C; 509 G; 398 T; 0 other; tgggaactgg cagaattctc tgggatctgt gagctcctga cagaagttac cactggcatt 60 ttgggagcta tgcggcggta gtatggaaag ttactggctc ctcctcgagg ggaacccatc 120 attaccctgg agaaggagga gtgcaatccc aaaccggacc tggaaaaatc catcccaaac 180 tgttctcctc cttggtagcc tgaggtctgc acacacggta ggcccatcac gtcctgcatg 240 ggcctgacaa agtgggagtc cgcgggctcg ctgaatgggt tctccacatg agcaccgggg 300 gccgaggagg gcccgctcgc aggcccagcc tccggactca acaaataagg ggcctccccc 360 tccagcctgc agtcactggt tgtgtttggg agattatcgc tgctcttgtt aagaaaattt 420 gaaatactaa aggtggattt atgttcgagg ttattggtga cttccaaaat gtggatgtcc 480 cctacccggt cagtgctaga ctggggatct gaaaaactcc ggtcgctgct ctctgggctg 540 aggtctatct tctcagcact gaccaccacc ccctccacct ccaccgactc gctgccttcc 600 gcttgggagg tcacgtcact cacttcgtcc tgaggctcag gagagctcag gggctcagat 660 ttgaccacca ccctcatgtg ctccttctca ccaaggccca cctccgggtt ttcacactga 720 aaagcactct tctcagctgt ggtttcctgc tcaaaactag tctcgacctg agtggcacgg 780 gaggccatgg agagctgggc catgttgctg gcgctgttgt cggactggct gggcacctgg 840 gcatcttctt gagcgccaaa agactggtca aacatgatgg tgctgtcgtc tgggttgtcg 900 gccatcccat cagccttagg gttgtccacg attttcagag aatctggaga aaagaactcc 960 tcccgggaat gaacccccgg cccattctct ggcgtcacgt cggagatggc agactcgtcc 1020 agggtgggtc ggaggcgctg tctggcccgc tcctccgcag actgcttgcg cttgtgcagg 1080 cggcgcatgg ggaagggcgt ccgctggtcc aggttaccgc gcatcgagga gctcatgggg 1140 gctggctgct cctcgccgct ctggctggaa ctgagggcgg agctcacaat gctcagtccc 1200 agctgctgca gcataaagga gcgctgcatg cgggcgctct gctcctgaac acgctcgctg 1260 gggggagaca tgggcagcgt ccgtgtcgtc aggtaatgtt tacatgcctt aacaacagag 1320 ttcagatgca ggtgagaggc tgccagtaag acatccatga cattgctctc ccccagcatg 1380 agagtggagg tgtacatcat gtcaatcagt gcggcgaagg cctctgctgt caccacttcg 1440 ctatccaact ggatcatgtt catggtctga tctccctctg ccactgagaa cagggctcgg 1500 aaatgcgtgc tgcatgctgc tagtactgag cggtgggctt tgaaatgtct gttccccacc 1560 acaatgacac agtcacagag ctggccatga agtctctgat agttcagctg ctggaagatc 1620 tgttcaaagt gaccaggaaa ctgagccggg ctccgccccc cttttcgaag gaggaggcgg 1680 tgacccttct ccgatcccac ccgacagtgt cggaggacgt ggaaacgtcc aggctggcgc 1740 ctccgtgatg ggattcctcc cttttcc 1767 // ID KA520296; SV 1; linear; mRNA; TSA; MAM; 1546 BP. XX AC KA520296; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27347 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-1546 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-1546 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; 5204ce2976df21ea0334b537cbfd6801. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..1546 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 1546 BP; 434 A; 359 C; 414 G; 339 T; 0 other; ggattgtcgg ctggcgaggc gagatggcag cggaggtgtt tccgagtgcg aggtggcagt 60 attgtgggga gcccgacgac agccaaagct ccagttctcc aatgggaggc tacagaatcc 120 aggcaacatg cgctttacct tgtacaagaa caacgactcc acaaacccca ggaagaggag 180 tcagcagctg aaacagacag actttcctac gtgggaaaca attttgggac tggagccctc 240 aaatgcaata gcactttgtg ggaattttga acaagacctc tggccagatg gaagtatatg 300 atgctgaact gttcaacatc cagccaatga atcagttgag agtgaatcaa caccggagag 360 tcaagccaaa tctttatgga ttcttgcatt gaagccttcg gtaccaccaa acagaagcga 420 gctctgaact ccaggagaat gaacaaagtt ggcagtgaat ctttgaatcg tgcagtggct 480 aaagctgcag agaatataat tgatacaaag ccctggtcag tgacgccatc cacgatgact 540 tgcaggatga ctctgtctgt ctccctccct gccacgccga tgcagccaag cctgaagatg 600 tgtataagtt ctttcccctg tggagtatga cgctcttcag agcccatctg aagcattcag 660 gaatgtcacc tcagaagaaa tactgaagat gattgagtca ctgctccttt gtcatagaag 720 ccttgaagtc tttgccatca aatgaggaga gccgagaccg ccaggcacgg tgcatatggt 780 acctggacgc cctcatcaga tttcgagcac agaaagtgat taagtgccct gggacccgga 840 gtcccccaca tcatcaacac caaactacta aagcagttca cctgcctgac ctacatttgc 900 ggaacttaat ttcagactct atgaaggcaa agatcaccgc ctatgtgatc atactggcct 960 tgcacataaa tggcttccag attgacctga caatgttaca gagggacttg aagctcaagg 1020 atgatggaga tagcgaaagc catgaggctg aagatctcca aaagaaaggt ttctctggca 1080 gcgggtgggg aggaggagca cagactgggt actctgtcca tcccgctgcc tccagccctg 1140 tccttggacc gtcagtcaaa gcgaaggaaa atgacctaga ggtgtgcgtt cccagacaca 1200 acattttgga aagaagaagc cttgctttgg catgagcatg aagccagatg ccagcacctc 1260 agttgtgctg gtctgaagca gaaacataaa gcaaggccct gttggactct ctgtctctgc 1320 tttggtgtca ctgtgactat aaatggcaga tggttcatgt gtgggatgtg ggagggtcgg 1380 aggcaaaaga tctcacaggc tgaaccttga gccacatcta atggataaag gttaacatta 1440 agagaaatgt gaaatgctgt gcttaggtct ggaaggacca gcggcgtcca tggtgaggac 1500 aaagcccagc agggctggga gaggaggctt caggtcacca gtgtga 1546 // ID KA520297; SV 1; linear; mRNA; TSA; MAM; 504 BP. XX AC KA520297; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27348 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-504 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-504 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; 4c0a773f7d6a40dcd9994f45cd0a8edb. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..504 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 504 BP; 112 A; 128 C; 161 G; 103 T; 0 other; cctggctctg gaaccttcac acattcacag ctgagcttag cagagccttc ctgtccctct 60 cctcaagcta ctaacccttc atggagctta caggtgagtc agtggacagg gatggacctg 120 ggtaatttct aagcaagaca gagtgtaccc tgtggggggc agaggaggct cagagggcag 180 agcgctgcca ttcgcatggc gtgttgagcg ggtgggacct gggcgtgcat agctggtgag 240 gagggcacgc ccaaacgtaa ggagagtgtg agccaaggca cagagtggga aaccacggta 300 gggtctgtaa aggcaggtgg ttagtcatcc atgagaatgt ggacacagac cggctggtct 360 gggtgtgctt gtgggattcg aatcctccct atgctgcagg cactgagtca actatgtcct 420 cctgagtctg ggggcaacca gagggtggag cagtcaggta agcccttgca ctgcccagcc 480 ctcacctgca cacctaacca cttg 504 // ID KA520298; SV 1; linear; mRNA; TSA; MAM; 653 BP. XX AC KA520298; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27349 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-653 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-653 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; 4d4b0a228b16d82985be0a049cd62c6d. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..653 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 653 BP; 102 A; 190 C; 185 G; 176 T; 0 other; tataatgcat tcttggttgt ttgagctctg ctggaagatg gtcttgttgg tcctgccctg 60 gaagatggtg ttctcctgca ccagggcctt ggcgtggccc tgtactgcaa tgccggaggc 120 ccggaatgaa tggattcggc tttgtgtcag acatgggcag cagctgcagc ccactgcccc 180 ggttgccaat gatgtcattt tccatgacgg tgctgtcacc cttggtgatg acgccatggc 240 ctctgttgtc atagatacca ttgccccgga gctccacctt gcactcggcc tcgatcttga 300 ccccactctg gcggttgcag gagatgctgt tgttggccac acgggtgagc tgactgcttt 360 gggccacagt gatgcccctg actctgttgg cgtggatcac gttggttaca atgtgcagtg 420 cctcactgct ctggatgtac tccgttgtgg ttaacactgt tggactcgac cagagctatg 480 gtgatgggcc ggcgcagcgg gtcgtcgtcc ttctccagct ctgtctccca caagatggca 540 tccccgtcct cgctgaagtt ctcctgggcc ccatggcctc ctgggaattc tccggaccca 600 tccttctggc tgaaccctgc cactccgtac aggccattgt agctgacatg gtt 653 // ID KA520299; SV 1; linear; mRNA; TSA; MAM; 8841 BP. XX AC KA520299; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27350 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-8841 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-8841 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; 56c0d7e3fbc8e9a53309513c0b45ae49. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..8841 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 8841 BP; 1477 A; 2724 C; 2677 G; 1963 T; 0 other; cagaatcacc tttattggag catgacctgt ttggggctta cacccccggc ccccacaggt 60 agctgggggt gggggtcgga gagtataaaa aaggatgagt agagcggagg ctgtggggac 120 tggctggaag ctgctggcag ggtggagcgg gctggggccc tggcaggttc agactgaggt 180 acagcagcgt taataatact ctgggaacgt taatactctg gggaggggca ggcacttagg 240 gggccctagg gcatgaaggc acttggagtc cgggaagggc cagggaacgt gcggcaggac 300 caggcccggg gcttggcagg cacttggggg tgctggggtt gggcaggctg ggcccgacag 360 cccaggaggc tttggtagtg aggcacagtc tctgggctgg gtctgtgata cacacaagcg 420 gctgccctag tgctcgtctc gaagctctga aggtaagaac ttgtactgct gctgccggat 480 ctgcgccagc ttcttccgcg cctcctccag ctctcgttcc ttccgcagca tctcctcctg 540 ggcagcaatg atcttgggca atgcccccga ccatcttctc cttcaccacc acggtctcat 600 tctcctgttc ttcaaaggct gcagccttct gggctgcctt caccaggttg tctgaggctc 660 gcttcactgc gttgccggca gccttgaagc cgcttcattg cctcagagtc ctggtcggcc 720 ttgaccttgc aggctacgag gagctgggct gtggaggcgg cgacctgctt ggccgatgag 780 atgagcttct cctggctggc gtggccttgg acagctgcat tggctgcctc acacaggttg 840 ttggtggccg cagccaccat ccgggcgcag agatgaggcc ctgggaccac tgtccatcat 900 ccagtgcgtt ggctggaatg gcgccgactt tccctgggcc accagttccc tctgtgcagc 960 tgaggcagcc ttcaccaggg cgctggtggc tgctgcgatg gacttggcag cttccagtat 1020 ctgctcctca aagttcaagg actcgtccgc ctcctttagg tttggcccgg ggcttcagct 1080 gctccagctt cttggctgca gcctcaatgg cagctgcggc tcccaggagt tcattctcag 1140 caatgactgt ggggtcctct gggtccaccc attctgttcc ccttcatggc ctcagcagcc 1200 tggatgagct cagtgactga tccagccaca cgctttgagt gcaccgtcaa ctgctgcttc 1260 aattctgggc ttggcttctg cagggtcaag cagcacgtgg tccagcagtt ccaggtagcc 1320 attggcacat tcccggccaa agtgtagggc tcggagccgc acgtctggag ccacttccgg 1380 gtggtaggca gcttcctttg caagcccgga gcatatctgc aatagcacgg cgactcagat 1440 tggctgtggc aatgacatcc tcctggcgac aggagttccc agcggcaacg gccttggcag 1500 ttgccatggt gatacccttg gtcatgcgga tgaaatcttc aggggtagag gtcttggcag 1560 gtggctctgg ggagcagaag accgcgccag ctcctgccga atatgctccg tggtggcctc 1620 cagggcgcgc gtgcctttgg tggcctcatc ctccaccgct ttcacggtct tgagcagtga 1680 tgtcacattg gttaccatca cccttggcag agttcttgag ctgccacaca gcagggtcgt 1740 cgccgacttt gccagccgca gcctttgtgg cactgatgag gtctcccagg gccttggcca 1800 catctttcac tgcattgatc agcaccacct gggtgcgaga gcagaggctc cggtctgtgg 1860 gaggaaaggg gggaacagga agtggttctg gccagagtga ggcgtgtggg gcggcacctg 1920 ggtctctggg tcctcagctc ccaggctcgc tgcacccagc ttgaccacat cggcgaggcg 1980 ggtgatggtg gccacggagg actgggctgc ctgtgccaac ttctcctggc tcccagctgc 2040 attctgcacc aggaccttgg tgtcttccac cagcaccttg gcagtcttca gaatgccctc 2100 ccctgggtct ctgggtcctc agctcccagg ctcgctgcac ccagcttgac cacatcggcg 2160 aggcgggtga tggtggccac ggaggactgg gctgcctgtg ccaacttctc ctggctccca 2220 gctgcattct gcaccaggac cttggtgtct tccacggtgg tcagcgaagg tttcggcacc 2280 ctcacggttg agtgtgccgg cagtggcgaa catgatggtg gtgtccaggt cggcgatgat 2340 gccggacaca gcgctggcgg ctgtgatgca ggcctgggtg ccacgattcc cagcctggag 2400 cgcggccagc acgtgggaga cccttctcag agactctccg ggcacactct atgagctcct 2460 tcttggtgta ggcatcactg gggctgcact gcagggcgcc tgccttggtg accagagctg 2520 cgcagccgtg ccccagctcc tgaacccggt gcttgatgtg ggcgcctatc ctcttcattt 2580 tcagcagcca cagctgcagg cttggcctgg gaggcaagac gcccatagtc actagtcagc 2640 tggttagcga gagggcccag ctcctcaggg ctggtgtttg acttggttac ccatctcctg 2700 aacggtgaca gcaatggcct tggctgtccg caccatggtg gtctggtaat ccacgaagga 2760 accctctggt tcacccattg gtccttcatc tagcctggtt gatggcctgg gtgatggagt 2820 ccaccatgcc accgacgacc ccggcagcac tggctgcctc gttgagggtg gctgtcaggt 2880 cctctacggc ctctgtcatc atctgcacag cctcctccag ggcttcctgg gtgtgagctg 2940 cttgcttggg ggcttggggt taccgccagc ttccttggct gtgtacagca gctgcagggc 3000 agattcggcc aaggttttgg tctggtccag gagcgccatc tgctgtgggt ggctcagggt 3060 tttggaggca gcacccacgg cagccagagt gagcggctca aagtactggg ccatctggga 3120 cacccttgtg tcccagctgg gaggcttcag cccgggcagc actggccagc ggctcaataa 3180 gatgggagat ttcctgcacc gcagtgagca tctgggtgtg caaggccctc ctgagagatc 3240 ccctcacggg gagcgagctg ctggctgacc gcagcaagag aagcctggtc aaggtcccgc 3300 agacagctgt tcagagctgc gatggctgtc tcacactcca actgccctgg agccttgtcc 3360 cctcatgctt gtgatcagct tcttgatgga gtccgagaca gtgcgggagt ggccagccag 3420 cacggaccag cgtggtgggt cccgcggatt gaccgccagg gctcgggctg tctggatgag 3480 gcccccagca ctctccaaca ttgtcttagc agagatcaca atgggctcca tggcagcccg 3540 gcccctcagg gctgatctgg gcaggaacac tggagaactc agggttggac gcaaaggcgc 3600 tcagattgtc cacagcctcc agcaaagggg ctgttgctgc tcggcactgg gcacggttct 3660 cctctgtgaa ggccccatcc agcgcccttg atggtcttga caaggttggc cgtgctgttg 3720 gccacctcct tggctgactg tacgaactgg cgcttggcag tgggattggc ggttcgggca 3780 gaagccaggc ggcagctgtt acacagcgca gacgtgtgtt tggccacaat ggtggctgca 3840 gagagcacct gggcctgggt gcagccaggc tcccccaaac tctgacaggc catctgaatt 3900 gcctggtttg ctcgggcaaa ctgtgtgggc tccaccagcc cttgttgtcc agcttggctg 3960 ttggggtcag acacgccaac cagatatgca gccctgtgca gccgcctcgg tgaagccgca 4020 gagggccttg gaggctgtgg cgacagcctc cccaaactcc ggcaagtttc cgttcttggc 4080 attttgggag atgccggtca tggcctcacc cagcaccctt tgagttttcc atgacgctgt 4140 ccagacagcc aaagtaggac atgtcattga tgggctggac tgggttttct aggagttccc 4200 ggaccgtcct ccaattcccg cagggcattg tcacactcct tctggcctgg cgcctgctgg 4260 gtgcacatgc tgatgagctg gttgatgctg tcggtcactg ccccgggcag ctgcagccag 4320 ctgactcttg agggttgggg ctgcagggtc tgtggacagg gccttggcag cgagaagaag 4380 tttgcttgaa gacatggaga tgcccttcaa gttggatacg acctgagcac gatcctcctg 4440 gctccggagc ctggcctgcc atctccacgc cggcttccag gaaggtgctg aagtcttgtc 4500 caaatcgacc tgaggctcgg gccaggtcct gaggggttcc ccgagaggcc tgcaccagct 4560 ctgtggctgc ctgattcagc ccggcagcgg cttcattcag ccggctctga gcctcctgaa 4620 aggtcccagt gctgggggga agcgagtcac tcaggagtcg cttgctggca tctcccactg 4680 ccctcagggc attgtccaca tcacgctggc caggcaggca gctgacgcaa cggttcaggg 4740 cctgggtcac agctttagcc accctgggca agccgctgct ggctctcagg gtcccctgga 4800 tggccggctg ctttcttcgc ctcctcgatg aggctgctgg ccttgtccag gacatcgctg 4860 gctgtgtcga gcacaatggc ttgcactgca ggatctgatg tcagggcagc tacgccccta 4920 gcggcttggg ctagtgaccg cagcccacct gccacatccc gagctgcaat gcctgcgtaa 4980 ttctcattgc cctgggcgac ctcccccagc agctgggcaa tggcggagct cacggctttg 5040 gtgctgttgc ccaggtcctg ggcacatttc tccatccgtc tccccaggca agggcttcag 5100 cttgccgtct cgagcagctg ccttcacttc ctgcagatct ctctccagat tctgcaccac 5160 actcagagca gaatccattt ccaaaggccc acacgcttcc tgagcccttc tgggcagcag 5220 tacggagttc agccaacgcg gtgccaaggt ttttagcaca ctgactcagc tgcatggccg 5280 atgcttggtc ctgaattgtt ggcacagagg cctttgcagc tgccaccatc ttcccacctg 5340 gcctgcagga agctttggct ggcagcgatg agggctagct gagcactggg gctgtcaggc 5400 tgtgcttggc tccctcggac gccctgcacc agcagtggaa tctgctctgc cacagccttg 5460 gcagccttgc agctctgcac cagcaggggc tgggggccag cagaggcctt gggagtggag 5520 gttgcatgtt gggctgctgc gatggtctgt gtagccgagg ctgcagcctg tttggctgca 5580 tgcctcaagg cgctgcacca gctttttctt gatggcgttc tgtgcagcgg cattggttgc 5640 catgcggaga ccctctgctg cctcccgcag ccgctgctgt tgctcctcac tgtcaggatt 5700 ggcggctgct ccccttggca gcctccacca tcttggctgt ggcatcggcc aggatcttgg 5760 cggcacttaa cagcttgcgg gaattctcca gatcactctc cccctcggca tcagccttga 5820 tggcattcac caggtcagag gtggcttggg cgaggatgcg ggcctgtcgc accatttcac 5880 ccagcatcac ccatggagct gaagatgttc tcggtgacag tgaggatggt gtcagtggcc 5940 tggtcgtagc ggccagcagg cccagcccct gtggcatggg ccctcacgtg ctgcagcagc 6000 tcgttcaggg cctgggtgac agctgtggcc gccgcaccta ccccccgtaa cagctgggca 6060 tcctctgtgg cggcctggga agcggacacg cagccctcca cagccttggc cactagtcgc 6120 ccagcctcta ccagctgttc ttggcagact ggggagctga tagtaggagc caccaccctt 6180 ggtacaggcc accagctggg aggtggacag ggcacactgt gttgccgcag cgatgacctg 6240 ggtctgaagc cctgagtcct ctgttcgctg ggccacactc ttggccttga ggaccagggc 6300 agctgcagcg cttgccacgg ccttggctag ctgcatgagc acgtcccgtg gggggatcgg 6360 ggggagatgg aaacccagcc ccgctgggtg cacagatcct ggaagtgggg gtcagtatca 6420 ctttccccaa tttgttgcaa cagctcccca ctggcctggc ccacgttccc agctgcttgc 6480 agcaggttct gacggggcct cggcactggc tggctgggca ctgcgcagca gctctgacac 6540 cgcccccgcc aggcccttgg ccgcctgcag caggggccgg ccgctgccgc cttcatcctc 6600 cagcagggca gcaagcagct tcacgccacg ggacatctcc gtcaggttgg aggagatggt 6660 ggtgaccgca cagcccactg cagtgtagtc tgtctcagca gggtccccct gctgtgaggt 6720 tcaccacaga ggcggtacca gcggtgatgg cgtctacctg ggagtggatt tcatgcttgg 6780 attcatccat cttgttctta cgccaggcct ttgaggcaag cgtcctggcc cagagggggc 6840 agagtgtcaa agtcatccag tgtggcctgg gcagcctgca cagcctgcat gctggagttg 6900 atggtcccag tgagcgcctg ctgggctgac gtccaaagga ggcatgtgtc ctcggtgcat 6960 ctggccactg gtaatctgct gctgggcagg tggcatgctg cccacctgga aattttcggg 7020 acccgaggct ccggaacgca tgatggcggg cagggccact gagccatgct ccaccttccc 7080 cacccggtta tactgctgct gaagcacagt ggaccttttt gggggacacg gagtcctcca 7140 gcatagtaga ctcctcgtct ccctccagcc caaagtgatc cttgcttttt ttccttctta 7200 aggatgatgt cgatgtagcc agcgatgagc tgagcgatct gctccccctc ggtcgtctgc 7260 accgagtagt agccatcttg atagtccccg aaatccaggg tgaagctctt gggagacgca 7320 gcccagcgtt tgatgttggt gaggttccat tcctggatca cctccttggt cttctcgtcc 7380 actcgcatca cacactcctt agtgatgccc agaagcctgg gcaccaactt gttctttcct 7440 ttcatctttt cccttgacca ggaagaagga gacgccgtac gtcttgaggg aacgggccag 7500 cttcacgtag cgtaccttgg cctcaatctc actcatctgt ccacagttct tgtgtgccct 7560 ctggaagatc ttacgctctc ccttctgctt cacatactcc ttgggcagga agtccttcag 7620 gtcgaggaag ccggccttgt gcttctgctc attgtggggc ccgaactgga tctggcattg 7680 gaagccagcg aactcacagg ccttgtcgaa ggaaacggga tgggagccgt tcaggatgtc 7740 atctcgtgcc ctgcacgtag agaaggttca gctggacggg gtcccgagag tccacgttct 7800 gatctgagta gaagaacttc ctccggagca gaagcgtttc atgctcctcc actccctgct 7860 ccctcagggt ccggccatgg tccagccagt tcacactcgt catctgtgtg caacttctgt 7920 ttcagtttct ccatcttctt ttcatctcgc agcagtgtct tgtcctttcg taaggtccct 7980 gtcacctcct ccttcttctc ttccataatc tctcgaacca gtgaatattc atcatggttg 8040 gtgatgccca atgcgggcac agatggtcat gagcatgtcg gtgacagtct tcgagtcgtc 8100 caccatgaca gtcttcacgg tgccgtccag catgcggatc ttcaagggcc tctgtttctt 8160 cctgtactcc atggtgtccc ccatttcgga gcatgtaata atccaaagcc ttccctgcct 8220 ccagccatat accctttttg gggtcatcat ctgacaaaaa cagcccaaag tcgctgggag 8280 ggccagacag ggcctctggg atccgctcac ggatgatccg acaggcatca tacaccatgg 8340 tagacggctc aaattgcatc gtcttcacca cattcccaat gctgatcttc agcgaaagtg 8400 caaccatggc ggcggcttct tctctccagc ctggctatac cctgcgctgc ccggctctgt 8460 gccccgcccg ccggcccgct aacccgctcg ttctcccggt ggctctcggg ctgcggcctc 8520 gccctccctt cgacactctc ggccacttcc gtcctgggaa cgtcccccac ccgcgggcgg 8580 cgccctgggc ccgcgctcta tggtagcggg cactgcagga agctgctctg gccccagctc 8640 tcgatgctcg ggagcgcgcc cctccccagc aggaagcgag ggtgccgcgc agtcccgagg 8700 aagcgcccga actgcgccct agttcccttt taggctctaa tccttccttt ttctggcccg 8760 gggcggagcc gcttcctcag aatgcccgcc ctcagggact gcgggggcgg aacgcacgtc 8820 ccctctattt gcatcgcgcc c 8841 // ID KA520300; SV 1; linear; mRNA; TSA; MAM; 642 BP. XX AC KA520300; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27351 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-642 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-642 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; eba2b76b3cf56d8671e175f507aa47de. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..642 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 642 BP; 185 A; 122 C; 150 G; 185 T; 0 other; ccgtaagtaa ctgggtgctg cagtgtgggc tgtgtcttaa cctagttaac actacattgg 60 attgtttaca tttatctgct agacagaaca gaagaagact gctttagttt atttcctctg 120 gaaacccttg tgtacctgac tctcttgaaa atgttgatct aaacaaagtt tacatccttg 180 gtggacttgt ggaaaggtga catttcagaa ggcccaagaa cactctgtta ggactgcccg 240 cttaccaatc caggaatata tggttaaatg ccagaatggg aagaactatc attcagagat 300 atgtttgata tcctgtctac ttactttgag actcaaaact ggcctgaagc attgaagaaa 360 ggagtttctt ccagaaaagg ctatgttctc cagaactcag tggaatgatg gagagcctaa 420 ggaggcagct gcaggaggtg aagttgctgg agttgtcttg accaaagagc agagcagaaa 480 atggtggttg tactcattgg cctttacttg acatcttggc tgttcactgg gatgaagagg 540 gaccacattt tatgctcttt tgtatctccc atagtgcctc accacaggaa gtgcccagat 600 atatgttgac taactagaaa gtttacataa caatgaatta gc 642 // ID KA520301; SV 1; linear; mRNA; TSA; MAM; 412 BP. XX AC KA520301; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27352 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-412 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-412 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; e8c0bbcd6fc8b216f680e671d2ada406. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..412 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 412 BP; 107 A; 96 C; 71 G; 138 T; 0 other; gttaaatttt cactgcacag gcatcataaa gttgcatgac tttgtccagc catctcaaac 60 atgctgattt tccccagctc agtaatatgc tatacagact ttgcagggtc agcctgtcct 120 aacagccctg ctttaagccc ccatagcatt ttgttccatc tgtggctcct actttgtctc 180 ccctattctg agtatgggca gtgagtgttt ctctcttcct aatagtagcc ttgtaacaat 240 ttggtgcagt atctttgctt catataaact tgtgattaac aggtcaaatt gaaaagcaca 300 cagtatttta agtctaactt gaagagacag aaaatacatt gcatctgacc ctaaatctca 360 gcgatccttt ttttcatgtc ctagtcaggt agagttactt cagttactct ag 412 // ID KA520302; SV 1; linear; mRNA; TSA; MAM; 950 BP. XX AC KA520302; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27353 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-950 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-950 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; 0df053b863057f89b7a5d32c7c0755d9. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..950 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 950 BP; 202 A; 310 C; 191 G; 247 T; 0 other; ctgtaataga cattatgtac attcacatct tgtctcctga aaatttaatg tggaattcac 60 ctgagaacct tttccccagg aaacccagtc tcttggttca gttcagctct ctgccaatct 120 ggagaagatt tgttttcttt gatctgctgt catgtgttca caagcttcta aaatgtttgc 180 caaaatcaga gtctgctgaa tggtttttgc cttaacccat attcttccat tcattccaaa 240 tactatctcc aaggggtaga gttttcccac ttcttgtagg atttcgcact cttttctaat 300 taagcccaaa gagcctttaa aaagcagccc atcctgtcca atcacaccca ttccattggc 360 tcgtccacag ctgtcaatac agaccatctc tggttccata tctttattag caaccacaaa 420 ctggccatag atcaacctgc acattaggtc tgtttctttt agttgcacct tcaaatgcca 480 agtaagacag ggaagctggc tcactccctc caacatcaac tttgaatatg tctccagact 540 tagctgtcac tatgccaatc acatggtctc ctttccgctt ctgctgcgag tccacccagt 600 aaacgccacc gccgctgcca ctgccaggtt ccttgtgacg gagccggccg cacttggtga 660 ccagcagtcg gtctccgcag cgccgcaagc ctgggccgca caccacgcgt ccccgggagc 720 gcgctgcggc gtttaggcgc agcggtcgct cccctgcacc tcctgggccg tctccgtcct 780 cctgatctgg cagcagcaac tcctcgcccg gcagcaccac ttgatctagc accgtccgtg 840 ctgcccgcgc cctgcagcca gccagggact ccgctggaac acccgctgct ccggcttccg 900 gctccgcgac caatcgccag ccctcccaag actttccgtt tccggcaaca 950 // ID KA520303; SV 1; linear; mRNA; TSA; MAM; 914 BP. XX AC KA520303; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27354 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-914 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-914 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; 437cf84e52898ab51755e134ff6295b9. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..914 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 914 BP; 268 A; 217 C; 156 G; 273 T; 0 other; tagcacattt ctaaactttt tttttttgca atatctttat tatttcaagt aatttatata 60 ttgtttttct tctatcagct gagataatca gagacaatac aatttgaatt tggggaagac 120 gagcatcaca tacgttccca ctgctgtatc acacccagca ggagtcttca ttatgtttcc 180 acactgtccc ataaaaagta gtcttcagtc tcttggtatc acaaacatat gtgcacttag 240 ctacttaaat gacatgtttg tgtgctggct tccataaaac ataactaatg gagaggactt 300 cttcaacaaa tatactccaa acaaaagtaa aaaagtacac agaaatgact cacaagacag 360 ggccagagca gacataattc ccttataatt catacttgct agaaaatgga gtttgacatc 420 gtgatgtaca attacaccaa cattcattga ggctgatatc acaggtataa gggaatacta 480 tgactgtaaa acgtctcttc atactcgcca aagagtttta gctataaggt cagttaccag 540 cgccaaagtt gttcttaaca agtagaattt ttatgttcat tcattcgaag agtctcttac 600 atctttctgg gcctattcat ttgcagatag gagaagaaac tgtaaccagg ttcttcatac 660 catgcattca cacgtgacac ccactcttca tatgctgtcc aaactcttca tatgctgtcc 720 aatttcttag tgactcgcaa cagggccaca tagatgagga agttccgtat ggaagagatc 780 acatcctcgc gcatcttccg tttcatctcc tccgggtcca gcttcggcgc aaggccctcg 840 atccggaaca tttcagctct cgctaacggc ttccagctgc caccctctcg gatcttctcc 900 gcacactccc agcg 914 // ID KA520304; SV 1; linear; mRNA; TSA; MAM; 865 BP. XX AC KA520304; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27355 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-865 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-865 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; 3d7ae9fdf4c247d3e9d7d52d80be65bb. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..865 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 865 BP; 259 A; 189 C; 241 G; 176 T; 0 other; aaaagatcag ataggaaaac caagagtcag tgcagaatct ctaccataaa taaagaggac 60 tgaggagtga agcctgggac acccagaggt tagagatgaa gagccagcaa aagaatctga 120 ggaagggtgg gtgagtggaa cagaaaaggc agataagagg aaaatcaagc aggcctggta 180 aggtggttaa aatagcaagg aagtgtgttg aatgctgctg aaagggcaag acaggttagt 240 taaccttgac aagagcggtt tcaaaagatt ggtggggatg caaacctaac tggaatgggt 300 tcgggagata acaggaggaa ggaatgaaaa tagaaacagc cttcttgaag catttaactg 360 agagcagaga aatgggatgg aagacggaga ggggtgaggt ttcaagagca ttatggtgga 420 tgctgtgctg aaccacccag atttcaactt tggatgaagg aactcaatcc gccagcagct 480 atgagggttg gctacagata ccacacagct gcatccccct caggagatgc cttcagctga 540 aggaagctgc ctgcatacag tacaccagcc cagcagcccc tgtgcagtgg ctaggcaatg 600 caagggcaga aaggccctgc cctctggcct tgcacaggac ttctctgaag ggccatcagc 660 atcagatacc tgtgggactg actgaagctg gtttttcaac cagggcgact attctggctt 720 gcccaggact gaagtttccg tgctaaactg ggatagtcct gcatggtcga tcaccctatt 780 tgcagctgca ccacagttca acttctcctc ctgcccaaac ttgtttcact tgctctcgga 840 aatgcttccc cttcccccca agaac 865 // ID KA520305; SV 1; linear; mRNA; TSA; MAM; 517 BP. XX AC KA520305; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27356 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-517 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-517 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; 13e87a362fd39683d0157f663f78f4a8. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..517 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 517 BP; 164 A; 75 C; 157 G; 121 T; 0 other; tcggggaaag aagaagcaac actgtcacct gagcttgaag ataaggggag atcctagagg 60 tctgagaagg tgtgacatgt ctatctagtg gattagaatg aactaaggaa atgcagtggt 120 tctacaggac ccagttgagg ttcaacagtc attattttcc aggtaggatt taaccaggac 180 ggggttttgc cagaaaagta caatgacact agagggaggg aagagatttg aaggtgtatg 240 caagaatgat tacaacactg gctagtggag tgagttgagg catgaaggtg gtgaagcaca 300 gagacgaggt ggcaggataa acattatgag agggtctagt ggggctgagc tatttgtact 360 ggaggaaaga aatcaaatct aaatctgggc tatggctgtg gggttgagtg attaaggaag 420 gctggggtct gaaaatgact tgccagagaa agcagatctt ggcaggggga aactttcaac 480 ttttccccac caaatctaaa cctttattaa agtagca 517 // ID KA520306; SV 1; linear; mRNA; TSA; MAM; 767 BP. XX AC KA520306; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27357 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-767 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-767 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; 3f4355b4478ea0f0008bec3f1ee350c1. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..767 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 767 BP; 221 A; 187 C; 144 G; 215 T; 0 other; tggagatgct agatgggcag atggatagcc aaacatggcc aacatttcaa tttgaaataa 60 acatcgggac tttctactag atagatggta agaaaagata atccaggacc agaaagtact 120 tcaagcctga tcagtgaata ataaaattct gccaaagacg atggaacaga taagggattt 180 accctagatc tgaagaggat gaggccacaa taacaggaaa tgaggaagga gtggtataaa 240 cgtattggtt tactgctgct gctctaataa attattcaaa cttacaacaa cacaaattac 300 cttacagttg tgaaggtcag aagtttgaaa caggtcttga ggggttaaag tcaaggtgtc 360 tgcagacctg tggcccttcc ggaggttctg ggggaaaatc tgtgccccac ccttcccagc 420 ttctggaaca cagaggcagc ccacattcct tggcatgtgg ccttatcatt ccaacctctg 480 cttctgttgt aacatcttct ctgactccgc tttctttctc cctcttctaa aacccatgtg 540 attacactgg gtccacccag ataatctaag atactccctg cacctccaga gtcttccctg 600 aattcattct ttcccctaca ctacattcct ccgaatcaac atgtactggt ctgctcattc 660 catcctcttt gaccttccct tctatgcccc acattgcatc taggtttaag caagcaattt 720 tgaactcctc ttgatcaata tgatttgaac accttaatca attccta 767 // ID KA520307; SV 1; linear; mRNA; TSA; MAM; 510 BP. XX AC KA520307; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27358 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-510 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-510 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; 383673ca9d133e161e5abedadcaa65b4. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..510 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 510 BP; 200 A; 88 C; 105 G; 117 T; 0 other; caagcatctc actttaaaat aataagacag ttctgtaatg tcggaggctg tttcacactt 60 tgccagattc tgccctgtac tttagagcag gtgtcccata agccaaactc agtttgccgc 120 aaataagccc tttttccagg aaagacttaa gacataccct catgacactg aacactgagc 180 aatttaaata catggcgaaa agtttagctg atttagtgtg ataagttcag aaaactaagc 240 ctaggaaaat caaaaggata tgcaggaaaa ggcaacaaca aacagtgttt ggagtcctaa 300 tgaaatcaat ctaatgaaaa tcacactaat aagtacacag aaaggaagca gaaatgagag 360 acagaggtaa ggacagggaa gagacataat cctcacatgg aggagaagtc agcaggcaat 420 gtctaaaaca gaaaaatata gtaacaacat aatcgttatt tatagacagg aaggtaaact 480 cagtgtaatt cttgaaaaag aggtgaatgt 510 // ID KA520308; SV 1; linear; mRNA; TSA; MAM; 634 BP. XX AC KA520308; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27359 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-634 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-634 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; 2037b26c46c66c4ad4ff633fa38064a7. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..634 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 634 BP; 123 A; 211 C; 171 G; 129 T; 0 other; ccactaccgc ccagggctga cgcagcccct cccccgtcgc ccggcgggag ccctcgcagt 60 ccctgcgccc cctcggagcc ccccggcggg cgcggctcgg gctccccgga gctccagagt 120 cctcagccgc ttccgctcaa ggagatcctt caccgccttc cccgccacgc cggccacccg 180 gggggagccg tggccagccc tgcctcaaag cccgcctggg cggccctggc gcacggctct 240 tcgggtggct gagagagcgc agcctgggcc gcgggctgtt cgtggacccg gcgcgggaca 300 atttccgcac catgactaac ctctatggtt ccatccatcc cgcggattcg gtgtacctca 360 gcacccgcac ccacggggca gtcttcaacc tcgaggtcag tgctgacagt tgcttgtgaa 420 cagactgaag ttctactttt tgaagactgt atttcttgat aaccggctgt ttgccacctg 480 ttctgatgac actacaatag ccctatggga tctgagaaaa ctgaacacga aagtatgcac 540 tttacatggt cacactagct gggtgaagaa catcgaatat gatactaata caagactctt 600 agtaacgtca ggatttgatg gaaatgtcat tatt 634 // ID KA520309; SV 1; linear; mRNA; TSA; MAM; 658 BP. XX AC KA520309; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27361 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-658 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-658 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; 9362e9a5a27126c6014b53645dba2c60. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..658 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 658 BP; 163 A; 160 C; 146 G; 189 T; 0 other; tgattttgca tgatcttgac ttaaccaagt ctttagaagt aggcagctat cccattttaa 60 gggcaagaag aacatcttac cactttgtcg agttcgtctg gtcctagagt ttctggctca 120 ccttgtcatc acagtgattc taattcatct tctgagaaac acatgtcacg cacgaatttc 180 accacgaaat agtcttgaag tcttaacccc tgaagttcct ggtgagagag accgtggaaa 240 ctgcatcaca tccttacagc tgcacccaaa aggctgggcc actcttcttc ggtgctcaag 300 caacatggac ttgtgtctat gaattccaag aaggagcacc tgtgagacca gttgcacctc 360 gctgttctct acgcctgact cattacattg aagaagccaa tgtaggcagg ttatatcaaa 420 gaactttgct tcagccctga tgggcgaatg atttcgtccc cacatggata tgggattcgc 480 ttgttggggt ttgacaaaca gtgcagtgaa cttattgact gtttgcccaa agaagccagt 540 cccctgcggg tgatccgttc tctgtactct cacaatgatg tggtactgac gacaaagttc 600 tctccaacac attgtcagat cgcctctggg tgccttagtg gacgggtttc tttgtatc 658 // ID KA520310; SV 1; linear; mRNA; TSA; MAM; 345 BP. XX AC KA520310; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27362 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-345 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-345 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; 522a51ec1a22ceac50ca1a881b03a9cc. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..345 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 345 BP; 83 A; 66 C; 80 G; 116 T; 0 other; gaagagataa cttccatttg ttttcaagct gttgtcatga ctgtggcagt cagtgactcg 60 gctgtcaaga cctttttttg ttatggaaca cagcaagtaa aaagcatcat gcaggggcca 120 ggcataaggc tgactactct gctgatgcag gcagcttttt tctagtcttc tctgctttga 180 atgggattat ctttagagga gattttgcca gaggttagag taatttgagc cacgtgctag 240 ttttttccct cttagaacat attctcttag gccagtggtt ctcaaacatt tagggtgcat 300 tataatcatt gatgtgaaag tcgctcagtc gtgtccaact ctttg 345 // ID KA520311; SV 1; linear; mRNA; TSA; MAM; 321 BP. XX AC KA520311; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27363 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-321 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-321 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; c99b90744c381fa05622534ca03e5e1d. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..321 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 321 BP; 89 A; 79 C; 58 G; 95 T; 0 other; gcacatgaga aaacagatta ttttcaaaga atcaagtccg agtgcttacc ctgtctttaa 60 atgtgatcgc cactgcacct tcattttgac tgcatacccc tcacacgaca gtacttcacc 120 tacactgaat agtcttggtc agtatgactg gcttaccgta aaggcctcca ggaccaccgt 180 cgtcgtcatc ttaaggtctg tattgcctga taactgagtc tcaccatgtt atcaagctag 240 ggaatttcag gtctccaaag ctgattatat acacacagtt ctgtttcatt gcacagttca 300 caatatatag caggtgatta t 321 // ID KA520312; SV 1; linear; mRNA; TSA; MAM; 596 BP. XX AC KA520312; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27365 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-596 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-596 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; 92e188e3c35c64575da185483d841c93. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..596 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 596 BP; 134 A; 134 C; 150 G; 178 T; 0 other; gtcatgatgc ctgtggtcct gaagcaatgt ttggactctt tccagtggag tgaaaattgc 60 ttctgttgtc cctgcaagga ctgcggccat gctgcgggtt gcaaactctg gggtactgac 120 atgcttacgg agaaggcaag ataaatcctc atacagacca aacataagtg ccagtgtggt 180 tgtcttctgc attaatgggg ggaggattcc gcgatacaag tttcgaaatc cgcccgggtt 240 ttgattccat acagctgttg ccgaaagaga accttctgaa tgggaaatgt gattgctatg 300 ttgttgaatg ctgcacagca gccacacagg taatgcttca tttcactaac agttgcaata 360 tgaggtgcta tatcttgctt tgaagatgtt aggattgggg gcctcttttc atgagcttct 420 gaatccatca tgttgcttaa gatctttctc cgtcacaaac tgaaacgcca tctgggcccg 480 gtgttttggg ggagggcagc tttacaaaga ccttctcgat ttcttccatt gttactggcc 540 tgttaggttc actttccaga gtcaactgtg acgcttccct ggcgtccatt tccccg 596 // ID KA520313; SV 1; linear; mRNA; TSA; MAM; 866 BP. XX AC KA520313; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27367 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-866 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-866 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; 938cd29febc61c3814a6c677165e44a4. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..866 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 866 BP; 169 A; 263 C; 249 G; 185 T; 0 other; ccggcggctg cggggtcaat gaggccagtg agagtcatga aggtgttcat cacacgcagg 60 attccccccg agggcagcgc cgcgctctcc ctttgtcttc gactgtgagg tggagcagtg 120 ggattctgat gagcccatcc ccagagagga cctggaacag agaatggctg gcgcccatgg 180 cctgctctgc ctcctctcgg accgcataga caagaagctc tgcaggagct aatctcaaag 240 tcattagcac aatgtctgtg ggtgtcgacc acttggcttt ggatagctct ttggttcata 300 gtgggatccg tgtgggctac actccaggtg tcctgacaga cgccacggcc gagctcgccg 360 tctccctgct gcttaccact tgtcgccggt tgccggaggc cagaacggtg gttggacctc 420 atggaaaccc ctgtggatgt gtggccacgg cctctcacag agcaccgtcg gcatcgttgg 480 ccataggcca ggccattgct cggcgtctga aaccattcgg tgtccggaga tttctataca 540 cagggcgcca gcccaggcct caggaagcag cggaattcca gtgtccaccc ccgagctggc 600 tgccgagtcc gatttcatcg ttgtggcctg ctccttaaca ccagtgacca gggggctctg 660 caacaaggac ttcttccagt ggatgaagaa aacagctgtg tttgtcagtc attcccaggg 720 gagaagtggt agaccaggat gacctgtacc aggctctggc cagcggtcag attgcagctg 780 ctggactgga cgtgacgacc ccagaaccac tgcctaccaa ccaccctctc ctgaccctgc 840 tcctttcctg tgatcctgcc ccacat 866 // ID KA520314; SV 1; linear; mRNA; TSA; MAM; 759 BP. XX AC KA520314; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27368 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-759 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-759 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; 19fede6c45dde898478a27915d016bcf. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..759 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 759 BP; 156 A; 222 C; 152 G; 229 T; 0 other; tgaactgatt ctaactaata catggctcag ctgaaaggtc atcttctccc aagaagtcgc 60 aggaggaggg aacctgggct ctctccttgt gcttccacag acttcagtga gatttagtca 120 cgaattcgtg tccgactctt tgcagtccca tggactggag cccgccaggc tgctccgtcc 180 atgtgatttc ccaggcaaca atattggagt gagttgccat ttccttctcc agcggatctt 240 cctgactcag gaatcaaact gcgtcttctg cttggcaggc aaattcttta ccactgtgta 300 cctgggaagc ccccttgtgc ttccacagaa ccagatgcta atacttgtta gaggtatatg 360 acaatttatt gcattcattt tgtttaggtc agtctctctg ctgtcttctc agctcctcca 420 ggtgggaacg tgttagattt atccaatgaa tctggcccag gagtcagggt tcttacccag 480 gcctccaatt tctatgtgat ctggtccctg tccatgcctc cagcctcttc cagaaccatc 540 catccctttg ctcttcttgc ttctgtccca cttgtcttct tccagttctt tgaatacact 600 ccgacccctc tcacctccag gagtgagcac atgcctatcc ctattacctg caacttgaac 660 ttgcctcttc attcagtggg gctctactaa tctttcagac ctcattctcc actctcgcta 720 cacagagcat gggcttggca ctagcagcat tggcatcac 759 // ID KA520315; SV 1; linear; mRNA; TSA; MAM; 2259 BP. XX AC KA520315; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27370 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-2259 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-2259 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; 1a606b2b70be5c793b942ae03deea110. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..2259 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 2259 BP; 297 A; 770 C; 789 G; 403 T; 0 other; gttggggggt gggggctggg gtggcgcact ggctgtcctt cagtctgtat ccaggccttc 60 tccagccccc cgcgagtggc gacagcattc taagacatgc agtggtgtgc tagtaccata 120 cacacgacac aaactggaca cggctggcaa cagcggccgg gggccaccgg ctccacgtct 180 gcgccccggc tcggcggggc ggggctcaca gggtccgcac agccacgggg tagaggaggg 240 acaagtgctc ggcgcctttg atgggcagct tcctggtggt gtagtagtgg atgacctctg 300 ggacactgtc gaacgggggg ctgttctgac ccaggacgta tttctctttg gttttggcca 360 gtttcatgtg catgatcttc agggagaggg agtagtcgtg cctgctggtc tggctgttcc 420 ggacaaggta gctacactcc ttacagaggc gcagcaggtt ctcagcgtcg cccctgctga 480 tggtccctga ggacttacat ttgcttctcc agtggcacag caggatccac tctctctccc 540 aggatcccac agaactcagg gctcccatgt ttgatgggct tgaagccccc tccgggagct 600 cgaagctggc gccgccggtc ccgggaaggc gagggggatg actgccgctt ctcgctggct 660 gccagagctg ggatagtgac ccggttccac tcccaaggct gatcgtactc gtcggcgggc 720 ctgtcgtcat cctggggcag cttgctctcc cgcagccggg ggctgatcgt gctctctgag 780 tccgagtcca cgctttggcc ctcgggttca taaggggtgt cgtataactg gatgcctttg 840 tgctgcgacc ggacgctttc cagtcatgat cctctgggcc tcatagggct ccatgtagcc 900 tgcgctctct ccctttcctg ctttgctttt gagatcattc ttggcatcaa aggggtccga 960 gtagtcttgt ccttcttgcc ggcaccgctc tcctccgcgg ccgaggcgcc gcacttgttg 1020 agcagtttct tgcctccgca ggccgttggg ctccaggtac ggccgccgga gcaggcgccc 1080 cctggggggt ccccggtaca gcccgcggcg ctctccacct taatgaggcg atgcttcggg 1140 gagatgtagc gcacttcggc cgggggggcg ggccgccgct cgctgctgct gcggtagagg 1200 tgcggggagc cagaggacga ggacgaggac gcggcggcgc ccgcgccgga ggaggcgcaa 1260 cagcagcccg cggcgcccga agcggacgag gcggaaaagg cgcgctggct cccacccggt 1320 tccccgccgc cgcagtagtc caggcggcac atggcgcgca atttgcgcag cgacgagccg 1380 ggcccgttgt aggggtcctc aaagtcgcgc tccttctgtg cgcggtaggc gcggatcagg 1440 tcgctcgtgc tgccgctgtc gtcgggcagc gatcccgacg aggccgagaa gcaggaggcg 1500 gcggcggtac cgcaggacgc ggaggcagcc gcgggggcct gcggcacggc ctgggggggc 1560 tgcgagggcc gctcgcctcg gcgtcgctgc tcgcggtagt cgggccgcgg cggttgcggg 1620 gggctcttgg tcttgctgtt gcccaagctg aagtacttgt tcagccactt ggccatggcg 1680 agaggccgcc tagggccgcg gcgcgggagc cgggtccgcc gccgcggcca ttcggggggc 1740 agcgatgccg cccaggtcct ttggcgcccc ggccccggcc ccagcgaggg gcgtccgggg 1800 cgcccgctcc cgacgccaag ttcaagttct ctccgctgcc tcctgccggc cgctcccccg 1860 ctccggcagc tgcagcaccg ccccccgcct ccgccgcgcg ccgcccgggc tttggatctc 1920 ctgccccttg cgggcgcgtc tcatgggatc cccgccgcgg ccccacggat agcgaaaggc 1980 ccgggcgacc ccccgctcct cagacgctct ggccgtgcgc tctgccacgg agcgcgctcc 2040 tgtcccgtcg gaaccgcagc ctccgcctcg gccggaatcc gcggctgctg ctggaacttg 2100 tcggggtcct cggcaccccc cgccccgact tcttccttcc ccagagcgct ggagcgagct 2160 cggccctctg ccggcgagca atcgggccgg agagcaagcg agcgatggag ggagggaggc 2220 agccggcgcc cgccccagcc cgcgcgcccg tgcccgtcc 2259 // ID KA520316; SV 1; linear; mRNA; TSA; MAM; 1176 BP. XX AC KA520316; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27371 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-1176 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-1176 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; 098f9bbde45d2d0ea86650dcc1d4ea37. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..1176 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 1176 BP; 322 A; 303 C; 327 G; 224 T; 0 other; ctctcatctt ggaaccagga gcacttcttt taaaaaagct ggctgagtct gacgaggatg 60 tcaacaatct cttcaaaaag gtggaaaacg acagcaacct cgaaccctgt tggagctgag 120 ggatcaggtg gccgagaagt tcctgctgca gaagcaggag atcaaggagc tggatgagac 180 actgcactca cttgagttac taaaaagcgt gttgaagaaa tatgtggaaa tcatagagaa 240 aacttcctac ctcatgcagc ccgacgtgta taagctgatt aacctgccca cctgtgactg 300 cagatcataa accacgccct gctgggcaac cggagggccc tcgcccagct gttcgtcaac 360 ctgatggaag ccaggctgca gcaggagctt gatagccccc gccgctggca gggcctgatg 420 gatgcctgga agactctcaa gaaggagtat cctgagttca tggccagtga gaggatccag 480 actcctccgg ctgtgaagaa agagcttgag accatgatgc agaaccagag catcctgcag 540 caaaagcgac tggaccacac cttccttccc cagtgacctc ctgcccccca attacagcaa 600 agctcagctg atggaatggc gttcttctct cgactcgacg cctaccacat ggactgcatg 660 atgcggatcc gcttgcagta cgagaagatc tggcaggagt gcctagccca aagcagctgc 720 tggactggaa ggccttcact gaagaggagg cagagagcct ggtgagcccg tccttcttcc 780 agatggtggg atgtctccag agcaaggtgg aggaggaaaa tccttcgaga ccgtggcaaa 840 gcagacagag cggcagagct cagacctctt cagctacttc caggaggccg tgaacctatg 900 ggagacacat cagagtgtgc tgttgatgca ggagatggag ctcgagaaga ggatggagca 960 gcagcggcag aagcagccca ggaggctcat cttgacaagc tcttggacca actgaggcag 1020 caaagctatg agaataacct gaagtcacac ctggaaaagg ccaaggattt tctgaagcag 1080 gtatgaggct tttcatggcc tcctgacaaa ggaagtgatg gagtacccag tgatcatatt 1140 gaaggaactc aactcctaca gctcccacct cagccg 1176 // ID KA520317; SV 1; linear; mRNA; TSA; MAM; 2701 BP. XX AC KA520317; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27372 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-2701 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-2701 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; 58942c75c7a17a3e2756a17e375bf0cb. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..2701 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 2701 BP; 821 A; 634 C; 718 G; 528 T; 0 other; cttggaggga gaagtcattt tcaaccacat gaaaagcagt tccagaagag aatgagaaga 60 ccgagaggaa aacgaagatc caaagcaaac acgcgcaaag gtgacgaaag cgacagtgga 120 aggacgagtt ccctcaagcc agccgaagag atagaagaag aagaagatca agaggccgag 180 tcctccacca cacaagaggt gaccctgagt ccacaggaga agtccgtact gagtgaagag 240 atggatgagt ccagggagga ctctatttca ggactggaag aaatacaggt tgaaagagac 300 agctccttga gatcaccccc aaaccaggcc agtgtgatgg ttcacgaaga agaagaggag 360 gagaagaagg aaaaggtgga ggaggagagg gagaaggagg aagaggagga ggagcggagg 420 agtgaggtca aagcccagga ggagagtcta ggggagatct cccaggagga gatggagttc 480 ttcacaacct ccagtgggaa cacttacttt gttttcctac ccctgaaaca agaagagaac 540 agcaagacac cccactccaa ccttcctgcc actctcttca aggacatttc cagtgccagg 600 gtcttagaag aagtgatcat tccatccaga ctagtttgct tcgaactggc ttttttgagc 660 acttggagaa atggtttgac caatgtgccc tcaatgctcg ggtcatcatg gccagcaaga 720 ttgatgagct ggattcagaa ctggagctgc gtctgcacct gcaccagcca agagcccagc 780 acattgagaa ggacatccag ctgagctctt gcttcatcaa gaacggctga acagccactg 840 tgcaggggtg atggagacac tgaggaagga gaggatgatg ttctgccagt tccaagaaga 900 gcaaaacttg aagagcaaac acttccgccg caagatttct gacatggagc acatcttctt 960 gaacggctgg caactctcag cagcactgtg cagcgggagc tgctcagcta cgtcgacgtc 1020 atccaggtgt cgctgcgcag cttccgccag tacctggagg agagcctggg caaactgcgc 1080 tacaccaaca ttgagtattg ttttcagagg gaggcaactt ctcttctgaa gaaattgact 1140 cactgtgtca tcgaccagag aaggaagctg cccggataga gtttgttgaa aatttaatca 1200 tgatcaacat ggaaaagatg gagaggctaa tgagttcatc agcaagtttg aaagtaaatt 1260 ccataacctg tctgtggacc ttattttcat agagaaaatc cagcgcttgc tgacaaatct 1320 gcaagtgtgg caaaatccaa tttgcagaac agcttcaaag caaggtagaa atgtgccgaa 1380 actcctccat gttctcacta ggtagtgagc acagaagacc tccttggcct tattcgaact 1440 tggaaagaaa aactgagcca aaggattgag tatctcaact gcaagctgga catgatatcc 1500 atgactgctc tttggcctgc aggacaacgt cttgactgac ctggaggtag agagtgacat 1560 cttgttatct tcagaagtct atgaagaaga ggctaaggta gacatggtca cccctgagtc 1620 ctttgccccg catggggaag accatgattg aagacccagc cgtggaggtg ggtttcctga 1680 ctcaaagtcc tcaacccttc agtgcgacaa accttgaggc gactccggaa ccgagcagag 1740 cactccttga agaaggactt gtccatcgcc agtggacagc gtcacgcggt acaccaagcc 1800 caaccgactg gatagaaagt atcaggtgct cggtgacagc ggaagagttt taccgcaaag 1860 agaaacgctc agtcaccagg cccgactgca tgtacgaaac cttcgaccag tgtgcagaga 1920 acatctgtaa gaagatcctg gagtaccaca gccagacaga caattactac tagaattacg 1980 ggcccagatg aggagatttg aggagcttct gccccaggtg tgttggctgg tgatggagaa 2040 tttcaaggag caccattgga aaaaatgttg cgcttccacc aaagatatcc gaggacagtt 2100 cttgaattac caggaagaga aggatgaaaa tgcccagaag ctccacccaa atcttggaca 2160 ccctgcacag ctccaagata tggagtctct atgtcaagtg gaagagaaga ggcagggaga 2220 tttggacgcc ttgattgtgg taacggaatg cataaggaaa tacgcccggt ttttcatagc 2280 caccttggcc accttcaccg agaagttcct gctgcagttg gatgaggtgg tcaccattga 2340 cagatggagc cccccaaaca gaaaacctca atcctaatac ggaggaaact caccgggctg 2400 tccctggagg aagagagtga gaagcccctg atcagaaagt ggccaggaat caaacctact 2460 gaagtcacca tccaaaacaa gattctcctc cggaaaacac catgtatcac aaccaccaaa 2520 acaacactgg gccacctggc atccgtggaa gcccgaaaat atttagcatc atttgaagag 2580 gagctgaaga aggtccagga gcacaccgca ctgcaggtga aagaggctca gcgctggaag 2640 gacagctgga aacactccgt gaacatcatc cagggcctgt acttgtgaca ctctcagccc 2700 t 2701 // ID KA520318; SV 1; linear; mRNA; TSA; MAM; 3193 BP. XX AC KA520318; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27373 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-3193 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-3193 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; f5d51cd2b7ec7794389d1a7f8f261ff9. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..3193 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 3193 BP; 955 A; 704 C; 738 G; 796 T; 0 other; gctgtggccg ggaagaagag ggcggcggga gccgggccca gaggcgctgg gacgggccgc 60 ggtgaagatg ctggaagcag atctggtttc aaaaatgcta cgggctgttc tgcagtctca 120 taagaatgga atagcattat cccggctcca aggagagtac agatccctaa ctggagactg 180 gatccctttc aagcaattgg gctatcctac actagaagcc tatctgagaa gtgtgccagc 240 agttgtcagg atagagacat aacctgctat gccatggcct gcacagaaac tgcaagaatt 300 gctcagcttg tggctcgaca gaggagttct aaaaggaaaa ctggtcggca agttaattgt 360 cagatgagag taaagaaaac catggaaaac caaaagcaac cctcagacaa ccaggatttt 420 cttcagattt ttctgtcagc aaaaaaccta attcaacact attaagaaac aaaggaatct 480 ctcttggagt taaatctgat gctgaagtgc tgccttacac attacaaaca gctattggaa 540 atgaagtatt caaagatgtt ccagtgcaga gtcatgtgac cagtttagcc caaaggcatc 600 cctcccgcca cgttttcaga tgcatctctc aagaacctgt ataatttaaa tcaggctgtt 660 gaaaaaccaa atgtcacgcc tcctgcctct tacacttata aaatggatga ggttcaaaac 720 cgcataaagg aaatactaaa caagcatagc aatggcattt ggatatctaa gcttccacat 780 ttttacaaca atttgaacac tggtggaaaa accttgcagt ggtggtcagg atttacttct 840 ttatccagct aagagaaagc agcttttgag aagtgaactg aacgctgaaa aagtgcctcc 900 atccccacta cctgctccaa aacaaatacc accactcaaa gggtgtccag cagttatgcc 960 aggagacttc aaagagaaag ttgcagagct gttggtgaaa tactcaagtg gtctttgggc 1020 cagtgcactc ccgaaaacat ttgaggacat gtacaaagtg aaattacccg aggatgcctt 1080 aaaaaatctt gacttgcttt ctgacgtatg caccgtagac tacatttctg gaaatcccca 1140 gaaggccatt ctctatgcta aacttccatc gcccgctgac aaaatcctaa aggatgcaga 1200 ggaagcacgt ggcaattatg atatcaagtc tacggttgaa caagaatatt tgcagataga 1260 agaaaacatt gctgaaagta cggacacctt tatggagact gtgacaatcc ctccgttaat 1320 cattccaact gagacatcac catcagtctt ggtggttgaa ctgagcaaca ccagtacgtg 1380 ggcaaagact actctgctgc tcaagaatta atggaagatg agatgaagga gtactacagt 1440 aagaattcta aggtcacccc agtccagact gtgcagattg gccaactgct ggctgtaaat 1500 gctgaagagg atgcttggtt acgagcacag gtcatttcaa tggagtatgc tatgttgact 1560 atggttttag tgaaaatgtt gaaaagagca aagcatacag attgaacccg aagttctgtt 1620 cactctcatt ccaagctaca ggttggaagt tctaagtgat gatcctgatt tagtgaaagt 1680 ggtggaatct ttaacttgtg ggaagatctt tgcagtggaa atacttgaaa aaacggacat 1740 tccactggtt gttctgtatg atacctcagg agaagatgac atcaacatca atgctacctg 1800 cttaaaggcc atatgtgaca agtcacttca ggttgatgcc atgtacacta atgtcagagt 1860 gactaacatt tgctccgacg gcacactcta ctgccaggtg ccttgtaagg gtctgaacaa 1920 gctcaacgac cttctgcata agatagagga cacatgactt ctgagtactt cgtttcatta 1980 cccttcgtgg gaaagtctgc ctcttccact gcaaaggaaa atcacaaatg tgcacagcag 2040 ccgggccctt gacgttcagt tcctggacgc tggcactgtg acgtctgtga aagtgtccga 2100 gctcagggaa atccccccac gatttctcca agaaatgatg ctatcaagtg ctgtttagca 2160 gatcttccac aatctattgg catgtggacc cctgatgctg tgctttggct aagagattct 2220 gttttgaatt gctcgttaca aaagtggatg aaaccagagg tatcgcacat atttatttat 2280 tcacccccaa gaacttccct gatcctcacc gcagtatcaa tcgccagatt acaaacgcag 2340 acttatggaa acatcagaag gatgtgtttc tgagtgccat atccagtgga gccagctccc 2400 ccaacaccaa aagtgcgaac acccccattt tgggcaacac tggagagact ttcagaaaga 2460 gcctcacaga tgtcctcaag aagtctgtgg tcaaccaccc cagctctttc tttacaaagg 2520 aactgccacc tcctgtccac ttatccaagc caggggaaca catggatgtg tacgtgcctg 2580 tggcctgtca ccctggctac tttgtcatcc agccatggca agagatacac aagctggaag 2640 ttctgatgga agagatgatt ctgtattaca gtgtgtctga ggagcgccat gtggcagtgg 2700 agaaagacca agtgtatgct gtaagtggca cagggtgctt ttaaaaggaa tcctgaccaa 2760 tggcctggtg tccgtgtacg agctggacta tggcaagcac gaattagtca acatgagaaa 2820 agtgcagccc ctggcggaca tgttccgcaa actgccgttc caagcagtcg agtgaagtgt 2880 aaccagtggt ctgaggaggc ttcgatggtg tttcgaaatc atgtggagaa gaaacctctg 2940 gtggcactgg tgcagacagt tatagaaaat actaaccctt gggaccggaa agtagcggtc 3000 tatttagtgg acacatcgtt gccagacaca gatatctgga ttcatgattt tatgtcagag 3060 tatctggtag agctttcaaa ggtcaattaa tcactgattc tgagaccttg acaactaatt 3120 cagatttttt agcaataaca aaaatgtagt aggcttttaa aaaaaaatta cctctgctac 3180 atggctttga ctg 3193 // ID KA520319; SV 1; linear; mRNA; TSA; MAM; 600 BP. XX AC KA520319; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27376 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-600 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-600 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; 985c2ade3c6448dd2d63fc74b8b8ef7f. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..600 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 600 BP; 156 A; 134 C; 155 G; 155 T; 0 other; ggccaaacca cccaagatgg tgaattctga aaatgtaatt ttggcatctc tgccagatcc 60 ctttttaaca tcatgtgcat ctcctgggat ccagcaaaaa tgttaagcca cactgccctt 120 gtgcctttta atataccaca gtgccagtta aactagtatt tctgttgctt ggggagttat 180 tttcatgagt gattcagcaa ggacaggcca aagaccagac gaacatagac taagctgcgg 240 agcactgagc agagaggctt ttgatgaaaa aagtcttgca tactgaactg taacgatgtg 300 gacagtacag ggtaaccaga gatggagcca gggcctcacc accatggagg agtgtctgct 360 gaggctgtag gagtggctct gcgctgcagg gacagccagc cccattcggc ttctccttga 420 aacacaattg cagctgtatt ctgcatcact ggaaactgca atataatatt aaatctgttg 480 gtctatggat ggctgtgcat gtgtttcttg ggacttgcgc ctgacgtgtt ggccagaggc 540 tgggaaacca ccacagcagt gctcagtaac ctgacgcagg atgtcttgtg ttctgaggtg 600 // ID KA520320; SV 1; linear; mRNA; TSA; MAM; 1186 BP. XX AC KA520320; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27377 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-1186 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-1186 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; 3bcf01f18318114143d9e6aa96684cb7. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..1186 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 1186 BP; 280 A; 298 C; 310 G; 298 T; 0 other; tgacaacccc acattgtcag atgatagcat tttttagcaa tacaaaattt taattaggtg 60 atatacattg tttcttctac agcataatgt aggcatacct tttacatata ctaagaaact 120 aaaaagttca tgtaactcat tttgatgtgg tttggaactg aatctgcatc tccgaggtac 180 acatgtaaat actgtaggct ttgcaggcca taatgtcttt cttgtaaatg cttagtccaa 240 tgaaacttta tttacagaaa gaggtgggcc acacgctgta gttggcagat cctggtccag 300 tgctctgagg aggggtggat ggtggattga cctaagaggc ccagttctga gaagcccact 360 tctagggcca cacagctttc atttttgcca tcaggacaga caggtttgct gataagaaaa 420 acgagtactg ccagccctgc tgcatggtgc agaaggggca gggcaggtca ccaggttcaa 480 gctcccttag gaactctggg atcccacaaa gcccgccttt ttctgtgctc tagcaccttc 540 tgagccagaa tgtctctggt aagaggtgag cacccaagtt cctcttccct tctcttgcgg 600 aggacaggtg ctaacatgtg accagctgac catgctggct ctggcagctc tggagttccc 660 catttctctg ttagtgcagc cctaacgttc tccaatacat ggcggcccca gacctagctg 720 tgtgaaggcc tgggggaaca gagggggccg ttcccatcaa catccagcct gggccccggg 780 cttgagggga gaggcgcctg ctgtgagagg cccccgccgt gagagctccc ttggtacacg 840 tggccgtcgg gctgtacact ctcattccgg ctgggcttgc agcctgtctg ttccctttgt 900 cttgacacgt gacacaacag gctgtgaatc ctcgttcttg gcaggcaggg caggtcagga 960 cgagctggcg gcactgggga gtggagcaga gtttatagtg gtcccagggg actgacacta 1020 tgtcattgtt gaaggataag gcgtaacgct catcgaaaac aaacaacttc cctttgtaaa 1080 aaccatcagg aaactcctcc aggtacttgt ggatgccacc cttgagctgg aacttggtct 1140 tcaggtaggc tgaaccccgc tcacaacgga tgcccccagt gcaata 1186 // ID KA520321; SV 1; linear; mRNA; TSA; MAM; 368 BP. XX AC KA520321; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27378 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-368 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-368 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; 44f056b2a9124e7c622b5aec4ca296f1. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..368 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 368 BP; 83 A; 96 C; 97 G; 92 T; 0 other; gaaagcatga cactgacata gagtctggtg gccagtctgc ttccaccaac agtcccattg 60 attccccctt gcccgtgagg tgcaggtgct gacacagagc tgtctgccag gcacagaccc 120 agtcggggtc cttcaggtca cagtagcagt aataaagtag cacctcccct cgtatcagct 180 catcagggtt aaagcagctt gtatcaggga gccaagtaga cacttctcgg ttacaggtaa 240 ggtcctcttt gaaagggttc cttttgtctg cagactcaag actcttggag gtactcgatg 300 tcacagccag gcaaatctca tcagcatgct gtgttgccac gtgtctgtgg atgctggttg 360 ggtctgta 368 // ID KA520322; SV 1; linear; mRNA; TSA; MAM; 1241 BP. XX AC KA520322; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27381 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-1241 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-1241 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; bb4479dea70fa0e68485d9e396842fba. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..1241 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 1241 BP; 379 A; 257 C; 220 G; 385 T; 0 other; gctttgttca tttatacaat ataggtgttt tttttttaaa ctttgtacat cataagttta 60 tggtgcataa tatatggggt ctctttggtt taccatatac ttagtggcta cagaatatag 120 ttctaggatt ttaaaacacc ataccattta agacaaataa tcacaagatt aaaggtgcat 180 ggcaagttac tggcagaact aaaagccaag cgcttagcta aatgttcttt tgtttatcct 240 gttcctcctt cccacaaact atgtaattag ttctcaagaa gctaaaggat aaccatttaa 300 ggctttggta acttggaccc tgaagctgct ttgtaatcct ttcataatgt attgcagagt 360 gtggctactt atacttttac ttgacccacc tcctttctct tagaccctct cttcgcgtgt 420 aatggttgct tctaacaact gcttactgat gtgaccctgc tctgatccag tctggcaaac 480 taggtgtatg gaaaaccaaa ccagagactg aattctgaag aaacaaacgc tcaacacttg 540 ctctccccaa aaatgaagct cacagagaca aaaggatggc acgtcacact gcacatcgca 600 ccttgcaata aatcaatatt aaactatact gatgccattt aacatgcttt tgtccaagta 660 aacataattt ttgttctcct tgactctaaa tctcgcagga attactcagc acttcaaatg 720 aagataaaga tttctataac ttactaatta tctacagtta tatctgaaaa tgaacgatga 780 ggacagaact tggcgacctg agtagagcat atctggctgt caatgatatc tggacatcag 840 gactgtctta aactgatgaa ggtaaagagc gacttacggg aagcccacct caaggagaca 900 agtcttagct atactggtct cgataatacg tgctcattaa taacttacgt gtcatttgct 960 atagatttgc catatttaat catcatgaca gtcattagat tattatgcct atatgacaga 1020 taaaaacagg cccactgagt aacttaccca aggtccacag ctagtaaatg gaatctgaaa 1080 ctatgtccat gtggtggttc aaggattcct tatctcccaa tgcagtggtc agcagcctga 1140 acccctagtt acttgctgga agctttttgt ttagtccaaa gaaggtcttg ctgcccattc 1200 agaattgatt tttactgagc tgtaatattc agcatagcac a 1241 // ID KA520323; SV 1; linear; mRNA; TSA; MAM; 2364 BP. XX AC KA520323; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27383 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-2364 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-2364 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; 1dee78d70cb0913b9855245088441ecb. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..2364 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 2364 BP; 634 A; 556 C; 570 G; 604 T; 0 other; ggaagaggcg gtgctctccg cgtggccccg gaagggcttt cagcgaaggc gggcgaagga 60 agcagccaag aggcggaggt aacccgagag ggtcgctgcg tgcggggcag aagccaccgg 120 cctggtgagc tttcaaagcc ggctctcctg gatccgagct cgcggagcca tccagccatc 180 ctgccttgtg cttccgggag ccgccgcgac cgagagcgcc tgcgcgccgg ccactccgcg 240 cgcctcgccg ctgtactcct actggccggc ggcctgacgg tccctgccgc gcttcgtgac 300 cggtgtctca gctccgcgga gcaccagcgt gtggcatgtc gcggcggcgg cggggacaac 360 ctcacaaaag gagaaagacc tctgatgcaa atgaaactga agatcacttg gaatctttaa 420 taagtgcctg ctctttggag agcaacctag aaggcttggc tggtgttttg gaagctgatc 480 ttcctaacta caagagcaag atctttgcac gtctgttacc tgagaagttg accatttata 540 caacattagt tggactactg aatgccagga attacaactt tggtggagaa tttgtagaag 600 ccatgattcg ccaactgaaa gaatcattga aatcaaacaa ttatatttgg tccgttttct 660 atctgatctt gtgaactgtc atgtcattgc tgccccatca atggttgcta tgtttgaaaa 720 ttttgtaagt gtaactcagg tgcggcggga ttggtacgtg tatgcgtttc tgtcgtcctt 780 gccctgggtt ggaaaggaat tgtatgaaaa gaaagatgca gagatggacc gaatctttgc 840 cagaaagacg ccaaaagact catgtaccca tgttacaagt atggactgca gagaaatatt 900 tagattgcct ctgggcccag attcagaaat tgaaaaagga tcgctggcag gagcggcaca 960 tcctaagacc ttatcttgcc tttgacagca tcctgtgtga agccctgcag cacaacctgc 1020 ctccgttcac accgccgcct cacactgaag actcggtgta cccgatgccg agggtcatct 1080 tcagaatgtt tgatggtcct gtaatgccag ggagtcattc agtggaaaga tttgtaatag 1140 aagagaatct tcactgcatc attaagtccc attgtgctgc acagctggtg agttatcctg 1200 ggaagaacaa gatccccttg gttgaggtga tctttgcaga gctgtttcaa cttccggcac 1260 cacctcatat cgatgtgatg tacacgacac ttctcattga actgtgcaaa cttcagcctc 1320 ttgcacaggc aactgaaatg ttatatatgc gtttggacac gatgaagttt attaattggt 1380 tttcccatca tctaagtaac ttccaattcc ggtcagattg tcttactcaa gatccagaaa 1440 gtcccaaacc aaagtttgta agagaagtag gttgtcttac catcagcgta tattagattt 1500 tgtccctcct accttctcag ctctatgtcc tgcaaaccca acctgcattt acaagtactc 1560 tcttcctgga cattcagttg ccctctgttt agctgttgcc tttaaaagta aagcaaccaa 1620 tgatgaaatc ttcagcattc tgaaagacgt ccctaatcct atgatgaagg attcagcttt 1680 aacccactga aaatagaagt ctttgtacag actctgctac acttagcagc caagtcattc 1740 agccactccg ccaaccatga aaaggtttca tgaagtcttc aaaaccctag ctgaaagtga 1800 tgaaggaaaa ttacatgttc taagagtcat gtttgaggtc atgattgctg ttctagtgga 1860 taagatgatt cgtacacaga ttgttgactg tgctgcagta gcaaactgga tcttctcttc 1920 agaattctag attgtttgtt tgggaaatct tgcactccac aattcgcaag atgaacaaac 1980 acgttctgaa gatccagaaa gagctagaag aggctaaaga aaaactccga agtgatgatg 2040 atgacagaag cagtgacagg aaagatgggg ctcttgaaga acaaatagaa agactgcagg 2100 aaaaagtgga atctgctcag agtgaacaaa agaatctctt tcagcgtttt atcatgatcc 2160 tgactgagca cttagtacgc tgtgaaactg acgggaccag tgtgttaaca ccatggtata 2220 agaactgtat agagaggctc ttcctacagc atcaccaaat aatccagcag tacatggtga 2280 ccctggagaa cctgctcttc actgctgagt tagaccctca catcctggct gtgttccagc 2340 agttctgtgc cctgcaggcc taag 2364 // ID KA520324; SV 1; linear; mRNA; TSA; MAM; 652 BP. XX AC KA520324; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27384 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-652 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-652 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; 7163bc539081e5a56900f05fe9668cff. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..652 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 652 BP; 137 A; 185 C; 98 G; 232 T; 0 other; ctaaatttcc acactgtaga acagatcact taacatcaca ttttctcata tgtcagttca 60 tggccacaca cagtacaagt cttccggtac atgtcatcct ctaggttttc ttcagcccca 120 tactcatgtt gatgagcagc tgtttccttt ttccatacac tgcttccttt tactttttta 180 tcaaacttct tctgtttcat tttttctcga tttttctgtc gaacttcttt cgcttcttct 240 aatgcttcct gactacccca aacttcactg taatcttaag tagagtttca tatcaccccc 300 ttcacaataa atttaagcgc tggttctctt ttttctaaat cacaatcttt cagaaggtat 360 tcttgttttg cttctgtttt agttataagc ttgtctgcaa ttatcacaag ccatgaactc 420 tttaccacat tcttcacata taacataatc cctggttgat gaacaacttt tccaactgta 480 tgttcttcct cctcctcctc ttccaggatg aagcctcctc ctgtgtcaat tatctttggg 540 gctgcctcca gtagttgcag cccgccagcc gggcctggcg cagcatcagc gcccgctgcc 600 gcttccgctc gatgctcgcc cgcactgagg cagacagctc cgttggttgt tc 652 // ID KA520325; SV 1; linear; mRNA; TSA; MAM; 955 BP. XX AC KA520325; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27385 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-955 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-955 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; 81b2cf18a0a9ecf8dbe909f4d36eec5c. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..955 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 955 BP; 195 A; 265 C; 238 G; 257 T; 0 other; ttgtactggt aacccaacag ccacacccaa gtcaatcagg ctgtcttaca ggctccatgg 60 aggatcctca cgaacccaaa gacaccgggg actctgcagg cttgctcatc tgaacaggct 120 cagaagccgg cttgatcctt aggacttccg caaaaccatc accaaaccag catgtgacat 180 gtgccgtgtc tactgtaaag taaaagagac gatcttggca gagcttccgt cgatatacag 240 accgaggatc agctgacagc acagcctcga tggcatgcct tgcttcctcc gctgactgaa 300 aatatttaaa ctggttcacc tgagctgagg tgctcaaggt ccatctctgc gtgaggagta 360 aaccggactg ccaaggtggc cacaggggcc tctctcaccc aggcagggac caggctgcag 420 tgggctgtac cggccaccct ggaaggagcc ttgggggaca tctctgggcc gtgtccttct 480 ggagccactg cttcttcccc tctcttcagc ctgctgtctt cttgttcctc tgaagggctc 540 ttctcctgga tacgtgggcc actttgctct tgtgccaccc tgggactgga ttcttcaccc 600 aactctgctg ctctctccct cggctcaggt gagctttgct gggtgtttgc tgcgtcatca 660 gatcccacat tgttttcccc tgaagttcta tcttcaggac atttgggttt ctccgtagtg 720 cggcggcagg gctgtgattc cttgtactct gagagctgtt gccagtcaca gctatcagtc 780 ttgccttcag actgggacac ggtttttggt ttatgttggt tattctgtaa ggtgaagtcc 840 cctgaagact caatcaaagt tttcggtgag tcataatcag ctatgtaggg ctttatgtct 900 agtacaggtg tgccatgaat catgtcaatt ccagaaagct tctacccttt ccagt 955 // ID KA520326; SV 1; linear; mRNA; TSA; MAM; 491 BP. XX AC KA520326; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27386 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-491 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-491 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; 9642a0c4bc343358a52f2e434c6365f3. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..491 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 491 BP; 159 A; 97 C; 105 G; 130 T; 0 other; atgaagaaga ggaagaaagc gggaaaggtg aaaagaggaa gagagaaaca gatgatgaag 60 gagaagatga ttaataagac cccaataacc tgcaaaaaaa agaactgttc agtattggtt 120 ggactgctga catggatttg gtagcgaaaa aagccagctg tgatacaaac cccaggacac 180 ccacccaccc aaagagccaa agaatagttc ctgtgacatt ccaccttcct ccatttagtc 240 cctcttggaa atccaccacc aagcttgggg acttcacccc aacaaaattg taagcgtttg 300 ttaggttttt gtgtaagact tgctgtagcg tggatagctg tgattggtga gtcaactgtc 360 cgtggctacc agttgcacca agattgtaac agcatttcta ctttctgtac aacaaagaag 420 ctttgtaaat aaaatcttaa cattttgggt ctgttttttc atgcttttct tttcaaagac 480 acttttttac a 491 // ID KA520327; SV 1; linear; mRNA; TSA; MAM; 1000 BP. XX AC KA520327; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27387 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-1000 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-1000 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; 4d9bc8abd43e59b4536c2fc07f9ebce6. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..1000 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 1000 BP; 272 A; 243 C; 226 G; 259 T; 0 other; aaaaatttct acaaattcaa gtctgcaaag acagtaagtg atgggttacc atttcagacc 60 tggaccccaa caaagctcag tcctgtgttg aatgctgccg gaggcgcctg ctcctgtcag 120 atggcagcta ggactatcgg ctgtcttagc actgccatgc ccaacaggaa cccactggca 180 tgccaacagg tcctggcatg gcacagcact gtagttttca ggacagttca catcctctgg 240 gctcatttga gcctcacacc actgctaggt agggtcatta atcccacttt acagatgatc 300 tcccatcaag tacagcgact agcctgagat aatgactgtg gacaaaagct gcagtttttg 360 ccctttatag ttcagctctg actcttgcta caatacatga acccaaaacc tcaaatctcc 420 ctctgggtgt aagacttcct ctcagagccc atggaaggta atccaaagat agattcaatc 480 ccacagagta accaggcaaa agcaggacat cacaggcctc ataagagagg ggccagagca 540 agtaggcacc ggctcgagac tgggtgaaag agcacagacc ccagccccac cactagctgt 600 gagatattgg gcatgttatt cattctctaa gttttgccat gtgtacaact gtcaaactgt 660 ctttctccta ggggtgatgt aaggatcgaa tgagttaata gttgtaaagc attagaacag 720 tgcctggcaa aatagcaagg atttctactt ggaccctgtg gctgtgagtc tgggaataag 780 tcttacagag atgaacagag atgtggggtc aagtgtaccc atctccctct gtcaggaatg 840 ccctctgcct gtcagaattc agcttggggc catccccagt agaattaatt tcccttttcc 900 tggagtgtag tgtttaaaac atctagccaa gctagagttt taaatgattt ggttaggact 960 aaagccactt ttgaagttcc ttctgccttg tattctactt 1000 // ID KA520328; SV 1; linear; mRNA; TSA; MAM; 2010 BP. XX AC KA520328; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27388 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-2010 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-2010 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; a6404cce1e42240e462127bf39181a8f. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..2010 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 2010 BP; 487 A; 477 C; 607 G; 439 T; 0 other; agagtctgtt taaaccacgg agattcagcc ttgcatgttc ctcatcctac cactgccctc 60 ctgtcaagca cctaagaaga taacttaaga cagtataact tcaaaaccac ataaggaatt 120 cgacaaacag gatgctgaaa gttcagaacc gaggcacaga ccctagaaag aggcctttcc 180 ctccctcctg gaggagctga cttcctgctg atttaacctt ctctattgac aacatcacta 240 ctttctggaa agcagggggt ctctgcattt ccttggcaac attttggacc tgaggaaaac 300 agggatgcct gagctgccca aaccccactc atggtgagtt cctctccttt tgattccaag 360 acagctggga aaactgcctg tggttgctta gcaacagtca tctgctgatt tcttcccaac 420 accccctaag aaatgaataa gcagtaaaat cttccaggct gaaagctggg ctggaagggc 480 tgggccagag acacatggct gggtgctggg gggtggccca gtccttaatc tctgtgggtg 540 acttgaggca actttctttc acgaccttat tctccccaaa tgtacaatga ggtcaggctg 600 ggtgatctgt gaggccctcc caactcagct gttctgattc actagcagtc agctagtggt 660 catcgactca ctgccttgga gggaagggac tttttgaatt tttcagggtg aggaaggcgt 720 aggacatggc tgcccttaga aatcttccaa tctaattgga aagacaggtt ggggagactt 780 cctggggcag ttaagcctcg ggaagacagg caaaaagaag aaagggcttt cctgtataaa 840 tgtgtttgta tgggaaggca aaggcacggg tatacaggtg gaactatgtg acccagttct 900 gattgaaagg tctctgaaaa gagcagtagg agctagatga gggtatgtac tttggggcag 960 actagaaaag ccttgaatgc tagggttagg tgattcccct gcccctctcc ccattgtagt 1020 ccttgggaag cttttgatag ttctaagaaa ttaagtgagg ttacaagcag atcactctgg 1080 ctgtaaggta gaaaatgagc ttgggaaact gttcaggcca ggaggcagta agaacctctt 1140 gcagctgctc gtaagggagg tgacatggac aagctgaagt agagtgaaga ggaggaagca 1200 tatccaaggg acattaaggg atagaagagt cctagcgact ctcactcatt cacatattta 1260 tcttgcgcct actatgtgcc aggcagttct gggtgctatg tgagctgatg ctggggatca 1320 tgttcactga catggtcagg gtgcttaagg ctcacctgtg ggtgtgtgct ttcaggaacc 1380 tgaactaaaa ggcagtgtag tatgagtgtc ctggtggcgg tggcggggtc gcacgagaga 1440 gcagcaggag aggacctgca ggtttagggc tcgtttgaag ctcgcctact aggagaggaa 1500 ctgtacaaag cacagggaag gactggtggg ggagacgatg ggaatgctta cagaggaggt 1560 catagaccag ctccgtctgg atgcggtaga gtagagccgt ggagagccta aggcggtcac 1620 tagggtctcg gccactaggg cagccgggag atgctgatgg ccccttccca gagccgcagg 1680 gccgggtaca gcggctcctg gaaggcggcc cggaaggtgt gtaggtggct catgccgccc 1740 gtcacatcgt agaaggccag gacgccagcc tcgtaatcca ggaagacacc gagccggtca 1800 gggtcgtggc ggggccgcag gcggctgcgc tggcagtcgt ggaaggccca gtactcgagg 1860 tcatagcgtt tgaggcacca ggactggcgg ttgcagccca ggcgggcggc gtccgaggcc 1920 ccgtggcgtc gcagggagcc gtaggccgcg cccacccacc agccgacgcc cgcctcctgc 1980 acatccactt cccaggagtg gcggccggcg 2010 // ID KA520329; SV 1; linear; mRNA; TSA; MAM; 682 BP. XX AC KA520329; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27389 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-682 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-682 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; a348126e993eee55dea0033b202bfd00. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..682 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 682 BP; 139 A; 188 C; 188 G; 167 T; 0 other; aagaagagtg atcgctctgg tgaggggctt gttttcaaca aggaacccgg ctggacacag 60 gagcccgagt ttccttaagg cggacatcca gtggcgtctg cagcagtctc tgcatggctt 120 tcacgaggtc cttaaagaag ctcttgacgg gctcgaatga gtggggcacg gggtggcaca 180 gctcccccag gctcatctgc tgctgtatct gctgctcaga aacccagcat tacctgcagc 240 agctgtacag gattggtttc ttggctgata gtccagaccc tgttggacag agtgttcatg 300 acatcaattt gttccccaca agacttgatt tgctctgtgt atgcctgcag ggcaagctgt 360 gtgtttttat caatgaattt cttggccaga gcttcctctt cttcaagtag taatttgagt 420 tcagtaaatt tcccggtcag ccaggtttta ccttgagctt ctcagcagca tcttctatct 480 gggttatgtt gccaacttgc tgctgcttct tggttgccaa atgctttaag cctgcacgcg 540 cgccgcctcg tccagcgcca aaccgatcgg gtggccgcga tgcgagccca gcaccgggca 600 aagcgcgcac acgcagcggc ggcagcggcg acagaagagc tcaaccacgc ggtcgccgtg 660 ctctgaacag ggccaaccgc gc 682 // ID KA520330; SV 1; linear; mRNA; TSA; MAM; 1123 BP. XX AC KA520330; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27390 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-1123 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-1123 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; 26733432a69a61d1ddaf664b6c00e50b. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..1123 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 1123 BP; 266 A; 280 C; 346 G; 231 T; 0 other; ggccggtgtg tgggtcccgc tgggctgcgg acctaacgct ccaaggaggt ggcgggaccc 60 tgactggtgg tgcagcaggg aagcgtaagc caccaccatg ccgctggagc tggagctgtg 120 tcctgggcgc tgggtgggcg ggcagcatcc atgttttatc attgccgaga tcggccagaa 180 ccaccagggc gatctggacg tggccaagcg catgagagtg tggggccgat tgtgccaagt 240 tccagaagag tgagctggag tataagttta atcggaaagc cttggagagg ccatacacct 300 cgaagcattc ctgggggaag acatacgggg agcacaaacg ccatctggag ttcagccatg 360 cccagtacaa ggagctgcag aaatatgccg aggaggttgg catcttcttc actgccttga 420 gatggcagtt gagtttctgc atgaactgaa tgttcccttt ttcaaagttg gatctgggga 480 caccaacaat ttcccgtatc tggaaaaagg ccgcccaatg gtgatctcta gtgggatgca 540 gtccatggac accatgaagc aagtctatca gattgtgaag cccctcaacc ccaacttctg 600 cttcctccag tgcaccagtg cctacccgct ccagcctgag gacgtcaacc tcggaatacc 660 agaagctctt tcctgacatc cccgtagggt attctgggca tgaaactggc atagcgatat 720 ccgtggctgc agtggctctg ggggccaagg tcttggagcg tcacataact ttggacaaga 780 cctggaaagg gagtgaccac tcggcctcgc tggagcctgg agagctggcc gagctggtgc 840 ggtccgtgcg cctcgtggag agggcgctgg gctccccgac caagcagctg ctgccctgtg 900 agatggctgg gcaagtctgt ggtggccaaa gtgagaattc cagaaggcag cattctgaca 960 ctggacatgc tcactgtgaa ggtgagtgag cccaaaggtt accctcctga agacatcttt 1020 agcctggtgg gcaagaaggt cctggtcact gtggaagaag acgacaccat catggaagaa 1080 ttggtagaga atcatgggaa aaaaatcaga tcttaaaata aag 1123 // ID KA520331; SV 1; linear; mRNA; TSA; MAM; 729 BP. XX AC KA520331; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27391 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-729 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-729 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; 852f4b0f99446d58304a8804c1fa5685. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..729 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 729 BP; 96 A; 260 C; 203 G; 170 T; 0 other; ccgcagtggc cgctccacgg cctcgtgggc cagcaggtgg tgggagtgca cttccagtgc 60 ctggatcttg gccagcagcc tcaggtcctc cacctcgtag ttgggcaccg tcaggaagcc 120 gctgatggtg ctggggctga gcacgacgct gtcggctgag gcctccctgg cttcccactg 180 cagtgcctcc tggatgagct gcctcaggag ctccgagcac tcgccggcct ccacccccaa 240 ggcctcctgc agcctccgca gccctgccag gcacttgctc tccacccgac agttctgggc 300 cttcatcagg agggccttct ccttctcagc caccttcctc cagatctttg tgacctggtg 360 gatctcagag ttgagaaagc ggttctgagt ccggtacttt aggtgctcca tcttctcctg 420 ttggctcagg aagtccttgg aagtcctggg tgaccttctc agagagcttg cagatgacct 480 gctgcttggc ctgattcttg tccaggagca gctgcacgtg ctgctgcagt tcccctatct 540 cctgctcctg caggcttgct gtctgcgcca ggctctcccg ctcccgctcc agggcctcca 600 cccgccggct cagctccgca atctgccgca ctttgtgacg caccagctcc agccggtcct 660 tgtcctgggc cgctgccagg tatgcgatgg acaccctctt ctcctgctgg gctgcctcta 720 gcgccttgt 729 // ID KA520332; SV 1; linear; mRNA; TSA; MAM; 2193 BP. XX AC KA520332; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27392 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-2193 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-2193 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; d6bffa99f39fa6ee60a7c642150df174. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..2193 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 2193 BP; 499 A; 584 C; 554 G; 556 T; 0 other; aaactggaca gaacatcaga atatcagaag cactcaacaa gaggccagag aagcccaaag 60 aacaattcag agaagcagat tgctcaccag ggtggcaagc agtgcttttc caccaagatg 120 ttcaaggacc aggcagctaa acggcacttg tgacatctca gtggacatgg agctgttcct 180 ccattaccat ttttcatcat tttggtcttg tcctttctgc aaagaagaga gcaacacaga 240 gagagaaatg acacttacct tctgcggaac cggtacctct ggacttcgtg ggcactttca 300 gtaaccgatg gtcctatgga gtcgcctttg gggccacagc caataaggtc atgttcttgt 360 tctcggaagg ttaccagccc ctgctggtcc tggcccttct ctccaagcct ttgtgcttct 420 gatcggaggc atcgaagttg gcctgtccca cttccccttt ttcgcctgcc tctcttcgga 480 gttcgggctg gtcagctccg tcctgggctt cacctgtttc tgtcctgcag gtttgtggtc 540 accacccttt acatcatacg gtctgcttct gtggcagttt gtggggaatt acgagactgt 600 tatgttctac tggccctcgc tgctctgcct agccttcctg ctgggccgct tcctgcacat 660 atttgtcaaa tctctgaggg tccacctggg aagaaaaacc tttcctggaa gttcaccagg 720 cagagcacgt caagcagctc ctgcaagaaa gaaataagtc ttggttccaa gccaggatat 780 atgagtggga ccccaacttt cagttcccaa gcaggatgat tggaaccatt gtgttggctt 840 tttcattgtc attgagttct gcgtgttcgt gtatgtgaga gatgagctgg atgtgtttga 900 aggtgaattg gagagctaca tcacctccat gaaccagaca gggagcccag tcctcctgca 960 ggtgaaagag ctgtaaagaa gtctgggtgg tgaccatttt gcctgcctcc ctcacatgtg 1020 tgagctacct gttccataca gaaagcacat caagaggttg tgggcagggg ataaacactt 1080 tcttcctctg aagtttcata atccttggtg gccattgcaa ggtactctgg ctggcagatg 1140 gcccccgggc tacctcatca tccatgtgat gcagagcctg tgtggcctgg cgatcatgta 1200 cagcctggtg cttcctgtca tccaccatca ggcgctggag atgctccgac cctcaccgta 1260 tccatcgtcc tgggtctcat ggtcctgcag gtatggatcg ccaccagctt cttcctgcaa 1320 ccaaagatgg ggacagatga caagcagaag ccccaacagg agagcgttcc acaacttcaa 1380 ctactttctg ttcttctaca acgtgctgct gggcctgggt gcctgcctct ccaggctttt 1440 catcagctgt gtcctgggca cgtggctgat cgcccgcatc gacaggacca tcctgcagag 1500 tggctatggg gttcagtgca tggattggca tgctctacgt agatcattat cacaccaacc 1560 ccgtgctcgt cagcttttgc catatcctga tcaccggcca cagggagagg aggctacagc 1620 agaccatcaa atactggtag gctctgattc tgttccaggt ccccgtctct cagcgaggtc 1680 caggacaagg tggctcctgc tgcagaccct gatcaacaac cccgaactgg tcagactcag 1740 aaaatccagg ccaggtcttg gctcccagga gtttacccag attctgttga cgtgctcgga 1800 gagctgacac tgaccttcca cattgctgca aggttgttcc aggacaactt cccccgagaa 1860 ggcccaggct actcagcagc tgtcccctgc agtggaatag gctgcacggc cactgtccat 1920 tgcagactgg ccattcgtgg ggtggcactt ggggctgaac agtgatgtct caggtctaat 1980 tcactccctt gggaaaaaga gcaacaacaa aagagaattt ctgttgaaca aactttaccc 2040 aataatgatg tccactatcc ctggttagaa ggcagccttg gggagttcta tgttgagacg 2100 cactgggcag aacttcatgt cactgacaaa ggtggtataa aagtttgtat caggagagtt 2160 taactgtttg atgcatttct tctcagggac aaa 2193 // ID KA520333; SV 1; linear; mRNA; TSA; MAM; 586 BP. XX AC KA520333; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27393 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-586 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-586 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; 1d699d3c4ea5e1e157c9b5ef2fbeecde. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..586 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 586 BP; 111 A; 197 C; 111 G; 167 T; 0 other; gaaacaagtg ccttcagtct tccctgggat ccctgagatg tcccatgttc ctccttctct 60 gaccctcttc ctccactttc tgtgccctgg gagcccttct acccaggagg ttagaagtct 120 tcaccccagt cagtctggct gtgggactcc gaggccttgt tcctgctaat tcagcttctt 180 cattgtttct ggaaatcaac tctgctacct aagtccttca atcagccatt tgtctgagac 240 tcctccataa ctcacgatgc aacagaggcc ctccaagatg gtgtgcagtt ttgcttaaac 300 taccccattc cttaccacaa gctctctctt ggctgccacc tgtatcattc tgctctgcct 360 tccccctggg aagccctcca gttagccatg ttctgcctgt ggacactcag cactgatctg 420 gactgttttc attgctgagc ccaacattgc agatatccag atctgtggaa caaactctta 480 tccctccagc caccctcatg tccccaggaa tcctggtccg gctccttcct ccacacctca 540 ctccttctag gcagctttcc ctgtggcctc tgagcaggac agagac 586 // ID KA520334; SV 1; linear; mRNA; TSA; MAM; 578 BP. XX AC KA520334; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27394 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-578 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-578 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; acec722d97e446a11bdb35d9f46075b2. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..578 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 578 BP; 161 A; 147 C; 113 G; 157 T; 0 other; ctcaagagta ttgggatccc cacatcattt tctagctgtg tgacattgac taaattacct 60 caccattctg tgctttcttt atgtataaaa agggagtaat acccataaca ccaaaaatta 120 ctttgaggat aaaatgagtt tatatataca aacactccta agctagtgcc tgacacatcc 180 taaactcaaa aaaaatatca gtcattgttg ttggaaagag gcctcaggtt tcattcacca 240 ttaccaagta cctactgtaa cactgtagga tcttgactta agtagtgagg ccatgatgaa 300 tgaatcttac agccatgaat tcgatctcag gagcaggggg ttttggtccc agctctgcct 360 ctagcatgag tctcattttt cccaaatgag agttcatgct gccctcacag ccagtgctcc 420 tgatgtgcac ccagctggtg ctgaccaagt acttgctatg tgcagtcacc actccaggga 480 cccagcacac ctaagaaggc aaagtcttgc cagcatgtgg cccaggcctc tcctgcagct 540 cttgctacaa ctgtctccca gcctctacca tggaatgg 578 // ID KA520335; SV 1; linear; mRNA; TSA; MAM; 1534 BP. XX AC KA520335; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27395 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-1534 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-1534 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; 38eedff1c9a4e20fe3779637f519eb1d. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..1534 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 1534 BP; 355 A; 457 C; 376 G; 346 T; 0 other; ctaaaaacac acacaccttt gaaaatgtcg taggtttcag tcattcaggt gaaacattta 60 acaggcaccc cagggacccc tccgtcctcg ttccgtccag gtcctacctg ttctcagaga 120 tgggtgtaaa tagcgcctgc tccgggaagg tgtccttgat gccagccccc ttgcccctta 180 tgtcgagtca acgggtctcc cgagacgcag aggacagagc agagagtatc ctgcccagag 240 ggtctctgat ttccactccg ctaccactct ccaccagtga gtgccacaac tgttcacctt 300 attcttttca tagaggaata ttcctttttt ggaggttgat ctgattcccc taggaggaag 360 acagccagtg ttcttcagca agagtcctct agcccaacac tagcaccccc aaccaccctc 420 cctcatgttg cactaccaca ggggacctca ggggggcagt gcacaaccac aaaacaggac 480 gtggacctgg gcggggcctc gatgctggac atgggtggca gacaagggag ctgaaactca 540 ggcagaaagg gacttgaagg aacctagatc tctttcttgg agaaggaaat ggcaacccac 600 tccagtgttc ttgcctggag aatcccagca cagagtccga cacgactgaa gcgacttagc 660 agcagcagca gcagatctct ttctcctccg tggtaccatc tgagagggag gctgactcca 720 gcttcagacc aaaacctcct gcagctttgc agtccagcag ctctgctgct ttgccagcca 780 ggaaacagga ctgggtgtct tatgtccctg gtcctgccct ttagacccaa ggctcggcag 840 tctgttcatt tgttcacctg ggccgtgaga gtccccagca gtgcccgttc gtggtgcagg 900 cagggtgccc tcccctggag tatggaatga agacgggaga agagcggagg cctgacttct 960 tgaggataga ctggctggtt gagtgaagaa atgaacctcc acccaccccg acagcctgga 1020 ggaagctaag tgccagcagg atggaccagc atgaaagcca gagagctgtt gattctgcca 1080 gctcggcatc ccctcctgga atggccagct gccacctttc tatcccctta ccggggcctc 1140 ctaccctcaa actgtcccct tcctgcccac agaccaaaca cacccctctt gctgtttatc 1200 tagacaagac tggaattttt cagactttaa gtgagaaact aactgcgccc catctggtgc 1260 ccctttccct ctggccccac cccctcctct ctttctagac ctctagcctc cactcagccc 1320 tgatgagcag ctcctggctg aaatttgtga ataatgggag cagtatgaga gcaaatccct 1380 tctattggag aactcaaatg atccaaactg tccagatacc agcgggttcc tctgagctca 1440 gaaggctctg tgggcctcag aggaagccct tgtgtcaggt ttgttgctat caatgacgca 1500 tttgagaacc tccgatttgg ctcaatccag actc 1534 // ID KA520336; SV 1; linear; mRNA; TSA; MAM; 489 BP. XX AC KA520336; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27396 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-489 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-489 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; b0b6eba0559b543fbd02b9f04ad4b8b0. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..489 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 489 BP; 123 A; 118 C; 161 G; 87 T; 0 other; tggaggtgct ttgcccagaa gaaaggacgt catgcagtca atctcgaatt tgcacctggc 60 gcgtggctgg gagaccagcc ttcgtgagtt ccagtgggtg tccagctcga ggccaagatg 120 tcttccgtgg ggaaggtgac ccagattccc agcgggaagg tctaccagca gtgcagctgg 180 tccgctccct gacatcctct aggaagcgag ctgtggagcg ttccatgatc ccaaaggatg 240 gcaggaagcc cttggtgaag aaggtggatg tccgtgaagg cgagatgatg tctcctcggc 300 agcggaagtg gatgcgcagc ctacccaatg accggaccac agaaagggaa aaggaaatag 360 ccaaaaagga aaaagctcaa gagagtgaga acaccatcga cgccagagaa gtccggggcc 420 tcacggacat cattggtgag cctgtgttca gctgtgagag cagagagtgc tccatgggga 480 gctcctggg 489 // ID KA520337; SV 1; linear; mRNA; TSA; MAM; 399 BP. XX AC KA520337; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27399 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-399 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-399 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; b20f64cdb6c6eb076c88f6b506c958a0. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..399 FT /organism="Bubalus bubalis" FT /mol_type="mRNA" FT /tissue_type="liver" FT /note="breed: Murrah" FT /db_xref="taxon:89462" XX SQ Sequence 399 BP; 195 A; 67 C; 56 G; 81 T; 0 other; ctgaagcgac ttagcaacat cttaacaata catagcaaga caaatgaaca aaaacacaaa 60 aaaaacccaa accaaccttc ataataaaaa ggaagaaatt ataaactgtg aatatttgca 120 actcatatta aaaaggggct cacatgccaa aaatgcaaac agctcctaga aactgataag 180 aaaaagaaca gacacacagt agaaaaactg gcaaaagaca taaacccaga gttcacacaa 240 aaagaaatgg aaatagcctt aaatatatga aaatatgaat agaaatagaa tagaaatgcc 300 tacatatgtt caccatgcaa aagaatgttc agaacagcat tatttggtaa ttctctaaac 360 tggaatgtac atcaataata aaaaggataa atattatgc 399 // ID KA520338; SV 1; linear; mRNA; TSA; MAM; 350 BP. XX AC KA520338; XX PR Project:PRJNA62505; XX DT 31-OCT-2012 (Rel. 114, Created) DT 31-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE TSA: Bubalus bubalis CuffLv8_GeneID_27400 mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Bubalus bubalis (water buffalo) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bubalus. XX RN [1] RP 1-350 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT "Transcriptome of Bubalus bubalis"; RL Unpublished. XX RN [2] RP 1-350 RA Upasna S., Banerjee P., Joshi J., Shivali B., Vijh R.K.; RT ; RL Submitted (05-JUN-2012) to the INSDC. RL Animal Genetics, National Bureau of Animal Genetic Resources, Karnal, RL Haryana 132001, India XX DR MD5; 8c25fb24c9cded309d5c6919c89b1cbf. DR ENA; SRR527269. XX CC Assembly pipeline began with alignment to cattle genome (btau4.0) CC using open source software Tophat version 1.3.2 followed by CC Cufflinks version 1.0.3 for identification of genes, transcripts CC and exons. We utilized our own script to extract and assemble the CC exons to their respective genes as identified by the software CC Cufflinks. CC ##Assembly-Data-START## CC Assembly Method :: Tophat v. 1.3.2; Cufflinks v. 1.0.3 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX XX FH Key