ID JV172641; SV 1; linear; mRNA; TSA; VRT; 1745 BP. XX AC JV172641; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15459.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-1745 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-1745 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; 3838638fc82c9fdededaeae6050a5414. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..1745 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 1745 BP; 430 A; 441 C; 373 G; 501 T; 0 other; ctaggacctg acatggaaag agatgccaca gcagggtctg ggtgttcccc ccaaaaatta 60 attactaaaa atcttctctg tgccttccca cccagcctca agcagttcac aaatgatgtt 120 tgcacatgct ttcttctctg cccacaggat ttctcctgct cagcatccct gagggctccc 180 tgtaaccagc acagggccac aacttttggc accatctcca aaatgatgcc cagcaccaca 240 agtgccttaa ctgcaggagg ttttttcctt ttcctttata atgccccagc tctgcatctg 300 tccagcactg ctgccctgat gggctccttg ggcaggccat gagatccctg cttccctctg 360 ttcctgcccc tgctctggat ttctgtttaa atgtgattaa tggtgcattt atcccattgc 420 cctggtgatc aaacactcct gtggcaggtg ggggaggaag gaaagaatcc cctgggcagg 480 gctgggaatg acccctgggt ctgtgccctg aagggtgaaa ggctggcagg ctgtcaccgc 540 tcccctcccc gcttcagaca cgctgtagct gacttttctc gatccaaacc tgggctaact 600 caccaataaa ggggctcaaa gctgaataca caacagtgca aatggacaca ggaagcctgt 660 taagatttac tcctcaaaca ctgaaaataa tatggaaaca gagagatggc acagaaacag 720 ttcttgattg tgtagagtct gaaaaaccac atgaggaaat agagtttaga tggtcagttt 780 ctatttttac agacaaaaat caatcccaaa cttccaaagg tattttgtgt ctggtttatt 840 attttctttc cataacagtc aatgtggtcc aagaactctg aatgttatca tgcaaagagg 900 aaggacaggc acaatttccc cactcaaacc actttattga cacacttgca agacaaaaat 960 aaactgctcc ctgcttccta cacccctcat gccagcttct gtctgcaact tttctttttt 1020 ttttttttta cttttctaac tcattacaag aaagtcattt tattttcaca ttttgctggc 1080 agctggaagt ctccaaatga gggaagcagg gctgagatgc atctatctca tccctcagca 1140 aaaatccctg caacatacgg tgctgttacg actctgagct ttaggtggag agggaaacag 1200 gcatctgggc tgggttcatt tgtaacgctg cacttgctgg attaatatgg aaagacagat 1260 gaaggcagac actttaatta cttcacccta actttttatt acaacatcaa gtaaaatggt 1320 gagttacaga ggataatggg cgtgaaacat ctgggatgaa gtcgcacaca agctcatggg 1380 ttgttatctg ccaatggggt tttaaatatt gataatttct gtacatgcat ctttgtgtta 1440 tttctgatct tgataaatca tctcaggatt actttgtttt gagctgtgag gtagctacta 1500 ggactgggag ccagcttttt tcttctggaa ttttctgaac tgggactgta tcgccacggc 1560 cgcccgctct gtctctggcg cgtccatgtc tatgtcaaac tcctcttgga ccttcttttg 1620 cccatcattc tcaccagacg tcttgtcttt cccatttgta gccccggttc cttgtctctc 1680 gctcatgtcg cgacagtgtc ccggtgtgac agtggcagcg gccccgccgg cgctcagcgc 1740 tcccc 1745 // ID JV172642; SV 1; linear; mRNA; TSA; VRT; 714 BP. XX AC JV172642; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15460.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-714 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-714 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; 30e91cfcba7f94fea7b92bfbf336651d. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..714 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 714 BP; 152 A; 210 C; 160 G; 192 T; 0 other; catggcctct actgtgggcc gaggactacg agggagagtc tttatagctt tgcggcaatc 60 agcatttgca ttgctatatg ccattctctg tagcatcatt tccctatcgt catccctgag 120 tgcctgtgct tccacatatc tgtagaggcg ctccataaat tccatgtatg gttcatgctc 180 tccttgcaaa acctcatcat cctcccattg ggaagtaact acttccagct ttaagaaagc 240 cctttcagct gctcgggccg tctccaccag ctgggaggga aataaggctt tagcttgatt 300 cgccccttct gcccattgcc cttcacccaa aagatgatct aggctaatta tcaagccctc 360 tgcatcatgg gacagggctg gcttttccca aagactcggg aggacctccg atatttctct 420 cccccattcc ctcacccaga ctctgaattc cataggcctt ataaggctgg agaaaagtgc 480 tctcagatct gccggaacta aatctccctg ggaaagggta ttatgtagca aaccccggaa 540 gtattctgag cttcgggagt agtctttctg tgccttgcac agttctttaa tccgtgcctc 600 tgctaagggc acccacctag cctggggggt ccctccccgc ttaggtgata gctaaccggg 660 gccgcttcta gcaaaggcat ttgctgtggc ttgtggccaa gcactccccc ccac 714 // ID JV172643; SV 1; linear; mRNA; TSA; VRT; 1827 BP. XX AC JV172643; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15461.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-1827 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-1827 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; c6a40dc0cb64e3d74af0455c45a6dc67. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..1827 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 1827 BP; 544 A; 285 C; 352 G; 646 T; 0 other; aaaatgtgat tgaactatcc ccatagaaaa atcattcttt cagatatcac tccactccca 60 agtgggcttc cacccatatc tctttcttat ctgcaaaacc agtgctgtcc attgaggttg 120 ctatatcgct caagtgctca gagggctgtt tgagatctta gatataggga tgatggattg 180 tgtttctagg atgaatttca aagggacaat cgtgtgcagt tactagctat agatgattga 240 tataaatgtt tacccctgta tgaagtattt tacagtttta cttgcagatg tgtatttatc 300 ttgagttata cttgacatag agtttctttc aatttttttt taatactatg tgtgtatttt 360 ggaaaccttt ttagatgtta aaatttttga atggttacaa atatttctta taatactgaa 420 ttgttatctg gaaactcttt gcagtagctt tttgtatata tttgagggcc tttttaaaaa 480 agtattgttt gttttttggg caaagttttt acaattggga agctttcaga agggccttcc 540 tctcaactag gatactaacg gaggtaagag ttttcttaag tattttgcag tattttgcag 600 aactaaggat gtatcctcaa gaaaatattt atggaaataa tttacgtttt ttttacaatg 660 cttttgtctg tataaagtat gcaacagaac tacattaaga aggaaatatt gtctacataa 720 aatattatat gaaagttggt acataattct gacaaaaaac cttgcaattc tttaagccat 780 attgtttttg ttatccttgg atgaaaatat cagtattaag taaccagtgt attattcgag 840 tgcttagact tatatgaaaa tgcttatacg gtttatttat gtgtatttgg ggaacgagtg 900 ctagaaaagc tatcactaga catgtagcaa gtgaggagca aatatcagaa tactgtcact 960 ttatggcctt gtgagggaca cagcggtgct ggaagcaccg tggagactcc gctctcagga 1020 gctccgaagc acaagtggtg ggtttcaaat ggtgcctctt cccttccccg tgactagagg 1080 ggaagaaagt gggttgggac actgtttaac ttgactttca caactctttg cagactgtga 1140 gctcagctat gcagtatcat ctatagcaat aatatcaatc aaaggatgta agagaaaagg 1200 attgaagtag attgttgtag gggtttacgt ttattttaat tagaactgat agcaatatag 1260 aatatgcatg tgcacgtatt cgaagcattt tacactttac atttcatgta atttgattat 1320 attatgaagg attgagtttt tagtttgata tttaaccatg ttaaaatggg aggtcagccc 1380 agccctatac tggattcttg tttcctttaa aaggttattt agtacagcac tcactgcatt 1440 gtgtaatagt gctaaaacta acactatttt atgaatttct tcagctttaa aaaaaattaa 1500 cctaatgatt attacatttg tttaactgta cccactgacc ttgtcagatt cagttggcaa 1560 attgtgtaat ttctttttct gtaactgtta ataaacttgt acagctaaaa caaacaaaac 1620 ctatggacaa aggcctcaga ggtaccagtt ctgtttcagc aatcaagatg acagcttgct 1680 catcaggtga ctgtgttgct actgagactg taaaacctct gttgtggatt gtccataaaa 1740 tggcattccg acatgtgcct tatttgctgg atagtataca gctttcctct agtattctag 1800 cattttaatg ctgtattaaa gtattgc 1827 // ID JV172644; SV 1; linear; mRNA; TSA; VRT; 1137 BP. XX AC JV172644; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15462.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-1137 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-1137 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; f394b894f5bf8d5e4dd4efc6986bcaba. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..1137 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 1137 BP; 344 A; 262 C; 236 G; 295 T; 0 other; ccccatagcc aaaacaaatc aatgcacaaa gtctcaatag gcttagaata ggagacctgc 60 agatcagcat ttccaagtgc atatccagaa aacaatttca ttaaattgat tttgcactct 120 acagtcataa aggctgaaaa accctgttac cagagcttat tgacagttaa gactgttaga 180 tattgacagt tcaattgact gttactggag gaaaaattga catactcccc ctccccccaa 240 gcaataaatt acaaactgta taccagaaag gaagttacac taaagttttc tagttaactc 300 tcagaaggga atcattatcc tttatttttc tgtagaaata aaaaaaacca aaaccaaaca 360 gatcaaaata tccaaggtct tagtatatct tcaagtattt tcaccaaata gattactcct 420 agggaactga acagcttaca gggaaggaca catctgttac acaagcttct gggataaaca 480 gttgaatcac cacaccttcc aagtctcaga ttcctgtaat agcaaggcac agaaggattg 540 ttgctttcaa atgctccttg ttctcagctg cagtattgcc aggtgtcctg tgcaaatgga 600 ggctgaaagc agggctaagt tcacttggac aaggaatgga acagggtgtt atttcaagac 660 catctatctt gcttactgct acagattctg agctccagct gctttccacc tcttccctgt 720 ctctggaatg aagttctgca tcaccttcat ttgaagtagg tccagctgag aggaggcagc 780 agagctgtgt gctctgcagt gcccaggagg atgaggagcc aggtcagccc tgctgtggct 840 gtgcagcctc tgggcacttc agcgggcaga gtcggggaca gccacctgca gcaagggtta 900 acaggtcact ggtaaaggca gaaggcaaat cttggagatg acaaaggcaa ctggatagac 960 aacagtgaaa ggacacacat aattccaagg acacatttca ggggtgttac acaataactg 1020 acatcacctc ctaacccctt cctccctttg cactgaggtg ctgatcatga tcaggggctt 1080 ctaactgcac ttgtctgatt tacatttcta tcctacctct tcctaggtct agtttgt 1137 // ID JV172645; SV 1; linear; mRNA; TSA; VRT; 1430 BP. XX AC JV172645; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15463.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-1430 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-1430 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; 59d37f36fd81b7d7a1b31d62eefc981a. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..1430 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 1430 BP; 331 A; 414 C; 245 G; 440 T; 0 other; tcccctggat ttttagcaag taacatcctg cagatggatt ttgcctcctc tgaaaacttg 60 tctgagtatg tttcctggtc ttcctttact ctgcggtcaa tctcatcgcg tttaactctt 120 tccttgtgct tcctgaaggg agactgccct tcaatcatct cataaatcaa acagccaagg 180 ccccaccaat ccggactgaa tgtatacttc tcgtttttag cacttctgga gccatgtaac 240 caacagtccc aacacgtcct cggacagttt caccttctgg aatctgcaca gctaatccaa 300 gatctgaaat cctgatatgt ccacagtcat caagaagtat attctcaggc ttcaagtctc 360 tgtaaacaat tctctccctt tgcaaatcct ccagaccaca gcacagttct gcagcataga 420 aaatagccct ttcttcatca aagccaggat ttcccatgtt atatatgtga aacttcagat 480 cccctcccat tcattatggt taacactaaa cacagagcat ctttgtctca tatgtatagg 540 ataaactaac tacaaaccta ctattcactt tttctagaat tcttttttca tttagagcca 600 ttgattctcc tttcctcttc tttattctct ttttttctag ctttttgcaa gcatacattt 660 ttcctgttgc ccgtacttga caggcacaca cctctccaaa tccacctttg cctagtactc 720 ggtaatgcct aaacgtgtgt ttggttactg gctgcttttc cagccatttc cactgtaaga 780 agcgggaaaa atacacactc tcctggtaag cttcaaaagg tcttttgctt aggtattcat 840 ggacaattct agtacagtcc atgaaaagat ccttagaagg gttcttttcc agccttgctt 900 tacattcatt tactgtttcc tgaggtattt ctggcaagtg tgctgcagac ccattagtga 960 agtatgtctc taaaactttg aggccacagt ctatgcgctt ttcatctgaa gatacctcat 1020 attctgccac tgcatccaga aattcaatgc atcttttcaa atctggtcta gaatcacaga 1080 actgtctgaa gagaagtctt cctattggct gtttgtcaca aagctggtta tagtctcttt 1140 cgatggagca ccgaataccc tcacagtgac tgacaggggg caacttcagc atctctttcc 1200 attttttact acgcccactc cgtttgccct cccgggcttt cagcagcacc gtgttggcca 1260 cgatgttctc gatttccatg gtcgggggct ccttcgcccc tacagcctcc ttcgccccct 1320 cctccagccc cgccaccgcc gcggcgccaa gcctcggctc atccggccca agaggacctc 1380 agcactgcgc tcgcctcttc cccatcaccc gctgctcgcc ccggcacccc 1430 // ID JV172646; SV 1; linear; mRNA; TSA; VRT; 517 BP. XX AC JV172646; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15464.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-517 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-517 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; c05a301504799449bd2f67722b119069. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..517 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 517 BP; 176 A; 106 C; 92 G; 143 T; 0 other; gtgagaaagt ctgaacctct aaagttgagt ttcacctgga aagctgtaag aaaaccccaa 60 ccccactatc acaaaaatcc tctcctgttt cattactgct gtgtgatgtg agaaggccac 120 agagcactga tgcttttaca cagtcctaca aaacacttag actgcagtgt tcatggaaat 180 tacacccctg taacagtgtt ctgctttagg taattaacac aagaaatgac tgcactaatg 240 caactcaaat gctgagtaca aacatgtcta agaaaataaa attttaacaa agatatatct 300 tgtctcctag gcaggcttca gaaatatttt cagggatgtt agtttgtctg tactgatgtt 360 gcagctatcc aaagctgtga attgttacca ataatagtgc agataaccat ttcagccttc 420 ctgcacaacc caattcaatg caaatcataa ctgtagtcta ctcagattta tgtcacttca 480 ccaagagagg ggaaaatgtg tgaataggaa aaaaata 517 // ID JV172647; SV 1; linear; mRNA; TSA; VRT; 407 BP. XX AC JV172647; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15465.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-407 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-407 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; ed430df9c755bc084652aa5d05a52a55. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..407 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 407 BP; 119 A; 79 C; 69 G; 140 T; 0 other; tgactgggca tcacctaatt tttaagtggc attcttgccc catcattgtg attgtatccc 60 tttctaataa gtaatataag aaaagatcta cataatggga aaacatacat attaatatat 120 tccatgacaa acatgttaag tttacatatt aatcatggta aatagaagtc atgttttaca 180 tttttcctct tcagcacatt attctcttga cagcttgctt tccctctggt tctattcttt 240 tctggtgtac attccactgc ctctggtcac tctgttagtt gcagaaggag aaggcaggta 300 tttcagattg agtaaatatt ccatggccag ggccaaaatt tttccttgga tctttaccta 360 tgtaccaaaa tgtacagcag agcagcatta gacagtgaaa atggctc 407 // ID JV172648; SV 1; linear; mRNA; TSA; VRT; 1114 BP. XX AC JV172648; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15466.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-1114 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-1114 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; eb164fb5938e0661668556914431e9ac. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..1114 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 1114 BP; 315 A; 292 C; 190 G; 317 T; 0 other; ccccctggat cccctcttgt caggatgtga gtccaacctc ctgcaggtca atctaaccag 60 cacactctcc tgctgctcag catcttcact aggcagcagg tcccttgttc atcaactaaa 120 agtaggcaaa ctccactcaa cttcctaccc acaagtccct tctgaagctg ccctgagtcc 180 catgacagtc tctggaaaac agggaactcc atcttttcta ttctgtaaat ctatttgttt 240 taatcctact gttatactgg acaaactgcc ttttgatgga agaaagttat attaccttat 300 attaccttat aaactagttt cctggtgttt tttggtttat gtgttcttat tggatttttt 360 aacagcctgt gttgctctag caaataacac acctcaaaaa aaagccatat taatgaaaaa 420 tatttcagat attttcccct ttgtcacaac attatttatc agtatcttca ttttgagttc 480 ctcatctttc aacttcctag aagtaattag atttaaaaga taataaaact actaacaaca 540 accctcatgc tactgagaac cagaatgaaa acacctaaag cagtggctct gctttgcatc 600 tatcctgcaa caccctcagc ctttcagtaa cctcaggaag agagagtaaa ccagccaata 660 ttcctactga ctgcatatcc tgtgcaggag ctggctgtgc cagtgctcca aagcagggag 720 gttcaggaca gaatggattc atggagctga gaacccacca tccacaccac acatatttta 780 gctgataact ttggggtgcc tctagcccac tcccagggac tggccaccct tcacagcttc 840 cagtttagct gctattgaaa aaaaccccca tgtgtgcctg ccttaagact gccttgtaac 900 acaagccaaa gcagcaaggc caggagtttc tcttcaaaag cacattcctg atccatggtt 960 caggctcctg gatcctatcg tagtttcact accagtaata ataatacaaa gatcatgagt 1020 caggctgtca aactgctcct atttccctct acagattaat tcctccagaa ctgaaggttt 1080 tgctctccag aggcacccgg cagccaaagt gatg 1114 // ID JV172649; SV 1; linear; mRNA; TSA; VRT; 2769 BP. XX AC JV172649; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15467.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-2769 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-2769 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; a14d4210020fb5268321677ae0d15fe3. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..2769 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 2769 BP; 795 A; 558 C; 586 G; 830 T; 0 other; ttggcagtta caatgctaat cattccaaat ctaaatattt ttctgtctgc atgctttctt 60 gctggatagc cagggaagag ggtatgtgtt tctgccctcc ctaccctcgg aaaccctcca 120 taaacctaga gctagctgta tatttcaaaa tatacattgg cttctgaagt ttaaaccaag 180 aaaaaaaaag taaaagcaag cctgaactat cattcctatg gctgtctagg gcaggttcct 240 ttccactgct ttatttagct ccctgccaca actttttttg gctacatgtg tcattggtga 300 caatttgcaa gaactaaatt ctggcaagtg cgcggaacac gacgcctcag cactgtgagt 360 atttccaacc cagccctctt gttctcctca ttaacagtct ggggctcagc accttttctc 420 cccaaatggg agagacttaa aggcactcag ttgtcttccc tgtattcctg catactggca 480 tgcacctgtt ggaaacacca ggtagaacac gcagcaagat ttctggaggt tcttcacata 540 ttaggaccct tgctggaaga tttatatgaa cactaacttg gaaaagttaa actaccatct 600 ggggaaagga acaaagtccc ttgagatctg atatgcaagc atagaaaaat gcttgctctt 660 ttctgaatat tatttattct gtacataagg tgactaattc accttttaaa gacgtaaaag 720 tcccaagaag gcagttttta atgacttaca tccaatattt atgatacata tggcttttta 780 tcccaaatgt caaaagtgaa agaaaatata gctattcatg tggcaatata aatagacaga 840 ataataattt aatatgcaat tagactcttt ctaaacttaa attaaaccat tggagttgta 900 aaacttcatg ccccgacaat ttcagtgtta aagggaaaat acaccatctc caaaagacta 960 gtattttaga gaaagttctt gaacaagcag aaaagtccct gatattgctt tggtataaag 1020 cagatgtcta gcaataatct atacaaggag tgtaagccct atataatata agctttgaga 1080 gtgcaaaatc agcagggatt ttttttttgc tattggtttt gttttgtttt gttttttgtt 1140 ttttttcaat gggagagttt tataagcttc aaataaatgt atgagctcct gtaaatataa 1200 gtattaaaaa aacctactgc aacatacatc aacacttctg cactaaatga ctttctttgt 1260 gtaactctga catcaagagc aagtgttcat gttaaatata ctctattttc ggatatgtag 1320 agtaactgca gtgagttatt tatgttttca gtgtgcctat gggtttggaa ttcttttttt 1380 attctcccct agcatcataa ataacttttg gtccgtctgc tttgttgctg ttgtgcttaa 1440 gggttttatg gtggtgaaat aaaaatgaca atcacatgca cactgtcata catatgcaaa 1500 atatgtgtac aaaaaaggga gaactccatg ggaaaacagg gaacattact gctggaaaca 1560 ttaaccgggg agaatgggtg gtgaatgcaa gtttcacaca cagtgggagc agatacacat 1620 atcaaagtct atcctcctgc acatacttct gtttgtcccg ggaatctctg ctcttggtgc 1680 ggttcggtcg gttggctgtc gatgggatgg agtgaactga tgagctcttc ttgctggaag 1740 agtaggagga atgggaggaa tgagaaaggc tggctcggga ctggccagcg ttgtggtcaa 1800 attgcatcaa acagaagatc aagtccgtcg gcacaagctc gaattcatac ggtgggtttg 1860 tgataacata acgtttagtg cattggctgg gagtacttag atgtgcatcc cttaatcgat 1920 aaattccaaa gcaaagcata ttgtatgttt tcagtgcttt acaaaagaga tctccataac 1980 aacctccgtc ccctaggtct gcaaatggcc catcatacaa agccaactga gcaactcgac 2040 acctgtccct gtttgcaagt gtctggggcg tgctgtagcc tcctctcaat gcgttttcct 2100 cagcaatcag cgcttccagc tctggtgtgg ctcctcctgt taccaatgtc cgtatcagtg 2160 tgaggatatt gtcattgaag tatgttgcgc tcatgaggga gtccagcacg ctgacagcaa 2220 atgcggttcc acaagcaaaa ggctgcgtga gatacagttc tgtgtcggga tcatcatcat 2280 catcttggtc caagaactga acatttgaat catttactag ctctgttata atagggatat 2340 tggctcctgt tgtaatggag ggttgacgta aaaggccatg gactggacta ttgtctggag 2400 atgtcctatc catccctgga ggcgtaaagc cttgggaatt agcctgcaag accccaatgc 2460 tgtcatcaaa ctgcatagat ttgatgttga gtgacgccaa gatgcattcc ttgtcctgca 2520 gcgaagcatc atcaatatta ttctgattgg ctgacaggat aacgcacatg tcgcagaggt 2580 tgatgttgac agcccttaaa tcagcccgac ttaatggcgt accaggcaag attgaaacct 2640 tggggaagtt atgcagtgtc tcccattccc ttctcaggta ttcaagtgaa cccacaaaca 2700 caatgtgctt gagttcatgg tagtgaaagt tgctggctcg taatggcatc actaaatttc 2760 ttaatccaa 2769 // ID JV172650; SV 1; linear; mRNA; TSA; VRT; 470 BP. XX AC JV172650; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15468.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-470 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-470 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; f9727b88bacf7093bd441e55c2624794. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..470 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 470 BP; 137 A; 102 C; 108 G; 123 T; 0 other; tgggggtggg aaagaaaaca gtgtggtttg tttcccacag gagtctattt caagcctctt 60 caaagtagca gggaaacctg cagttgcacc tgaaaatgtg aaactcccat atttaaaaag 120 tcaatacaaa gcacaaatca ttcccagttt ccgtttatag aattcttcag tgttctgaga 180 tgaccttcag atgcagtaga ggggagcaaa ctgagagctg agacacaagt gctcctaatc 240 agtcatcttg aaccgcttcc cactactaga tgcactcccc aaaagtgaaa ttaggttgtt 300 atgccgaggt cctggtcctt catggacttt gtaaagtgca atcacttcct gggaagtcca 360 tgagaatcct gcaggaagaa atctgtacat cagtaggatt tggctcctac catgccatga 420 aaggaccatc atgtatatgg gatagatggt aggtggcacc tctgtccact 470 // ID JV172651; SV 1; linear; mRNA; TSA; VRT; 1437 BP. XX AC JV172651; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15469.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-1437 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-1437 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; b4190ed477335d5f1c854b8fb51a72ca. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..1437 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 1437 BP; 424 A; 321 C; 330 G; 362 T; 0 other; ctttatgaat tattttaatg aaccaaatat gaagtgacaa acacaggtca aggaaaataa 60 cacaaaacca gccccaccag ctgctgacag aagataaaga tccaagaata gttgaggaca 120 atttgagggc aaagaagaaa gtatagtgag agatagtcat tcttgccaag aatatcaacc 180 aaattaccaa atcacataat agtttaaatt tcaggtcaag tgcttaaata aggtctctgg 240 ttttttctta acatggtgag tacacagaac aatagggaat gggctatccc tgaattcgtg 300 gcaacaggtc ctatgagcat attccagatt tctccaaata ctggagataa aggtggctaa 360 taaaaagaga agcagagaaa gagaggaccc tttgtttacc cagccaggtc tcagaaatgg 420 aatgtgtttt ctagacccca gaatctttgg cataggctcc tcctcaatgt ctgcgcgagt 480 gcttcaatcc catgactgtg aaggtggctg cagtcagttt ctcatacacc agaaacatta 540 gagcagcagt aaggactgtc tgcaggagct ttgcttcaag gcctttgtag agtcccacta 600 acccaaaacg cctcactctc tgttgaagaa ggtaaagaac atttctaaga ctgcccagtg 660 ttcggttctc tgggttcagc ctgtgacgtc caaaccgcag aattgactgt actgtctgca 720 gaggataagt gagggtggtg gcaactgctt tggctattgc accaatgaca aaagcatcca 780 aagatgtgag ttgcagctgc tttttcaaaa gctttcgttt aaagccttca taaaacataa 840 actgtatggc aggattgaag accagcagca aggaggggaa agttccattc cacagagcta 900 agactccttc atctcggact atttgatgaa aggcatctat tatgcctctg taattggttg 960 gtacaatgtc ttcatttctg aattttgctc cctgcagctt caggcgtgtg ttcactaccc 1020 agagaggggt ggtcaggagt acattcacta ctcctgcaac aaccccaaga accaagtctt 1080 ttccagtggt tgaatgctga cctttgaccc agagggcttt aagactatta aatgtataaa 1140 aataaacaaa attggagcag caaaggctgg agataacagg aaaccatcct cgatatggtg 1200 ccaacaggcc ttcctctttg attatttcca aaaggacggc cggtgttgtc tttgacttcc 1260 gtttctcatc aacctgaagt ctaagtctag ctgtatccaa aggaaaaaat acagtcattg 1320 cagtcatact gcccacggcg ccggacacgg cgtgcaccag gctctcgtag gaggccacgg 1380 acgacatcgc ggcggctctc ggctgctgtg gctggggctg ctgctcggcc cggcccc 1437 // ID JV172652; SV 1; linear; mRNA; TSA; VRT; 2701 BP. XX AC JV172652; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15470.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-2701 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-2701 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; f6d822d0ec63eabfd898b7ad3234e756. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..2701 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 2701 BP; 556 A; 737 C; 464 G; 944 T; 0 other; ggtgaagtca tatggtttcc accactgtgc aaactgcaac acctttttcc tctgctcctc 60 aaagttctgt ctgattcctt ttctccagag ccgcggttcc aagtccagca tgccaccaat 120 aatttccttt ccaaagtaat gagggaaact gtgttgatct tcaatcacat gagcaaatcc 180 tccctgaagg ccaaagtcca cagaaaagta cggcaaccct ttaggaacag atttccgaat 240 gtcttttgaa gaaagatcaa ttaacttctt gttcatggac cactcttcat cagactccat 300 tatagctttc ttgaagtaga ttggagccat atctcctact tcttttggaa gaggaatgca 360 ttcatatacc atatgatacc tcttcttcat actcatgttt gtttctagga acacacagtc 420 caagtcttta gcttcaaaca ttttcaccaa cgcatttcgg aacatctgga tttcttccca 480 gatgtcttca tccaaaagag tggctgcagt atggtgctgt agaggggcta tcaggcagtg 540 accttcagta agggactggc tgcttggtag agacaagtac accttggtgc caattgcaat 600 aataagatgt ttagaaagtt cactgctatc aaagcagtag gggcactttt ccatgcatgc 660 agcaagttgc tggtgctcac ggattgcttt tcttctttgt acttcctcct cttccccact 720 gcgtgctctc ttggctgctt tggaaacaaa catatcatcc agagtgtagt actctctgtc 780 tgttttctcc atgagctttg atgccatacg catgaacagt gagttttgat cctctgctgt 840 tctcatcttc tcatttttta ccaaatcctt caggttcata ctatcatcgt cctgaaaata 900 ccttactctc tctttatcta catgagtagg catcatctgc tgctttcttc gtcctccttt 960 tggctccagt ggctctgttg ttcccatcac aggccatgcc cttccacttc catctgttct 1020 cacaaggacc acttcttcat cttcttgacg gcttgaaggc tctctgccag cctttgctgg 1080 catctgtccc tgagtctctc tcaacttgcg agcactgtca agttttgctt gaagttccga 1140 ggctaaatcc gtgtctccca tgagttctgc tttcacaatc ctcgctccca gtctgttcat 1200 ctcctcctca ctaaggaccc gaggtggctc atcctttgat gatctagagg atgatgtttt 1260 actgtcagat aaaatctgtt gcttctcagg ggtatcactt gcgtgttcct gtcgtaactt 1320 ctctttttca tcacttggag ctcttttcca acttttgcca tcaatttgtt ccctagtacc 1380 tgacgatttt tgatcacatt ttaatttctc attcctatct tctgtgtgtg ttttggccca 1440 cagcgcagta tcctcaccag gtttctggaa acggctgctc aaagagctat gagctgagtc 1500 ctccttggaa gagaactgct ttaacttgga gtctctggat gcactgtaag acgttaaatc 1560 atcttcagag ggtttcaaaa atttgtgttt taagttgctt agagatgaac tcctctcctg 1620 atttcgtttt tcactggagt atttttctgc tttggagctg tagccccttg gtactgagtc 1680 catgctactg tgtccacatt cctggtctgc tcttgacaca tctcttctgt aacccctgtc 1740 ttcctgtgcc caccccttgc catacttctc cctggaatag ctcccagacg tgtgcctgtc 1800 tctatcatct tcatctcgtg tcaccttttc aatatgctgt tctttcctgt ctttcttctc 1860 tttctcactt tctgaatagt cagtcttctt ccaccttcca cttccatgat aattttcctt 1920 tttggatgca gctttttcag cttcttctaa tcgcaactga aatacctcca ctgacccgta 1980 tctctcagct acaatttcat caaaatttcg cttctctctc tcagcctgct ccttcatcct 2040 ttggtatgat tttcgcagcc aacttaatcc agcatcttct accactgtaa ctttcttaac 2100 tgaagcctct tcatccttct ctggtggcaa acctgtacca ccatctttcc aatagggatt 2160 gagttctctc tcagacaaca cagcctgctc aagttcttga gctttctgcc gttccaatac 2220 tttttctttg tgtctttcac ctttgacagc tgctactgac attgttttca atgacatgaa 2280 gtttaaattc atccattctt ctctctgcac ggaaggttct tttgcagtat cttgctgctt 2340 gctgaccttc caagcctctt ctgtgtcatc tgactgtgac acatttgact caacccattc 2400 aactgaagaa tcggaagaac tatcaagcaa gtcatccttc ttttcagatt tctgtttctt 2460 acttttcttc ttttccttct tagctttttt ggaatgttta tcctttttct tttttttctg 2520 cacagaatgt tccttttcca gtggctccat atgttcattc acatcagcag gcacccatgt 2580 atcttcacct cgcagacctt ttagcagctt gcagctctcc ttcttctcag aactaattct 2640 ggcctgtgcc agcggcgcct cccgctgccg ctgctcccgg ctccgctcgc cctccggccc 2700 c 2701 // ID JV172653; SV 1; linear; mRNA; TSA; VRT; 460 BP. XX AC JV172653; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15471.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-460 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-460 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; a255cf81a275d733b48bbc95de989e82. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..460 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 460 BP; 107 A; 157 C; 112 G; 84 T; 0 other; caaccaggtg gtcccggagc aggagaagaa ctgggtgcac gtcagctctg acgccagcag 60 actggcgctc atctggaata cgggggcatc tacatggaca cggatgtgat ctccatccgg 120 cccattcccc agcagagctt cctggccgcg cagaagtcgc gcttctccag caacggcatc 180 ttcggcttcc cgcccgccac aagttcatct gggactgcat ggagaacttc gtcctcaagt 240 acaacggcaa catctggggc aaccagggcc ccttcttgat gaccaggatg ctcaaaacgc 300 tctgcaacct gacagatttc caaggcaccg aggaccacag ctgccagaac atctccttcc 360 tcaacccgca gcgtttctac cccatcccat acccagcctg gagccggtac taccaggtgt 420 gggataaaaa gcccaaattt cacccactcc tacgcgctgc 460 // ID JV172654; SV 1; linear; mRNA; TSA; VRT; 2282 BP. XX AC JV172654; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15472.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-2282 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-2282 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; d9a180be692850c7d979830fcbbe8305. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..2282 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 2282 BP; 510 A; 551 C; 447 G; 774 T; 0 other; attgccatta tgctttgatg tttccagaca cttggtaatt taggaaaact taaatgcgat 60 agaggagcta aaaaacatta gagaatgcaa aaagaataat ttagtgcatt tacatagcag 120 aagtaactaa tacaaaccct tcaaatgcca tcagctccaa aatttcataa acaaaagtag 180 ttgaacacac aataaacaca cgtggtgaat gcacctgaag gacgtttacc tggttcttaa 240 acagaatcaa acaaacaact gtaagctgaa cagaatcttc agcttgtaac tgcaccacac 300 tcgttttcag gaacagtgat ggtcttttta ggctcttcaa agtcctctgt caaatctacc 360 cagttgtcct cggtctcagg cagagggacg gagattccca ttgctttgcg gatgccgtag 420 gtactgacga tgtcacctgg agtcacttgc tgggccagct ccttcaggtt attggttact 480 ctctccgcca agtgcatttc tctgtaagat ggacccagaa gacaaatcat attagggggt 540 ggttttgtgc tcagtcgttc attctgagca tcctggagtt ctctgagcag ctttgtagtt 600 tcatcaagtt tcctttggaa gatttcagcc tcttcagaat caaactcttc tataggcatg 660 ccaaagtttg taactgcctt tagagctgtc agtctgtcac tattagcagc gtccaacctg 720 gcagcaatat caatttccat aatctttaca tctttcattg catcacttct ttcctgtggg 780 ccttcagctt cctcacatgg catttctagt tctctcagag ctctagaatg tcctccttta 840 gttagaacat ccagcaaact atcagccatt aatagaggat aatcctggga tttcataaaa 900 aaatcttgaa tactggaaga tccttggtta gagtcttccc cgtatgttga gtagattagg 960 tcagaatctt ctttgcttat gttggcaaat gttgaatcat atgttggtgc ataggaactg 1020 aagggtccat aattcaagta tgtcactgga gtaactttgt ttcttttatc ttctttgaac 1080 ccctgtaatg tattaactcc tgactgaagc cttcctgctg tcattcccag ctttacaggg 1140 cagtaacctg gctctcctgc agcgaggtca acagggttaa gaaggcccag ggttgttgta 1200 ccatctggtt ttcttcgttc aaattcacac tggctgtttg caaggcgcct ggttaacttc 1260 cctccggact ccttcacaat ccgatcaatc tgctcctgtt ccctttccaa gctattgctc 1320 cgtaacttgt cttcaagcag gtctttatcc ttctttttgt gctctttgct gggtgttttg 1380 aatgctttgg tgtcaccatc cataggttct cctctgtctt tcccagaacc attttcctct 1440 tccccagttt gctgcagatc tgtcttgtcc ttctgcttcc ttgtcttctg caggtcagcc 1500 atgaattcta tactttgctt caggctctga attctctcct ggctaagtat cttcatccct 1560 gagtgcagca gtttttttgc agctttgtag taaatggtgt ctggtttgtt gtaaatcatt 1620 gcattattac acatcagttt gaagttatcc tttaattctt ctatggactg gtacccattg 1680 ttcttgatct tctctttcat ggtactaaaa tccattgggt ttttaatgat catggaatag 1740 ccaggggcaa taaagtcagt cacaggaaat gaaaagaaag aacttggatc ctttctctgc 1800 agctgtctca tgagttgatt cagagcttcc tgaagtggtg tctgctccac ctcctccggc 1860 ttggataaag agctcgtcag tggtttctct ggtgacaatt ccattctgac cggggtctga 1920 catttcagct cctgctctcc ctcactgtct ccatggtctc gatctcgttt ctttttatcc 1980 tccttaactt ttctcctcct cttctccttt tcttcaccag gaacttgttt ttctcctttc 2040 tttctctttt tcttttctgt ccttgtgttt ttcatgttca gatttgtctt cgtagaggct 2100 ggaatcaagt cctgcatttc cagtggacag ctcggcaact tcatttcctc caactttcag 2160 caccagcttc agtggctttt ctacgtattc ctcgtaggga tgtttgtccg acttgtgctt 2220 cttgtgcttc ttccccatgg ccccggcccg gcccgcccgg gagaggccgc gctgttgagg 2280 cc 2282 // ID JV172655; SV 1; linear; mRNA; TSA; VRT; 2344 BP. XX AC JV172655; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15473.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-2344 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-2344 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; e90abb6a21ec20df6f4c0cfa3535d715. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..2344 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 2344 BP; 700 A; 509 C; 446 G; 689 T; 0 other; gctccaaata agtacttttc tatttagaac aaaaccagga aaacccaaac ccaactttca 60 cttaaccaca cagaagaagt acagccccaa caaccattct ttggcagagg tagcacagag 120 gagccaggac ttgctgaaga tcctgggata tgtcttacct ggagatttta gttccattca 180 caaactcaca ggcttagtaa acatggtaca aaatattaag tctttccatt gttttctctt 240 ttagcaaaac atggaataat tggctacaaa ctttattcct caagtacatg aacagcaaaa 300 taaaagattt ggatggaaat ggggcaaagt ggagagaaaa atgtcagttt tcaagtaagg 360 attttcaaca gctttgaaac ctgaccacat gcaattagtg tctccatcgg ctgggcaggt 420 caggacagag gcagacaaac agtacaaaaa caactgtgtc cctctcaact actactccta 480 cttggtgata gccaaaacag ctgaagtttc tgtgtgacaa agctacaagt gggtccctat 540 gctgatgagc taggtagttt aacatcacct gatctgcaag acacccgtag cggcacaaaa 600 gaagcagaaa ccacttcaac cattgataag aacaattcct tcagagctta ctttgaggca 660 cttcatatgc agtatgcacc aaactatctc gtttgtatct tctcacacat gcacctacca 720 ccatgcggaa acttgacaga acattattac actgcagatc ttgtgacaaa agttacatcc 780 tgaagatttt caaggtagag ttcaaatgtg agcttgcttg cagtactggt tgtcaaagag 840 ttactgtgag aagaatgaaa ctgcagcagt ttacactaca atgtaagtga aatgtttcac 900 tttagtccaa agtgcaaaaa taaatactat ttttccttaa aaggtgctat cagtagttaa 960 gtctcagaga actgttccac ctagacccac ttattaaata ctaagaagct ttttacctaa 1020 ggaaattcta aggatgatct gctgtacagt tagctctgct acattataca gccaggctct 1080 gactacccaa tgtagctgaa aatacctcta ttatagcaga caacagcaca gcacccattc 1140 tgctctctaa gagcacagtg catgaggatg tgagggcatc cacatattgc tggttacatt 1200 tttggttttg cctagttcac cctgcagata atttttggtc agttataaag ctaatttgat 1260 cgtgtactat tgatagcatt tttttgctca ttcttgagtt gtccattagg tgtagcagca 1320 cttttgtagt cgttgtcagg tgcttttatc accaagagtc tgaaaggttc agttgttttc 1380 cgaagtctct gaacaacaac ggcgttttgc aactttgctt cttcaagcgt gagtgtctcg 1440 tcctgcagct ctcgaaaagg cagggaagtg gtcagtgtga agggaacact tccctcagac 1500 ccttgatact ttgttatgaa gtctctgaca tggctgattc tgtgagaaac attgaatttc 1560 tgaattatcc tttccccatc agctaaccag atctggacat tggtgacagg ctccaaatca 1620 ttcaagggta ctaaaggcag gtgtcttttg tcatcaggtc ctggatgatc atctctcact 1680 ttagagatta tctttggagt agcacttcct aatctgtaac catgtccaga aaagggatga 1740 aacattggct ttttcgatga caaatacacc ttatcctttt tatcttccac tttcacttct 1800 acctcctcct tatcaaacac tttttgcagc tcaaaaggca gttccccctt tttaatggac 1860 tccaagaact gctggtttgc aacatcagcg tagctccgaa gttcgccgtc atttactgta 1920 aacccgtttt tccaaagttt aatgattaca tcaacctggt tcttgactgt agttgggggc 1980 acacacatgg caccaacctt ctgagcttct tcaaaaaggt tatctacaaa gtagtcacag 2040 ttttgttctg taccgttcaa aatctgatca tcagttcctg atttacacac ccattctttc 2100 tttacagttt tgatattgtc catgtctttc attctggtgc ttcccctaaa agaagagaaa 2160 gactgagcaa gcaggctact tagcataaga aggaagagaa tcatttaacc aataaagaca 2220 gaatactcac taataagaga actatgcaaa cttgtagcca gtgaagatta gagtctatgc 2280 ttgctaacac gtataaagcg tgagaagctt tgatagtcgc gctggctttg tggatttacc 2340 accc 2344 // ID JV172656; SV 1; linear; mRNA; TSA; VRT; 636 BP. XX AC JV172656; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15474.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-636 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-636 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; 1fb3b69b4389ae6501f4871074c29170. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..636 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 636 BP; 177 A; 148 C; 140 G; 171 T; 0 other; tccaagaaat aacgccgtac atgttctgat tttttagaat gtagtggtcc agcagactca 60 tgagtctgta aatacacctc agatgctgtg ctcctgtttg gaagtgtcgc agcacttctg 120 gcctccaggc tcctcagcaa ggcttgtgtc tcatttgggt ttcatgttag ctctttgggg 180 atgcagaaat tgcatcctga actgtacaag acctacactg tgagagactg agtttcactg 240 tgggaggcaa actaacctgc taatggaatt aggtaacact catctattta ttagcaatgg 300 caccaagcag atttagcttt cagtggaaag tcacaacatt ttcaaacagc ttctaagtta 360 aaatctccca ttctatttac agacagggga agagaggagt gcatgaatga aatgcagctc 420 cctgtccaag cccagctggt caaaagcagc acctcttgca ccccaggtaa gttccttccc 480 catggggttg caccttctcc tgccacctct ctgatgccat ggattgagaa ccaaaacatt 540 catcatgaac attccccaag cactaaactg ccaactctta ctgggaataa gaaatatttt 600 ggttcctgtt gggactggag agaagtaaga gaggag 636 // ID JV172657; SV 1; linear; mRNA; TSA; VRT; 1244 BP. XX AC JV172657; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15475.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-1244 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-1244 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; 59f63c01da535475f757bc7eec77b2f2. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..1244 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 1244 BP; 272 A; 274 C; 307 G; 391 T; 0 other; agaagatgac ttggtcttgg taccctgctt ttttgtcttt gtcttttctt tgaggtcctt 60 cttcaaaggt ttacctaaat tctgttcaac cggcagagcc tctggatcaa ccatggtaac 120 atcagggtgc ctgggggaag ggctgcgatc ctgcattgga acagggggtg ggtcaatgtg 180 tttgtacgta attgtcttgt ccgttggaat ggtttccgac tcatcttctg agtcaatgtt 240 agcatctgca gtgatggaag gacattcctc agtctccggg ggaacatccg aatcggtctg 300 agacggggca gactcgctca cagacgtggg aggagtttca tcacactgcc gcccttgctg 360 ctttccccca gaaggaggct gagctccccc agactgagtt agtggcttct ccggatcttg 420 agactgttct tcacttgcaa accactcaag gggatttggg ttgataaatg aaggcgaaag 480 ttcggttttg ggatgtttat attcacaaga ggacacaagg cataagtcaa catcttgacg 540 ggattctgct aacgatttat tcggagtaaa atgtgcactt gcttcatagg aatagctggt 600 agcttcaggt gacctcccag tgctagctct cccagttgtc tcaaatgagt aatctgcggc 660 ttcaggtgaa ctggaggctt tcccagttgt ctcataagag taagtcatgg cctctggtga 720 cctggtggct ctcccaattg tctcatagca gtagccaacg gcttctggtg acttagaggt 780 tttccttgtt gtttcatagg aataatccat agtatcaggt gatctggtag ctttcccagc 840 taactcatag gaataatctg tggcttcagg cgattcggta gttttcccag ctgtctcata 900 ggaataatct gtggcctctg gtgatctggt ggttttccct gttatctgat aagaataatc 960 ggtgacctca gatgacctca tatttttttc aattatctca tatgagtagt ctgtaccctc 1020 aggcgaccta gtagtgctcc tggttatctc ataggaataa tctgtggtct caggagacct 1080 agtagttttt ctgcttgtct cataggaata atccatagct tgaggtgatc tagtagattt 1140 tccgactgcc tcataggaat agctgatact ctctggtgac ctcgtacttt tctctctggc 1200 ctcatatgaa taactaagtc cttctgggtg accctgctgc tttt 1244 // ID JV172658; SV 1; linear; mRNA; TSA; VRT; 1011 BP. XX AC JV172658; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15476.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-1011 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-1011 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; cdff6cc4265dffa0ac6e8b0ce495cc5c. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..1011 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 1011 BP; 330 A; 197 C; 213 G; 271 T; 0 other; aacctcaatg cccatgcaca gcccttccaa gactgatggc cttccagttt ctgtgagaca 60 tgaggtgccc ttccttcagc aggaactctc cactgctcca agactggcat tgaaaaactg 120 ataaactgct tttcactggg caggagatga ataatgaggg ttcacagggg agaaaattaa 180 agcacagccc caaaaggacc tcagagaagc gacagatccc cttgcttgct ggagaagcca 240 ctgaactgca gtaaaaactt ttctacacct ctaagaatac cttgaaatat tgagttatca 300 gtgagtaatt aatctgcata tctcttaatt ttggaaacta ttctatggca caaaccgtcc 360 tttgttggaa tccaaaatgc agggaattct cacaactttg ggcctggaag ccaaagctta 420 gaattaaacc caggatttga tctgagacct tagaaaaggc tcccaaactg aggtgctaga 480 agtgagaatg tggatttgta gtttaaagca gagacatgtc aagctaagta aaggaaagtt 540 tagagtttta gagtttgaga tatagaagaa ataaaagtcg ttactgaggt aaacaagaag 600 tttagaatgc agtactggag gtttgtgtgt catagcatga ttggctaaga aagctcacac 660 tgtagcctga gtccataaga caaaatattt aaggattggg tcaaaagcat aaatatcctt 720 gttggcagtg ttttattggt caagtaagtc cttaaaaggt cttgtaatta ggggtcttgt 780 gacctgctga gccatggggt aaagatgtga gccaaactca ctcttcctgt ctacatagaa 840 gataataaat cacatcatca aaaacaaccg aggtcccata tctaaatcat tcaaaattcc 900 ttccaaaatt ccccagagtg aattatcaca ctcatttcaa atatacaggt gagccagtct 960 aataacacac tcccattttt aggcagttag cagtgggtat ttgaagtctt g 1011 // ID JV172659; SV 1; linear; mRNA; TSA; VRT; 1044 BP. XX AC JV172659; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15477.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-1044 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-1044 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; 4a1984bb844510f982be990cdd741661. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..1044 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 1044 BP; 225 A; 263 C; 240 G; 316 T; 0 other; cactgctgac ttggatcaga gtctgtggtc atcttcacat agtttgaggg gaagagacct 60 gtcacaccat tgatttctcc ttgccaccag tcagcatcat ccttgttcag cacattgatc 120 agctgcccct tggagaaact gagctcatcc tcattgttgg ccgtgtaatc atacatggct 180 atcacctggc acactgaggg agcagctgat gtggttcttt cactgcttgg acccagcagc 240 ttcacatggc tggcagggaa ccatcccttc tgtctctttt tccctcttgc ctgcaactct 300 ccttgccacc atccactggc atttttcttc agaataagta tcagctgtcc tggagcaaga 360 ctgagctgtt cagttcctga tgcagcatag gcagtagtaa cctgagcgat ttcgggtttc 420 ttatttattg ttccagtttt gccagcatag ctagaagcat ctggatcttt tggtctgaca 480 taattggagg ggaagattcc agttctggta tcgatgctcc cggtccacca ctccccttcc 540 ttctgggtca ccaggatctc ctccccttcc aggaacgtca ggtcaccggg ctcggagctc 600 gagtagggat agagggcaat gtactcctct cctgctgtgt aattctgggt ataaggcctt 660 ttgtttacag ctgcataaat agcttctggt tcctctttct tggtttcact tccaggtaag 720 agcttgacat aggactttgg aaaccaaccc cttcctccat gtacctctcc aaaccaccag 780 ttctcctgct gctccaggac agtgatgatg tcattctttg aaaaattcaa gtggttatct 840 ttttttgcag tccaagaaca aagtgcttgt gcttttaggt tctctacagg ctgcccctgt 900 ccatgaacag gtgaaacaga tccaggggac acagtacgag taaaagctga tttctgttgc 960 caggctgtgt taacattcag gctggagaag gggatgtttt ggtaatcaga ttcttctgca 1020 gatttacttg gtgaaagtgg tctg 1044 // ID JV172660; SV 1; linear; mRNA; TSA; VRT; 926 BP. XX AC JV172660; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15478.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-926 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-926 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; cbb34e0774594a5936d41fc719f6396b. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..926 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 926 BP; 312 A; 214 C; 160 G; 240 T; 0 other; aaaaaattaa ccaaaccaaa ccaacccaaa atgcttgtcc aagcaaagca aaagagccaa 60 tctctccccg atctgctccg ggccttcttt tctgacagca cagtaaatta ggccaaaacc 120 taaatgggca tcactgctat tgacacacaa aggtaagtca ctctctcagt gtcagaaaat 180 aagcccttcc atagcccaaa ggcacctgat ttacaattaa caaatgaata catacttgtt 240 tgtaaagggt catgggctga aatttcaaca aagaaggaag ccagagccag gtgctcccac 300 ctgcagcttc ttctccctgt cagggcactg gagggcatca gtttggtggc aaaaaccaca 360 cagtcagtgt taaaacccta gaaaagctga catgctgtta aaccctcaaa ttattttgcc 420 tgtcattata ggttaaaaat tcaactagaa aactctagcc tcagttgaaa gccaactttc 480 cacgtgaagg gtacggtcat cctagagaac tgctctatca cagggacccc ctgctgcaga 540 caagagtcta gagatacact tgttcttaaa tatgccaaga ccttggcagg aatatgtcag 600 gcttatttca ctggacaaac aggcaaatgt gtgtaagcag cttatcccaa ccccctccag 660 cagagcacaa ccaagttttt aaaattgcca ttttaaaatt aaaaagttaa ggtaaataca 720 caatcaattt atgtagtata tattcaccct cagatcatgc tgaagatgtt ctgtggagtt 780 ctggtgcaca gagggctctt tccctgaggg caaaataagg acttctcaaa cctttatatt 840 ttctctattt ttgtaacaaa atagcaattt aaaatttaaa aatcttttaa aaaaattaca 900 tcaccttcaa catggaagat ctcact 926 // ID JV172661; SV 1; linear; mRNA; TSA; VRT; 716 BP. XX AC JV172661; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15479.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-716 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-716 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; 64718fad9e6ca788fcc00beb4bbac279. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..716 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 716 BP; 236 A; 158 C; 152 G; 169 T; 1 other; ggggtacaga aagaagagca ggcctatgag aagaagcaaa gaaagcttct tgccctctca 60 taccttcacc acttgcatgt ttgtacaaaa gcttacaggg ttcctcccct tcatctggta 120 tatccataca gtccatacag acagtgtgag gtgggtgagc cagaaactat taagaaaata 180 gttaaacttg aacgaaagcc agaaactatt aaggaaagcc tagattgtct caacctcaac 240 ctaaagccct aactgaaggt ttaatgttgt ggccaaggat catttaattc acgtgggtgt 300 ccctcctgcc tctgacagaa aggtggaatg gaagcctgaa gagactatga ctgctaccag 360 atccaaaatt aagggatagg gctacctgaa tactgaacct gaagttaacc tgaagcctga 420 ctttcctgag gggcatttct acagaataaa cctaattgca ggagcttatc aagagttaaa 480 agaagtgaca gggcagggag cacccagcaa agtctcaatg aacagtccaa gatttttgct 540 ccctcccctt catgactgtg aaaaaaaggg gtaaaagatt tcttcctcac agggttctct 600 ttcataccaa catttcaaaa gatcaattgc caataaatta agacaaaaca aaaaacaatg 660 catgtcctgg tggcaaggga agatgcactc cttctctgtc cccgtnacgt cagaag 716 // ID JV172662; SV 1; linear; mRNA; TSA; VRT; 4221 BP. XX AC JV172662; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15480.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-4221 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-4221 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; 0ac0c1d45b94f137501cba60163700d8. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..4221 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 4221 BP; 1027 A; 1056 C; 923 G; 1215 T; 0 other; aaacacaagg aatgaaatct aaatcttcat aaagatggat ccaaaacaaa atccctccag 60 tactttgtaa ttactgtttt gttggtcact actggcttta actgtttaac accaaaaaac 120 gaggacatat ttaaaaatca tgctactgga tacctagctc tgcctctgac cagctctacg 180 ctgatctcca aaattttaaa attttacatc atgaaatccg aagcatttaa ctgaacaaca 240 gctgtgcatt aaacacaaac aactgaacaa gaagattata agatgtaatc aagttcataa 300 cgaatatagg tgttcttttc atcattatag attcttgggt aatgtgctat cagagcatcc 360 tgtgagccaa tgtagattga attgtagatc ttccaataaa catctctgac ttttctggca 420 gggtgaaaca aaccctgtaa gcagtactgt aacatcctgc agggcccaat cgccactctg 480 aggccctcca gagcccccat aactgcctgg atgacgtgag gagaggtttc aaacacgttg 540 ggccacacgt agtttaacaa gtgattaaga gaatcctcac agccaaaccc ataaacacca 600 agggacatgt gctgcaccac tgcactggct gtttgtctgt gcaccagatc cctgtccatt 660 aaagcatctt caagcaatgg tgtaacagca taaatgtaat cttttcccat ctctccaatg 720 tattcaaaca ggaaagaaag tgattttaac acaccattct ggacattcag ttctggaact 780 ctgtattcat tcatgagtgc aggcagcact gtgaagggtg agcatgtttc agccacaata 840 gcaattgcta ctgtagtaca tactctgttc tgcctttcct gtactttcaa gttgtttagc 900 agtgtggcca atacatcgtg aggtccaata gcttttgcaa tataaccaaa agtgttcact 960 gtggctcttc tgatagcttt cttgtgagct tttaataact caagcagttc aaagcagatc 1020 ctcatccatt ctcttgcaga aacatactcc gcacctctgt ctgcaatacg cccaacaaga 1080 tcaatacaat tttcctgtac tttctcatgt ctgttcttca aaataggtgt caaccgtggc 1140 agcaggtctt tgattggtgg tgtcatcttg tgcataccta taacattcac aatagcctta 1200 agcgctccaa gtatgctgcc cagtacttca ggatattctt cacccaggta ctcatacaaa 1260 acaacaccca agtgtcccat cagtttttcc tcctgacaag tcttcatgac aactgcagta 1320 cgagagatca ggtcagcagc ctgctgcctg actttggctg atttgttgtt caaacgccac 1380 aaaactgtac cacagatctg tggcaagtag ggtttcaccc ttttgcccag agcattaacc 1440 actgtgccaa aaccattcag catcacagaa tcctctgtgg tctgttcctg gaaggcgtac 1500 aaaataccat caatgagctg ttcttccagt ttgtgatcga tgtctgctgc ccccagattt 1560 cccatgatct tctcaattgt ttccatgacc atctttctgt actgttcagc ttcatctttc 1620 agatcatcca caattctaga aataatttct gctgctccaa ctttatttgc cagctccaca 1680 gtcgtatcaa ccaactgtct gtaatttctt ctgtccagtg ccattctgtg ctgccagaaa 1740 tgtttgaaga agggtggcaa gatttctgtt ttaatgtagt ttgcttcaac accatctgta 1800 ccacaacact gctttaccac ctttaacaca atttttttca tctcttcatc aggagactgg 1860 aactctctga taagaatcag catgacttct ctggtgtagt agtttgcata ctcggcatcc 1920 atgagtggaa tcaagtaacc aatggccttc aagaacgcag ccaaaccctt tcctctgtgt 1980 tgacgtatac ccttccacaa gggtttcagg acagagtcaa atgactcaat accataggga 2040 gtggctgcct cagccaaagc agcaatggcc aaagcgctga tggtgcgaac cttctgctgc 2100 tcatccacca gcccatgctc aataatttca accaagctcc tgagatgagg caggatagca 2160 caacccataa gaatagcaat ctgctgtaca atcttgatgc cagtgtgcct ggcctgccag 2220 gattttttgc ttttacagac agctttcagg aagggtaaca gagaagggat gcccagagca 2280 gatgcaacaa cagcaaaggc tcgagctgtt gtatttctga cgtactcatc catgttatcg 2340 atatcaggtc gcattgtgga gatcattgtt gccaaacctg cagccttagc caagtttgaa 2400 ataatttctc tgccttccac tctagcatag tagtcttcat caatcagcag tggttcaatg 2460 acgacaagga tcttgtgtac gtatggtcgg accaagtcat ccaatttgta cagaattctg 2520 tcgatgactt tgacaagcaa gtgccgctcc tgatcttcga gtgtcggaga catcagcagg 2580 ggcaggatct gattgaacag cggccctgct ccgaattccc gagctttatc ggtaatttgc 2640 cgcagcgcag cctttcgcat gggaggcgtg ccattcttta ttttcagaag taatttcatt 2700 atttttctct ctttctgttc ctcaggactc agagtcgatt catcaacatc aaccagcagc 2760 ttgtcgaagt actggatatc atctggtttc aggaagggca ggttgcccga tggctggtca 2820 ttgacactct tcatggtgcg gtcctcggtc tgcatgtgga accccgtcat accccccagg 2880 ggcgtgggag tcgcggtgag cttccgagcg ggggtacgga tgggcacgta acctgctggg 2940 ggtggcagaa ccttatatcc ttcaggaaac atagcatcca attcctcatc agaaagtggt 3000 ctgtttctct catcaatttc cctctcccag cgccaagcct gcagctgttc aggagtcatg 3060 ctcatgatgt gacctggtgt aggggttgcc atgttcatag ctggggttcc aatgggtgtt 3120 ttgccaggtg tcagaacagg agtgctgccg cccatctggc tcgcaggcgt ttcatcccag 3180 cgggatttcc ttttgctcgc tcctggggtc ggtgtctcac caatggagtc accgcctctg 3240 tctgtacgag gtgtctcagc ccagccactg ccatggcccg gagtatctct ttctgttttg 3300 ggggtttcat cccagcgatt tttgcgtgca ctggaagtgg cacccccgtg gcccggcgtt 3360 gcgtgcccag gcgtgtcccg gccgggcgtt gcagctcctg ctggggtgtg gctgggagtg 3420 ggatcccaga tcttggagcc tggggtggca cctggagttt cgcttccctt tgcacggcct 3480 ggggtttcat cccatcgcag ggatggggtg tgccctggag tctctgcttg atcccaactg 3540 gacaatttct taggtgtagc accaggagtc tgatcagctg tctgatccca acgccgcttg 3600 cgttttgaag gtggctgaga agcggctcca ttgacgactt taagctctcc agctttagct 3660 ttttcagcta gttgttgcct aatttccctc tcttcttttg ttaaatgctg ttcacgcata 3720 acatccatgt acgttctggc attcatttta gggtctggag tcttccctcc atctgcaaaa 3780 ggatcgagac gctcagggga aattatcatc atccgcctgt gctttttgta ctcatcttcc 3840 cgatctgcaa tcttttgagg acggtgttct gcaaaaggat catactgttc agtagattgt 3900 ggtatgtcat taagcaatgc cactggagca tggtatcctg gcttcttctg gccaagcaga 3960 cttgtggaag ggtagtcatc atcatcatct tccaattcag tagctgcaat agatgtgaca 4020 tatccagcaa atctgctgtc actgccacca taaatttctt gatcataata tcctgtggaa 4080 tcaaggccta ctccttgtgc ttcatcaaga gcaggctttt ttccttgaat ttctcgaatt 4140 tgtgcttcaa tatcttcgtg agtcttggcg atcttcgcca ttttgtgcag cgccaacgac 4200 gccgaggcgg aactggcgcg g 4221 // ID JV172663; SV 1; linear; mRNA; TSA; VRT; 535 BP. XX AC JV172663; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15481.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-535 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-535 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; 421ba3c3289bb5b9c1176d5581aef29b. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..535 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 535 BP; 154 A; 72 C; 119 G; 190 T; 0 other; gtcctggctg acacacaagt ttgttctcca tattcattta atggaataaa tttttgtgcc 60 agccagtgct ttgcaggtgg taatggtaag taatggaaac actttgttta tattgggtgg 120 tggtggcagt ggtgttgaaa agatgtatgt tgtgcttaat tcttactgtg gtgcagcata 180 ggccagtagg gctcttatat ttgacatgag ttgtagagga aaaataatat ggctaatagt 240 tttactgtgt tctaccaaac ttcctgcaca caggtttaag atttaatttg gtatttacag 300 atgaagcggg actgcttact gtaaaagtca tgcttttgtc caatttcttt gaaatagtat 360 aatgttaagg ttcatgtaac tgatatatta ggtgggaaga aggactagct tatagtcttt 420 taatcaataa tttgggaaat ctttggaatt tctgaaattt ctggtaaaaa aattcagaga 480 acaaaaataa tcttgctctg tgttcacctt tcactacata ggagtgcagg ttctt 535 // ID JV172664; SV 1; linear; mRNA; TSA; VRT; 824 BP. XX AC JV172664; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15482.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-824 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-824 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; 53a46ee20d648ee8720e321afa82b226. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..824 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 824 BP; 215 A; 195 C; 213 G; 201 T; 0 other; ccccagcaca gtgcctgggg aagttgtgcc ttgctctctg tggccagaga gttgctgcca 60 cattgggata ctttatttga aaatattctg ttgtttacac tgaggcatca caggtcttcc 120 tgtaggtaat gctgctttac gtggaactgg gatcatcaaa tgctcaggag cagagccatc 180 actctggaga accagctggt gatcctgggg gtgtcactga tggatgcagg aggttactat 240 gtccaggcag tcaacgagaa gaatggggag aacaagacca gtcccttcat tcacctcagc 300 gtgacccgtg ccagcagccc ctcggacagc gcggctcccg ccatggtcat ccgtccccac 360 aacaccagcg tggtggcggg cagcagcgag gccaccctgg agtgcgtggc cagcgccagg 420 cctcttgaga ggctgagcgt gacctggaag agaaatggga tcaagatcac cagtggcatc 480 agcagctttg ggagacgcct cactatcacc aacccgacct ctgctgatgt ggggatgtac 540 ttctgtgaag ccaaactcag agagagcaca gaggagccag caagagctaa agctttcctt 600 tctatcttgg gtaattctcg aggcaatgtg ttttttagta aaaaaggctc tgggctaagg 660 tataatagga aataaaattg atatcttaat atttcattga ccttacattt gaacctttct 720 tcagagaaca gaacaaagga ggtgaaggag ggttatcttc caaattaatt cagccgttct 780 tccctgctaa tataaattca tcaaatagat ttttttaaac actg 824 // ID JV172665; SV 1; linear; mRNA; TSA; VRT; 1676 BP. XX AC JV172665; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15483.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-1676 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-1676 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; 14df874bfe59e6438d1718c3a3de8367. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..1676 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 1676 BP; 419 A; 415 C; 406 G; 436 T; 0 other; agatgaagca aatttattgt tccaagtgtt gaaattaggg ggtatttgaa atcaacagcc 60 acacacttga tgaaaaccca gcgagtatga atgaacaaat ccagaaaacc cttaaataag 120 ttacaaagct gtcgtgggag ggtgggaata taccagagag ccttgtaggt aagccatggt 180 ttagaaaaga tgccctctgc acaaaggaca ggcagagaac agcatcactg aggtacaagt 240 cccatttctc tcaggcaaat tactgcatag atatctaagg tttctgaaca gcttttacag 300 tatattaaga taacaaaatg aaaatacatt gtatttgaaa ccaaagagca gcatattaga 360 catgcactgg tagaaaacat cctgtgtgcc actagagatg ttaaaagtac catacacaac 420 ttggatgttc atctaaaagc ataataactt cctttgactt cattttttgt ggaaaaaagt 480 ctacatggtc atgaatctgg aattctcaac attcagctgt ggtgggtatg acatgaacat 540 agagggtctt catgttcaga ttcttcatag aaacatcttt tgtgatctca tgagttagtg 600 cttcatccag gaacagcttt agcctcctgc ttctgagccc aaaaactttt gcagtctcat 660 gcagaagagc tttgtaggtt aatccattct gaccaacagg gttttccatt aggagagttc 720 ccactgttcc tttctggcat tcttgtggct gggcattgat gagctgcagg ttgatgtact 780 ggcagagcag ggcactgggg gagctgggca ggccaggggc tgagcctgct gtcacgtgca 840 gagtcctccc actgagcccc agcaggtctg tgtgcttcag cagctctgtg tttccattaa 900 aaactgtcag tttggaattt ttaagaccaa aaatgcagga gacagcatct acaagtccag 960 tgaagttcaa ggtattatct ccttttggat tttccagcag caacacacca tcttgctctg 1020 tcccattgac acacactttg aggttgacat aggcacaggc tgggccagca ggctggcaca 1080 cccccctctg accagggtga tttccagctc tgatcccttc agttgtgttg tttcctggat 1140 gagaacttcc cttgaggtag gcaccgggta aggcttcagg tctgccttta ttgtggcaaa 1200 aatgaactca gcatgctgct ggatgatagt gtccaggtat tccccctctg gcagggccct 1260 gtagtacact gtgatctcat ctgtgggcac caggttcctc ttcttgcgaa gcttctggat 1320 gcggttgatc acctcccggg ccaccccttc atccaccatg gactggtctg gggtcacatc 1380 cagcagcacc aaaacctgag catcggagtg tgcctcgaac tgggcagatc cctctgtcat 1440 ctgatacatg agacgcagat cctccccatg gagctcgtgt ccttccacaa caatgctgcc 1500 tgtctcctgg aacctctcca gctgctcgct gctgagctcc ttgatggccg ccatgacggg 1560 cttgaaggcg cccttgaggc ggcggcccag cacggtgtgc tcgggctcgg ccctcagccg 1620 cacgccgtac cgggccttgt ctgcagagag ggtcagcgcc cgcacgttca gctcct 1676 // ID JV172666; SV 1; linear; mRNA; TSA; VRT; 1457 BP. XX AC JV172666; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15484.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-1457 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-1457 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; 5d5f2bdf0548a212647ea8fe065301ff. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..1457 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 1457 BP; 393 A; 329 C; 268 G; 467 T; 0 other; acaaatcagg gaggtgaaat tttttgaata taaaataaat acattttaaa aagacgcata 60 caaaagtcag taagtcagtc aaatagcaag gctttcacag aatgccacac tgacagaaca 120 tttgtgaatc catttcagtc atgaaatcat gttcacagct cgaatgacac gatcactgag 180 gcaagggaac tatcacttca acataattaa tggggaagaa gccagactct ccatttaaca 240 tcccctcata ccaattctca tcaatctgat tggtcaaagt tatgatgtcc ccttccttaa 300 atccaagctc gccttcattt tctggctcaa agtcatagag agcttggcag caaggctgat 360 ccatgtgcac tgaagaacct gatgatttta tggaagaact ataggcaatc ccattgtgct 420 gctgattatc accaatttcc agagttgtag ttattacagg ctttggctta aattcccgct 480 taggccgact ggatgctaca tttatccggt tttgcagctt gctctgcagg tcctccaaaa 540 tttctgtgga ttgtttatgg taatctaggg ctgcttctac aaacacagcc aactggctga 600 cctgttctac atcattttct aagaaattga acatgcttct ttcagccagt tcctttgact 660 cttcaaattt ttctactgct tgtttaactt cttcatcggg tatctttcca aaacgcttct 720 ttttataatc ataatccaag cggcgccctt ccagcttctt caaggtgatg cccaatctct 780 tttaagtctt tatcctgcaa taactgtaga ggatcaataa aattttgttt gacattaata 840 tcaagagagt ccttcacttc tgccatttgc ttcatgctct caccagcatc cagtagtgca 900 aggccaaaca tagactcatc gcccagctct ctgccatacc gtatcatgca gtctcccagg 960 agtccctctg tctgggggta gcctgtggct ttaacttgtc ctctgatctt tgacatagtg 1020 ttcagcattc ccagcttggc cctgtatgct ggatttggct gaaggtactc cgtggatttg 1080 gacagaagct ctgttacagc tttattagta atatcaattt tcctttccat ctcttgaaat 1140 tcctcatcta gctttgttcc ttctgctcca cttatttttt cactgaatag ctgatccagg 1200 gcaggagcaa ctacaaacaa cagtgagcaa gactctcaga catggtgtga tatccattaa 1260 tggtctgtaa ggattatcct taatggggac actggactgc tttcaatttg ccaaatctgc 1320 gattctatta ttttttaatg ttgtcagatg ggcagtaatt tcaagaattc agcacctgag 1380 aaaagctgtg cagctgggtg tgatctgttg tataattcag aaaatatgca tctaatcaat 1440 tgtactttct tggaacc 1457 // ID JV172667; SV 1; linear; mRNA; TSA; VRT; 461 BP. XX AC JV172667; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15485.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-461 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-461 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; 761c5ea9b4c49e271e599287e2c3c19d. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..461 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 461 BP; 110 A; 102 C; 168 G; 81 T; 0 other; gatgcaacag aactttattg aggcagtaaa actgaagaaa aagaagaaag agattgaagg 60 gagcacagtg tgaaagcagg tagggcaaac accagccgag gtgctttgct tgcaggagct 120 gttggcagaa gtcagagctg gtggtgtcag gggtggtgct gaggccctta gcagatgttt 180 ccatagcccc tcctgccata gcagcccagg cctcccaggc cgtagccaag gccaaagcca 240 aatcctccag agatgggctg tccctgggca ttgagctcag tgcccagagc agcggaggag 300 gtggatccga cggcggtgtt ctgggggaag gaggttatga tgggtcctgg cagggtgacc 360 agcacagggg aagggttgat gatgacgcgg gaatcctggc attgcagggc acagggctcg 420 ttgcagctgt tggccagcgg ggtgggtccg cagggacggc a 461 // ID JV172668; SV 1; linear; mRNA; TSA; VRT; 526 BP. XX AC JV172668; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15486.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-526 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-526 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; bcce12db1b1ac635c1ca56118d5a8862. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..526 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 526 BP; 172 A; 75 C; 93 G; 186 T; 0 other; tcttgtctga accagttaag gattttcact acaatttgat tttcaaaaca agtcatttaa 60 aacttaaaat gctgaaatca gattgttttc cctgaatact atgcatgtgt ttgcagtttc 120 tacactcatg ctcatgtagt acaaatgtgg gtcttactta actacaatcc tttaaaacgc 180 atgatttgta tcagataagc aaatattgta taaactgaac ttgaagacat ttaatcattg 240 caggttttgt gaggagactt aagtatgagt gttttccaag ttccacggaa acagcttttt 300 ataaaaacaa aggtttattt gaattttcaa tgggttagtg atcaagcatc agatagtact 360 aataattgta gtgaaaagcc ttaagtaaca aattttggag cagctgtact tataattttg 420 tactggtatt taagacttgt tgcaaaagtt aaatgataca gtgactggta atgattgaag 480 tagttgcctc tatcatgtta ctagtgccgt ttctaaacta gtaagt 526 // ID JV172669; SV 1; linear; mRNA; TSA; VRT; 1033 BP. XX AC JV172669; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15487.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-1033 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-1033 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; e6bb366a1304dc2ded491e3e4c082de0. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..1033 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 1033 BP; 256 A; 297 C; 275 G; 204 T; 1 other; acctaggaac cttcttattt aaatatgtaa aacatggtat tttggcaaca ttcattttct 60 cattaaataa ggtaaaatca cggaagggaa aggcattgca tcagtaaaac caaggagaag 120 ccccccagtg gttcatgtgc ccagggctgg ggtcaggtgc agattgatgt gggacaggaa 180 aagcctgtaa gcgacagcct gcgctaagta cagcagagaa cctggagtaa ctgctggggt 240 tcaataaatg tcctggcaaa agcagcgttt agtaggcact aaatccaaat tctacctctg 300 aactaggaca aaccaatgga gttttaccca catgctcatc tcttcccact gtgtctcaac 360 acctcacacc tcccacccaa gtgaactaag ccacacgtac cagaggaaag gctgccgggg 420 cagtgagagc ccctggcaat tcccggatca tccctaaggc cgctccagcc tgggctcgtc 480 cctcctgtgc gggctgcaga gcagggccca cgttccacca caggcacggg aggggcgggc 540 tgggcacggc ccagcacggg ggctgcagaa agctggcgct gattgaaaca cggagctgct 600 ctaatgctca ggtacctcac taccaagcac taagggacat cacagcatct gcacgtgctc 660 gtggggttat ccagcgggga ttgatccgga aggctctatg tgacacggga gctccagcgt 720 ctcccttccc atttttagac taaactaaaa caggacacgg acaggacaca cacacgacgg 780 ccacgaccag ctcccctcct tgcacctcct gcgctccagc tgcggctgct ccgctccagc 840 tccaccccgg tgcctctaga aggtgctgct ggaggccgtg gtggtcaggc gcctcccgat 900 gtaaatccct agtccaatgg ccagcaggtg agagagcagc aggggatggg aggaaaacct 960 tcaggaactc tgcagagaat actcccccct ttnttcatga cactggtgtt cctcatgctg 1020 agcgtggcgg tgc 1033 // ID JV172670; SV 1; linear; mRNA; TSA; VRT; 2651 BP. XX AC JV172670; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15488.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-2651 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-2651 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; 7a752cf84f2adb57195995084898d6dd. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..2651 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 2651 BP; 674 A; 648 C; 581 G; 748 T; 0 other; acaaagcaga tcctgaggca acctgtgcct ttctgtatta ttatgtaaat aaatggaaat 60 aatgatcaaa ctcgtaagag ggtgaaaaac atcaagacaa accatccatt tataacagag 120 ctgtatttaa aaaaataaaa atcaaagtgc actgctggta catctcattt gagcctatct 180 ggtatgtgaa taacagaggg gcatgatcca gtctccaaag gttccaaggc tttgtttaag 240 caccaaggca ataaagaatg atggctgttc tgttcatagc actatgactt gcatgacaac 300 ggaaaaattg taccagaata tatagtaaac atcttttgta tactgaggag gcaaatactc 360 ttaaattatc tgatgtgtac agtactggta cttagtgtct tggtgccagt accagactgg 420 tccagtaatt aacattcaga tctatttcta attacagata aggcatataa caaaaaagta 480 aatatttggt tattgatatc tcgtatggtt cagcaaccca accagtcaga gcttatcttg 540 ccaattttaa caatcttcaa actcttgtct tccatttgta gatagtactg atctttgaaa 600 aagtaggtat atccactgtc cccaaggccc aggacagcat cgaggttatc tggaacacca 660 ttccaagagt cagcaatgaa tttaggggat gcaagctcca ttttcttctt ttcttcattg 720 tacttccagt atctgtctcc agcaaaaatg tacgtcctct tgttcctgcc ccagttaaag 780 gctgcatcca cacgctgcac atcagggggc agccccaggc tgctgagctt ctttggatag 840 cccctctcca ggttgctggc tgaataaacc cagtactcat ttcctgagaa aaacacagac 900 ttctcgtcct gaggggcctc atagacagca tcgattttct ctggcagatc aggccagaat 960 gtagcaacaa gaagaggacc tgtgggtttt cctcgggggt ttatagtcct ccacatgaat 1020 ctatctttga agaaaaacgt ttctcctcta atttgtgcga ctccatcaaa cacaatttca 1080 tgcttgcaga gctctggagt gacaggtccc agggttggct gtgggcctgg tcctggtcct 1140 ggtcctggcc ccacatcagg tgacacctca tacagctcct ggatcccttt gatgtcatcc 1200 tgagagagtc tgaagttctt ggtgtaggtg tagatggggg ccatgagagc ccccgggtcc 1260 tcggagtgct ctaatcccat tgcatggcca aactcatggg cagcaaccaa gaagagactg 1320 tacccttggt cgggacagaa gccccacttg cggtcgtcgt cgtagctgct ggtggaggcg 1380 caccagagct tgccgtcgct gcgccccgcg ctcgtgcacg actcgtactt gttcccgagg 1440 aagatgaagg ggaacacaca gggagctccc tcggaattgc caccgactgt ggacatggca 1500 gtctctgggc agaatccgta tttcttatct ctgtcgtagt cctcagtggt cccacaccac 1560 cggtacccgt ctgtcctgcc ttctgtcgtg cactgctcgt aggactggcc ttggaacttg 1620 aagggaaact tgcatggctg cccatcacca ttgccaccca ttgtaaaaag tgactcatgg 1680 ggacagaatc catatttccc atctgcatcg aagtcttggg ttgtggagca ccagaggaat 1740 ccatcgctgc gtcctgcatc tgtgcagctg ttgtactcct tgccattgaa ccagaaggga 1800 aatttgcaat attcaccatc tgcatttcca tacttcactc tgaccacttg tccctcccca 1860 agagtccaca gctcatcatc atcaaaatgg gagtctcctc caattcctgg tcctggtgca 1920 aaggcatgag ccaggagacc atccttgcca tcaaagggat agccatcacc atgttcccat 1980 cgaccaaaat taatcataat gtctgcttct ccatcgtgta tccggttaaa tctcagtggt 2040 gtgacatcac tccagacttg aaaggctcga gcaaaggcat cgtccactgt ctcagggtcc 2100 aaatccgggg tgtagcctat aatcctgtat gttatatgat tcttttccca ttttggcttt 2160 cttgcaaaga agttgtaatt ggctacatca gggttaccac agcggggttt cttcattgtc 2220 tcaatagtat tttgatccag atctcctgtt tcaggcagcc caaaaaattt ctgcattttc 2280 ttcagggtat ctttcaggac aaataaattg caactgtctt ttgggcagcc atagtattta 2340 ttcaggtatt gcactgctag ctctttgtct gttttgggag tgctgtctcc aggaaacttt 2400 atgattggtg acggcgcagc taaagttctg tgaaaaagat aaacttggag gaatagtact 2460 ttaaaaacga agccatggcc aatgtgagtc ttcattctgc ctaaggttgt gctctcctct 2520 ttggaaaaaa gcttttcccc acagtctctc ggttacttta gctgcaaagt gcaccagtgg 2580 cttatctgca catcttgact ccgagcaccg tgctcccttt tgcttgctcc agcagttcct 2640 ttgtatgttt c 2651 // ID JV172671; SV 1; linear; mRNA; TSA; VRT; 3775 BP. XX AC JV172671; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15489.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-3775 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-3775 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; 4dc639bb2f179b24ab3b028f55d484ac. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..3775 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 3775 BP; 1088 A; 829 C; 704 G; 1154 T; 0 other; tacccacttc atatctttta ttgaaattgc tgaatacttt atattacact attttgattc 60 aaaatggagt ttttataaaa agaaaccatt gttgaaactg aataagccag ccaaaaggaa 120 caacaaaaag tttcaaaaaa ttctgaccaa tgcatgttct tgtataatgc tttgaaaccc 180 taacattgtc cataatttca tttaggaaac acctggagag gagcaagact gctagagaaa 240 aactgacttg catttattac cagcaacatt tcaaattaat gaccatggcc aggatcatag 300 catacagact acaaattagg ttatcagaaa atattggccc agatttattt tcttgaaatt 360 aataccagag agaggcatta tgcagactag ggctcctcta gtccttgggt tttttttatg 420 atgacaaact gggtagtgca gactgtatta taggaactct gcctctacgt tcttgaagag 480 tctggctctc tgtgcagttg gcccagtcca gccataatca aggaaaaaaa aaatctttgg 540 gtgcttgtca gctgcttagg caaatactga tgaagtcagt catataacca gtaccaaaaa 600 aaataaaata ccatgcgaag aacagcaacc atttcaggct aaagctatac agaattgtac 660 cttttaatcc acacctctga accaatgatc tgtttaaatt agaatggata ttcaaattta 720 caggataaat tagaccagtt ccaaaattta catcaaatca tcccaacaca caaaagttat 780 acttttcctt gtctcacaat gggtgagccc atagaagaat accctgccgg caggaagaac 840 aagttactat taagcaaacc tgagtagtga ggatcaataa atagaaggag ttaaaacgat 900 agtagtcgga taacttgagt ctcagaagcc aggggcttca ttaagcctta atcttttcct 960 ttcaaaggtt tctctttttt aagcaagcat ttaacatcta tgctgagact taaaaaaaaa 1020 agggtcctgg ctagagagag tcaactaact cagccaactg gatgtcagaa atccagtcat 1080 tactgaacag atcattgtaa acaatcaaga aatctttctc ttcttccctt ttcaatggtt 1140 tcttgttaaa ggcaaaattc agaaaaatct ttcaagctga agtcctcgta tttggttgga 1200 aatgttgtcc tgttatatat aatctctctg tatatatttg attaggcaca agaagggtta 1260 ttaaatattc aacaagtcct catcactatc atcatgaaac gatgctgtat ttgtagagtt 1320 ctgtgcctga tgctggcctg gctttgctat tgcttttgtt tcctttcctc cattcagtaa 1380 ataagatttg tcatcactgc caaaattgtg tggcttcttt tgtgggtgct tgctcttgtc 1440 tagtcctctt cctgtttgaa tctttacatc tggaatggtt aacacttcat cctcactgtc 1500 caggtcatcc acatggagag aggtaagggc ttcagatgta acagacttgg tagcaatgtg 1560 accattctcc tgtcctcctt tggctgttct tggatttggt gctgcaactt cctccataag 1620 ccactctgtc tcattctcat tagcttcttc ttcactgctt atctttgtgt atttgtaaga 1680 aacaccagat gatcttctgc agcagtttgt tatcttgttt attacaattt ccctcctctc 1740 ttttttgtag aacagcaaga ttatgagaca cgcagtgaga acaaccagca ggacactaag 1800 cacagcacca acagcctggc ttctccttga aagaccttta tgtatttggg tctcctcatc 1860 tgtctgctgc tgattgtttc ctggatcatt ggttgatatt aatggacaca cagcagatgt 1920 gtaccaggta aataaatact ggcaatctgc tgtctcgtga aggaattcag ggatgccttc 1980 cttcgcttct ggattgcagt ggaagaaaat ggttgaagac acaaactttg ttttatcttt 2040 accacatctg gagtcagatg aaaatatgac atccaaatca tcatcatcaa cgtagtactt 2100 ggcatttctg gcagaaccaa ctctgcgaac gcgccgttca ttggttttca cctggcagat 2160 gttggctcca aagcattctg gggaacttga gtttgttata ccagaaagtt gaatttgata 2220 cacatattta tcaccatttg tccgtacatc accagaagct gtgtacaact tggaataaac 2280 atctcctaat gaaaagtttt tcccagttgc aggattaatg actgttccat tcaccacctc 2340 tacctcctgc tgcttcacag cacaagctgc acgtgtgtcc cacgtgatgt agtaagcaca 2400 gttttcttca tcaaacctct gcagcatggg catgccaact gttcttgcac atttcagttc 2460 tataattgtt gttactttct tatttttcct acattcttgc ccactggaat aactaatata 2520 cactgtatca cctgtcacat tcagcttctg cgtatgaaca agtccaagaa cttggacatc 2580 tccattgtag cttttcctgc aaatactggc tctttcagga cagcccgtgg gtccctcatg 2640 taccctctga cagaggttca catagtacga gttcccattg tggaaaaaga tccatgatcc 2700 tgtcagggaa gagagcattc tcaagtcata tgttctgtgt ttttggacaa acttgcactc 2760 cattttcttg ggaggacaaa cagcttgagt cttccattca aatgtcacag cacaaccaag 2820 agtctcactg agaaggtatg ggctcccaac accagcattt tcatcacatg taaagataat 2880 ggtagattcc ctttttgcag ttgtgctact acagaatccc cacttttcat ctccctggta 2940 gttttcagtt gtagcacacc atggcttatt cctcccttct gtaatacatt cctcataggt 3000 cttccctttg tacttgaagg ggaacacaca gagctctccc ttgtcagtca ctggagggca 3060 ccgatcacct cctgtgtatt gcaagatgac tgtctcatcc tggtggctat agtccattct 3120 catttccttt atgtttccaa aggatgacac accactttta gatgtcagac acactgcccc 3180 atctctgcat tttccctggg gcaagcccac gctgcacaca ccaatgtggt aattgttgga 3240 gccagaaaat acctcaaatg atcttccaga aaggctggtc aggttaaatg tatagtgtag 3300 ctgctcatca atcacagagc agcccaaagt tttcacttta tcaggacaca caagtggagt 3360 ttcccactca aacacaaatg tgcagtcaac tttccttatc atctttggct tacccagacc 3420 agttccttgg ccacagtgaa atacaataat agaagtatag ttcaatccat tgtttatatg 3480 acaaggagta gtgctgttgt aagtgatgta aacttcattt gctgccttat taaactgggg 3540 aggttcagta acacgaccaa tatctattgg tgatgcatta acaggaacca tgcaaacagc 3600 tgatccaggc gggcaattga catctttgat aggattgaga ggctcacaga tgttgatgta 3660 gaagtctggg gaaacatccg taatatcttc atccacaaat gcctcataat agccagtgcg 3720 atggatcaga ggagacaggt caataatgga actgccattc atcactgagc acttc 3775 // ID JV172672; SV 1; linear; mRNA; TSA; VRT; 795 BP. XX AC JV172672; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15490.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-795 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-795 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; 333d8c37810f12ecc05500de637a008c. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..795 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 795 BP; 228 A; 175 C; 171 G; 221 T; 0 other; actggtgaca ctttttaatt tcttttggtc agattttttt gaagtaaaac caacagagta 60 agacagaact agaggacagg cagtcatatt tacaggcact caaaactaag agtgtaaaag 120 cagagctcag tggtgaaaga agcacagaag catacaaaga aagggatttt tggtaattat 180 tagtatttta ttatattatc ttagctatta aaagaatctg ttgcattttt tgctgcccaa 240 ttccaactca ccagctccca ctcaaaacga cttgtgatac aaaaagcaac attttttctg 300 tttgtagaca acaaaaccac ctgctttaat ttccccaaac cttactgaag agtcacagca 360 cagttaacac taatgctcta tcttttacca ttaaataaaa aataaaacag ggaaaataaa 420 acaggcaaag agaataaacc agactgagtc agtgtaatca ttcagttgga ttctggatga 480 caatcaggaa atagtcttta tctggagcaa ccatgatttc gtttttcttg gagcggatgc 540 gcaggaaggt gaggtcgttc tgggggtcga tgtcccgcac ggtgctccgg gccttcatga 600 tgaagctgtg catgagcccg gcgtactgga tggtggtggc gttgtctatg gtgctcttga 660 tgggaatacc ttctgaatta accacgatga ttccctgcac tcccttctgg ctctggattc 720 gcttcagtgt ttcctccacc tcagccatga tggagccgcc gccgcctccg ccccgtatcg 780 gccccggcgc tgctc 795 // ID JV172673; SV 1; linear; mRNA; TSA; VRT; 2329 BP. XX AC JV172673; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15491.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-2329 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-2329 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; 8acbb96c8aef2b68dca6732f716e0c52. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..2329 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 2329 BP; 634 A; 531 C; 420 G; 744 T; 0 other; aggggagcta ttttctagat ctgaaggcca aagtgaaatc ccagttgttt caatgcacac 60 atgaattttc ttatctaatt cactgtgacc agttcagcat gaaaaatact tagcattttt 120 gtttatgaaa taattcacaa gcaacatccc actgtgctct aaggcatctt tacctgaaaa 180 atttagaatg cattattctt gtcagtcaaa atattttgag tcattctggt cttcccttca 240 taaactttgg aatatttcta accaaaccaa tagtgaaata catatttcac catcagcttg 300 agacacctgg aacagcagtt tcatttacta caattgccac aaaatagata ttatttttgt 360 gctctgacta gtcaaaaata tttacagtaa tgtcatgaaa aactgagagt tcagatgagt 420 atcgtcagaa acttaattgc tactgaattc cttcagataa agcttcataa agtgctgaaa 480 aaaaaagcaa tttaataggt ggccctccag tgcttttaac tacaggtcta tgcacttgca 540 gaaaaaaaaa ttaaattaca attaaagtaa gttttaagtt tggaaaacat gaataatcca 600 aatcaaatgc tgttcatttt tcactatgtg gctcattaac cacagaaact caagagtttc 660 actgggctta ttgttggtat acatacagat ggatctatgc cactaatttt tagcagataa 720 taaataccta tcttgacaat ttagaacaaa acctggagta tttagagata aagtagccag 780 tattctatct cttgatgaac agagacattc tgtattttaa aagaagtctt gcataagcca 840 tgctccaaga actcagacat ggtcagcatt aaaaattctt tagtaccctt gagaactctc 900 agtcccttcc taccctcttc ttactcctca gaatcttgaa ttttttgaag atcaatgtca 960 tctaaggcag tttcattctc cagtggactt tcaggttgca gggctagtgc ttccatctct 1020 ttggtaagtt caggttcttc tgttccatca gtaggatgat ttggatcctc gttttttgta 1080 ggatctggac caggatctga ctgttgttca cctgcagaac taccctctac ttgttgcatt 1140 tcatctttct tttgcttctt ttcttgtttc cttttctcct tggcagcttc tagttcttgt 1200 ttctcatgaa tttccttcag ggtcttgcag acctttttgt gggtaaacca gtgtattttc 1260 tggcagttct ggtcacagta cataaccatt ttacaaactg agcatctttt gtctgctccc 1320 tttcccccac aggttgtaca gaattcagca tccacaaaac ccacttggcc agtaatcgct 1380 tgtgtaagca cagaaaaagc tgtggggtca gagcctattt caacaggagc aatacttctc 1440 acaagctgct ggagcaacgt ggcttcacag taaggaaact tccggatact ttctcgaatt 1500 agcttctctt gatacacagg gaaaccatct ttatctctcc ccttcaagag gcttttgata 1560 aacccatcta atttatcctc tcgctctttt aaaaatgtga tacatttctg gaagatgcaa 1620 ctgatatagt gcattttcat agcaagaact tcattcatgt ctttctgctt catgcatttc 1680 tcacatatga gatccagaac cctgtaacat ttctgcagtg cttctacttc ggccaacaga 1740 gggttctctt tcaccagcaa cacgatctta acaggatgca tgttggtagt agtaataatt 1800 ttatgcagag gcccagctaa ttttactggc agttttggtt ctttgtctaa gccttgtggt 1860 ttagtgtagt agtccagcct ttcacgtgga aagaagttgt tgatgacagt cacacagtca 1920 tgttgaccca caaaagcagc catctgagca gctgtccttc ccacagagtt gacaacatca 1980 gtttctgctc cagcctctaa catcatccag gtgatttctt tgtttcctga aagtccagca 2040 aacatcaagg cggtgtatcc atgctcatgt tcattgcagt ttacatcagc tccgtgtctc 2100 aacagcaacc tgcacatgtc caccttccct ttgtaggctg cgtgcatcag aggggtcatg 2160 ccatgctcat ccaggcaatt gacacggaca ttcttgctcc ccagtagcct tccagcctcc 2220 tcagtgtttc ctgtggcgat cactgccagc aagtccttct cctccgcgct caggtcacct 2280 ttcctggggg gagccatcgc gacccccgcg cagggtaagg cgggatcag 2329 // ID JV172674; SV 1; linear; mRNA; TSA; VRT; 556 BP. XX AC JV172674; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15492.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-556 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-556 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; 93ea6631f2b64791ba8eb4307abe981a. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..556 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 556 BP; 196 A; 94 C; 100 G; 166 T; 0 other; agcttatgat attttaaatt cttcaagatc aaagaatgca ttgaaagctt gcattctgcc 60 atgataagag aatgggaacc agctatagat tcaaaattgg aagtcaaaaa cccattttta 120 agctctagta tgttagaacc ctcaccacta tcactggaaa acagatatac agagctataa 180 ataacagata tacagaacta taaataaatg gtatgattgc attccattct cttctgtggc 240 aggaagccag ctcacactat ctgaagagct gtaccaatat gtctcagttc tatttctgat 300 ttgtaaattt aaaaataaaa tgttgcccct agcaactctc ttttggaaag gtaaatatag 360 tgtaagaata ttgtataaat tcttctctct ttctctaatg tataagaaaa agtcttagtg 420 gaatgagatc ttagcttgta tgagccaagt gtgaactagg acaaggcttt ccagaagggc 480 tcatgggtgc tacttattga ggctggatca ttctaaactg aggattaatg acaggaacaa 540 aacccaaaac ataagt 556 // ID JV172675; SV 1; linear; mRNA; TSA; VRT; 645 BP. XX AC JV172675; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15493.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-645 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-645 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; 7a78212c576de31ff2fdccfe9c5d2d51. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..645 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 645 BP; 232 A; 116 C; 82 G; 215 T; 0 other; ttcagcagac attttatggt gtcgtaaaac atataaagtt tagcgacttc aacttttaac 60 tgaaagaatc aaatttaaaa atttaaaaaa attagaacta atgtgaattg ctttttatca 120 tagctatata tattacacat ccatacatat aatatcacat atatatgctt gtatttgggc 180 aataaccctt taactctaca acagacagtt ctctaaaata ttaccttgtt tttaaacaat 240 ctggtttcca tgtatccatc tgaaacccta aggctagcct tatttcacat acacaataat 300 cttcatagtc taatagttct gtaaataaac caagcattta tcaccaaaaa gttctgtaca 360 ttgtaaggta tactgtatga agaaataccg tcagctctgt gaaccgttct ctgtaagtca 420 ggaatctaaa tctccatttt tggtgacgaa atagaaattc tagtccttta tgcactcaaa 480 gttaaaaaaa aaaggtatac attacaacag gtatcctctc tgctacctta aaatgctact 540 gtcctttcca agttcttctg aattgtgatt atcacatatg gtaaatgaaa atgaagtcac 600 tacatagatc atcttcagta taaagcacaa gtttaattga aactg 645 // ID JV172676; SV 1; linear; mRNA; TSA; VRT; 2994 BP. XX AC JV172676; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15494.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-2994 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-2994 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; a3ddc8fd06348b53d699fad5e43ef6cf. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..2994 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 2994 BP; 745 A; 759 C; 658 G; 832 T; 0 other; ctgaggaatg tcagctctgt gtcaagagca ctggtctcag ccactacata tttccctcat 60 cgtctttcat tttagccctg ttgttgtctt ttaattttct tttcctctgt ataaaacaaa 120 gccagcaaag ggccagagaa acagtcagag tcaaaccttt agaggcatag aagaggtgca 180 ggcaggagtc ccattatttg ttaataggat ttgtgcacat acctcccatg gaccacttag 240 gaaatttgct cccaagcatc tcggtggtaa tttcaattag agtcagcatt tcatttcagc 300 agatggactg caaactggtg gctactcaaa cactaacgag taacactcga taattcccct 360 ctcttaaact ctgattatgc tttctctttt ttatgggcag aatgaatgct gtccctaagc 420 caaaacttaa tttgattttt tgctgtgcct ctctgtgcta gcaaacccca cccgtgtgcc 480 tgtatacagg cccagtgggt aaattagggg tatttttgca gatctgtcac acatttctac 540 catgcttctt attcagaaag atgccaaaga actagaagta catctgcctt cccctgaaat 600 gcagccacct ctggggtgga atgtggcagc aaatgttaat atgggaacac aaacactaaa 660 ccctatgtga aaattacaaa ggaagtaaag aacacagctc acgcagtcta aggctaccca 720 gaaattagct aaaagtgtac acgttttctt ttttaatgaa tgcatttgaa atgattgcct 780 ggtttgcagc actccactaa ggaacatctc atttggcatt gaatcccact gcacattctc 840 acacagatta acagtgatgg taaattttcc gatttcaaga agaagcagta ctaactcata 900 ggcaagatgc acaaaaccag aacacagtat ttcttttttc ttatggaaaa tgtcctttct 960 ttaaatagca tttacaaact acgtcgaggg tggcctggct ggctcgtggt gccttcggtt 1020 tcgctttttt ttcatctcct gcacatgctt ccacttggca ccacctttgt tccgctgccg 1080 ccgcttctcg cggtgccaca tctgttcaca gtactcatcc aggctaaagc tagggctgct 1140 gaccagctgg atgtagtcct tgtacctcag ccgggactcc gtcagcaaat ccctcacccg 1200 gccctcctcg tcctcagtct tctgggtgct ctccatctgt ccattctcga tgacgttcaa 1260 gttcagcttc acgatggtgt gcacgaaggt gtgctcctgg gctttgcaga aataggctcc 1320 tgcatccctc ctctgcaagc tgcggatcag cagcccatgc tctgttttaa tgatcctttc 1380 atcagccttc agctcttctc gatgttcttc tccagagcgt tgaacatacc acctaataga 1440 ggcttgctgg gacttaggag tacattccag aaaagtggaa ttaaattcaa tgccaaaaat 1500 caccttttca tcagcagttt catgactaat gctgtcttcc acatcccagc actgtgcaac 1560 tgggtctcca tacttgacat cctgccttct ggctcgcctt ttagaagtgg gggcatatct 1620 ggaacaagag tttccatccc aggcacagta tgggtctctg gcaaggcagc agtctgcaca 1680 agccttccca tacgtgtgac atctgtgcag agagagctga accaatccat ctctggaacc 1740 aatgtacaat tgttgctgtt tctgagaaat ctccatggtc gagataactg aaggatgctt 1800 gaatatctgc agctcttcca ggaccacctc ctccttggtc cacttctcct ttgtgatact 1860 cacaaccttc aggactgtgc ctacatctgt ccctaggaaa atgacatcgt actggccatc 1920 ctctgccatg acgtggtcca ccacgatctg cgtgaggcga tagtccacgt tgatgcgcgt 1980 gaacacgggc gcgcccgtca ccgggtacac ggccttgtgc atcagcgggt gccgccggat 2040 gaagctgatc acctcgtcag ggaagtccct ggtagacttt atgagcggat cgtaggtttt 2100 gctgggacat gtgccaggcc tggggtaggg gatgcggccc tcgtactgca cccagcggtg 2160 atccgcgctc tccttgtgcg cgtaggggcc gttgaacacg gccctgatct cggccatgct 2220 gtacacacac actgcagagc ccttgaacac cgagcttgtt gtagtgaaga ctccataaac 2280 aagagggttc ctctcatctc ttgtagaaag taagaatata tcctgcagct catcaaaatg 2340 tgtgtctgtc ccttcaggac caggtatgga acacacaagc ctggctttca gaaaagttgt 2400 ccacttgttt atcaggcttc tttggcctcc catatcattc ttacaaactc tcccaactct 2460 ggagaggatt gtcttgtcag atgtgccact atcttgtgat atttctcgaa aaaaagaagt 2520 agattttatc atcatctggg ttataggtat ctgggatagg aaaagttcca atgaatttgg 2580 ctccagtaag ccagtaatgt tcagaaatgt cagttctgat gtaatggtgg tcgtgagaag 2640 ggcccagaga acgtgtcaga gcagtgtctt tgccaaggaa atcagaagct gttccagcat 2700 aaagatactc atctgccatc actgaagcaa atggctgctg gggatcgaag gggcacttca 2760 acctgccaga ctccaggttc tgggtatcca aacggaacac catctcctct ttgtgagttc 2820 caagttcaat gtatccacag agaggatgaa acgctcctgt gccacagaca taaacatgtg 2880 tccggttgta cggctgaaga acgcggataa aattggcaca ttctgtctgg gcacctttcc 2940 cagctaattt gcataattct accttctctt ttgctgcagg ccagtaaatc tttt 2994 // ID JV172677; SV 1; linear; mRNA; TSA; VRT; 1991 BP. XX AC JV172677; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15495.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-1991 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-1991 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; a85c05c93c415f4edafd52a43de36e28. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..1991 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 1991 BP; 555 A; 425 C; 527 G; 484 T; 0 other; ggaaggatgg tctataacat tgaatcaatt acgggacgcg gtttgtgaga ccattacagt 60 cggatcggga gagagggcga gcgagaggga aagagcgcgg ctgagcaggg aaagtcacaa 120 aagacgtgga catattttgg atgttttaca atctgcagga ttggggctgc gggttgtaaa 180 ggagaagctg ttagcagcta tgggtactta cccacaggcg ttcctgatcc tgggatgttt 240 tctcacagga ccattcctaa cattttgcca gcttcctctg ccaactattg ttcccaatag 300 gaatgaaatg gtggtacagc tctattccaa tttcacactc aaatgctctg gggacagcga 360 agtgagctgg cagtacccag tgaccgaggg gaaccacagg atagacatca gacacgaaga 420 gaacaacagc ggcctcttcg tgacagtgct cgaggtgggg aacgcctcgg ccgcgcacac 480 gggcctgtat gtctgctact acaaccacac acaggtggag gacggcgacg tggaaggcaa 540 ggacatctac atctatgtgc ctgacccaga catgcctttt gttccttcta tacccgaaga 600 ccagttcatc ctggtagaag aaggtgatcc tgcagttatc ccttgtcgga caagcgaccc 660 agaggcccaa gtgactttag ttaacagctt agacaagcct gtgcatgctt tatatgacac 720 caaacaaggc ttcattggga attttcctgc gggctcatac acgtgcaaaa caatggttaa 780 aggcgtggag ttcaagtctg atgagttcct catctatatt ataagagcta cttcacagct 840 gcctgttgaa attgaagctc ttaaaactgt ctacaaaaca ggcgagacca tcgtagtaac 900 ttgtgtggtc tttgacaatg aggtggtgaa tttacagtgg aattaccctg ggaaagtgaa 960 agaaaaaggt ctgataaagc tcgatgatat caaagtgcca tcacagaagc tggtttacac 1020 cttgaccatt cctgaggcat cggtgaaaga cacaggggat tatgaatgta ctgctcggca 1080 tgcaaccaag gaggttaagg aaaataagaa agtagccatt acagttcatg acaaaggctt 1140 tgttcacctg gagcctcagt tcagccctct ggaagctgtc aacctgcatg aagtcaaaaa 1200 ctttgttgtt gatgtgcagg cttacccagc accaaaaatg tactggttga aggataacgt 1260 gactctgatt gaaaatctta cagagattgt tactacttca ggaagggtcc aggaaacaag 1320 gtttcagagt gttttaaaat tgatacgggc caaggaggaa gacagtggat actatacttt 1380 ggttgctgaa aatgaagatg agattaaaag atacaccttc tcattgctga tacaagttcc 1440 agctctgatc tcagccctcg tggatgatca ccatggctct gcaggtggcc agactgtgag 1500 atgcttggca gaggggaccc cacttcccga tgtggaatgg ctggtttgca aggacattaa 1560 aaagtgcaac aatgacacct catggaccct tttgactaac aatatctctg atatacacat 1620 ggaagcccac ctggatgaga aaaatatggt ggaaagccgg gtgaccttcc agaaggtgga 1680 ggaaaccctg gctgtgcgat gtgtggcaag gaacgacctc ggtgccgtta ctcgagagct 1740 gaagcttgtg gctcccacct tgagatcaga gctaactgtg gctgctgctg tcttagtgct 1800 gttggtgatt gtgataattt cactgattgt cctggtcatc atatggaaac agaagcccag 1860 gtatgagatc agatggagag tcattgagtc catcagccct gatggccacg agtacattta 1920 tgtggaccca atgcaactgc cttatgactc cagatgggag tttcctcgag atgggttagt 1980 gctcggtcgg a 1991 // ID JV172678; SV 1; linear; mRNA; TSA; VRT; 1152 BP. XX AC JV172678; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15496.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-1152 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-1152 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; 0722fd89a168a549c67eb6a4fc1ddd93. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..1152 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 1152 BP; 217 A; 373 C; 379 G; 183 T; 0 other; gacagcggcc acaggggctc tccggggact ccgctgctgc cggggaccat ggccaagcgg 60 gtggcggtgc tgctggcggg ctgcggcgtg ttcgacggca gcgagatcca cgaggcgtcc 120 gcggtgctgg tgcatctcag ccgggagggg gctcaggctg aggtttatgc tcccaacatc 180 ccccagatgc acgtggtgga ccacgtgaag gggcagccca cggcggagca gcgcaatgtc 240 ctggtggaaa gcgccaggat agccagaggc aacatcaagg acctggccac gctggatgtc 300 aaggggctgg acgccctcat catcccaggt ggcttcgggg tggcaaaaaa cctgagcact 360 tgggccacgc agggcaagaa ctgcagcgtc tccaaagagg tggaggctgt gctgagggca 420 ttccatgctg cccacaaacc catcgggctg tgctgcatct cccccgtgct ggcagccaaa 480 atcttcccgg gctgtgaggt caccgtgggc cacgacacgg agtgtgagca gtggccttat 540 gccaagactg ccgaggccat gaaggagctg ggctgcagac acgtcaacag ccaggtcacc 600 gaggcccacg tggacgccag gaaccgcctg gtgagcacca gcgccttcat gtgcaacgcc 660 cccatccacc aggtgcacga cggcatcggc agcatggtca gggaggtgct gcggctggcc 720 tgagctcccg caggcacgca gcccctcccc gcggagcctg tccttccctg acacagccac 780 agctaaaggg acactctggc tctgccccag agctctgagg gctgctgagg agggacaatc 840 ctggaggtgg cgtgctctgc caaggacacg tcgctccctg gcaggagctg ggatggagct 900 gccgtgggat cgtgggatgg gagggacctc aaagctcatc ttgtgccagg ctcctcccat 960 gggcagggac cccttcccct gtcccaggct gctccatctg gccttggaca cttccaggga 1020 tccaggggca gccacagctt ctctgggccc agggaggaat tccatcccaa aatcccaccc 1080 atccctgcca caggctcgcc cagggctcag ggtcagctgc tccccaaccc ctcctcaggc 1140 aatgaattgt gg 1152 // ID JV172679; SV 1; linear; mRNA; TSA; VRT; 616 BP. XX AC JV172679; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15497.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-616 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-616 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; bf8ad4098932840ac3297fdcb952e694. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..616 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 616 BP; 210 A; 105 C; 113 G; 188 T; 0 other; aaacaaaatc acttttgaaa ccataatctg taaacataaa tgcacacaaa gctgtctatg 60 gtataatcca aattattgtt atttaagtgg gagggccagt gaggatgttt tcacaagcaa 120 gacacagata ttgtttgctt gcataaacct cacacagtac agtcatggcc ctcatatctg 180 ttatcacatt tcatttagtg acagaaatgg gtacatattt gtaacaaaga gatttggaag 240 ccctggggtt ttttgttaat ttataaatca tgttacatga ggtcagaatt cctcaaacat 300 ataacattca tacaactaaa cagattcata tgtggtactt tgatgacctg attaagtgcc 360 agagctcaca tacaaacaca gacacaacca aaatgaagat aaggtagatt cttttgtcaa 420 agatgtattt gagattaatg gcaagctgac agcctgaatg ggttccactg cacagaggca 480 attactgcag taggtaaagc aagtgataaa gatttattta gtacaaggct gatattcatt 540 aatctcttta aaccccacgt taatgttgtt taaagtactg tagttcttct ctggaaaggt 600 ctgttgaatc tatgac 616 // ID JV172680; SV 1; linear; mRNA; TSA; VRT; 453 BP. XX AC JV172680; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15498.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-453 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-453 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; 0ec75f2c589bb7f8948a6b29e760fcb7. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..453 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 453 BP; 76 A; 156 C; 142 G; 79 T; 0 other; ccggggcgta ggcggggtcc agcccatcga tatcgaagct gatgtacatc ggcctctccc 60 ccatctgcgc cctcacctcc ctcatcagcg gctccaggga cttcatccag cactgctcag 120 ctgggaccac gcggaaaccc tgttcccggc agtacatgtg cggatcgggg tcataggagg 180 agcctcggat gccgatctgc accacgcggc cgcagtccag cagcccttcc tccgcacagc 240 gccggaacga gctcccgtgg tagatccgct gccccagggc cgtgtccccg gtgtccgtgt 300 gggcatccac gtgcaccagc cccacgggac cgtgctttgc agccagggcc tgcaggattg 360 ggtatgttat ggtgtgatct ccacccaagg tgaggggcac acagccggag gccacgatct 420 cctggtagga gtcccggatg aggcggcagc tgt 453 // ID JV172681; SV 1; linear; mRNA; TSA; VRT; 1250 BP. XX AC JV172681; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15499.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-1250 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-1250 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; ebcea9dca76cf025e9ee50fcdbd0af4e. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..1250 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 1250 BP; 451 A; 249 C; 226 G; 324 T; 0 other; caatattgcc aggtttaagg ctgttacatc aacaacatat tggcaagagg aagacaaaag 60 aaacaaaaca aaaccataag ctgcttaact cctacctgga ggttaaaaaa ggagacaaca 120 cactgacaag aaacatgcag gtgaatgctt aaggcaacaa cagaggggct ctgtacacac 180 taaaaggtta agagcagcaa tgtgtcatgc acatgagacg agtatgggaa gcaaggaagt 240 catcttgcca ggaaatatgt atttctttta aatctaagac atcttttcaa gctaaaaaaa 300 aaagtcctgc aataaaaccg atgcaaaatg ctttcataca taaaggtata agttctttgc 360 agaacaagtt gataaaatct aaaacggatg ctgaaaaaat gtttgttacc taaaacctac 420 tcaggagaaa caaagagcag ttttaaagta gcacttggat catttgtctc taggttctga 480 aaataaactt ttaaaacaag gaatgatttc actaaatgat tcatcaggag tcaactaagc 540 ctaaagaaat cagtaggagt gcttacagga gaccatcatt acttaaaatc tgaaaatata 600 acttcaagat gtaatttaat atgagggaac attttaatag ggacagaact gcccagcctg 660 ggggaaaaaa accaaaaacc caaccataaa agtcacttat taatcttaca taaattaccc 720 tataagagct catgtctcag tcccactccc aacaacatga gtgaacagga ctcttctttc 780 aacaggcctg atttgatgcc agtgaccaaa caagcaggca tttgcctttt atatcctaca 840 agacaaataa caaacactag actagagttg ccttagtccc agggaaggaa gaggtaagaa 900 attctgtaac tctttccaat cttccaacat gacacagtct aaccacgacc tgcctcgtct 960 gaattcccca acctgaacgg gcgagaaagc cactccgtga aactaaaagg aataacatag 1020 tgcaatttta gtacagtttt aaacatgagt cacttccttg gtagcagtgt gaacaatcaa 1080 aaaatataca caaaaaagag gtgtgctcga aggtacatga agttgttgtc attattttaa 1140 aggtattggc atagcagaga agtccatttt agtaactcgc tttggttgac ttcttcttct 1200 tcagttcctc tctctgcttc tgcttcctcc tcttgctgcc ttctttgtat 1250 // ID JV172682; SV 1; linear; mRNA; TSA; VRT; 2448 BP. XX AC JV172682; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15500.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-2448 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-2448 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; dcb1d41988e2e5868c072ed9facc3a84. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..2448 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 2448 BP; 666 A; 611 C; 589 G; 582 T; 0 other; gtacaagttc ccagtacaag catctgctcc ctggctcagg gttaatgcaa atacaaaagc 60 acagacttca gcagctcttt aatgtgacct gagctgccac ctcccaagac aggaggtctc 120 ccgaggcagc tgctgtgcac aggcaattcc ccatggagaa ggggaagcca catgcccagc 180 tccaagtaca ggccaacagc aactcgagcc tgaagcaaat gctcgggttg gtttctttta 240 gtaactttat gctgcaggag tcaggcacag aggtacaagg tttgtacaga ccaccaacgt 300 ggtacacagc tcagccagag gctctccctg tctacagaag gaaatcaaga gatctgatgc 360 ctctgaacat atacaccatt ataaagcctg gtcagaagca ccagtttcct tctgcagctt 420 tggggaagtg gcaccatccc tctaggaatc acaagactta actcccagtg tcagccaaca 480 ccaagtgact gagtgggtgt ttcaagggaa ggggtgggaa cctctgatga acagcattat 540 tattttttta gacatgattt aatatgcaag gatggctata cctttaaaat gtttgtttct 600 tcctctttgg tgaacttgga ttacaagcaa atgctgtaac ctttgggtca gttttcttgg 660 aatttgcctt catatcatca ctggaagtgt ttacaagaaa tagacaggat ggaatggcag 720 tgtgtgaggt atccttgggg aaacatcagg gagtggcagt gcattcagtt tggtttaaca 780 cagctagctg catcaggcaa acagagattg ggaaactaag cccaaatgag aaagccttga 840 ggaaagagga gagtgtaaaa ggtgacctgt aacagacaca gggacaaagc tgaagctcag 900 ctgccagggt gggaacatgg agaaacaacc actggcagca ctcggtgtct aaggaacagc 960 cacagcctca ccatagacac acagtgaaaa cagaaggcaa tccttttcct tgagctcttt 1020 cttggcacca gggaaacctg cagatgcttt gggagtctgg taatttctgt ggtctctacc 1080 ttacactgca tcttccatta gccaacagca tatgcacgga cagcgtggat ttccacttaa 1140 gccacagcaa tttgtttctg accctttgtc tgcatggaaa ggagggtgct gaagatgatg 1200 ccaataagac agtacaagag cattttacat ctccaaacat tcttacatgt aaagcctttt 1260 ccccaaaatt atgtttcccc ttaagctatt ggtttcatca ttctgtatat aatatatgtt 1320 cctttaattt ctacacacac cacactgggc tctaacttaa tgggatatgg gactgaattg 1380 ttaccatcta ttaaaaaaaa aaaaacaacc aactaaaaaa agcaccaaca tccgtctata 1440 aaaacagtat cattttccct tttactccca aatgctaaac ttaacccagg cttggaggtt 1500 tcatctttcc agtggcaata cctatgaatc taggctagcc ttcctccacg ggctgggaga 1560 gaaaggagaa gttacgtcca gtagcaaaga ggattacaaa aatatacaca tttttgggag 1620 aagaggaagg cagaacctag agcctggact ctgctcagga cagtggcatt gtagtgtcct 1680 ctccaaaatg ctttcactac cagtgctggt ggctcctctt ctttgtttcc ttatacataa 1740 tccttccctg tggaggaggc gttttttggg tagcctcggg tggggggata tgaagtttct 1800 ctccgtggac aggagcagca gaggaaggat ccccccagta tggccagaga tgaagctgcc 1860 cagccaataa agagagctga cccaaactca aatctggtgt tgacaggggt gaaaggatca 1920 taaaaggccc gagccactct gttgccatac cacgaggtgg ccaccagtgc tgccagacct 1980 gaaatgatga agatcacccc accgaagaca gccatcctca tcttcttcac ctggtcatct 2040 tccatgcact tcatgcattt catgcctgtc acagcaacaa acattccaac aagccccagg 2100 agtattgaag ccaccatcaa agcccttgtg gcctgcagac tgccttccag cttgagcagc 2160 gagtcgtaca ccttgcactg gatctgcccc gtgctctgca tggcgcacga catccacagc 2220 ccctcgtaga gcgcctgagc cgtgacgatg ttgtcccccg cgtaggatgc catcttccac 2280 tggggcatgg cggtgctgat gatgatgccg atccagccga ggaaggccat gacgaagccc 2340 aggagctgca gccctccgct ggccatgtct gcgggctgga gggggttgag gggacggaca 2400 gacggagggc gcgcgcctct ctgccccgcg cgctgcgctg ctgctctc 2448 // ID JV172683; SV 1; linear; mRNA; TSA; VRT; 1470 BP. XX AC JV172683; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15501.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-1470 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-1470 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; 8ed0b6dbf63a68b6ac8870ac738f6428. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..1470 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 1470 BP; 431 A; 243 C; 302 G; 494 T; 0 other; ggctccggac tgtgcagccc tgcgaggcag tgctcgtgag gaggacggta ggattttgta 60 gttcattatt gctctctgta gacccagcac tttaggagtt gtatgctgaa tttgtcaatg 120 acctggtgca aactttctgt gggttggact agttgtcagg gaaaaagacg ggtgcgggca 180 ggagaaattc tttccattct gaaacatttt acacaagggc ttgggcaatg attgctttta 240 tttaatgcaa ttaaataaaa ggaataaaaa atgggtaaat cttcaaaagc aaacttattt 300 ggagtagacc atttcatatg ctttctcttt gcttttttaa taggctgcta tggaaatctg 360 tggtaaaacc agagttccta gaaaactact gtgctgtgta tgtaaacatg aaaaatagaa 420 acagctgttg atactttaac aagagtttgc tgcattctga ctgtagagga gtcattgttc 480 atgaaagtga tgagaatcaa atctcttaga aatcaaaata gaaataaaat tttagaaatc 540 aaaccaatgt tttagaaaca taagagcaaa atcctacttt tctgactaag aacttggaaa 600 agccatgtaa aagctgtatc atctggagtt cttcctgcta aatctttcca cagaatttta 660 caaggatgag gctgtttttc tctctgatgt ttccgtattc agcagatttt ccactgcaaa 720 gtaaatgact atattagatt tcctgcctat ttttcttact gggtgacatg attgtaattt 780 atatcaagat cctgttactg agcctttgaa agtaaccagg catctaacat gcttcatggt 840 atggttaaat aggcatagaa aaatgctgtc atttgacaca gactgtagtg taaaaatcta 900 gttgtgtaaa aatctaaatc taaaatttaa atatgtttaa taaagcattt tcacaaaata 960 ttaaaaattt tattggccct gtttaagggt gcatcttcca gggattaaga gccaggcaga 1020 aagcaatatt gtggtgattt ttgtgaagca acagttaggg ctttcagtct ggatgtctgt 1080 ctgcttttgc aatcccattg tgatgttggt cgtttcaact gggaatcagt agctttagtc 1140 cttttaatac cacattaaag tggtatttgg attgaatgta tccctcctaa atgtacgtat 1200 tgttgacatg atctctttgc cttttagagt ggcagaacaa agtattgggc aagaccttgt 1260 ctccatcagg gggcctggct gtcttcctag attccagcct ccttttctct tatcggcttt 1320 agtttctttc aaagcagaag aagaatttta tattaagttg gtttcttacc tggtgaagcg 1380 aatttaagca gactaaggtc ttcagctttc cccaagggct gttggctact ttgacttgta 1440 ttaaaatttc attatttctt tactagatgg 1470 // ID JV172684; SV 1; linear; mRNA; TSA; VRT; 508 BP. XX AC JV172684; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15502.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-508 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-508 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; 0aaf48a6ba7414d3a58f47d211334ba3. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..508 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 508 BP; 122 A; 148 C; 127 G; 111 T; 0 other; ggagtccctg agtgcttccc tggaattctc accagcagca agcagcatgt ctgaccagaa 60 cgtccgcaac gctggcttca ctccctctgg gatcacagga ggatcccttg cttcatcact 120 gatgtcccga gaagccagag cctctggggg aggtgtgcct tctggtggcc ccacttctac 180 tctccaggaa atgggtgcca ggggcacaac ccactcatca ggttacacca gcagcgggat 240 ctctggtgga tccagggcct ctgacacaat gtccaaggag gccgcagctc atggaggtgg 300 agttcccagg ggaggcacaa cttccactgt ccagtccatc tccatgggtg gaaaaggagg 360 cagacgctga atagaagaaa aacatccgtc caaacctgca agcagttcat ccttcaccat 420 cagctttggc aatttctccc cttctatgat ctccctgttg tgaaagtcaa agccttccac 480 gtgcacaaat aaagtttctg ttaaaatg 508 // ID JV172685; SV 1; linear; mRNA; TSA; VRT; 473 BP. XX AC JV172685; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15503.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-473 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-473 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; f642cc4f50f37e0f86acdb0034046d24. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..473 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 473 BP; 169 A; 61 C; 81 G; 162 T; 0 other; gggtgaacaa ttcatggtca aaggtatgtg atacaaaaac agggacctgt atagtaatgg 60 ttaattttag atctaaatct tcagtatttt ttgtactgat ttaatgttta aacttaacat 120 tcaactttca tatattaaat gagcagagca tcttatggat ggaagtgcta cgttatatcc 180 aaaaacacca ggtagtaagg gagactgtaa aatttcaaat taagtgtaat tttaaaatca 240 tttaaaggaa tcaagtgtat tttttttata atcgatactg tgactggcaa actataaaag 300 cttaaattat aaaactatta gtgactctac cttttaaact gtatgtacta taaagctgta 360 tttttgtact tacagatgtt acaaaatttc caaggcagga agtgaagggg ggaaaaggta 420 gtctaaaaca ttttcacaga tttcattttt actaagaagg ttatttcctc cac 473 // ID JV172686; SV 1; linear; mRNA; TSA; VRT; 507 BP. XX AC JV172686; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15504.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-507 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-507 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; c97425640a18ff70fbfd221cd35c025f. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..507 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 507 BP; 130 A; 129 C; 91 G; 157 T; 0 other; gagaggagaa gttgaaattt attctcacaa atgactaaca aatgaccaga ggcactcagg 60 ctgcacaagg acacacatgg tcttcagtaa aagtttcatt tttggtataa aacaataact 120 ccatttttaa acaaaaccta caggtaaaga gaaagtatca catcttaaca aaaaggattt 180 attgtgacta aacaaaatgt acaatgtttc ccaaatgaca gagtgttttc aagactctct 240 gaagtctgca ggtccattgg gtaacttgat cacttcatag cctgcagttt gatcaagcta 300 ctttttgcca gacttcttta ttccaccact ggccaggggc ccttttccag cagcttttgc 360 tttcatctcc tcaagtttct tttgctcctc cttctgtttt tgtttgaatg ccagatccgt 420 ctcatccagg tccttcgtct gcttcttcgg ctgcttcagc ggcttcttct tgccgccctc 480 ccggcccgac atggctccgc tcgctcc 507 // ID JV172687; SV 1; linear; mRNA; TSA; VRT; 782 BP. XX AC JV172687; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15505.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-782 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-782 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; 89a8e19a0de9ebff6b0c3b3821bc1696. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..782 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 782 BP; 309 A; 149 C; 193 G; 131 T; 0 other; ggaacgtgca attggaggag aaaaaaaaaa aattttagga aattttgtga ctacaaggaa 60 atggaccggg attcaatgca acccagtgca aaggaccaaa acgggccaaa actaagtttg 120 cagatgctgc aaaagcaggg gaaaaagtca aggaggaaga ctcagcctgg aggggaagat 180 atgagggaca tgctatggat agtcaaaaaa gaaaaaaaaa ttttcgcaac ctcaaagcca 240 tgcaaaggca tggcatgcca tcaagtgcag ggacatgcac caaagattcc cctattggtc 300 cccattgaaa tcgcgggatt ccgtttccct tcccgaaagg aaatgaaatt tcctttcggg 360 aagggaaacg gaatcttgcg accccgaaaa gaaagcctta caaacactct ggaaaggaga 420 taggatcaaa tgaaatgcaa tcaaaaaaat ccggcaaaat cggcagatga agtctcttca 480 aaaaatagtc tgtgaggaag tgagttgcag tgcaaaggac caaaacatgc ccaaacgaag 540 ctcacagaag ttgcaaaagc agggggaaaa agtcgaggag gaagacacaa cttggaggga 600 aaatatcagg gacatggcaa ggatacttaa aaaaaaaaaa aaaaaaaatt gccagagtca 660 agcacataca attgcaggcc atatgccatc aagtgcaggg acatgcacca aagcttgccc 720 aaattgatcc ccgctgaagg ccaaaagaca aaagaaggac ttacaaacgc tttggaatgg 780 gg 782 // ID JV172688; SV 1; linear; mRNA; TSA; VRT; 732 BP. XX AC JV172688; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15506.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-732 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-732 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; ee819299a967692e96ecc878d90b4950. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..732 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 732 BP; 268 A; 168 C; 162 G; 134 T; 0 other; caccagaaag cgaagaggaa aatggggatt gggaagcaaa tagagaagac tctgataatg 60 gagatgttaa ttatgattat gaccatgagc tgtctttgga aatgaagcgc caaaagattc 120 agagagaact catgaaattg gaacaggaaa acatggaaaa acgagaggaa atagtaatta 180 aaaaaagaga tttctccaga ggtggttaga tctaaattat caccatcacc atcaccacga 240 aagtccagca aatctccaaa acgaagatcc agtcccaaat catcatcttc agctggtaaa 300 aaagacaaga aagcatctac tgtctcttca ccacttttgg agcagcagag gagttctaaa 360 agtactcaga gtaaaaagaa aggtcctcgt acccctagcc ctcctcctcc agtacaagag 420 gaaactcccc tgggaaaaaa acacaaggaa aaacataaag caaaagaacg ttcagaagaa 480 aaggcaaggg acgtgaaaga gagagggcgt gactttgaaa ggcacaagga gaaaaaagag 540 aagcagaggg atccgtctga aagctcccgt cgacagaagc gttctcctag tcctgcagat 600 cactctggca gtaattcttc cccttccagg gagtactcac cacctgctgc aaggcgaaag 660 caaacctccc gcgctccagc caaggcagcc actcacaaac ataacttctc accctcgcgc 720 aggtctgctt ct 732 // ID JV172689; SV 1; linear; mRNA; TSA; VRT; 302 BP. XX AC JV172689; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15507.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-302 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-302 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; c9ef8689537cf41c96c5518a3fdf1bde. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..302 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 302 BP; 81 A; 72 C; 64 G; 85 T; 0 other; aaggagtgtg tccatgtggt tccttcctgt ggttccttgg ggtgttgctg aatgtgctcc 60 agtgccagtt tgttgtaagt ctcattgatt tcaaagacat aataaaaagc tgcagcactc 120 gctaacaagt acagccccac gccaatccag cccatcctct ggcggaagtt catcattctc 180 catgctctgc acctgcaaca aaaggtgaca gaaacattca gtacagcttg cagagagagg 240 caacagatga accttggttt agcacaagtt aactttctat aacttttcat tgcacattag 300 tt 302 // ID JV172690; SV 1; linear; mRNA; TSA; VRT; 1119 BP. XX AC JV172690; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15508.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-1119 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-1119 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; d9418fc4fca9aca31d4d137c349e8b60. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..1119 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 1119 BP; 274 A; 287 C; 274 G; 284 T; 0 other; ggtacactga aaaatgaggc tgttttattg atgattagac tgcactggca acaagcatca 60 agctaataca gacagacttc aaccaaagca tgagctttga atcagaagtc gataagtgac 120 atgatgcctt aataaattaa ggaagttaat tcctccccgt tgtcaagtct tcacttgaag 180 ttctttgcaa attcctctcc tttcttaata gagcccttca gctcagacat ggctgcagca 240 accatcttct cttcaaaggg ggagagcttg ccaaggccta ggttcttctc aattcctttt 300 ttcccaagct gcagaggtgt agagaagtag gggacctctg tcacatccga ccgaacaaag 360 gcacattcaa caaccccctg ctttccactc atggcctcca acagggagaa tgcaaatcga 420 gcaccagcat aggccatgga caaggtggca gatcctgctc ctgctttagc ttggacaact 480 tcagtcccag cttcttgaat tcttgctgta agcttctcca gctgatcctg aggaaactcc 540 acttttggtg tgcactgaga gatcagaggg atgatggtct tcccagcatg gccaccaata 600 actggcacag ctactcgagc tggatccaag cccttgagtt cagccacaaa agtattcgct 660 ctgacgatgt ccagcgttgt aacaccaaag attttgttgg ggttgtacac accgtgcttc 720 ttgaagacct ctgaagttat tgggatggtt gaatttactg ggttagaaat gatacagatc 780 atggcttctg gacagtgctt tgcacaggca gttgtcaaag aggcaacaat gctggcattg 840 gtgttgaaca ggtcgtcacg ggtcatacct ggttttcttg ggactcctgc tggaataaca 900 acaacatcac agcccttcag acattctggc aactgctcag gtcccatgta gcctttgacg 960 ctggctttgg tctcgatgtg gctcaggtcg gcggccacgc ccggcgtgtg agcgatgtcg 1020 tagaggctca gcttgctcac cagggggctg ttcttgagca gcagcgacag tggctgcccg 1080 atgccccccg aggcccccag cacggccacc ttggcatgg 1119 // ID JV172691; SV 1; linear; mRNA; TSA; VRT; 714 BP. XX AC JV172691; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15509.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-714 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-714 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; 2ff02ddc68b656a3102b7531ae787741. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..714 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 714 BP; 250 A; 151 C; 116 G; 196 T; 1 other; cctacagtaa aggtaacatg ccnggtttag ggtccctaag ggaaactttc ttcatcttaa 60 cagctggaaa taatgttttg ttggggaaag tacagtattt tgaagcagag atccttccaa 120 tgaaagctct gagaagatgc caggaaaatg aagttaatag taacaccaaa aattttacct 180 tctctacaca cagacacacc ccaacacctt attttcttcc agccagttct acatctcaaa 240 ctgcagatat gcagagggtt tctttcttcc aaaaatgaga tcagaagttg aggtttagct 300 tccattggaa aacaaaaata aacgtgggca tgagtctcat tagacacacc ccacattagc 360 acatcccaac acttaatttc ttgcagaata taactaagtt ggtaatgcac accataagaa 420 cttcagctta acaaataaaa cagtaacact gacaaaatgt tctaccatta aacagaattt 480 cttagccact gaaattgtgg ctaagcttaa tacaaaatat taccaaatat aaactttatt 540 agctaaatac atttctgttc ctcctcctcc aagtcaaatg caagcctgtt tacatgctta 600 gccttggatg tgcacatgaa aataaaaata tatgagtatg agaccctgac tcaaaaccat 660 cacaacgtgc acatgcaggg ctgagtaatt aacctgtgta gtttgtcaag gact 714 // ID JV172692; SV 1; linear; mRNA; TSA; VRT; 2296 BP. XX AC JV172692; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15510.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-2296 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-2296 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; 2ac9f5fc1848e0d352008a7d4b5c7f20. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..2296 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 2296 BP; 621 A; 497 C; 523 G; 655 T; 0 other; tacgtgtaga aacatcagta tatttattaa tttctaaggt gtaaatgata acaagatttc 60 agaagcagaa aatgaatagg gtgctattgc atttagcaca gcaaagtcaa tcatctgact 120 ctgcatgttg ctccccttca ctataggagt tagagaacat agatcaggaa gagggcagtc 180 agaaagtcac agctttggtc ttgggggatt tcaattactc agacattgat taggatgaca 240 attatatgaa aggtgtagag aggaacacac ttgtaaaggt tgaccagggt tgctttcttt 300 agccattgtt gaggtgacta cataatgaga gcttatttag aaacttgtcc taacagttgt 360 gagctctgat aaacagagtt aaggaaacag caagaccttt ctgggtctga aatctgcctt 420 gtggtcagga aacacagcac tgttttccta tcacaactgc caccattcct tccagaaact 480 ccctaccagc tcccttgtgg caaatgacca tatgatttcc aaagatcttt tgtccctcct 540 gcattatgtc agaatatctc taccctgact aaactcctta aaaaatcaca agcatactac 600 tgacagaggc ttacagagac aaatgcatct ctgtctatgt gtgtgtaaac actaagtcat 660 catcataata ctagaagttt ttttcaagca atgctttata ttcctccaaa acaagaggtg 720 gaatatcaat aattaggtga agcatcctca aaaattacca taatggcagt ttaatttacc 780 agtgtggtat ggatgtgaaa tcatcaaatc atagcctttg ccaaataggt cagtagaaat 840 gaaatcagtc agtcagaata ggagccacct ctactactga agagtttacc cactgtacac 900 agagagtgct tcttagtcat cacaacaaac actttccagg agcttcattt aactaagggc 960 tgcttcaagg ccaaggagcc caggtcacat gttcaattaa tcccatataa ttttttaata 1020 cttgaacagt gtgttaattt aaggcttaat gctgccttca gatattcagc ctcaaagcct 1080 cactaacaga gcatgtttat ttcttcactt tggggaaata gaatgtgaaa aggctgatat 1140 tacttctaac tctgctgttt attgagcacc tcggtgccct actttagcca aaggtgattc 1200 ctctgcaatt aaaatggaat ttcctctgtt tccagcctgt cattcatgca gcttctgtga 1260 ctgagcctgt aatgagcagt ttgggcgcag ctagctcatt ttgtgtgcag aaccaagaag 1320 ttccagctct tccccagtac atcagggatg ctgttgtttt tcagctgctg catgtgatgt 1380 ttagtctggg agggaaattt ctacagaagc tagggcaagg tctcagtaac aggtcagatc 1440 tattttggga gattttgaaa gactcaaagc atttgtgagc acaaggatct cctaaaacac 1500 attggcatag ctcagtggtt caactcaaaa ctgagctgtg aggtctgatc tccctctcct 1560 tcaggccaca caggttctgg tgggagagaa tccagccgtc tcctccggcc tgctgcaaga 1620 gagggccagg aaaacctttc tcggtgcatc attcacgctg gagacgggga acaggactgt 1680 tctgccggca gaccctgttt ttctttggct gcctccgccc agggcttctt ggggctgggc 1740 ggaacagggc tgcggctgag tctcctggtg gtgtggggat gccgagaagt tgtagcgctg 1800 ctgatgtgca gggtggaggg aggggacagg acggctccgg cagctcagag gctttggcgt 1860 tttaagcaca acctgagaga actgctgagt tcatcgggag agacttggaa gctcagactt 1920 ggaagttctt cggttctggt ggcgttcttc aggatggctg ggggttgaat tgatgccgct 1980 gggcacataa tctagagtgt aacaaacaaa ggagtagtca tgtaggcttg ctgttgttgg 2040 gatgcttcgt tcatctttct ggcttcttca gctttcttgc tggggctgct aatacatggt 2100 gtgcatataa aactgttcca aactgctgtt taggaacaga tatgcacaca tttactacca 2160 gttttaaatt ctttataata tcaaatgtag ctgtatcaaa tcccagagga actccccttc 2220 ttggtcatgt ctcacgagca tcgcctcaca gcactgcctc cttcttctct gcacagccaa 2280 ctgactccag ctcccc 2296 // ID JV172693; SV 1; linear; mRNA; TSA; VRT; 1921 BP. XX AC JV172693; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15511.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-1921 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-1921 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; c19c1aea94264e4197a6c0293f677fa5. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..1921 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 1921 BP; 447 A; 501 C; 416 G; 557 T; 0 other; gctgaggtct ctatgatgtt tcctgcacac tccatggaca ggatatcaca ctcagcatct 60 ccaatggcat caatgctggg ctccttggac accagagagg ggctgatatt tcgtgctgca 120 ttttgtctgt ttttaatttc ttctaagctc atgtcatcat catcctcatc caaaaatgct 180 ccaacagaaa tggaattgca ggactttttg cttttaccag agggatgtgg agttttgtat 240 ctattgcagg tttcattttc ccctgtttct ggctgagcct tttcgctcat ttcacgatga 300 ctcaggtact cttctaactt tcgcagcccc tcctgggaag acagatcaac aaaacagccc 360 agaaattccc agtattcaac ccacgggaac cccagctcat gagctaactc ccttccaact 420 ctttcaacac ctctctccag atcagatttc ctgacattgt gaaagaagcc agctctctct 480 cgaggtggag ttttccacag cctgcgaaat tcttcagcct ttgaggggct catggggcct 540 gcaaaagccc tgatggacag cactgggtct ttggggctgc cagggtattt aggccaagct 600 ctctgggggc catcgtccgt ctggtcgggc gaccacggtg ccccaatgac cggggctgag 660 gaattgtctt ctgcccgcag gagtggcaca taatagtgac ctttcaagta ctcttttatc 720 ttttctttca attcagcaga tttgttcttg cttctttcac agactacttc tgctggagtt 780 tgatcatatt tgtttcttgg gttttttaca atggctgggt gtgaggtaag cacattaacc 840 acatccacat tcccaaactt gcaagcaaaa tgcaacggag tatcaaacca cattttatct 900 ggagtgttca ggtaaaggtc aacaatatat tggatgcgtt tcttcaacat gacatcgtta 960 tcatctgggt acatgagccg cataaattct ggattttcca gagtgtccag cagtaactgg 1020 cagatagcag gctgattctc cttggcagca acatgcatga cattgtacct acacccttcc 1080 tgtacaatgg tagggttgtc tcctgacccg atcaggtagc gagggttact ccaaataagg 1140 tcagagaacg ttgctgtgtc tcctttctcc acagctttcc gaagcttggc tgtgagatcc 1200 tgagtccgtg ggcttttgta gctgttggct ctctccttat tcgcagtgtc actctcgggg 1260 gagcacaaac catctctgtt aaatgatccc attttcactg gagacaaaca taaagaggac 1320 ttgcctggag atgggaaata atcacagatt cctttagcaa atttctcagc atcctctctg 1380 tttgtaaaag ctttaaaacg ggaaccctta atcagcttaa cagcctggag agcttccttc 1440 ctatcttcat aaacatgtat cctctcattc ctggccagta tgtcatcata aactgggcaa 1500 acaccataga acagtggagg atctctggat ggtgtctgag cagaggtttg tgaatctcca 1560 gcaccacggg ctggagctga acagttcatc agtgtcacag catcttcttc tggagggttc 1620 aggcccacac agtacccaaa gtccacctcc tcagcagcac ctccgtggct gttgtgactc 1680 actgggacat ttccagcagc ctcctctggc agagcagacc cttcctcctc cagggctcct 1740 tgctgctcca acagtgcctg agccaatttt ttttcaaaaa taaacctggt agttgcagta 1800 atgggcccac atttcagtcc tgctctcaca atctcttctc taagctcatc gtggctgagc 1860 ttctttaatc gggataatat tgtatccatt gttattgcac ctccgcggcc tcgcggtccc 1920 a 1921 // ID JV172694; SV 1; linear; mRNA; TSA; VRT; 1411 BP. XX AC JV172694; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15512.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-1411 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-1411 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; 2183c08adf9b45d5b0d7c9b4e1379256. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..1411 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 1411 BP; 275 A; 396 C; 411 G; 329 T; 0 other; ccataacaat tgatctgcaa gtttaatgta accaatacag acttttgggg gggcaaaaac 60 aagttctgag acaggaaact ggagggaaac aacgtcgagc tcacaggaat cacctcccca 120 agtcacacag ctctgcggtg accgaggaga tggccaagct ctgacaacac catcagtcaa 180 ttcaccttga aaaaagtcct ttcctagaca aaaagacctt gccaggacat ctccactcaa 240 ggtggggaag cccaggcagg accccgccgg atgtcaaaac actctgtcga actcagtctg 300 gttggtggcc gccgggttcc tgccctggtt cgctggctgc tggggcatgt gcccgcccct 360 cctgcgcggc ggggccaggt actcgaacat ggactggttg tgggtggaca gcatgttctt 420 gaggtctgag ggcatggggt cagaccagaa gaagtcgtgg ttgagggcgt catcgctgtc 480 gatgcgctgg gcggggtcca gcaccagcag cttgtcgatg aggtccagcg cgtaggggtc 540 cttgacgtag gccttgaggc gatccttcac cttccgcttc tgccccttgg gcaggtccag 600 cttctcgtac agctcgtact tgtccacgtt cggccacacc tctggcgtga tggagccgca 660 gagctggctg atgagggtga gctggtgctg ctccgtgttc ccctgcatga tggggctgcg 720 agtccacatc tctgccatga tgcagcctgc gccccagaga tcaatggggg ggccgtagtc 780 gcgctcccct aggagcagct ctgggggccg gtaccacagg gtcaccacgc ggttggtgta 840 gcggttgggc tggctgttct tggccaggct gaaagctcga gccagcccaa agtccgccag 900 cttcaggacc ccatcccgtg tgatcagcac gttcgctgct ttcatgtctc ggtgcaagat 960 cttgttcctg tggatgtagt aaagtccatt cagcagcatc tgcataactt tcttgatctc 1020 tgacagcgtg aacttgacat gggcgttgct gagcaggccg gccaggtcgt gctcacagaa 1080 atcaaacaca aggtagatgc tgcccttgca ccggttgtac ggagaggctt tggtcctgca 1140 gatttctatg aggttcacca cgttctcatg tttgagcagc tgcaggattt taatctctcg 1200 caaggctgtg atggggaacc cttccttctc attttccatc aacaccttct tcagtgctac 1260 tttcttgcct gtctggcgat gtttggcttt gaaaacttcc ccgaaggtgc cctggccgat 1320 cttggcgagc ttctcgtact tggaaacctc gtcgcagaag gggcactcga ccatgtcgta 1380 ctgcttggcc atggcggccg cgccgttgcc c 1411 // ID JV172695; SV 1; linear; mRNA; TSA; VRT; 2116 BP. XX AC JV172695; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15513.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-2116 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-2116 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; 0d311d8bde8016eada1c4b342b15dac0. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..2116 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 2116 BP; 431 A; 600 C; 477 G; 608 T; 0 other; cagccactgg aatttgtttt ttcctactgt gacagagaag gtgtcaagaa cagaagcttc 60 ccctactgta gtctccacca aagttggggg cagcctgctg ttcagctcat ccttcaagtc 120 ttctatgagt ttgtagataa tgttgtgcag tttaattttt attccctttt tatcagccag 180 ctttttgatg ctttcattgg ctttcacact gaatccaaat attacaccat taaatgcttc 240 agcaaggctg atatcgtttt cactgatgtc tcccattcca aagtagacaa tatctagttt 300 gcattcatcc tcacagtcat agctgtccag aatgttcaga atagcttcaa cagacccatc 360 cacatcacct ttcactatta ctgagagtgt gttttcatcc atctctgtcc tctccttagg 420 ccttgagaac atcagctgct tattggcctt gtagagcact gccttcctct gtctccaggt 480 caggtgggcc agcttctgct gctgcttctc atattccacc ctgtgttcct tttgctttgc 540 ttcaatcact tccagatcct tcttcatctt ctcctgttgt tcaacatagg tcctccaagc 600 cacaacttcc tgtgcccttt gctcagactc tacttcaagg atttcatctc ctgctgaagg 660 ggattccttc cagcccatga tttccacggg ggtgcctggt gaggcagcat ccacagcttt 720 gccattctca tcgaacagga agcgcacttt agcccaggtc ttccctgcaa ccagaacaca 780 gcctctcctc agagttcctc tctggatgat ggctgtggtg agtggaccct tccctttgtc 840 cttccgagac tcaatgatgg ttccctccac cagccccgtg gcatctgcct tcagctccaa 900 catctctgcc agagcaacag tggcctctgc caaaaccatc aggttttccc ccttgagtgc 960 agaaatattt acagcctgaa catcacctcc aaactcttca cacaccacat cgtgagcaag 1020 caattccttc tttactcttt caggatcagc ttcaggtttg tcacatttat taatggccag 1080 gataagagga actcctgcat ttttggcgtg ctggatggac tctatggttt gctgcatcac 1140 tccatcctct gctgccacca ccagaatgac aatgtcggtg acgttggtgc ccctggcccg 1200 catggctgag aaggctgcgt ggccaggggt gtccaggaag gtgatcttct ccccagaggg 1260 catgtgcaca ataaaagctc caatgtgctg tgtgatgcct cctgcttcca tggctgccac 1320 ctgggttttc ctcaggctgt ccagcagggt tgttttgcca tgatccacgt ggcccaggat 1380 ggtgacaact gggggccgtg gggtcagcac tgctgggtct gcaggaggtc tcttgacagc 1440 atctgtgttt tttctttcct tttcctcttt cagctttgct gatttatact tcattcctga 1500 tttctgaaca atcatcttga tgtggtcttc acttaagatg gaatctggtt ctactgaatc 1560 aaggttaatg tttgtgtaca gcagcacttc ataaacatga tctatgtctt tgcccatagc 1620 ttgtgccagt tcctccacag tcatcctctg ccttatctcc acttcacctt ttgtcagggg 1680 gatcttcttt ttcttctttt tttgtctcct cctttgtggc tagatgcctg cactgtggta 1740 aggcagcact gattaatctg tgttctggcc agagctgtgg atgcagaggg agggagccca 1800 ggggatgtgc agacaactcc acaggcttcc atcgtgctcc acacaccttc ctggaggaca 1860 gggcacgcag ctgctggcag gcaccacgga gctgcaccag attttcaaac ctcagcagca 1920 gcccttggtt catttccccc ctgtcagctg cagcccgacc tccccgcggg ggcagcgcct 1980 ttctccgagc ccccgggtgc cggccttgac agcccgcgga atgaaggaag gaatgaggga 2040 ggaaaagagg gaagggaacg agggaaggaa gggaaaaagc tccgcgtccc ctcagcgcct 2100 cacgcccggc gcgccg 2116 // ID JV172696; SV 1; linear; mRNA; TSA; VRT; 917 BP. XX AC JV172696; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15514.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-917 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-917 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; 62ed1369b78eb536fa377c8a808f93d9. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..917 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 917 BP; 288 A; 224 C; 169 G; 236 T; 0 other; tatcttcgct ttttaattct tgctgaaaag tgaacttttt aaatacacag tacccaccag 60 ttgtagtggc acaaaagaaa acacagtgag ctataacctc gaatccctac ccagccttta 120 aaaaattgct attgtacatt gacacctgta gcaacctcag cacccacagt acttcacaca 180 tgactaaata cccttccagt cactctgatg tcatcaccag aacaaggttt ttagttccct 240 agactccgtg caggacacct ctaacctcag cagcatctct gctggtcaga agcagaaggt 300 tgggcacaca agatgcctgc agtatcctaa aaactaggta aaaggctgct gtaaaaaaag 360 gatattaaaa aataagaatt gaagttgtag taaacagctt ctaggaaaca gttttagact 420 cagtgagaca cttgaatttg ctgtcagttt ggtgatttaa ggctgttccc atgcatcctt 480 cccaagcaaa ccctggggag ctttgcctga ttgagacaca aaggtgttca ggtgctactg 540 cacccagagc agggctgcct gcccaaaccc ctggcaatga aacctgggct cccttcagcc 600 caaacccacc tctgggaaac aattaacaag gaaatctcat ccagtttcca accagcattt 660 tctttcactg cacagggcat gcagaagaac tgcttttgta ctcctatgcc atcgcccggt 720 acttaggagt aaatacaaaa ttaataattt tttttcagta tcccacacat tatcaagcaa 780 aaaattcaag gtacttttgg aacagtaccc aaagccacct tctgtagttt ctttcattgc 840 ccagggatga gaactgtgac cagatggaaa agtgtttgca cttcagaaag tctattccga 900 aatacaaagg aaaccaa 917 // ID JV172697; SV 1; linear; mRNA; TSA; VRT; 1952 BP. XX AC JV172697; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15515.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-1952 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-1952 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; 50bdfdc7a6772df1bd3ffc6c783038e3. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..1952 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 1952 BP; 512 A; 482 C; 515 G; 443 T; 0 other; ttattattca ccagataatt cataaatacc agaacattgt tccacttaag tgcgcggggt 60 aacttatcct tagagagctg gtggataaaa accgccaaaa tttaggggtg aaattttatc 120 agggtgaaat tctatcaggt tttctccaca ggagacaaaa tgggagaact ttccaggaca 180 gaactatagt gcttgatggc tttttcatgc ttcaaaagtt tttctccagg aaaacttcct 240 ctgaatccat tggtgcaatc ctcatgcaga ttgttgtatc tgtgtgcaat ggcccagaac 300 cccagggtgt tcaccatcat tagggaagcc aagaagaaga agaacctctc caatttacct 360 tcatgcagca agtgtgggaa ccagctgcct tgagtgcctg cgtgggctgt ctgaacaatg 420 agagctccca caaagcagcc agctccgtta aagagggcta aaaagtgcat ggaaatccct 480 ctcattcctg caggcacgag ccagaatgaa agtaaggaac aggagggaga caccaaggct 540 tcagccactc cgagcaggat gtactgagga gccagatgga agcagggcat ggaggagacc 600 aggaaaagct cctcagacag agtctgctcc acctggggga agcgcttgcg gtgcatctcg 660 cagaagcctg cagccaccac ggaaagggca gcagataagt gacctacaac aatgtaaatt 720 gttggagaat gcccagtgtc cttggagcta aagagccagg agttaatgca ctccaaaata 780 ggaacaagaa tcagaagggg cacgatgctg atcacgttca ttgctgcaac tggcaacaaa 840 aatccaccaa agtgcaggtt ggaattcatg gtttggagat aatatcctga aggaatctgc 900 atgatgcacg tcctgtagag aatctggaag gtgaacaagg ggaagagcct ggccagtgac 960 tttgtgccct ccacctgggt ctcactgtag tgcccaccgt ggtgctcctt ggcgtggtcc 1020 agccagctgg gcacggctgt gccgaggtag cgctggcgca cgcagcgcgt cttcagggca 1080 ctgaaaatca ccccaaaggt ggtcagcagg gagctgtctg ctttgggttt gtaaatcatt 1140 tcaccccgaa ccatgtgaat tgtgatcata gccataagcc cagacacaaa cgggataaga 1200 aagccaaggt tcctggccac ggactgctgg atgtaagaaa tgctgacaaa gaccactgct 1260 gaattcaagt taaccagcca gtggaaccag ttgaaaaatg aaagcagctc ctttgggcca 1320 cagtcctcca ggctgtaggc actcagaggg cacacaatgg ctcttattcc tcctattccc 1380 aggctggctg tgaggagtgc aaagtagaac acgattttct gctccctttt gggcagggtg 1440 aggaggacgt gtcgtctgtc gatgtgaacg tcttcgaagg ggaatgacac cacaggtaac 1500 agtgctgtgc ctaggaagtg caggaacatg cagatgcaca ccagcttggt cctccccacc 1560 aggtactctg ccagccagcc caccagcact ggggtgagcg tggaggtgcc cacgaagcac 1620 atgttgacca tggcagcctg gtggctgggg tagcccagcc tggcagtgca gaagaggatc 1680 atgttgcaga cgatgccgaa gaaggtgaac ctctcgcaca gctccaccag cagcacgcac 1740 acggcctcgt gcagcttctt ctcaccttca ggctccttcc cagctcgttg ctccttgtca 1800 gccatgtggt tctcaaatcc cttctcctgc gtgtctgcat caggcatgcc tgtctttttc 1860 agtttttatt ttttttaaat ttttttgagt agatcagctt gagttacagg tacacctctg 1920 tgctcctcca ctgtcattag cagactggta ag 1952 // ID JV172698; SV 1; linear; mRNA; TSA; VRT; 476 BP. XX AC JV172698; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15516.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-476 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-476 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; 6e6be42540c49b5c738b6125c6f32828. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..476 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 476 BP; 85 A; 129 C; 148 G; 114 T; 0 other; aaaatcgccc ggaggcccca aaatcgcctt tattgatcaa caaacgggga cgggccggaa 60 atgggggagg ggactgggat atactgggat atactgggat gtactgggat gtactgggag 120 cgctgggctg gctgcactgg tccgtactgg gttgtactgg gttatactgg tttatactgg 180 tgggttctat tggtagtaga gctccaggtt catcccgtcg tggatctcat agtccccaag 240 cgtgacgtgg tctttgaaga tcgtgtacca ttttttgagc acgatcttgt cccagcgggt 300 gccggtctgt gccgctatca gcttcttcag gtcccggatc gagtcctcgg ggttgcattt 360 cacccgaacc ttcttgccca ggcggtcgtt gcacacgacc tcgatcatgg ctcccggggc 420 ctcctcgctc cgccacagcc gcgccggaac cggggctgac gtcacagaga cgcgcc 476 // ID JV172699; SV 1; linear; mRNA; TSA; VRT; 672 BP. XX AC JV172699; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15517.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-672 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-672 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; 25e0aac1e03c74bf5485aa275fffd71f. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..672 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 672 BP; 231 A; 141 C; 105 G; 195 T; 0 other; aaatctgcaa tcaccacaac actgcctctt ccatccacta ggaaaatctt cttcagacaa 60 ttctaaagac tcagacagga tcaacacaga aagcttctca cagcttttat ttcatcaacg 120 cattaagctg aagacataat gtgggtttta acaagataaa gcttttatta ctaatctaaa 180 tctaacagga acaaggcttt ttgtgctgtt cctgacagct tacccaaggg aatgacaatc 240 attcctagtc attgcatcat gctatttcac acagaggaac agagttcaga cagaagatga 300 aattgctgct ctcagtcagt cctcctcaac tctatggacc agtttaaaaa gtcttaacaa 360 aagtcaaaca tggtgaacct ttcatcttac actcagagcc agatcctgct gtaagctttg 420 cggaagatgg catgctctac ccttgactta gtatttaatt tctttttaga gaaaattaca 480 ttaagtttat gaaaacacag ggcacaacca gagacaaacc agtcaattca cttatgtaag 540 tagtctttga aacaggaatc aggctttgga atcctacata atatagtgcc ctagtaaaaa 600 aacgtaatct tgcattttta tacttcatgt gaaaattaga aaaaaaaacc caacagtttt 660 ttttgctata tg 672 // ID JV172700; SV 1; linear; mRNA; TSA; VRT; 925 BP. XX AC JV172700; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15518.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-925 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-925 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; 8c7960dd146e8f0e28007a167c8d9869. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..925 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 925 BP; 343 A; 152 C; 166 G; 264 T; 0 other; attttaaaaa acatccacaa aaatgtactg ctataggacc aaagcaaaat tgatggtggt 60 aactaaatgt caacagattt caaaccagat gtactagttg gtgctgtcat gaaatacgct 120 gtcagtgcat tttaaaaatg ccctctgccc cttcatcaag tttaaactaa acatctttta 180 attcaggaaa aaaaaggtag gtactggaaa gctctaacgt gctaaacctg tgagaaaagg 240 atgaggtttt ctaatgccag tcaggtaggt accagttata catagaggta taaatagaat 300 tactaattaa aaaaaaaaat tgtactgcaa gatgtacgta gcagtatata gtctaagagc 360 tcacctaatg aaagcaactg gtgttggtag tttccatcag tataatgacc aactacaaaa 420 tataaatatt gttctggtct gatttgatat aaaatgcaag ggactgttgc ctttcaccct 480 cagtaagcag cacttactca acaaatagat atgatccaag aagtgaaaag ataaaagttt 540 cttaggcttt taaaagtttt gcattctaaa gacacattaa tcggatggaa aattccaagt 600 aagtgctgtg ataatctata tactcagtac tagtggaaga gacagggtta catgaagtag 660 catgattgac tctacattct gtttgaaaca cagctggcta ggtgctaagg ctgaatttat 720 gagaatattt ctagtgaaac ttacttctat taaaatggaa aatcactgaa tagtctgaac 780 aataaaacct catcttgcta acagtaccaa aaataagaca aaaaataaca caggtcaggg 840 gtattttttg gtttctttta ctcaattggg agaaatcagt tttccattac acaatgaaca 900 acgtaacaga agcatcacac acctt 925 // ID JV172701; SV 1; linear; mRNA; TSA; VRT; 2122 BP. XX AC JV172701; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15519.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-2122 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-2122 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; 456c1cc66a23f6d850ee041680ea3bca. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..2122 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 2122 BP; 481 A; 514 C; 602 G; 525 T; 0 other; aaaaaaaaat tgcacaagat ttgttttgtt gttgttccct gttgcatgga cttgttcagg 60 aaaatggaag gttgatactg aaatgcagct gtgggaggca gggctggggt gtctggagag 120 cagggactgt gcagtggagt ttctgtactg cgcatctctg cccccttggt catgtgggtg 180 ctgcagggtt ccagctgccc agctggtgga taacaggttc cagtgcacct caggctttct 240 gctcttttac tttttcctcc agaagcagct gattcagtgc atggtttggc ccaaacagca 300 gacaccaagg aagccagccc tgttctttag ggagtgtgga ggctcagacc atgcactggt 360 tggatggatc agggcagggt tgtatcctgg tccctccctg cccagcctgg ggtggcttga 420 atgatgactt tggggagccc ttgaaattca gacctagctc tgaactcccc aaagcctgga 480 tctggagatg tgtgtgatcc acagctcaca ttttcctggc agttctctgg ttcttgcagg 540 aattggtagc cttcacttga agagttactt gctgtgcttt ctggagaaaa gccttcctgc 600 aggaagccct gcagagcctc cacaccaggc aggctgtact ctgacagtgc tcactgcctc 660 acttgtttgg ctgagcctct ggcctcccac tgtgtttccc tttactctga ttttttttta 720 ttcctccagg cagcaccacc ctgcctccag ggctgctcct gcctctggat cacagcacct 780 gcatggcctc ctctggccac ctggtgagtg tggaggcagg agggctgaga aaagcacttg 840 gatggtgaaa ggagggaagg aagaaggcat aatacaagtg cagcgctagt tctagtcagt 900 tctaggatct tggctagact gggagcttgg gacagagatc agagctattt ctccatttcc 960 tagcatgaca tgtggcaaat cctaattttt ataccattat atgttgcttc ctgttttgga 1020 gcagaaggga gtcactaatt tcaatggtga caaagcaaac tggaaaataa ggcacatatg 1080 gggtccattt aaagggctgt gtgaggagga gcccagcctc atggctgttc ccagcacaaa 1140 ccctgtgaca acatgcagcc aaaccctgtg acatgatgtg gccatcacag ccctgcccgc 1200 attggacaga acaggctgtg ctgggactgg gtggcacaaa cagctgcttc cagctggtgg 1260 ctttgtcctc caagtgaggg gaaggtggca tcacccttgc ctgggctgga agcagctgtg 1320 cccagcagct ctgtccaggc ttgcccacgt gggtttggct gcttgttccc cagatgcctg 1380 gctctggcca gcagctctgg gctgctccag cagcttaaga actgcaagaa aatggaagga 1440 agacatccag tgtacagaca gggcaaaacc cagatgtgat gaggcttctc atcacacaca 1500 tgcatccctc aatggaaaaa gagattgggg agacagagcc tgctggggca gagaggagag 1560 agcacaggag actcccagct caagggatac aggatgggaa cacaagccag ggtggggcag 1620 gtgggaagca gagcagggat gagagctgtg tgtggtcctg ttagctgctg tgcccagctg 1680 aaccatcttt ccagaacatg aggacagaga gaggtgcgtg gtctgcctgt ataatgtatc 1740 ctgtgcaagg gatgactgca catggaattt actttgcttc tacagcacat tcaaaatccc 1800 agagctggtc agtctgacag gcatccagaa atgttcagtg cagcacacag agctggcatc 1860 agctggggca gtacctgctc atgggtctgt gtgtctgaca catggcacaa gggctgcagg 1920 gagaggtgat ggctgagtgt gccaggaaac catgtctgct gcttcaatac tgcttccatg 1980 tccctggccc tgctccagag gggcctttgg tcctgctctt ctttagtagt cattcaataa 2040 ataactctaa tgcccgtagc aaagctttta cacagcctca ggttgtgttt ctgctcttgc 2100 agtagcatgg tgagctcttt aa 2122 // ID JV172702; SV 1; linear; mRNA; TSA; VRT; 840 BP. XX AC JV172702; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15520.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-840 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-840 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; 98e9abf7cff2b98368a0c7ccfa41efff. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..840 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 840 BP; 214 A; 200 C; 164 G; 262 T; 0 other; tgcttcaagg tagaatttat aaggtgagat gaaaggtaat tcaagtcatt aatttgcgtt 60 aagggctggc agaacaacag cggcgcattt aatcttgctg tggaaaaaat tggtgatttg 120 aagactaggg gtcagaatta ggggtctgac ttcctcttcc attcaattta aaaggggctg 180 cttcaaaatg gagagtttta tttactagaa acataaagct gagttaattg tcttcgaaaa 240 aaacacccaa ggactttaaa tataatatag aaaccaaata attaatggta ctaaaatgtt 300 ttcctcctgc ttttcattac tttcccatct aaattcaaca ttaaaaacgc actcctggca 360 gcagttcagc tcagacttgt cacccaccac cccagccctg tgaaggacaa gggctgccct 420 gtgctctgca gggtgcaagg ccctttcctc cccagcccaa tggccactca gcagctttct 480 tttcggcact gctgtgcttg tttgccagcc agtgaaacca ccctatggct gatactcttg 540 tcctttatta ctgcctccac tgccctgtgt ctcctggacc cttactggct tccttgtcca 600 tggattctgc tgtttattgt ttctctactc caagctgcct tctatttttg ctgccttagt 660 gttccttctg gtcttgctac atgttgtgct ctgctctccc ttattctcac ggcatcgctc 720 tgtttcatgt gccaaatgat tgctcttccc tttgagaaac atctcctaaa aacacattgc 780 catttcatca aagagtgaaa ttaagaggag ctggtttgac tgggagaaca tggaaaaata 840 // ID JV172703; SV 1; linear; mRNA; TSA; VRT; 514 BP. XX AC JV172703; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15521.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-514 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-514 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; 1bf6d9b6e8be4c6457b892458e6d3708. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..514 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 514 BP; 195 A; 104 C; 65 G; 150 T; 0 other; gtacaatttc acactgtaat agggaaaacc tagaagtcat tttagacctt gaaatcacta 60 gagagaaata aacactggct gattcacaca ttgatctttg accatgaact tccaaggcaa 120 ccacaatttt acacagactc cacaatatat caaaatctcc aaatacagag gtagtttata 180 ataaacatgt ctgaaatatg tcccagtcta atgttttgta cataatgtaa taaccacaac 240 tccactaaaa ggaggaaaag atttaaatta actccaggaa aattatgact gaatttccac 300 atctaaagag tcagatatta aaaacatatg ttagctataa aaattacata attccaagtc 360 tgtgattccc caaactggct taaacatagt taataaactc ctctataaat cagtttatga 420 ctataaaatc ttctaagaaa tttttagtct ctataactgg tgcccactcc catttgtcca 480 gctaactcta ccactctttg caactactag gaga 514 // ID JV172704; SV 1; linear; mRNA; TSA; VRT; 2319 BP. XX AC JV172704; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15522.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-2319 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-2319 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; 71e89d98990c5356e4f7469bea82454b. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..2319 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 2319 BP; 578 A; 529 C; 419 G; 793 T; 0 other; gaacaaatac agttcacaat ggaccatatt catattgtcc attggtcagt actttaactt 60 tcataaactt ttcagtaatt aacacaaggt ttaggaggtt ctggctttgt gttcaccaat 120 gaatcaaaat acaaatccat tggtactgtg tcccaatttg aaaaggcccc ttttccaaat 180 gaaaatgagg taaaaagttt cttaaaaaaa gccaacataa atcaatgaaa tagtcgtcct 240 cttccacgtc tgctcttgag atgactggca gagcgccgga gggttttcct ctcctgacga 300 tgtcgtttct cagcttcctg ctgtttcctt tgctgctctg acttctttaa tttgaatgtt 360 gcctgtttgc tgcctactgt ggtatcagac acattgagtg tgccaagttt ttcttcaagc 420 tttaaacgat cttcaagagt tttcttcatt taatttttgt tttttggcag agtctttgaa 480 gcttctgaat tcctctcctt ctttaatctc aaaaaactga ggttttagta atgtttgctg 540 atcctccttg agcctttcct gccgctttag tttttcctct tggcgtagaa gcttgcgctg 600 tttcctgacc tcttcaaccc agcctttttc atcatctgaa ctctcagaac tttctgcatc 660 acttgctttt ccttctggtt cttcctcctc ttcctgtcct tgtgcttcca gttcttctaa 720 gatctttagc ttcctctttc ttttctcact tattttagaa acaagtgggt taagtagcct 780 aaattcttca ctctgctcat ccacctggaa atctggattc tcaaacatga ccttaaaacg 840 atcatctttg agaaggctgg gcagattctt ttgttttctt tttttactga actgttgctc 900 ttctccttct tcttcaatca gtttgagtgc aagttcttta ttaacttttg ggagtttctt 960 caattgaact ctctgtgcac gagtttcttc tatcttctgc cttattttct ctcttctata 1020 ttcttcatag gcaaaggggt tggccatcat ttttgcctta tgataaagtc ttatgtccat 1080 gaagaagcca tgcatatatg ctctgagcaa tgatgatcca atgagatgag caaggcctaa 1140 attttcaagg tcttttctgg taacgaattt gtaatcatca taaacagtgc tttctggatt 1200 ctcttccagt tcttcagtca agttgtccaa gaaggaacac cattttgggg caggtcctaa 1260 aactggtata taatagatat tcattttagg ggcttcattg gcagtcatta acattcctga 1320 atttggataa aggcagacat catttatatc atgttctggc tccattgaag taaatatctt 1380 tcctgtatct ttgttccaca tttttatgat tcgagaatcc gcagagataa ttaaatccag 1440 ctgatgctga aactgaatgg atttaatagg caggccatag tggtgatctt tgactattaa 1500 tggattacta gaccgaagat catataatag gacctgccca gtagatgttc caacagccat 1560 attcaaggcc ccatcaaatt tcagtgctga aatggatggc aaaccttcta tctctgtgtc 1620 tgctgtcaca ctgcttaatg cacagtccaa cagccccact cgatttctag ttctaggatc 1680 ccagcattcc acttttccct cagccgtccc catagcaaac aagaagtgga caggatttat 1740 gtcacaggca ttactctctg aagcttcggt ttgcagggag ttcagaaatc ttccttgttc 1800 cagattcagc ctgtacactt cagaacttgc tcctacgaaa tacaggtcac atgatgggta 1860 gtggtaagag aaatctctac caaattttgg tattcttgtc ttgtagtaat ggccatgttg 1920 tgaatgaaac tccacaaatc tgccacactg caagaagaca atctttgagt aatcatctga 1980 taaaatctca aacgtaacca cttcggaatc taagcatctt tcaaatttct gggataactg 2040 ataggtatca aaacagcgga ccctgggctt gtaagttcca actgccataa tatactgtcc 2100 atctcttgat accttaatct ttgtgctaat agtgggcatt tcaaagtctt gaataagttc 2160 aattcttcta cggatatcca catctttctt ctgcaaagct cttttcttcc tgtcagagag 2220 ccactccggg aggctcctgc cggcgctcag gctgtagatc ttcacctcgt tgaggctgga 2280 gacctgcatg gccgcagccg cgcccgcctc ttcccgggc 2319 // ID JV172705; SV 1; linear; mRNA; TSA; VRT; 942 BP. XX AC JV172705; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15523.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-942 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-942 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; f4c426ca285c86d0c06dc1d64999403d. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..942 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 942 BP; 243 A; 215 C; 227 G; 257 T; 0 other; ccaaaacatt tattgacaaa tgccacatta ggtattccct tgaaaattca aatatcacta 60 ttatattgca cactgtttaa agatccccca atattttcat gtgtttttca ggaaaaacac 120 actattccat actatgattt tttaaaatta ttagttgagt ggcaacttca agaccaagag 180 gtctggtttc tgtgcttaag gataggatca gaagcatact tttagcaggc ccctgactgg 240 agcacaggct ggaactggcc agacatgcaa atttcctcct gcttttggcg cacaatgcgc 300 tggatggctg gggggaggcc acgggggttg cgcgagaaga tcagggagta gccatcgtca 360 caggagccgt cctccttcag gctgcggcag gcataggtga tggcatagtt atcatagtca 420 gtgtcaatca cccagtagtt gtccccaccg ctggagaggt agctggccag tccctggtag 480 gtcatataca tttttgctgg agtggttggg tcaggtaccg tgtactgagc agccatgtca 540 gcacagatca cccagaaacc aaaaagcttc actcggcctt tggaggacgc tgtcattgtg 600 ccgtcttcct ccacagtgta ttcagcagag atgttgtcct gaaggaaaag gccttctgga 660 tccttcttgg ccagggcata ccatttccct gcataccttt tcggatcaaa attgtctttc 720 acagagaaag aatccactgc acaggtctga gctaggctat attcaacagt gtagaagacc 780 gaggccagga aaacatactg tgcgtatttc attctgctga gtggagatgt tggagatcct 840 tgagactact ctgcttcagt ctttggactg caggtagcag gagggttttg tgtcaattgc 900 cctccagctc cctttaaata ggaatctaca aagtcactaa tt 942 // ID JV172706; SV 1; linear; mRNA; TSA; VRT; 566 BP. XX AC JV172706; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15524.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-566 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-566 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; cf3c41938fc36de2c3dc056a873826da. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..566 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 566 BP; 168 A; 128 C; 110 G; 160 T; 0 other; tgaatctgct ctcagcctgc aattgttgat ttttgacacc atttatatga acaaagtatt 60 atgattactg ctatcactgt acaatgtgtt attgagatat gacactttgg aagacttaca 120 tgtgaaaaat attatatcgc tgccaagggc tcaatccttt ttggtactca gctttcaaac 180 tttgccttaa ttcagtgcaa tgagcacctc gtaggatatg cccaacctct gctacgatac 240 aaccaatgca aatgtggtgc aaactcattc ctgtgttgaa gtattttcct aggaagtgtg 300 taagagtgac tgacagaaca tgctcccgtg ttaaaccaca gtttaccttc aaatagccct 360 acaaaaagct tcgtaagtcc ccttgacttc acttgtggac agctacagat cgaacaaaag 420 caaatgcaat tttggcagtg ttacagtgtg ggacactgca caaatcattc tgggtctgag 480 tttcaagctg tcacctggct gaggccatgc acaagatcac agcaaatgtg gaaacaggac 540 ctgaagcaag cccccccaca tttcaa 566 // ID JV172707; SV 1; linear; mRNA; TSA; VRT; 776 BP. XX AC JV172707; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15525.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-776 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-776 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; 2ee35ca48f4090dcec2281a998e79e5b. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..776 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 776 BP; 200 A; 191 C; 160 G; 225 T; 0 other; cctacaaaga gtagtagtga cagtgagcag cacttttgct tccttccaca cccctcttgg 60 aagtaaattg agatctgtat tatctgatcc caggaagcat tttgtttctt aagcaagagc 120 tgcttggtct gcaggccaca agaagagatt cttctgaaaa atcctgagga aaatgaggaa 180 aaaacccaca aaggatcctg gcagctccat agaaagcatt aatgctggaa gggagtgggc 240 ttgactctct ctgtcctcaa agaatgactc aattctccag gaactgcctt gtcttttgga 300 gcctagcaaa aagaaagcag tagcaagagc ccatgtcttg tctccttgcc tgagtcctgt 360 gttcatctcc tccaggcttt ctatctagcc tcccactttc attggtgctc aggggtttct 420 cttcctctgt tctgtttctt tttcttcttc ttccagtact taacagtttc agttttgtct 480 tggaaaatgg ggaagccttc ttgggaggca agtaggactt ccagtaacac agcctttgaa 540 ggcaccaaac cctaaggtcc cagctcctgc tgtccaagat cacacgggtt tcattcctgc 600 ttgtagtctt ctcatccaag atagctggaa tctcaaacaa tttccttgta gctacctaaa 660 catgcactgg aaactccatg ttgttcatgg cattcttcag caacacagcg agaacttcca 720 tcatatcacc agctaggctt gattgaccag tatgaaatgg tgcattagca ggaatc 776 // ID JV172708; SV 1; linear; mRNA; TSA; VRT; 2072 BP. XX AC JV172708; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15526.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-2072 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-2072 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; da2552715edf47913af7f738d971cc3b. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..2072 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 2072 BP; 604 A; 454 C; 420 G; 594 T; 0 other; cccctgacgt gtaataatga aaaaacttat caataaacat atagcaaaca acctgtagtt 60 actcagtgat aaccattatt taccataacc aaggccccct aagggttaaa tgttgcacac 120 tgcaggtaca gaggtacaag agggaagggc aaacatgcct aaggtacaca aacactgacc 180 ttaattgtca ttccccggaa aagggggaag cggtgtctgc catctctggc atcagccatc 240 tcctcttgcc ctggctctag gttctctttg gaccaccttt gactcgattc agtgacttag 300 tagtaggaaa taattgaaac aatttttccc tcactcccac agtagtttta ttttaggccg 360 aagagttaat tcaccttatg gaagctccaa aaaagtgcca gagatgatgg aatgggaagt 420 ggtgggaatc cacagcccct agcagaaacc agggccagct ggcacttagc ctggctcagc 480 tcaactttgg gactgaggtc tcaataccca attagaaaaa tggtcaattg agcttacact 540 gatgccacca gggggccagt ccagaagatt ttgaaagaag attctgtcat aattatgtga 600 gactgtgttt gaatgagcag gttgattaaa tctaccttgg ggtgggggct aagcagaggt 660 catacaaagc tgttattcaa agtaaaggaa tttaaaaaga taagacccag agcagtccct 720 cagtaacaac tgcaaaatac atgctataaa atttccttct cattataatg acaattagga 780 gagtttaaaa atacatatgc tacaggctta atttaaaaaa gaaaaaaaac cctgaaaaca 840 taaacacgaa catggtatga aggaatcaac agtacaaaca atgctttaaa ctttattaac 900 ttctaattaa ggggctgtcg tcactttttt ctggaagaat aaacgctaca ataactttca 960 gaaatgcaga cttatttcaa gttaaatgat gtagcattag ggcaggatca acaagtgcag 1020 gttgttgaaa tatgaatttt taaggcacaa aagcaaaatg ggacattagt tctccaaagt 1080 ttctcaaagt atttttgcat ctgaattttc attccttcta ctgtggcatt cgacaggact 1140 tggaaattgc aatgattgtt cagtagttgt tttttttttt ttaaactgtc ctttaattct 1200 tgggtgcatt taacaattaa aagttgctgc tctcaattgt cagtcagctg aggatcagca 1260 cccccttctg gcttcagtag tgtggggtga aagctggaac tcccataatc atgtaagaaa 1320 cctgagtata aatgttgttg acatttacaa gatcccattt tctcctgctg gatgttttga 1380 aggatctagc ccatgctgct tcatctgcac tgcgatatca aacaagtagt cataacattc 1440 acacatagtt ttggcttttt cccacgtctc tccccataca taaacaccgt gacgtctgac 1500 cagcacagca caagagtctg ggtatttttc cattgcacgt gccattctct ccttgagatc 1560 cttctcttct ggtgtattct caattatagg aaccactagt gtatcatcat atctgtaata 1620 gcctcctgaa gtacacttct ggattccttt tatcatctcc tgatgggtaa tagagaactc 1680 actccctggg taaaggaggg tagccataac agcagccttg gaatgtgtat ggatcactgc 1740 gcctgcccct ctcatagtgt aggcattcat aaaaagaggt gtgcactggc ttttctttag 1800 tttcttgtgc agtggaggac cactgatgtc ctgttcattc atgtcacaaa caaacatatc 1860 ttctggctgt attctttcct tttggactcc tgaaggagcg atgtagattt catccccatg 1920 tttcaagctg attcctccac cagttcctgt tacccagcct aaaccataaa acagcctaca 1980 aagctctggg ataagattcc ttggatgtaa cccatcctgc gccgcgtccc cgccggcggc 2040 cgccatggcg cggccagcgc ggggtccttg ct 2072 // ID JV172709; SV 1; linear; mRNA; TSA; VRT; 2605 BP. XX AC JV172709; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15527.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-2605 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-2605 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; 7431428347154684c1a0d2509f5f5ce0. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..2605 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 2605 BP; 661 A; 634 C; 572 G; 738 T; 0 other; tgttgggtgt tctcccacag tttggcatca gccaggacag agtagagatc agtataaaaa 60 caaagccaca acaagcagta atgaaatttg ggcacacatt tcatagtttg ggacagtaat 120 gacacggtaa tgaaacttac cagtaacatc tgctgcatct atttagcaag aaatagattc 180 tgaaaggtaa cacactcaca cagaattcct ctcttaatac aaaataacct tgcctgttgc 240 aactcctctt gtgttacaca aagcacattt ttgttttcat ggaggacatt taaaattcta 300 atataatgca aaagggaggg acagacatta gggcttctgt gctgcaggca cagagcaaat 360 ccacaaattc ctatttttta caacttgcaa tatcaaagcc tagagcattc aggacctatt 420 cagagaacta tctgcaaagt gtttttagta ggaattacct taccctttct tcatattttg 480 tttattacac aaagaatcag tgacaaattc tgcaagttct tccaaataaa tctgtttctt 540 gctatctatc ctcttcagaa cacagattta tactgatttg tgtaacaaca gaaagacctt 600 tggtatcatt ccatttccca gatgacattg acagttctct gatatgaaac acaaacactc 660 ctctggttaa gaatttcagg gtcaccatgc aagtcaagca aatgcccttc agccttttcc 720 tccttgtttt aggtttgttg gttttgttgg gtttttttcc ccagttttag aacctcacag 780 gtggagcacg gcaaagcagt gatcaggagc tctggttgca ttcttgatgt tttccactgc 840 ttagttcatc ataataaagt tagatttgca atgagctatg aactctgtga caggatcatg 900 ttcaccttct gtttttatag tgcctgcaat gctttcattc tccaagattg gaagaaaaag 960 ctgtacaaag tctgaggtat atggaggagc aatcacatcg agcacctctg tcacaaagta 1020 tctgatgagg gagatgtcag tgtccagctt ctccaggcat ttgcggatgt agctgacgac 1080 gggcaggacg tagccccggc tcagcgagtg aaccatcctg tccaggagag tcttcttcag 1140 ctccagctgc tccatcacat ccagctgaga atgttctgtt tcaaagagct tgacaagaag 1200 ttgcagaact tggggatgaa gcagctgatg gcatgtactg atctcatcca gcagggccag 1260 gtgaactggg gtgtgatcag tctgcagctg gaagtaccgt ggctctgaca ctgtccagtc 1320 cacccacttc aacaccccca tggccaccac tgggaacctg atgcactgat agagagtgct 1380 cagctctgca accagctcgg atgccccttt gttctcattg caacacagat tgtgaacagt 1440 ctcaatggct tttgaggttg acttgagttc atccttgttg atgctgactc tcttgttctt 1500 tttccacatc tctacaacac tagctgcata tgccagtatg tggatatatt tatgtttgtg 1560 gtcctggttg atcttagcac ctggtttaaa caaggactgc atgaagaggt ccagaaatgc 1620 aggcactcga atcagttcta ctggaggtgg gtccatgctt gtaaacattt tgaagaggac 1680 agtgatatct gctggattca gagctccttt ggacagcatt gcccccagag cctggcaagc 1740 tctggggtag gaggctgcag tacccagtgc taaggtgatc tgactggcat cgtggccttt 1800 ctcgtgggcg tagcgctgca cctcctgcgc gatgcgccgc acggcggagc cgccctgctc 1860 ctcctgcgcc aggatggaca tcatggactg ggcaaagagg tacgtgtgct ccccatggca 1920 caccatctta gcaaactcag ggaggttttt ctcaaggttt tcttctcctc catctaaaat 1980 tgttgccaga gatgtacgca ggactctgga aaatacttct agttgctgac atgctgttga 2040 aacactcgtt atttctcctt gatacccagc atcagatata agcttcacag taaaattaag 2100 cattaaacaa tcaggatggg cttctgccaa tttgtaaaaa aggtctctcc acgtggtatg 2160 tgctatcatt tgctcaagcc aggctggagt ctctccctcc tcggtgaaga tggaatctgc 2220 cttccgaggg tcgaagtgct tgatcagcaa actcttcaag tggttctcca cagtctcctg 2280 cacctgcatt ggctcaacac ctgtctgaat gagccactct gccagcaaat tgacagtctg 2340 tgccactgca gtgtagtttt cagagaggag ctgaataaca ttctctggag atcctcctgc 2400 ttggaaatat ctctttaacg tgttaaatat agacggttcc attatataat caggcgttga 2460 aaatttcttc aggcactcct gctgaacttc ggcatcatct tctccctccc catcctcatc 2520 atcttgcgcg cccccgtccg cctcgctgcc ccactcggcc gcgctgccct cgaagtaatc 2580 ggcgtcctcc atggctccgg cccgg 2605 // ID JV172710; SV 1; linear; mRNA; TSA; VRT; 773 BP. XX AC JV172710; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15528.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-773 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-773 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; f159bd57343e1ecf98fd165c15ccf954. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..773 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 773 BP; 226 A; 155 C; 157 G; 235 T; 0 other; ttttaagtga tgctttattt cccactgcag ctaccaaagc aagataaatt acaaacacct 60 gtcaaagaaa cacctgacaa acaaatgtgg atctgcaggt gaggctgaaa acaaccacaa 120 gggaatcagt ggtgggtggg aagaagggag caggaaagac aagtaaatat agggaatgca 180 attacagtca ttactgaaaa tattcaagag gccaatatac aagtcaggaa tactgaaaat 240 ggactcagca tgtcccctgg aacttctgca tatttagata ttactgaggc ctcagccaaa 300 gctctgcctg tcctgtctga tttccagagc ccagtgcttt gcacgttcct tgcctttcaa 360 agatccattc gtttatttct tggagcagtg cttgcttgaa agctttctca gttgtcctgg 420 tttgcatgct aattcagccc agtagtaagt ccctgatggc agtcagcctg attttgcact 480 taacttgttc ccaaatgtct gtccactttt gagattctct ttaatgctaa tacatcactg 540 aactctctgt tgcgtgagag attctctcca gagaatttca aaataagaag ctgaaatgtg 600 gtatttcaaa aagtcaatat gaagacttgt ggcttttcaa aagttatcct cttttgtggt 660 aggactgctt ttcaaattca tatgttcttt tggttgtact ttagtgactt ttttactgag 720 cctatggaca agcagaaaaa agccacccaa gctgtgtgaa acattttgtc tta 773 // ID JV172711; SV 1; linear; mRNA; TSA; VRT; 2071 BP. XX AC JV172711; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15529.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-2071 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-2071 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; f5a027901ed3cccfccfe2ac51c063a77. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..2071 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 2071 BP; 547 A; 506 C; 418 G; 600 T; 0 other; cattttaaac tacagattat ttatttttct gctcatacta ctttttaaaa gacagttcaa 60 atagatacag ttagaaattc ttttttttct agcccaagat ccattcttat caagatccta 120 ttaggatcca cagacaacat ttgcaattct ccctggtgtt ccaaagtgct ttacataaaa 180 atttcaatta aaattaatca ttaaacatgg cattacattg ggtcatgtat ttaggtaatg 240 ataatctact tctactactg aaggcagaca gaaaagaact ttaccactga tttaagtaat 300 tttagcatgg gatgaaatgg tgaggttatt caagtcctaa ttctgcattt tgccaacacg 360 attctccttg ctgctgttca gcacacactc tgcagctctc tgtagcaggc agtctctctg 420 aagaggcaga gctcattttc tgatcaagtg actgctatga actccaagaa tgggttttag 480 aacccaagaa tgtattaaga gctgtaattg catttatgtc tcagggaagg ttaagggaag 540 aagaactctc tccagctgaa aagcaatttt caggatgaag ccagggggtg ttatttgtaa 600 ctgagaaagg aacaaaaatt taaggccatt gttagaacaa gatactccca ggaaggagac 660 tgcaaactgt ggaatggaac atgggacctc acacttttaa ttggtgcagt tcagcaccag 720 attaataagt cttaaatgta actcttttat ttgcagtctc agttcttgcc ttagggagtt 780 ggtggccaaa tctcaattga aacatgcaag gacgctgaga cattgcaaca atttcctaaa 840 ctgaatcatg ttagagcttt gtgttaagta aaacacattt gaattgcaca gaaatgagac 900 tgttttagct gtagctatgg aattaattta agaaaatgtt aggaatttgt tgttattttt 960 aatgagcaga agtcacagtg catgaagggg aggaatacat acccacatga aggaggagag 1020 agaacaatcc ctagcacaag aacatcccac agcacagcta cacctacggg cccctggcat 1080 aaagggctca gtctatttcc agatcactgt cttcactgta acatgcagat ggattatgta 1140 tagaagtcag cagcagtacg tctttttctg gcagcaaacc acactcctgc agaaaagcct 1200 ccaggtctac agcaaaaaaa tcttctccca gctggtcggt gatgcgcacg aagttgccaa 1260 tgagctcccc tgccttgtag accagcaggg ctggcagggc attgttagtg aagcgagtgc 1320 tggcaccaat gagtgaactc ttcactctgc agaatttcac tgttgggtac tcagcagcca 1380 ggcagatcat gcagccgttc agggactcag tgccagggat atcatcttca taaatatgga 1440 tcatgatcag tgtgctctta tgctccttgt ccacggtgtc cagaaatgct tccccactgg 1500 tgatctcaaa cacctgcttg aattgctgcc cactgtacaa ctgctgcctc atctcctcca 1560 tccgctgctt cctgtagcgc tgcaagaact cctcgtcgtc ctcatcattg tggatcatgc 1620 tgtattcctg taaagtcatc tttccattga ttttttcctg aagctctttc tgcctctgct 1680 gctcagcctc ctcatccagg tgagacctgc aggtcatgga gagcttcttg atgagcctct 1740 ccatctccct gcgctgctcc tgccgctgct ccgtctccag ctgcttaaac ctccgccagt 1800 cgttgatcac tcccttggga cctgtgttga tagcgctgcc atcgctgctg agctccacct 1860 cgcccacact ttcaggaatg ctgctctccc cttctttatc ctccttctca ctgtcttcat 1920 cctcaccctc actgctgctg taataatact gcagcttctc gccaagcagt ttatcatccg 1980 cagtagtcat tatgctctgt attcctttcc agtctttcag agacaagctt ctaccaagac 2040 ctctcccgcc gccttccggg gccgctgcgc c 2071 // ID JV172712; SV 1; linear; mRNA; TSA; VRT; 655 BP. XX AC JV172712; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15530.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-655 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-655 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; 71a6737bc896b21c56cb03d890dd3078. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..655 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 655 BP; 165 A; 157 C; 127 G; 206 T; 0 other; acacacactg gccacaccaa gttactgctc tcaagcactg acaacatttg agtggcagat 60 tttgctgttt aataaagaac agctatgaaa aaaaatcttt aagcttcact ccctcacata 120 ttttgaaaaa aaagtgacca agtgcgagta cctccctgga tttgtatttc cagcttcatg 180 tatattaagt caaagactga cattagaact tttcttaagc catttatcaa aaataataat 240 ttgcagggac aaaccctctg aatgagtgat tttctttctc attcattttt tagcttggtc 300 ttctagtaga tccttagctt cattgatttt ggctgctaca tatggagatc cacctttatc 360 tggatgattc agaagcatga tccgtctatg agcctctcta attttatttc tgttggctgt 420 agggctcact cctagtatta aagctgcttc tcgtttagtc attttgggtt caaatccacc 480 tctgtaataa ccaccactga aggcaccctt gggtaggttg tgaagggctt gctttacttg 540 tggctccatg tgcttcaaag cttttactgc atagcgacct gcgaatccgg ctgccgctat 600 ggccaggccc accgccacca tcgtgctggc catgtccgcc ccgagcgtgg cccgg 655 // ID JV172713; SV 1; linear; mRNA; TSA; VRT; 1881 BP. XX AC JV172713; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15531.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-1881 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-1881 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; c89f9624548b2f0450c94fadb7bacde9. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..1881 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 1881 BP; 577 A; 394 C; 416 G; 494 T; 0 other; ggactgaagt cagttggttg ttgtgaggat gaggaagagc cagtgcctgg aggagctgcc 60 cacaaggaac accaaggaga gacagctgtc atttatggaa acagaatctt ttcgtgttgg 120 aggaatgtaa attcttgctg cttggaacct aatatagtgg acttggtctt aaacagaaaa 180 gtgatgtgta taaggaaaca gctttcagca aagcagactc agtcaagcag aagttaccct 240 ggagactaac caaactctgt caaaaagctc ccagttcttt gccttactct aagcaggtcc 300 ttcaattttc aagcagtaaa gaatttgaag gagtcttctc tttcagttct cctcaagttc 360 tcactttagc cttgctaaaa taagtaggga cagagtttca gttttgctat ggatttctaa 420 aagatttttc agcagctgag aacacaggaa aaggtaggag cagcccacac ctgtctccat 480 ggacagtggt gtaaaatcag agtcccagca tcacatttat ttacttgtgc aatgctaggc 540 ttatatatat actttaaaca agaaaaggac aaaagcaatt tgggttttgc agtaaaaaca 600 aggtatgctg agaaactgat tttgcctagc tttctctgac agttaagact ttccctggca 660 cacaccacaa actggctgaa acagaaatcc ttgggaaaag aaagggggtg atagcagcat 720 gttacagaag gaaggagaaa gctgtgtgcc tgtcactccc tgcacctgat ggccctgccc 780 caggtgcact gcagagcact cagggtaggt tcctaaaaca gggcaagctc agaaaggctc 840 tgttttccta ccaacaggaa tgggcactga ttgtggtttg gaaacaaaca cctctgtcct 900 tcctcaggat ggctggatgg tcacacccag cttcctccta gctagcaggc tctgttcagg 960 cagctgaact cacctcactg tcctttctct gcattaactt tgctgcagag gtgagttttg 1020 caaaagcaac aagtatcaag agccgttact cagcaacaca aagaggactc cagtgaatgt 1080 gtttgtagat ctaccccaaa aatgtgtaga gaggaaaaaa aaccaaacaa atcccaaaca 1140 tttttcagat attcaatgtt actctgaaaa aaatctattg tctctttgtc ctgtctgcat 1200 ggcaagccta aattcaagtg attgcccctg gagtagctgg attgatcaag aaattcaaac 1260 acaagagcac ttaccagcaa atctcagggg tggcagaaat aaaaacactg ctcaatttta 1320 ctcatcaacc ttccttgctt tttctgcatc ttcacaaata tctgttaaaa ctattcttgg 1380 ggcttcatgc ttaataggaa gcagcatcag taaaaattca ggtcgaggac aacaaggcag 1440 gatggttatg atggaaattg catctgaaaa ccttctctct taacgtcagt gtggatcttc 1500 gcattaaatt gtacgagagg ctcagggcaa cgatgcagag gcattaatgg ttaatgcagt 1560 gggacatgct cccttgtaat tgcctcctgt cgttgctgca gtgcctggga gatactgtga 1620 agggacagag cccagtttac aatcccacgt caatggatct tctcaaactc agaagtaatt 1680 tttcttcttg aatgaattgt caaactccat tgtattagca agtttacctg gaggggcttc 1740 acctctggtt gggaaaagga aaaagggcct tcttgccaaa aagttaaaat tcttacaata 1800 gaacagtagc aaaaacaaaa agccatgacc tgggacagta cttttggctg gtgcaaacaa 1860 aattcagcta tcaagtaaga g 1881 // ID JV172714; SV 1; linear; mRNA; TSA; VRT; 1406 BP. XX AC JV172714; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15532.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-1406 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-1406 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; 5818ca8b5808823d8e28bba349e541b3. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..1406 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 1406 BP; 359 A; 359 C; 380 G; 308 T; 0 other; gagaaaagcc agcataaagc gtttttattg cgataataaa ctggatacct ttgtgcggcg 60 gagaaggaag tgactggtgg gaatttctgt taccaaggga ccgggcaggg cagagggagg 120 ggcgacaggg gacagctatg cgtcctgtga gaccaggcaa gcagcgatga ccagcatcag 180 gtggcaggag agaatgggca ggtgtgctca gagcaggaca gtggggggct gatggttcct 240 tttcatgggg aaggaggaca gaggcgtttt tgttgagttg agcccccacc acctcccctg 300 cagacagcac cttccctttg tccagttttc ctttttcttt aaagaaagct ccatgctacg 360 ggattttcgg ggtgtggtgg agctctggtg gaaacccaac tccctaaatc caaaaatgat 420 ctggagggga aggcaggccc accatgagat ggcagggtga agcaggggca gggcagccct 480 cctttcccag agcaaaccca caaggcctgc agtgatgctc cccagggagc agggaaaggc 540 caggctccct tgctgtccca ctccaggcag aattcctata aacaatccta gtgctacctt 600 gctctctgca tcccttcagc ctcaacaacc tcactctgct atggcttttg cagcagcagc 660 aatttctggt ttggaaacac cataaatctg caccaaaaca agtaactaac aggattcctt 720 ttgttcaaat gactcctatc taaggtcagc ccatctgcgt gctactggga aaacgaagtc 780 tacacctgga acaaaataag attaagaact tgacccaaaa agagttgagg tttacggtgt 840 atagtttaaa aagacataaa aacacgatac aaggaggaag agtcagacgc aaagcttagt 900 gaccaaaggc attcaatcaa ggtgtaaggt tatacaatga gtgtagtgga ctatcaggaa 960 aagctccata caaagtcatg tgcactcttc ttgaagctga gattctggat tcctccatgt 1020 gccaaacccg aggacagggt gctgggatgg gtcattccaa tttcatgagc tccacgtcaa 1080 aaattagagt ggcgtttggt gggatgattc ctgggtgccc agtggagccg taggcataat 1140 ctggggagat ggtcatcttt gcccgctgac caacgctcat ctgagcgacg ccttcctccc 1200 agccacggat cacctcctgc ttgcccatca caaacttgaa cggcttgttc ctgtcgcggg 1260 aggaatcaaa cttcttccca tcctccagca tacccgtgta gtgcaccacg caggtctgac 1320 cgcgcttggg gaacgtccgc ccgtcgccgg gggcgatggt ctccacatgc acgcccatgc 1380 cggtgccggt gccgctcgca cccgca 1406 // ID JV172715; SV 1; linear; mRNA; TSA; VRT; 849 BP. XX AC JV172715; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15533.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-849 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-849 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; c429330d034bbaa310af17ffaf30ea3a. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..849 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 849 BP; 236 A; 148 C; 167 G; 298 T; 0 other; cacaaaaatt cagatgcaga tgtccttttc attacatctg ttacttagag atctgaaaga 60 tcactgccag tgtgttagac tactatgcat gtatttttct tacaatataa cttcatatgc 120 aaggaatatt tttgtgattt acaaattcat accagcaatg gaaaaatggg aagtggggaa 180 tttataaagc ttattaaggc ttggctttct tttctctttt atttcaaagc aattcttgtt 240 tactgcatga tctgatttaa atttgtcttc atgccttgac ttataaaaag atatgcttcc 300 ccattgcttt ggaattctga ttttgtcaat attcctcttt acctctgctt ttgttgtatc 360 agcattgtaa ggattgttgc ttctttgctg ctcttgtctg cctgaagtct gttaatcctt 420 gctagctcca gaacagttac aggagggcat ggctcgttct tgttgcttgt ttcccataga 480 tccacaatga tgatggtgtt tggctgaggc tgaatgatga aacaataaag aagtatgttc 540 caaacatgaa tggttacact gaagcctggt gtctgtcttt taaccaacat cttggcaaga 600 gccttctggt acctgttgac gtaagtaaaa ggtgcctttg aaaaatatcc aaaagtacac 660 tctatcctca ttacaagact ttctttaatt aaggctgcaa aaagtcctga ggtaaacgat 720 attttaatta tcaaatacaa ccttatatgt gtgcgttttg gagggctgct gtgtaatgag 780 ggtggagtgt agaaaggtat gaggcttttt atactgaagc ctcttctcct agaagagaaa 840 cagaagtgc 849 // ID JV172716; SV 1; linear; mRNA; TSA; VRT; 3262 BP. XX AC JV172716; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15534.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-3262 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-3262 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; 685ea9d3a9e0886926b97539439642e3. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..3262 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 3262 BP; 669 A; 863 C; 620 G; 1110 T; 0 other; actctagcat tttccaaatt accgcttaac cttagacagc tcttccttta ggttcatcaa 60 attactttcc agatcagctt tttgatgggc tgttctctcc tgctcttttt tctagctttt 120 cttccctttc tttacattcc accagttctt gcacatgatt tctgttgaga gactcactct 180 gctctttcag ctgctggaca agcgtcttct gctcgctcaa gacagtctca gtgactgcca 240 gctcacctct catcctctct ttctcatcag tggcctgctg aagcttgact cgcagatcca 300 ggacttctgc ctgcagcctg gacacttcac ctctgttgac ctccagctgc tcttcactca 360 tggtcagtct gaaggccaac tcttttgctt ccttctccag ggacgctgcc tgctgtagtt 420 gctgcttttc cactgattcc ttttctgatg tgagagattc tataagtttt gtctgatgaa 480 ggcatgtctt ttcaacactg agcttttctg tctcaagagt ctctgctttc ttcttgtgtc 540 tttcagcttc tgctcttagc tgttgacatt ggctctccat gccctgcagt tctacttcct 600 tctgtgtgag ctgcaactgg agacactctt cgctttcctt caaggtgtcc aagctttttt 660 ccatttgtaa actatgctgt ttggcactct tcagctgtgc ttcaagtgaa gcataagact 720 ccttggaggt ctcttctctt tgctttagtt cttcatattc tgagtgcaga gcctccagcc 780 tctcctctag aatttggctt tgcctcctgg cattctgcaa gtcttcatcc agctgtttgt 840 tctcactccg gagcttcttc tctttttcat caacagacac cagagcatca tctatctcac 900 tctgaagttg tttctcagag gctctcaact tggctacatc ggcttctagg gaagctttag 960 aagcttccag atttttcagc ttctcttcca tcttcttctt agactgctgc aaattttcat 1020 tctctgcttt cagtttcctg ctctcctcat ccagttcact cactgcagag ttttgctgct 1080 ccatctgctc ctccagctcc ttgactttct gcctgagatg ctccttctca gacatgagtt 1140 tctggttttg ctcctgaagg ctacacacag tctgactcac ctttgttaag cgaccctcct 1200 gtagttcaag ttgctctgct tgtgactgga cttcctgctt cagtgctcct tctctcctac 1260 catactcctc ctcaagtttt tctttttcct tcctggcttc ctcaagattt ttttccagtg 1320 aacccacctg agccagcgac cccattacct gggtctgaag ctcagccatc tcctttcctt 1380 tcagagtcag ggcctcctga agtgcatcct tttcctttgc catggtctcc aggctcccag 1440 tcagcttttc actctcttct ttggagttag cagtgaggct actgtatctg gattcgagtt 1500 ccttctgtgc ctgttctttc agcagcagct cctcccttgc tgctttcagc tgagatgcat 1560 gttcagcatt aagtctttgc atatctgcct tttccttttc catctcctga agcttctcta 1620 acagtgcccg tatttgtagg gcagagtcat agtgggctgt ggcttgctgt cccttttcgt 1680 ccaaggcagc atcaactttt gcaaggaggt tgaggttctt ctgttctgtg gaactcagct 1740 tggctttgag ctcatcaatg caaagatcct tcacagcaat caaagcccta gaggtctcca 1800 gctcctgatt tgaaacctgc aattttgagg cacaatcttc cttgctggtc aacagctgct 1860 ccacctttgc tgagtgttcc ttcagctgct ccgctgcact cagttccagt gactgtaggc 1920 acttctgcag gtcatgcaca gtgctctgag tggagtgtga gacctcacac tgcttctgta 1980 actctgtgat catctttgtc agccgggagt tctcctcact gtagttattg ctcttctcct 2040 tttctacctg tacttgttcc ttttgaaggc tgacagctgc ctggagctcc tggttttcca 2100 tttctagctg gtgaatacga tcttgaagtt ccctctgcct cagctcagcc tggtcaagtt 2160 ctaaacgcat ctcttcgtag ccctcaaggt gttcaacatt tagtgagtta ttcacatcag 2220 ggctggaagg aaactcttgt gcctgcaaat aattgctcac taaactgctc atgctggaac 2280 tgcgacttgg gggcttccat aaatatgctg aagatccaag tgaggacaga gtcctcctgg 2340 caaatgctgg ccaagcagca tctaaatcat agcctcttga tgccaagtca aactgaacat 2400 cagtgagctc atagagttga cccacaatgt cagaactcat tttggaattc agaaatggac 2460 ttcttgcata gtaccagtca ctggtcactt tggtgttcat aaaacattgc tgcaaggtgt 2520 ctgctagcct ttggtgaacc agggaataac gaataaatgc tcttcctttt ccaagagagg 2580 ttcgtagttc tgtaatagac ttgacaaagc ggattccatc attagctcct ttgatttttg 2640 ccagacaatc acagaaataa tcccagtagt cttttctgtt ccccagcaat gtgctttttt 2700 ctttctggtc aaactgtaag aggtactcaa gcttgtagga gaatttttgc aagttgacac 2760 tgtcgtctgt gatcggttcg cctccttctt taaattcttt acttaattca gtcactgcat 2820 cttgcaagtc tctgataatc cgctgcagct ggctttcgcc actcgtggct gccatcttgg 2880 gaacaaaagg aactcccctc ctgggccggt aaccttttca tccatctaga taaaaactgc 2940 agagttcata tccttgaaga ccattgggtt gataatgatt atttttctct gtgacacctg 3000 caattgtaaa agtcaaaaat aaaatggaag tctttatcag ctcaaatgag tagaaaagaa 3060 atgctttgac attttagatc ctgttgagta atgaattcca aagtccactc tttgccagga 3120 atctccttaa tgttttcttc tagttttcac tttccatttc agttatttct tcagttatat 3180 ctttcaaaac aaccaagcaa acctcagaga gcaattttct ctggctggag ttacaacaca 3240 tttggtagta cagctcagct ct 3262 // ID JV172717; SV 1; linear; mRNA; TSA; VRT; 1020 BP. XX AC JV172717; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15535.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-1020 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-1020 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; 206d62335f7a9e040a0f2a9b56b67900. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..1020 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 1020 BP; 264 A; 276 C; 192 G; 288 T; 0 other; ttttttgaat tttatttctt gtgcggctaa ttatagttcc actatttaag acacttaaaa 60 agacaaaaaa gtataaaaat ctaaaaaaag acccaaaaac caaacaaaaa aagtagcaaa 120 aacctgttcc tttctagtgt tgtcggttcc actgtttttc tgctcctgtg tgttgtaacc 180 cattctccac atccgagagc tcacacatca gccctgcgga gctgttccgg gtttcccaac 240 caactaatgc ctctctgatc ccattcccac ccgctccttg ctccctttct gcctgctcct 300 cttttagttc tcagccagtc ttgtgcatga cattctgtcc tgccccacct ccaccacagc 360 tttcttttgc ccttctaaac agaaaacctc tttcattaat agctgggtgt ttaaacgtga 420 taacattgaa aaactggatt taaacaaaag attaggcagg gaaaaaaccc aaaccaatgc 480 ttgcaagctg gtccacactt cagtaattcc cacaagagtg tgaaggtgct ctgtgtcttg 540 cacagagact tttccctgtt acaccatttt gtctgtccca acacagaaag ccgttactgg 600 gttatgcatc actagaatga aaccattttt ttcttgctgt gtagcactga gtgtggattc 660 tcaccgaggc ttggttctct ccatcagacg taacccttga attgtgcaga gcccggttct 720 ccctgcacac tccccagcac tgctgggtga ggtgccgggg cagctgtggt cacctgaggt 780 ttggaatgtg tcatccatca ggcacagaac caaaacagaa caccccaacc cttgagtttt 840 gtgttcatgt aacttctaac caagagtccg ccctgtaacg cgtctcctcc gtgtgacacc 900 ctgttctcag aacaccctgt cccgactgta agctctctcc acagccctga ggaaggtatt 960 gtaaccagag ccattgtact gatgaaagcc ttctggtagc aataaagaaa gttgtcctgg 1020 // ID JV172718; SV 1; linear; mRNA; TSA; VRT; 2609 BP. XX AC JV172718; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15536.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-2609 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-2609 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; f241d055f591e99457c76abcbf7774bf. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..2609 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 2609 BP; 824 A; 504 C; 447 G; 834 T; 0 other; caacttcacc aactgctacc taatcatgtg cttcagaaaa agaaaaagac attcaacaga 60 agggatcagg ttgacagctc tgaatgacag cagcctagac ttgtctatgg acagtgataa 120 cagcacgtct gtgccttcgc ctaccagtgc tatgaagaca agtccgttga acagttctgg 180 aagttctcag ggcagaagca gtcctgcgcc agctgtaaca gcagcatctg tgaccaacac 240 acaggcttct gaagtcactg tgccacaaat aaattccagt gaaagctcag ggggtacttc 300 aaatgaaagc attcctcaaa ctgccacaca accagccatt tctccaccac caaagcctac 360 catctctaga attgttccct cagcgtatct attaaatcca tcaccaagaa gttcaggaaa 420 tgttgcaaca aaaatgccta gccctgtcac agcagtgaaa aggacatctt ctccccataa 480 agaagagtct cctaagaaaa ttaaaattga agagcaggat gaaataagtg aagatactag 540 ctgtatagat ttgaatgaac atgaaaaaat ggaaactaag gagcaagttg agacagaagt 600 gaatgttaat tctcaaacag aaactcttca gacaacttct cttcaagctc ctcagaaaac 660 acccagtaca gacctttcag atatccctgc tcttcctgca aatcctattc ctgttatcaa 720 gaattcaata aaattgagat tgaaccggta aaaaccacct caggggtcca taaacagtat 780 ctgccaactc aacctgttgt cttctaatgc tagaaaaaaa ggagaacgga gggtgcaaga 840 ctagaacata atcgcaaatg gatttaggta tatgttgtgc acttcccttt ctggactaaa 900 gtcgccgctt gattggaagt ccaggttagt atgtgaagcc aggagtacaa ttaatgtgtt 960 agcaacagtt acattaaata tttcgaagga ttactgcctt taaaaacatg aacactattt 1020 gtagccatat ttgacattga ttgaatttgt ttgatgcatt gtttcaaaat tgagataaaa 1080 ctggcataag aatcccttaa atgcactttt atgtactttt ttattggagt atgactaatt 1140 ttagatcttt agctgatgaa atttcatttt attgaagagt ctcttcaata gtagtaattt 1200 gcaaattgga tgacattcta tgatatacta tacattgaaa gccaagtgta tagtatagtt 1260 agttcaactg ccatcaagag cagtaagtct ttaaaatgta atgtcaaatc ttggggtcat 1320 aagacgtaag ttgaggaagt aattgggaag gttttggtat tggtgggaca tgattaagat 1380 gtggtctact tttatttata ggattgtttt aaggtgcata caaatcagca atcaaatagt 1440 aaataaactt tcttttgagc taactgaact ccttattccc tttttttatc cctttatttc 1500 ttgggaaaat attttgcatt tactgttggg gttttttttt caaattattt tttctgcctg 1560 tatgcaccat atagaacaat agttatttat acaaaatgaa aataagccat gtactcattt 1620 gggttccccc ctgcccctta cctagttgta ataccctgtg ggcctctagg cacaaattca 1680 gaatttgtcc catgactaaa gtgtttaggt aaatattgtg tgcctgtgaa atacaccacc 1740 tgtcttgatg gcctttgaat cactaaatat gatttttgta cactccataa aggtcccgta 1800 tgcattaaaa agctaaaaat tttaaataaa ggcaaaaaga tttttcccta aaaattttaa 1860 cctttttatt tttagatagt tcatcacaag tagttttaca tactgaacaa caccaaattt 1920 ttaaaaatca tatttctagt aagcacttga catctagtaa gctctcttac tcctatcttt 1980 tgttcttgta gtcctatcaa aaaagtaaca gctttttctt ttgaaagaac tgaagctctc 2040 atggcacaga acagtatttg aggaacatga gggataccaa cagtaatacc agatgtagat 2100 aacaaacttc atgttactat tacttaagtc tgaaatatgt gggatgtcaa atcatacttc 2160 ccatactttg attagcatgt tttatgaact ccttctccca ttgtgctcca tcctattaca 2220 catgcatctt tcatgttaca agttaaatta cttacactct tccccttatc cttctaaatt 2280 aattctccaa agtcagagtg tagcttatct tttacttagg ctgtgcagta actgaaggtt 2340 tttttttttg ccatttgtct aagatgtcta gtatacaata tttctctttt ccttgccctg 2400 tgcagcctgc tgtcgtccac cccccaaaga aggttatatc ttaacagttg aagtgtacaa 2460 gctgtctgtg tattttgtgt agctatggag tttagatcga aattgccagg cacaaattta 2520 gtcttgtcat tttgtttaca catcagaaaa tctttttcat tttattaaac gtttcatgta 2580 actgcaccca agttttgcca agctggaaa 2609 // ID JV172719; SV 1; linear; mRNA; TSA; VRT; 1674 BP. XX AC JV172719; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15537.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-1674 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-1674 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; 4415fe2f13fb908ed9c8f957f9abe567. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..1674 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 1674 BP; 487 A; 378 C; 315 G; 494 T; 0 other; aaaagtgctg caggagtcaa tgcctgtatc tgacattttc ttgaaatgtt gctaatacag 60 agtaacaggc agcagtcctg tgctttgttc tttggaagag gtttaaaagt gagcatattt 120 atatgaaata cagtcacaga ttgtgttctc actctcgata cagtccccaa actgggcata 180 tttaagagtg aagaatactc aatttgttaa aattggtcaa aatcaagtca aggtttcatt 240 acatctttta ttaatggaaa ataaaagtgt gataattctt tttcagtact aaaagaaaaa 300 cttcttaaaa ttgcatatta aatagacttc atgattttaa tggcaccaag tttaatccag 360 ctctttcagg cattcatgta ggtatgataa atatgactgg aagcaaaata gagatattag 420 attgaatatc ttaaccctga gtggagacca aagaaaggaa tatatatcta taataaatcc 480 atttctagaa tcttgtttat gtctgggtcc aggttcttaa cttgctgtct aaagcagcta 540 aaagaatttg acaatttata ataccgcatt tcagtctgtc agtgttttat gattgagcag 600 taagtatcca caggaacttt gcttttgaga cctcagtttc aggtacctgc tgattctggc 660 caagagaagt tgtggattgt gcccccttgc cctgcacaca gtgctccagt ggcaccacca 720 ggttagaggc aaggcagggg gcatgcagca acctcgctgc tcattcattg taaggtgtaa 780 cacaagagaa caggtctctt acagcttcct cagcatcatc tctcctccaa acaaaaaatc 840 aagtgtgcaa gaatgttaca gtcaacaata cagagatcaa ggtcagacta gcttcaataa 900 gacttccaga agaaaatttt attcgacctt caactgctgg gtaaactctc ttcattctct 960 ggaggtagcg cgaaacaacc tcaacgtcag gttcaccttt actgtatccc agatttttgt 1020 ctttcagcat gctgtagcca tctcctccaa ataacatata ggatggcaga gtcacgttgt 1080 atatttcatc catctggagc gggacatagg ctgggactcg gcacgctgtg caaagaactt 1140 ccaagctaac aactctgctt cctggggctc tggagagatc atagaccaca tggatgcctc 1200 caacctgcag cagctctcca cttccttttc catatctcct cacactgtgc tcaaaagctt 1260 ctttcagtgt ggagcctttt aatgtcacca tatcaaaacg acctccaaat ggcagaacag 1320 acagcaaatc ttccacagta atgctaccat tagtgctctg ctcatcaatg ggtgaccgaa 1380 tcccacctcc gttcaggatg cacattgaaa cgtggttcca ggtcttctga tccggacgcc 1440 tgacattctc ataaagcaca gcatcacaaa gcaaattgcc catgttacat tctggaaacg 1500 gcatgcttgg cttgtaccat tcaggtaaac actagttttt ccaatctctt cagaataatt 1560 ccccaggttt tctctccatt tttccacttc ttccttaatg tgctcatctt caggaaagct 1620 gctgtccagc agaatggggt ttccaactgc ttcaactaca tttcctttct tgtc 1674 // ID JV172720; SV 1; linear; mRNA; TSA; VRT; 500 BP. XX AC JV172720; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15538.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-500 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-500 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; 1723a444ff27247446351eb07e451edd. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..500 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 500 BP; 92 A; 110 C; 151 G; 147 T; 0 other; agctgctcca ggcggtggca cgtgctgctc catgatctcc aggccatcca cagccggtgc 60 ctgtgccggc agccacgcag ggtgggacgg ttccactgca gtctgaggct ctggtctcat 120 cacgcgcatg ctcttcactg gctgcaggat atgagctgac gtgactgccg tgattgtgtt 180 tggagacgtg atggaaggat cgggttttcc tggaggaacc tgtctcatag acactgtcac 240 ttgtggctgt tgctggtggt tgttgaagga gtttgttctg cttggcactg cggcatcagg 300 tctgaaggat acatgttgcc gtggagatgt ttctattcct gggttttgta cagaatctct 360 gcgtgatggt gttgctgcct gccactgctg aacttgagga ttattcatgt catagagttc 420 catgtttagg ctatttctag atggagtcaa tagattttgt ggtggactgt ctgaaaaatc 480 attagcaaag gctggacctc 500 // ID JV172721; SV 1; linear; mRNA; TSA; VRT; 2531 BP. XX AC JV172721; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15539.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-2531 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-2531 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; 555e5a867ebae53cbbff921544c4a0e2. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..2531 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 2531 BP; 642 A; 593 C; 498 G; 798 T; 0 other; ctttatatag cattgcagtg cactgtgcaa acatattcca caagaaaaat gtgtttgctg 60 acagcaaaac cagctgtgac aaacgggtca gtaaaaaaaa acaaaccatg ccattaaaag 120 cttcgttctt caaacatgac ctttaatcct cctttcaggt atcttgcatt tcctcatgtc 180 caagtcttca gaaagaaatg tgccaagcaa gtatcaatgt atattgaact tcactcaaaa 240 cagcgttgcc aaatttgccc acaaacattt caaacccgtt gatcccagag cagtaatgac 300 acacaaacac aaagttgtca attacttcag aagttttggc acagtgagag taggaactgt 360 aatttcttta aaaattggca catagtttgg attgggttgg cttggacctt gatccaaagt 420 ttcaatgata gtctgcttca tatctctgct ggcatcgcct ctcactgtca gcaaagctgc 480 aatgtggtca tccctgatat ctgggtattt actgactaaa gttgaaactt ccaggtagag 540 cagtgaagga tcagtcagct tgataacctc tgcaatggct tcaatgatgt cacagagtcc 600 ttcagtgtcc tctccagagc cagctgcaag cttcttaaac aaaaatctga actgttctgc 660 ttctttgatc attctttctg caccctcttt tctctcttct gcattcttga aagatatacg 720 tttcagcatg atggctctga tgtattccac aaccactcgc cgatgggcct ccagagtcat 780 tgtctttttg taaggctttt taattcttgc aaagtcattg aaataatcct ctacagtgac 840 acagatagtc cccactgcat tagaccccat cagccacttc tttgtcatca gctcattcag 900 atggggctct aaatccatga agacttcatc tagcaggcta gagcagcctt ctttagcaat 960 gatgtctaaa gttgcatcca tgtttgcatg actgattgac aaggtgtctt ccatgtcact 1020 tttcaagtat tttcttttca gactgatgat ggattctttg aaggtttgac agttgttgat 1080 gactgcaatc atgtactgaa catagcactg aggatactga cgatttttaa gatgatcttc 1140 tttatagaac tgtgcttcat ctttgtacct ggttagaaat gaattcattt gctgaagaca 1200 tagaatgagt acctttgttt tcaaatcttc atttatctga gcagccacct gaagattctg 1260 ctcaaacatc tgaaaaacaa tagctgggag tgtagtctga tagtacccat cttgatctgc 1320 ttctggttca gtttctttta tccagtcttt tttatctgtc tccagtgctt ttcgcagcca 1380 gccaatgatg ttagaagtga gtgttgacat atacttgctg agaagctggt ctaccacatt 1440 ttgtgaaatc agagcatcca gagaatttac atccacttca ggagatagtt ctgaatttcc 1500 catcatctct gcactggtgt atgtattcaa aacccagctt agaaggctaa cgatctcatt 1560 tgcttccaga tcctctgcag caagctcctg cattcgggtg gccaaagctt gatggtacat 1620 gtttagcaac ctgttgaaaa tgtcataatg tggaggaaag cattgatcca gcagggtctt 1680 ggccacgagc aggtcatcaa ggacgtattt acggatgatt tcgagatgcc gcacaagcca 1740 cattttgtca gattctctgg tgtctgcctg agtgccttca atccgtgtgc tcacagttct 1800 ttccaaaata ttgaacatct tttctttcca cttctttggt ctgccaggag gtatgaatcc 1860 agtctgtttt ttcctgtcta acatgcgcct gtcaattttc tcctccctct caattatcct 1920 cacaacagag acaagcaagg ttggatctcg acgcactgta acaagagatc tttgaaccac 1980 catccaaagc tgcttggcca attcctcaga cagtttctgc atatccccaa agtatgtgtg 2040 gatgaggttc atgtcgtgtg tgtttttgct gtccatgcgg tactgctcat acatcaggtc 2100 atcacgagag cactccaaat ccatcagttt gcggtgagcc tgcagaagct ccccgcgctc 2160 aatcaggtcg tgggtctccc tgactatctc gggaactgaa aatatattct tgagattttc 2220 tacagcagct gccaattggc tgtgttgcac tacagcatcc ttaacgtcct tgaggttttc 2280 tatagtgttg atgctctgtc tccagtcctt attgacatct atcagagact gctggatgtc 2340 cttcacatca ttcagtgcat tgtgcagttg gcttaaacct gttcgtactc cgtctaactg 2400 tgactgtatt gctgccttga gtcgagcttc tactgaagcc ttcttgcgag cttccctcct 2460 gcgatactgt tccactttat ccagctgatc aggccgctgg ggcattcctg ctactctctg 2520 aacagctgtt g 2531 // ID JV172722; SV 1; linear; mRNA; TSA; VRT; 1735 BP. XX AC JV172722; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15540.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-1735 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-1735 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; 6786a60c08ac4106b799d5fa77f3c56c. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..1735 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 1735 BP; 506 A; 366 C; 348 G; 515 T; 0 other; gaacagcata aacaagagta tgtctaaaaa accacattcc tttagtatta agtaacagag 60 agagcagacc cccaacttgt tcaaggggaa catgcatcca ttggcaaagg ctttctgaag 120 aatgagagac tttggaacaa gatttgtaaa ggtaagggaa aaaagattta ctttatagaa 180 agaaaaatct gggggaagaa gaagaaaaaa gcattacttc attctgctgc tctgtgctat 240 tcttagatca ctgtcattag ttcttcccca aacttacaca ccccaggcaa aaaaatgggt 300 ttttagtaac ttgctgtaat actgccacca gatgcctttt agatgcaata aaaaataatc 360 caatgaatta cagaagagtt taaccacttt ataaatagaa aagtcttcat ttaccatgtt 420 tctttcaaca agaatatttt taatgggtga agtgtaattc agttagaaga aaatgtgggc 480 tcactcccac tttcctcaga gtgctctttc tgctggtctg ccactcctac accattataa 540 aattaaccca agtctcatca gtaatcacca gggatttgtt agaaatacac catccatttg 600 taaaaatgtg caggtcattt ctctagttgc tgaggggtac taaaagcttc ataaacgtta 660 gcagcaaaat ctttcacttg ttccatcatc aacaggtcct gaacaaagtg actgggtgtt 720 tcactgcata ctgaatggat ctgtccattt attattggaa ttatcttggc taaaggaaga 780 ctgacactgg aaagactatt tacagagttg ttttgagaaa ggtccttttc agtaggtcta 840 aaaaattctg ccatattgtc cagcagccga ctgaatcctc tatttaaaca tgtgctcaaa 900 actgtactga agtctggact ttctagcata tctctagttt cattcaataa tttaattgta 960 gcaatgtctc tttctgtgag tccacaggcc tggctagcca aagggttttc ttcatctggc 1020 atcagataat gacataaggg agaataagat gcaatctgat ccgaatcttt atgttccact 1080 acttccctga tatctttaag tttctgttcc agttccagaa gagacagggt ctgcttaagg 1140 gaaatacttc caaaaacttt atgcacagct tgtttaacaa tagttattaa ctcagtcagt 1200 ccatctccta aaaggtgctg aatgcttgat aaatattgct gctggacttc agggggtgct 1260 agtggtgtgg tgccgttctt gccgagcgcg gcgttatcca ggtagatgta gccgccgatg 1320 atgttcagct gcacccgcag gagaaccacc agcatgcagg tgctgtacac ggccacaatg 1380 ctgcgggtga aacttattat ctttaaatcc tcccagattt ctaacttgtt tgctggccta 1440 tttttaagaa gagatgtgag actctcagag tttaactgat gcattaaggc atccctcagt 1500 gttggaagca ttgacagtac tgtcatattg cacgtcctct gattgctctc aaaatggtac 1560 tgccttcgtg cctgggcaat gtactcagct gcctctcgct cctggatttc tctgattttc 1620 ttctgcccat attttcccag taaatagaca ccgccaagga aggtgccaag gaccaggcat 1680 ttcttcttgt gccgcttaag gaaactccag agcgaccgga gcatcctgcg agcct 1735 // ID JV172723; SV 1; linear; mRNA; TSA; VRT; 1270 BP. XX AC JV172723; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15541.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-1270 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-1270 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; 8ae3920b80d95704ccc10033b0ff9369. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..1270 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 1270 BP; 268 A; 286 C; 344 G; 372 T; 0 other; atttccgatt ttgaattcac agattgacag tagtcatggt caccaaacag ccgcaaactg 60 ggccgttttg tctttctctc ctcatgtcca ctggacagta cggtagtctt gttaaactgt 120 gtgtacagct cagactggtc tggacccttc ttggttgggt tatttcctgg agaaccggaa 180 gactcactac agcggggctt ttttgaaggt ggtacaacag tcttgcatga tgacttcagt 240 tttaggtgaa gtcctaaaag gattatcttg gttggcttta tgaggagggg tcgtaggtgg 300 agttaggcct gcagttccag agagttccac acttaaggtt tgttcaatag tcttgttctc 360 aaatggggaa cccttgggat catttggtga ctcgggtgtc aatggaagtg ataaacttgt 420 tggtttggcc tgcagatgat ttgtctgaga ctgcagatgg ggcttccttt tggaggtgca 480 tttctctttg ctgctgttcc tgttctctgc tggtttggtc tgaggaggat catcattcgt 540 agtcagatat ttgagaagtt cagagcaggg gcgtctctga ggcttttgct gttgacaaat 600 gctcttcgct ttattgctcc atgaattctc agtcttaaca accacagggc ttgttctgat 660 cctgtgatta gtgtttgcat ggttttgtgt gctgagacca ctgcattcat tgtaatttag 720 ctgagtgttg gctggagcca gcaagagctt cttaagtaga gacggctctt ctgcctcctg 780 ggtcggaggg gcgccgtcgg gcactgagga ggggctagcg gcattttcgt tggtcacatc 840 tccatctgtc agtgcatcaa aggaaggcaa tccatcctca tccacaggga tgctgtccag 900 cgtttctgtg agaactgcta gcaagtttgc ctcgctctct tcatctagtt tctcgaatat 960 attggcgggt tcattgctgt actgattgga gatgatctct gactggtcgc tgtaccactt 1020 gagtcccccc agaaagctgt ctgcatccag gtcgttcaca tctagttcag agaggtcaag 1080 ttctgggaga tctgggcaaa gaggctggtc ttcaccaacc agagcagcac actcgagatc 1140 gctccataca gagtcctggt tgcacatgtc ccacgccatc cagctgcgga gcgacggcag 1200 gaaagctggc aaactacagt ccagaggcag gcaggcagca gacactcatg caggcaacga 1260 gaccctctct 1270 // ID JV172724; SV 1; linear; mRNA; TSA; VRT; 1968 BP. XX AC JV172724; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15542.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-1968 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-1968 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; 94fcb12f1b31941754831e536c9a7f53. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..1968 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 1968 BP; 534 A; 484 C; 373 G; 577 T; 0 other; cttgagcttc tgaaaggtca aacttttatt tgcaagtatt tacttgtatg caacacatta 60 gaggacagct tgtaaccttg ggtcacacac agagaagcag ctgaagtatt gctactgtaa 120 acccacaaaa cacaggaaga gggctaagag gcagagagga gggcatgcac aaaatgcttc 180 tgaaatacaa aatgagacag ctatgagtgg tgcagctaac acaaataatc tagactagat 240 gacaggagtc tgagcttaga agaacttgct taaataaagg gggtttcaga atggcttaga 300 aagtacaaga gaagcacgag aaaaggtgaa gtactattta ttagaagtta ttctgctatg 360 ttttattcta tgaaattaat tttccagtat gaaagtattt acataagaca ctccacttag 420 cctctattga tattgccaaa gtcttataga aatagcacaa gtgaataaat tgagaacctc 480 cacagcaagg aaaattcata ccaacttggt tctcagctgt atgacatttg ctttatatag 540 aaagactaca agaacacaat ataaattagt tacaaaaagg tgatactgac agcgcagcaa 600 ctcaatttgc tgaacacaaa aaccacaagc agtggctatt acagccatgc agttttcatt 660 gtgaaaattt acatcttaga tgacatctgc tccaccttgc tttaagatgc ctgacattgt 720 actcctgttc ttggaccctc ctcatcttct tcatatgctt ctcctgcact gttacggtag 780 gtttgctcat ttggatcaaa atcttcaagg tctacctgat ccatctcatc tgtaaccata 840 acatcttctc gggaaggaag cagagcctcc agcagagaca gtttctccct tgggagccag 900 tagtgctctg gaaactggac caaaaactgt atgatcaggc tgcctttgtc cattggagat 960 ttgtagacag gcatcccttc attgtagata cattttaggt ccccatgttt tatcacttca 1020 cctggcctag tagatatgac aagaactcgg ttgtccagag tttcaattgt ctttctgaaa 1080 ccacataaag cctctgagag ttgaattctc atttttgtga ttaagtcatg ccctcgtctc 1140 tggaagacac tgtgatcctt ttggtcaagc acaattataa catcaccagg ctccaaatca 1200 ggctcctggt caccttctcc atgaaatact atcttctgac catctttcat acctttatca 1260 acatgaactt ctatgatctt tttctctctt acaaccttac agccattgca gttgtcacat 1320 ctgtcttttg gatttattct ttcaccttgg cctttgcatt ctgggcacac agtttggatt 1380 tgctgcacca tgccaggtcc aatctgctga actataactt gcatccctct tcctttacac 1440 acaggacatt tttctactgc ccctctcttt ccgccataac cttcacactt tgcacaaata 1500 acattctttt gcagtgccag tttccttgta atgccattat agaggtcttc aagagataca 1560 cctaactggt gcaccacatt tttgcctctt ctctctctat tcattcggcc tccaccacca 1620 aagaacatgt caaagatgtc catgggtgaa gagaagctgc cgccactcag gcctccttct 1680 ttaatagcct gctccccacc ctggtcatag aggtcccttt tctttgggtc cgacagaact 1740 tcatatgcct gggatataag tttaaaccgc tcgccctcac tggggttctt gtcgggatgg 1800 tacttcagcg ccagcttgcg gtaggcgcgc ttgatctcct cggaggaggc attgggcttc 1860 acctgcagaa tgtcgtagta ctccgtttcc ttcaccatgg tgggtgccgc tgcggttact 1920 ccgctgcaca aaacgccacc actaccgccg cccgctcccc gatccccc 1968 // ID JV172725; SV 1; linear; mRNA; TSA; VRT; 2657 BP. XX AC JV172725; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15543.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-2657 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-2657 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; 57258a4fe0b5b76fff2c44137fb97e6a. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..2657 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 2657 BP; 839 A; 491 C; 570 G; 757 T; 0 other; ggagcgtccg gcgggcgggg gcgcgggatg gaggtgatca ggagcaattt taaggataac 60 ctaaacaaag tgtacgaagc cattgaagag tcggacttcc tggccatcga tggagagttt 120 tcagggatca gtgatgggcc ttcagttagt acattaacaa atggctttga cactccagaa 180 gaaaggtatc agaaacttaa aaagcattcc atggattttt tgctctttca gtttggcctt 240 tgcactttta aatatgatga cacagaagaa aagtatataa tgaagtcatt taatttctat 300 atttttccaa aaccctttaa cagaaattca ccagatgtca agtttgtctg tcagagttca 360 agtatagatt ttttagcaaa ccaaggattt gattttaata aagtttttcg caacggaatt 420 ccatatttaa atcaggaaga agagagacag ctaagggaac agtatgatga aaaacgttct 480 caagccaatg gtgcaggatc tctgtcatac atttctccta attccacaaa gtgccctgta 540 acaattcctg aagatcagaa aaaatttgta gagaaagtgg tggagcagat agaagactta 600 ttaaagaatg aagaaagtga aagtttggaa ctggagccat gtacaggatt tcaaaggaaa 660 ttaatttatc agaccttgag ctggaagtat ccaaaaggta tccacgtgga aactctggag 720 tcagataaga aggagagata tattgttatt actaaggtgg atgaagagga acgaaaaaga 780 agagagcagc agaaacaagc aaaagagcag gaagaattga atgatgctgt aggattttcc 840 agagttgttc atgccattgc taattctggc aagcttgtta ttgggcacaa catgctgctg 900 gacgttatgc acagcataca tcagttctat tgccccctac ctgatgacct aagtgagttc 960 aaggaagtaa catcatgtgt ctttccccgg ttactggata ctaaactgat ggcaagtaca 1020 caacctttta aggagctcat taataataca tcacttgcag aactggaaaa acgtttaaaa 1080 gaggttccat tcagccctcc taaagttgaa agtgcagaag gatttccaag ttacgataca 1140 gcatctgaac aactccatga agcagggtat gatgcttaca ttactggact gtgcttcatt 1200 tccatggcta atttcctagg ttcattcctc agtcctccga aaaaccatgt gtctgctaga 1260 tcagaactca ttgaaccttt ttttaacaag ctatttctta tgagagtaat ggacatacca 1320 tatctcaatt tggaaggacc agacttgcag cccaaacgag atcatgttct tcatgttact 1380 tttcccaaag agtggaagac tagtgaccta taccagcttt ttagtgcctt tggtaacatt 1440 caggtttcat ggattgacga tacatcagca tttgtctcac tgagccagcc agagcaagta 1500 caaatagctg taaacaccag ccggtatgct gaaagttata ggatccagac atatgcagag 1560 tatgtggaga aaaaacatga agaaaaacag accaagagaa aatgtacaga agatagctgg 1620 aaggagatgg agaggaagag gttaaaaacc cagtgcacac cttacgtttc ccagagtcgg 1680 tactactgtg ttaacagttt tacaggtccc agtacagtgg gaaagagaag catgagtcct 1740 attgaggaag aaactgtttc tgatgatatg gaagagggag aaggccaaga tccagaaaat 1800 gatcagacag actcctgtgc agagtccctt ccagatggca agaagagagc caaaaagttg 1860 aaaaagatca agacagaaca agttccagca ggaagcctca caagtagttc cactggaatt 1920 tttgaggtcc ctgaaacatg gtaggaaaca actgccttaa aaagtggaat tgattgaaag 1980 cagttgagag aatacacctc ttggaagcca tactttattt aaataaagtg gtgttaacaa 2040 agcagtatgt gtcctgaaaa tcagtttaat tattttaaac tgtttcttga acaatcactg 2100 tcaattttac tcgtgtgtac atcaccttat atatgacttg ttgttgatcc tgtgaaatcc 2160 ttgctgttgt aactgatgtt aggtttaaga agcaagactc agtgtccttt ggtcacctcc 2220 tttggcatgc tggctgtgaa ctgtacaaga actggcactc tgtgattttg tgctaggctg 2280 tttcctttgc ttggggagtt accacagctc tcctcatatt taactgtttt ttcaggcagc 2340 ttcagtatgc tgtcagcatt ctggaaacag gtagaactgc agttttactt attgctttct 2400 acctgctact ttatctggga acattttttg aatttctgtt ctctaccctc atccccagtg 2460 caggtggtat tcatctaaat accagcatta cacataccta ccctttcaaa aaactgtaac 2520 ttaaaagttt ctccagcatt aatttcctgg tgggaggtag tttttctttg ttttcacatc 2580 tgttgttccc acttttaaat cctgattctg taaaaaatgt tttttggtaa atgtgataaa 2640 cctgctaact gcaccag 2657 // ID JV172726; SV 1; linear; mRNA; TSA; VRT; 1725 BP. XX AC JV172726; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15544.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-1725 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-1725 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; 8c6a16eb8d53a84a879bd1f51797ee35. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..1725 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 1725 BP; 499 A; 421 C; 386 G; 419 T; 0 other; caactgcagg acactaactc ttcattcttt ttagactgca gctttccaaa aaaagggaaa 60 caatgctctg actgcagcag taatgctact tgctcataaa aagttagatc taaaaagttt 120 tatataagcc caagtagttt aagtttacaa ctacagtcac gttcacaagt gagctatacc 180 agaacagacc ctggatagga agttacagga taaaccaagt cataatcaaa aatactgaca 240 agctttaaga gcaactctat cagaatctaa caactaaatg ccacaaaacc aaactaaggg 300 agaagaactc aacaaaagct cagggaaggt tccaaatata catacgaatt caatacagta 360 attgcacaaa aagaaacagg gtagtgttaa aggtttctga tcactgagct tggattttac 420 atgctgcaca catggtcgtt aaaataaacc tttaatgagc cagatcagga aggtttttga 480 gccaggatac ggagtgcaga gctattctac agaactacac aagatgtgca aaccacagat 540 tattaatatt aatcattctg tgaaagttaa ggtgaacata actggttcca gccaaggaac 600 tggttaacat ttttatatat atatattttt ctgccattcc cagattacac taaatcaaac 660 acattcaaca gataaactga tattagcctt ctaaaaaaac cttactcaaa tttaagtttt 720 acatgagaca actaaaaagt tataccaagg atcaacaaaa gctgaaatgg tgactttgtc 780 ttctgaaata caagcaatac acagaaaatg cataaggctt ttgattatca ctgcacggtt 840 taactgcaga agtcgacgtc taatgctgac ttctccaaga aggtgtgacc tggtcacctc 900 ccatctgtca tctgtcacct ttcactgctg acagatcttt gtctcaacca cgaaggagtt 960 ttcgaagtgt ctgattgagt gacagttctc cgctgcccgt ttctgcacac ccacggtttg 1020 gtctctgcgc tggagcctga aggtctcttt gcccacacag agctggtaga tgaagatgcc 1080 caggtcagag acgttatcga tctcctcggt caccaccatc tcctcacgca ccaggtacgt 1140 ctgcggcagg taggagccag tcgccagctt ggcaaagaga tccatcagat tccttggagg 1200 catgactatg gaagtgttca gcgggatcac gtagcagttc cccagctgca ggtccagata 1260 cgctgtcaaa agcctgtcga agtcgtgcac gatggcggcc gggtcgctgt cagagaactt 1320 gggcacgggc acgtcgatga tggcgatgtt gtcgtcctcg cggatgtcgg cctcctcggc 1380 gatgggcagg aagtacggct ccaccgcgcg ctcccgcgcc tcgttctcaa agtagcacat 1440 ctccccacgg tacaccttgt gctttggcat gaagtacttg tagatgcagg ctccacccac 1500 aacaactcct gccaagatga aggccaggcc cagcagagtc aagagacatc ttccagatga 1560 gttttcaccc ctgtgtgtgg caacttctgg gtccttgtcg gccacaagcg cctcggccgc 1620 ctcctttttg ggctcatcct tgagagcgaa gggcgagttg aaggcgatct tcaccatggc 1680 gccagtgctg ctgccgcgtc ccggagcggc agcggggaca gcgcg 1725 // ID JV172727; SV 1; linear; mRNA; TSA; VRT; 624 BP. XX AC JV172727; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15545.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-624 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-624 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; fe2bb8c6c7c44012e6a9a6a15351d9cb. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..624 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 624 BP; 179 A; 135 C; 143 G; 167 T; 0 other; ggaagggtcc agtttgaagt tcctgctatg tgtatagtcc aacttggagc agcaagtgca 60 tagtgtatat gccctgagaa ggcagcattc ctggatgctt caaactggaa agaccaatac 120 ccacaaaagc aatttattag taggtttctg acatgcgtat ctttaagaac atacatccat 180 cactttcaaa gacatggttt aggaaatagg agctattaca ggcttaagtt taggggcatg 240 tctctttcct tctttagctg tgggcttaaa attcaaagct tcagaagtct aatcttgtga 300 gagatcctga aagagaaaaa cctctgcaca tcgtggggct tcccataaca aaccctcttg 360 ggtctagatg gagcccagaa aggcagctca agtacatctg gacagtgttc acagagctgc 420 acatgccagg agcagctctg taaagtgatg ctgatggtcc agcagagaat tatccccgtg 480 tggtctatta cctctgatcc tactggactt gaactgacca atgtggagac cctgacatga 540 tgccagttgc agcagagtgc agatttctgg aaatcatttg tgtctgtaca ggacatagtc 600 aaataatcct tccagcacaa tcct 624 // ID JV172728; SV 1; linear; mRNA; TSA; VRT; 2117 BP. XX AC JV172728; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15546.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-2117 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-2117 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; 69873dcad4345ef86324f4163afa8f21. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..2117 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 2117 BP; 647 A; 504 C; 405 G; 561 T; 0 other; tacaatttgt ccctacaggt aagtatgggc caagctgtga tgagacagca atgcagcctg 60 cagctgaagt caatgagtgt gaggagagaa aacaacagaa tttgtgtgtc aggaaagaag 120 cagcatattt catttccaaa ctattatttc tgacctatta cttgctgtgc agattaattc 180 ccccagcggc attgcccctg tctctccaca catattcccc tgtttcttca caccggggca 240 gctcatcctc agacagaccc aaacttgccc atgagatgtt gctcctgtca catctcccag 300 tgaggttaac taccagccta tctggtcatc ctgcagtttg caactcactt tgatttccag 360 caggaattgt ttcctacaca aggtctgcag gggaacagtc actaccaatc tgagacagct 420 ttatactcag cagctgtggc catcagagca gacaggcagt aacacacggg acaagaaacg 480 aagccaagtt ccactggttt tactggaata atttgtatgc ttacatttgg taaatacgta 540 atcgcattac ttatgtggaa cttacacttt gaaagtctgc atcttcaact gacttttcct 600 aaaggaaaat gcttctgcat ttggtttttg atgaatgtgg aaaaaatatg tgtcctcagt 660 gatgaaaaaa gcaaaacaag tctccatcac agttgctgca aacgtggacc ctgcccccct 720 gccgccacca acatgcccta ccctgcctga ggcagtacaa ctgcaattca agaaccggac 780 aggatttgga aactttgtaa aacaaagtgt ggaacattat acaactaaag aaaaagagag 840 ggcctgagca caaggctttg cagagctgat ttgattaaaa taaaattaat tccaagttac 900 ttggatttaa attacagaaa ctaaacagag aagaccagtt tctgctatca gttacactgg 960 tttaaatcca gagcaattca tctgcatcag ggagatcact gtgagtttag agctttatat 1020 aaagaaagga gaattttatt caggacatca catcctaggt aagcatttta ctataccatt 1080 tcagttaatt tttccagcct ttaaaattct aacatgataa tccggggctt tccggaacca 1140 gcaggctagc tgtacttcct ggagctgtgc tacttggtgt gtgagaaaca gcacccatag 1200 cttgcttttg tacaaggtct tcctgccagc taatcaattt attgttcaat ttcccagtca 1260 gtgaacgatc tatggcctct cctatcaaca aggagggaag gaggttagag tttaggaggg 1320 gcacggctgc ccgaaaccac aaggtggaga attatgaaag ctttacacaa caaaagaaag 1380 aagacccgag acagagataa agagacagta accctcctct tggacaccca aacccccaat 1440 gcacaattgg aaagaaaaca attaaatctc tcctatcgcc ctctgacttt tacttttaga 1500 ttgctctcca ccaggagatc tatgaaatat cagaatgcag agctggtccc tgagttactg 1560 acagccctca ctgccttctc caccacactc acccttcctc tcccctgaac ataaacaaac 1620 cacagacctc tcaatttgtg tgcgagtaac ttgcacagta agtctctgag tggtaaaaat 1680 ctttactaga aatattccag ctactcatca gctagctgct gtgcagcact ctgcttcttg 1740 ccgaggaatt caagtggaag acaacaaaca agcttcaact cctgttttgc tctgtacatg 1800 acaacagtgc aactcctcat catgacacca cagggcagta tgctctaggt actctttagc 1860 tgtttcctct caaagatcac aagtttcatt taaatctttt taaggctttc ccccccttca 1920 gatcgcaggt ctggttttga tcatgatgat taacagaacc agtcagaacc tgtaatacac 1980 cagcagtttt cttgtctctt aatggtggaa aaatagtaaa ctgttgtcca ccaggctaat 2040 aaaaaaaaat aacgaaacca gaaaaaaaaa gcaagcaagg actttgcaac atgcacttgc 2100 atcacctcgc cttacct 2117 // ID JV172729; SV 1; linear; mRNA; TSA; VRT; 443 BP. XX AC JV172729; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15547.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-443 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-443 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; 69a1f3eae3a2045d9e2f72e6274cab7b. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..443 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 443 BP; 143 A; 79 C; 112 G; 109 T; 0 other; cagcaaatgt ggaatcaaga aaaaaaccac ctgaaaaagt tcaatgagct catggttgca 60 tacagagttc ggcctactgt tctgttgcct ttctggaatg tagcaggttt tgttttaggg 120 gctggaagtg ctttgcttgg gaagaagggt gcaatggctt gcacagtggc tgtggaagag 180 agtatatcag agcactacaa caaccagatc agaactctga tagaggagga tccagaaaag 240 tacaaagaac tactgcaggt cataaagcag ttcagggatg aggagcagga gcaccacgac 300 atcgggctgg aacacgatgc agaagctaca ccagcttatt ctgttttgaa gacagccata 360 caacttggat gcaaagctgc aatattttta tcagaaagaa tttagttata tttttcataa 420 tagctgtggc aataaactgt gac 443 // ID JV172730; SV 1; linear; mRNA; TSA; VRT; 780 BP. XX AC JV172730; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15548.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-780 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-780 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; 75927e81f6686722c97fd5b64f88175b. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..780 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 780 BP; 232 A; 165 C; 168 G; 215 T; 0 other; aaaccagatc atgagtagtg ctgcaaaagg atgtactgtt gcaaagtgcc ttaaacagct 60 ggaaagcctt gtgtgcaggc ctaggctttt agacacattt aaaaaccaat attaaagcca 120 caacagatac cagaaaggga aaaaaaaaag cagatttcat atattgctat gtgcatgaat 180 tgtcttcctt ggtagactac aacttccatt tgtaaaagta tgcagcttcc taaaatcaaa 240 gggacttgtc tattttgatt cacctttgta gagacaaaat ggaatacttt tttttcctgc 300 cttttcacac cagtcacgtg ttccagtttg ctctcatatg aagtgaagtg ccacaaacat 360 ctccagcaga aacatttccc aggaagcaga gctgccccaa gctgctgcag atgtctgcac 420 gttgggcatg tgagccaaag ttttcaggtt ccacaagggt gctgctgttg caatcctttg 480 gaagccatca attgtgcagt gacagcgggt ggtgagccaa gggttcttgc ccttgtcctg 540 atgtccctgc agtgtgtgct ctgcagggca ttgtgctggg ctgcacatgt gttctgacac 600 atgcctttcc aaaactcagt agagttttac cacacagaaa accaacagac actcatctgt 660 ggttagtaag gagacagaaa agaagcagca gtattactgt cttagcagcg ctggaaatgt 720 tacagccatt ttgaactaaa gaaaaattgt ccttttaaat cacattatgt taatagtcaa 780 // ID JV172731; SV 1; linear; mRNA; TSA; VRT; 1081 BP. XX AC JV172731; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15549.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-1081 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-1081 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; 5d8d0f6e045b3effac4137f17e8e3672. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..1081 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 1081 BP; 314 A; 258 C; 212 G; 297 T; 0 other; caggtgtgta agaacccaac acacaccacc tcagccactg tgaagagcaa acgggttcaa 60 agggcaaata ccaaaatacc agttctagtg cttactttac accagataca caaattgttc 120 aaacccctgc atgtttggta gatcaaatta ggttgaaatc ctcctgacct cactgcctgt 180 cacacacact ccaaccagca ggtaccagct cctagatgag gtgacagcag tgcatcacag 240 ccttgcttag gagcttgccc aggctctgct ttacttgctg gtcagaacct cctcctcaaa 300 gctctactta ccttgggctc actgaaaaag gataagtata atagtatata ggttaaacta 360 gcctttatta aaatacagaa ttatattaaa tttgacctca aaagaaactt cagagcacac 420 attaatcatc atatattgga ggtggcatgt caatgatctc atccagggta gcaaggaagt 480 cagcagttga ttgtagcaaa ttggattccc atgaaatctc ttccatcttc actggtgaag 540 aagccatgct cacacatctg tcatatgtcc tctcaaatac catgagggga acaccacaca 600 ggttgatgtt gcttagtttg tattcttcag gaagatcaaa actctcaaag tcttgaggat 660 ccaaaggaaa catattttct atttctggcc aatcttcttc aggcactgta tggcagcttt 720 ctaatccagt tttgttcaca gtgcaaggct gacttttctg ttttagctta tccatcttgc 780 tcgtgactcc ttcagtttta ttcacatttc caagagcctt tctgacagag caagatgtga 840 ctggagaagc actgattgct tttttaggaa gtggagtgtt aacttttctt tcagctaaga 900 cttttgaaga tcctgaaggg agcttcagct gactcttggg agcatgatgg tcactgttct 960 cctgatcaac atagatcaga gttgccatct tcggagtgat gaggctaccc tcagaaaacg 1020 acagcacagg gaaaaccaga gccacgaagt ccaaaccgct ctcaaccacc tcagagcacc 1080 c 1081 // ID JV172732; SV 1; linear; mRNA; TSA; VRT; 941 BP. XX AC JV172732; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15550.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-941 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-941 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; 9d4eb79d28f7e1436246f8c588916996. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..941 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 941 BP; 249 A; 227 C; 184 G; 281 T; 0 other; cttctgaatt tccttaaatt ttaatctaat ctttgattcc tttaaggtgg ggttaagctt 60 ctttattagt tccacagctg tatcttctaa cattatgcca ttgccatcaa catctgctgc 120 ttcgaataca gcttttaacc aggcaaaccg tggggtatta tggctgtttt ccatcaagtc 180 caggggttgt ttgctacgag aaactaagta ccttaatcct gatacccaaa tattggccac 240 atcagctgaa ttggcaacca agtcaaggga ctcatagttc tcaccgtgaa ttactgacag 300 cgcacagtct tcagaaatct gatctgcgag tccattattc ctgaatgtct ctgtgttctt 360 ccctagtctg atttctttta tagcagaaat atcaagcttg gctttgtcca gatccttctt 420 ggaaggctcc cagcgaagag cctgcaggtc aggatccaga gtaaaaaaac ggttataaat 480 ccgggaattt ggacgaactt tcttcaattc acacccagcc tgcataaagc tgatacagtc 540 gctggcactg cttattttct tctctgatgg catgctgctg aaggacactg ttttctttct 600 tccactattt ttggtttgaa ggatccaaac aataacaaag gcggaggctt taaagtcatg 660 cccgacctgt taatttcaca ttaaaggtgc taaacacccg gtgctgctcc gcaacaacct 720 gtactacagt ccgtctccaa acacaccttc tgttaatttg tgacactgca tattttaccg 780 ctcaagaact aagaaagcca gcgctgtaga agctatttac tctgccttcc aggtgcttca 840 tcaatgttaa ataagaacag atacgagatg ctatacaaaa ctttacaact cggcgggaag 900 ctgccccatg ggtcacgctg atccctctga gcgctggcgg g 941 // ID JV172733; SV 1; linear; mRNA; TSA; VRT; 718 BP. XX AC JV172733; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15551.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-718 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-718 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; b7108fca76448ad9fc7e64939f75fc35. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..718 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 718 BP; 242 A; 162 C; 115 G; 199 T; 0 other; acttcctcaa cctcatatat ttcttcttat atttcttctc tgcttcctga atgttattta 60 aagctcacat tttcatcaac tacaaaagat taaactaccc ttgctttatg tcacatcaca 120 gtaatacgcg aatactttca accttttcac acaaactctg aaaaacaaat acaattagga 180 attaaaatta aatcacagtt ctgaaaatgg acaaggaagc tctcaaactg tactttggga 240 gatacaaaag caagaagtgc tttatatcct gcaaatgatc aaggcatcct gagaaacttg 300 aagaaacatg gcagcaatgt aagcagataa agaaaccttg agttcaagaa agttttgcct 360 gattgtcatg gccaataagc aggctggagc cccagtgagg ctcccacagc agcagtcatc 420 actgctgcca cttaatgctg tgaattaagg cattcaattc cagaagtaaa acccctgtat 480 ttcaccaaac agagaggctg gacaggaaat gggaagtgct aataaaaagc tcaggttttt 540 aagtgtttcc tgttctcact agaaacactt tcttgattaa tcaatgtatg cctctgtgat 600 gcatgtctac atcgaccccc cattacaaaa cgaacagcaa acctcactaa aacattttca 660 actctgcaga tggccacaag aagcattaag tttcattact gatcctcctt gctatcac 718 // ID JV172734; SV 1; linear; mRNA; TSA; VRT; 925 BP. XX AC JV172734; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15552.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-925 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-925 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; b06a6587976c68419067508aa376cef1. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..925 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 925 BP; 206 A; 219 C; 219 G; 281 T; 0 other; tatgtattca gaaactgtgg aattaatcaa gtacactatg aaactgaaga attacttggc 60 cccagatgcc acggctgcag caaaaggctg gcagtgcttt gccttcggtg ccaagctctg 120 ctgtacctga ggctttttca aagtcccggt gtctgtcaca caaactgact catcgtggtg 180 gtctccttcc ccagagtcca actctgaatc ctttggagtg agattgtgga atgctgcttt 240 gttttctctc ccattgaacc ctttattctg taccagatat gaacgtgcat gttcaggaaa 300 attattgcac taaatttttt gtgtaggtgt agttaagtgc caaaatcacg gcaacctcga 360 gagaaggaat agaattctac gctccttagt actgcagtat gtcctatggg ctttaagagt 420 ttagaagttt tgcaattagt aacctactac aaggtagctg catcttcgta gagcttcctt 480 tgcgtcccag cgtgttttgt acttccagaa aagctttgct gcgtccggat tgacgaacgg 540 ggaacagact cttcaggtct gtcggagcat cctttttatg gaatcactgt gcaaggtcac 600 ctttctgtta gtctttgctg ttggagacag aactctgtac cctcaaactc cccgccgtgg 660 gcatgggaca ctgtcagctg tgtttccttt cctcctctga agtgcctcgc acacctctga 720 cgctgagaaa tcccttggta gaagttgcat tcgtgggtgg gtttgtgtgt agtgctgcac 780 tagccagcgt ggctgttctt ggcttgctcc tttgtgcaca gtcaccattg ctgtcagcag 840 gaatggtggc atctcgggga atttttttcc ttaactagag tcccacaaat gccttttggt 900 gtcacacgaa atcggcccct cgaaa 925 // ID JV172735; SV 1; linear; mRNA; TSA; VRT; 1701 BP. XX AC JV172735; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15553.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-1701 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-1701 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; de46eb8448bd63992e4394e4d4c2d035. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..1701 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 1701 BP; 446 A; 388 C; 411 G; 456 T; 0 other; aagcaatact ttaaatgcca ctagcaccat caaagttcaa gtattggaaa gatactctgt 60 aattatgcaa ttagcaccac tgtactttga gtggaattga aagtacctca gatcatatgg 120 agaagttcct acaaaagatg tggatcactc ttgatttagt gtatgaggta gtttaaacct 180 ttggaagtca tggatttaaa cttcctctgt ggaagatatt caaaggccac aaatggtgca 240 aactttcatg actttttatt ttgttttttt ttctttacaa aggttgacat ttcccaaaac 300 aaggtgttaa atcttgaaag acttccaagt ccatttgggg ctgtattaaa tttcattgca 360 caatgctcca atcaattctt ctccttctct ttcccagagt ttaagcaagt agatgaacag 420 aagaaatgga aggagtcagc tttcattata aaagaaatga caagagaata atttgggaga 480 ggctttaagt taattttagt tcattcattt aaaacagact gggccaatgt ccaaaccgaa 540 ttcttggtca gcgccgccaa tatccaaagg tgcaatgtca aggatgggca agcgggatgg 600 cttatttgtt ctgtattcaa tgattgtttt gccccattcg ttgttctttc tagagcagcc 660 atcctcaaga acactgaaag tgaatctgct gttgccttca gctcgtagct caacgtcgtt 720 ggatccctgc agcacaacag ccttcttaag gttgccagtt tctgcatcca tgtaggcaat 780 gctgttcttg cagtggtagg tgatgttctg ggaggcatgg ttggccagca gacgcatgaa 840 ggcgagttgg gtggccatat ccttggaggt cactccttca ctgttgtatt caaactggct 900 gccaccattg atagtttcac caaaccatat gtgctgcttc ttgtccttgg gattcttgtt 960 gatataccag ttcttagcag gaatattgtc agggttagca tagatgcaag tctcaccagt 1020 ggaaaaatca cagtatgctc taatggcatc tgcagtgcag ccttggttgg ggtcaatcca 1080 gtagaagccg ctgctccatt ctgggtggct aagtctgagg tcacggcagg tgcgagctgg 1140 gttctttttg gagccttctg gggtcagcag ggtctcaatt tggttgttca gtgttttcag 1200 agtggcatca acttcataat ccttgggtct gagagaaggc tgatcagccc ggtagtattc 1260 tgcatcaaag ccaacttcat atccaccacc attgggacca ggggggccag ggggaccagg 1320 agggccagga ggaccagcag gaccttggtg accatgagag ccacgcacac cagcagggcc 1380 aataggtcca gggagaccat tgcgaccatc tttaccagga ggaccagaag gaccaggtgg 1440 accccttggg ccagcagggc caatgttacc aggaggacct tgatcaccat gttggccagc 1500 aagaccagga agaccctgca atccattgtg tcccttcaaa ccaggcagac ctcttggccc 1560 cttatcacca ggcacacctt tctcaccacg gggaccttgt gggccagcaa gacctcttgg 1620 accaaaagca ccagcaggac cgacagcacc agcaggacca ggttcaccac ggtttccagg 1680 ctttccagaa ggaccaactt g 1701 // ID JV172736; SV 1; linear; mRNA; TSA; VRT; 1904 BP. XX AC JV172736; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15554.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-1904 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-1904 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; bb666524f3c22c088744feff1094680a. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..1904 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 1904 BP; 428 A; 458 C; 417 G; 601 T; 0 other; attattagtg gatagcagag atggttcttc tatcaggctg tccttagatc cattctgcct 60 ctgttgagtc atgtggatgc tgggaacttt cccatctgaa gatcgtgtaa caggcagtgg 120 agggaccaga tcagttttga cattcacttc agacaggaca gatctctccc catcggagca 180 ctgggaccgc cggtactgcc ggtagctgcg aggggaatgc gagtgccgga tgcggatggg 240 atcgccttga gtctctactt tagtgtatgg aatttctttc aattgctcct cagataggcc 300 agatggatcc acaagctcct tctgaatatg tttccacagt tcttctttag cttgtacatc 360 tgggcttctc gatcgagatc tgtgcctgga tcgccggtag tttggatctg cctgggtttt 420 ccccttctgc cgccgcagca cagcttccca ctgaggagcc gagtcaacca tatcattctc 480 ctgccgcaat ctgtttctct tcttgcgatg ctctctgttg gaattttcgg attcactgcc 540 actgctggtg ttacaacggg accgtgacct cctccgaact ggctgcccag actcattctc 600 actgccacca gatgggttcc ttcggcgaga gtaaggaaac tttggtgatt tattgcggtc 660 actggcagaa ttatacagtc cactttgtgg gccattttcc tcccacggag cgcttgtttt 720 acttctttgt gtttctggac tgttttcgtt tttcatcttt ttaaagcttt ttactggaga 780 aggtgcaata attttggtag ttccttcatt ttccccattt gttgtaatct ggctcatgtt 840 cttagaacct gtctgttgtg ctcttttggg gtaagtcttg ctgcgacttc tttcaatgct 900 ctggtcaggc cgcggaagct gcacagaggg gtctctggtc attcgcaaag atgtttttcc 960 actgtaccga tgtttataac ctatggatcc aaacttgctg acttttcttg acagagagtt 1020 tgattcattc tctggcaccc tgaaaaatgt atgatgctct acacaacatt tccagagatg 1080 tttgcatgtg accttgttac gcgcttcaaa aaagaaggaa gtttcattgc aatcttttcc 1140 caggactcga agttcaaact gtgtttcctt gaagtgaact ttcgtaattc taggccagaa 1200 atactttcct acttgttttt tattcttgta gacaacaact cctatgggtg ttaatcctag 1260 aaagtattca gatttgtttt caccataaac aggatggaga tccaccccat acatttccag 1320 agatttggcc acacctaagt agttcacttc tgcctcagca ggaacttgac ccatcagagt 1380 cttgtgtatc ctctctatgg catcctccag ctcttccttc tggtcaggaa cgaagcggta 1440 ctcggagaca taccctgcag tgtgcttgta tgggtcatag tcccccagct cagactgaat 1500 tatataggct cccagctgtg ctgcagtgtt gattggacaa ggcaaacggc cctgtagaac 1560 atcttgcttt acctgcagga aaaactgata ccttgttatt tcttccttta gtttacatgg 1620 atcttctgca taaaatttaa tgccaaaata cagagtgtat ggtggtccag tgtttatcaa 1680 ctctttatgt tcagcgaggg tctttgcggg atccagccag tacgtttgat gacttcggtc 1740 acagtagcgc agcccaaagt aatctatttc caccaggttt aagtgacgaa atacgtagcc 1800 caggacaacc gaccccttcg ttgacttctt aggtaacttc atgactcaag acactaaatc 1860 tcccaaggca aaatactatt tcctaacctc cactatatag gcag 1904 // ID JV172737; SV 1; linear; mRNA; TSA; VRT; 736 BP. XX AC JV172737; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15555.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-736 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-736 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; 6279c30271358cc13fc85d712cd66628. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..736 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 736 BP; 236 A; 151 C; 164 G; 185 T; 0 other; agtgagctgc aaaggtattg acccttctag tggaaattgt ccataaatct ccactgaagc 60 ttgctttcag tcaaaatgca gatttgggac tgtcctagaa attttgttgg gtatcaaatt 120 gaaaacctag gatttcatct gctctggtgc accacaaagt cacctggaca gtgctgtcac 180 agaagagagt gagactggag agggattaac cccatcctct catgaaacac cctgccatta 240 gaccacctca cctgcatggg caggctgagc ccctgccctc caaagcccag aattcctctt 300 gaggcttttt ttgtttcagt tgtaaaagca gaaggaatta atagatgttt ttgtggggga 360 gaagtattgt catgcacact gggacaactt ataaagttac agaaagcctg ccaatatcat 420 ctgaggtttg tttgtacaac atgctaaaag gaaacaaaca ctggttatct gagaagcact 480 gggaaaaatc cacagttata taaatgaggg aggggaaaga aaattgtggt ggaagaaacg 540 attttacagc tcctaacaag atatctaaga cagtcttaaa ctggaataaa gggaataaaa 600 cacttaaaca cttctaaatc cttgtctagc attcggggtc tgggactatg tttccaggct 660 ggctaaggaa tagacaaggg gaaaaaacca acaaatactg ccaactcatc tttgagcctc 720 atccacagag ggcacc 736 // ID JV172738; SV 1; linear; mRNA; TSA; VRT; 857 BP. XX AC JV172738; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15556.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-857 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-857 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; 0f62669d7f5815f80982bb584688f89c. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..857 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 857 BP; 275 A; 146 C; 132 G; 304 T; 0 other; agcgttaggt tagtcttaaa tgtcaactgc cacactgaaa tagtatatcc ccaacatgat 60 cccatgcttc cttttttaag catgcatttg tttaactgct tagctgataa attttcatat 120 tgatacactt cgttgaatca gtattttact tggcatgcta cagctttatt aaagtgcctt 180 gtgatgattt tgctaaaatt gtgaaagaag taatttttca atagcagact tggaagctgg 240 aaaatttcag tatcattcag caaaaaaata tgctgaatga cttattagat ttagtgtgtt 300 atgaagacta ttttttcagc tcaatctact gatttattct cagcattaac ttctatagat 360 gactatgtca aattggcaaa caatattttc actagtatta aacaaaagtc cattaaaatc 420 ttcataaaaa cagaacataa aaaacatctc taagcaaatt atttatgctg taaaaaatat 480 ggtataaaaa gagctaaaaa aaacattgaa cctattcaca gtatatgttt aaagttacag 540 cattatagta caatgttgtg tgtttttttc aggtgacctg tatgattcca ccagttctga 600 tattttgtgt gccacaacag gctcaaagtt caaattgctg ttaccttcaa gtaggatttc 660 agatatgatg attcagttgt cttctctttt tttatcccca gctttacaaa cttttggcat 720 ggtatcaaaa cgtaaaatgt ttccaaagcc attctcgaac cacatttaga aaacatggac 780 agagtggcgt tcaaggattc tttttttatg tgttactact aaagggtgcg acctttctat 840 tttaccttgc cctgctc 857 // ID JV172739; SV 1; linear; mRNA; TSA; VRT; 1059 BP. XX AC JV172739; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15557.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-1059 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-1059 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; 17647ce1120a536e7aab7bd334463a03. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..1059 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 1059 BP; 315 A; 217 C; 229 G; 298 T; 0 other; ttgcctgggc agcatctgta atctttgtta tgagcatgaa atcagtacac gagaggaagg 60 gtgtgttata tacatggatg tacaggtctg tactggcaga ccatatatat cttcaaatgg 120 acatatgaca tttgtcagct gtggcaactg cattgccttg gatattgaaa cagtattgtt 180 gaaaatgttt tatgtttgag gggagcttta aatgaatcta tcaaaagcag atgccagcag 240 tgatgtacat gtctgaagga ctaggttgga acggggctca tttacatcag gtacagtttg 300 agagtaatac gaaagttcca ttttggaatt ttcctgctga cctaagttct atctgttctt 360 ttgaagaaac attttggaaa gggtaaaaat tttagactga gtatgccaca gcagtagcag 420 tttaaaacca gcaaatcatc taaccctcca acaaaaaact tgcttatgaa aaagttagca 480 tctcccccca ccccccaaat atttattttt tacaaagttt ttgagattac tattttttaa 540 gtcttggcag gtgagaccaa gttcaggtca tcatgcagaa caggtgcaga acaccccaaa 600 gcacctcaca aaccacaaca gacaagaggt cttcagggtg tgtcagatca caaatgaata 660 ggcccagtat tcaggtaccc acagatgctc ctgctctgac cctgaaatca tctcttagaa 720 actccaggaa gctaaaagag ctgaagggag acttcagtcc ctctgaaaat ggactcagct 780 cggtaggctg actgggagcc ttgcagtttg catttggaac ccaatagcca ggatctgtca 840 actgaactta gaggtttttg cagacacagt ttcagttgta gaactcctgg agcacggctc 900 tgaggaacaa aagtcttaag tttatctctg agcacttctc ttagcagctt ccctgcttgg 960 tgcattttcc ttctctaagg aaaccttcaa aaattcctcc tacagggaaa acctttaata 1020 cttcaggcta atggggaggg ctgaggtctt aagatagct 1059 // ID JV172740; SV 1; linear; mRNA; TSA; VRT; 570 BP. XX AC JV172740; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15558.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-570 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-570 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; 241b1394b5ff115e578c1aaba6f2c2f6. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..570 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 570 BP; 101 A; 142 C; 166 G; 161 T; 0 other; tctttgtcgc cgcttttggt gctgttgtct gtgtggctgt tggggttgtt gctgaggtac 60 attttgtcca tggccttgag cgcctcggtg agatagttct gcagggcggt gacggcagca 120 cacaccgccg ggctcccaaa gccgtgcgag atgaggttga agtgggtcag gcagctctgg 180 atgcccggct ccaaaatggg gttgggccgc gagttcccca ggggagatcg gtcctgagcc 240 agcaggtcgg tgaactcttt acagatctgt tttgtagcta gaagcatgtt ttttcttgtg 300 acttgctcgt ttggatcgga atgttgtcgg ttgagaaatt cagctactgc tttggcagga 360 aattctgtct cacaaacgta cccaaaatct ctagctagat gtactgcttc tccctccacg 420 agcgaggtga gcaaggtaac gttagcagct ttacgcctcc cagctggcag gtttagtcct 480 attttgtcca gtttttccct cagagatctc cctccgtttt tagactttgc cctccggagc 540 actccgccca gcagggaggc gttgaggcac 570 // ID JV172741; SV 1; linear; mRNA; TSA; VRT; 2935 BP. XX AC JV172741; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15559.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-2935 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-2935 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; a5daee4844b4acf0fe8caa09c3b8f9ba. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..2935 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 2935 BP; 727 A; 684 C; 716 G; 808 T; 0 other; gtgaaagagg atattgcaac acactgtaac aggaaatagt ctggtttgtc tttctagatt 60 gtgttcccag acaaatacag gaaaaaaacc ctgtagttca tttctgcttt gatcacactc 120 agagaagtga tagtggtagc tgtgtcagac gctccgaaag gaattgaggt tgtaaaccac 180 actggccttc aagagggttt agacagatct ggatcttgga gaatcatttc cctgcactgg 240 cacggacttt caacaaaacg gattgaactc tcgtgctaat gaacgtgcag ctcagttttg 300 ggaatgtaaa tcagctggca aagcacctga caaatcaagt gtcttatcct aacgtaatgg 360 ctgactaaat acacattcct gtgttggaga tttatataat ccttcagagc accctgagag 420 taccagagcc ttggcagaca gaggaaaacc tacgaaagag gatggacaag ctgcagagat 480 tgctccagaa caagatcctg atcctgacaa tttgtgctgc tgggattgga ggcaccttcc 540 agtatgggta caacatctcc atcatcaatg ccccagcctc atacatccag gtgttcatga 600 acacgacctg gctggagcgc atgggggttc ccctggagag caacatggtg ctgctgctct 660 ggtccttcac tgtctctgcc taccctctgg gaggcctcgc tggggctgtg gctgctggcc 720 ccatggccat catgctgggc aggaagatgt ccctgctgct gaacaatggc tttgtgatca 780 tagctgcagc cttgtctggg tgcagcagga tggccaagtc ctttgaaatg atcatgctca 840 gcagatttct tactggtgtg aatgcaggtg tgagcatgaa cattcagccc atgtacctgg 900 cagagagtgc cccaaagaag ctcagaggag ctgtggcctt gacctctgca tcatttacag 960 ccctggggct ggtgctgggg caggttgttg ggctcaggga gctcctggga ggggaggaga 1020 gctggccatt ccttttagca agcaatgtgg ttcctgccct gatccagctc acagctctgc 1080 cttggttccc tgaaagtccc agatatctcc tgattgaccg tggagacaaa gaatcctgca 1140 tctctgccct gcagaagctc agaggcacca atgacctgag tgcagagctg gaggagatgc 1200 tggcagagca ggctgcagtg aaaggccaga gagcaaagaa cccctgggag ctgttccaga 1260 acccagggca gcgctggcag ctggtgagcg tcgtggtgct gagcagcgcc atgcagctct 1320 gcggcaacga ctcgatgtat ttttatgcag cttatgtgtt ccaagaggct ggaattcccg 1380 aggacaaaat cccctatgtt gtaatcggca cgggaagctg tgagctgatc acatctgtca 1440 cttgtaacat gatcatagac tatgctggtc ggaggccgct gctgctgggg ggatacatct 1500 tcatggcagc ctgggccatc gtcttcatgg tcgccctgag ccagcagact cagattagct 1560 ggatgcctta tctcagcatg gcctgcattt tcgcctatat cctgagcttt ggaatcggac 1620 cagctggtgt aacaggagtt ctgcccacag aggtttttga tcaaatgtcc cgaccagctg 1680 cttacatgat ctgtggctcc ctgctctggt tcaacctgtt tgtggtggga acagcctttc 1740 ccttcattgt gaaaagtcta gcacatttct gctacatccc attccttgtg gtctgtgtct 1800 gcactgccct ctacgtttgg tttttccttc ctgagacaaa gggaaaatcc ttcctggaaa 1860 tctcggagga gtttgggaaa aggaacttca aaactaagac ccgtggaggt ttctataaag 1920 gccctgagga gatcaaaacc acctcattgt agcagaagaa cggaagatgc tatctggggg 1980 aattctgcag tgaattcagc agtggctctg tgcccttgca gggacacaaa gagagaagtt 2040 agagacaatc tattactctt aggttcttaa gttcaccttg aaaacataca cttgaaccta 2100 taaatccaag caaaagttca ataatctgtt ctcagctttt agtagtaaca catgcatatt 2160 ttagaatcca tatcagaatg acagaatgat tccttactct cttatcatca tacaacacca 2220 tgtaatgctt tagaaaactt actcagaatt tcttctacag taacttccat ctcagaagtc 2280 cttctttcct tgcccctgaa tctgggcttt ctaacacaga aattaatgcg attaaattct 2340 ggtttcagac accagatgaa attttcagta ccttgtcttg gtgctcccgt tgtttctgtt 2400 attaagtgat ttcaaattga tccctacttg ttaagcaata gtgagcagtt aattattttc 2460 agctataaaa acatgtgaca gatggattag aaagaaagct tctagtactt tgctaagtgg 2520 cttattatac aacagacttt tgggcattgt tttgcagact atttattctg gattggtttt 2580 cttcatggct tgtttgctgt cttccagtcc tacgttgtaa aggacaagta attctctaat 2640 ttgttctgct cccatggatg gtgctggtgc atcttgtagg gttctgcacc tgtgctgatg 2700 ttaaacgtgg tgagagcctg gcttgtgttg ggtgtgcatc tgcaggtcac accccagtgt 2760 tctctgcagc tctctccaca gagctcattg gcagagccag atgtgagatt gattctttct 2820 ggttaacctg acacagaaca gggcaacact cctcactgaa cgtggccttg cacaggcact 2880 ggcctgttaa gtttctccca gtttcttctc aaagtcaaaa tctcctaagt ctcaa 2935 // ID JV172742; SV 1; linear; mRNA; TSA; VRT; 504 BP. XX AC JV172742; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15560.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-504 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-504 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; a72afd609f56de0401d5d12b75dd2214. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..504 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 504 BP; 154 A; 87 C; 78 G; 185 T; 0 other; tggtctgtag tctctagtta gaaactttta cataacttaa ataaaaaaaa atttgggcac 60 atactgtgtg aaaatacttt tctaaacttc tctgaaaacc atgggtcaaa tagtggagct 120 gctgttacaa ataatttcca atatacctct gatgaacaag gttatcttca accctttccg 180 ctgctgtaga atagttagat ttcagctcaa actgtaccac tttgacatgc ttctgttacc 240 ttatttgtgt catcttgagt aaagccattg ctgttaataa taattaattt tttgtttgaa 300 aaatccttgt agaaatccac aactaatgga acgcatcaga agactatcag atttggcatg 360 attttctttt ttcccccttg aagatggagt tgctttggac acagtgtcag aatctcttaa 420 gtaatatgtg ataaagaaca tatgttctct taatgtcatt ttattcagaa ctacaaatca 480 aggttttttt tcttcttctt tatg 504 // ID JV172743; SV 1; linear; mRNA; TSA; VRT; 3781 BP. XX AC JV172743; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15561.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-3781 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-3781 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; b373b9cd50351dc0b4e2a3522592ba88. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..3781 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 3781 BP; 1254 A; 740 C; 691 G; 1096 T; 0 other; ccaaaacaag gaacaaatga ccaaacaaaa tgccccttcc aaaacccaaa tcccatcatt 60 cactggctag aaatggtact tttgaggact attagcatga aatctttaac ctaaaatatc 120 agaaaccttg acattagaat acaatattta gtaaactgtg tataaggtac taaaccaacc 180 acactctata acaggttata cacattaata ttccacatcc acaggtgtta aataaattca 240 caatttaaat gctatttcca cagaccagaa caaaaccagc tatgtaacag aatctcagat 300 acagactgat tagagttcac cttactcatt gagtttattt tctttaaaaa aagacaatac 360 aagacgtctg ttttcaaatc agttaaaaaa tgtgaacaag tttccttaag aaatagaaca 420 atctttattt ttttagagca caggttaaac agattgacag ttccctacgg agcaatacat 480 acaggaaaac tagtggtttt ataacaacag gaagtcaggt gaaactgatg ttttttgaac 540 cagttacctg cacatcagtc taggagtact taaaactctg agccaatgta cttacaggtt 600 tttgcaatgg tatttctagt gctgatttta ggaagaagtt tgcatgaacc ttctatttta 660 tcatttggaa actgtgtaca gttcaaaaat ttgcaaggtc agaagaatag tgtgatgaat 720 actccttaac agagatgcat gtttaactgg tgccactgaa catcactcac aaaaaaaaaa 780 agctaaaaat ctatatgaac ttctgcattt gaggatatat taatatgaaa gtcattagat 840 ccatttttta aaattaaaat ggtaagtctt gaagcttgtt tcatgattaa acttatagca 900 gttccccact ttcattaaaa tgcatttcag taactgatgc aaaattcaag ctgtagacta 960 caagctaaag taagcattat ccacccatac atgcttcctt ggctagtgtc aagagtaaac 1020 tgtcttaaca aaagaaaaaa ccaaaccaaa ccattactga aagaagtgta ttttatgatt 1080 tgtatacaaa catgccacag acatctctac aaccctagag aacactaata aaacactaga 1140 gaagctttga tgcaggctaa actcattcta aatggggaga caatgttatg ttcattaaat 1200 aactagctta ggcagctcat gttatgacat atgcaaaaaa gccacaatta tctaaaagtc 1260 taaaagactt tttttttcca tgcagtaaga atatgcacaa agagcccaga gcaaagttgt 1320 gcatcaaggg ttagtctcta cagagctgca gttaaagaac aatccagttg cactgcactt 1380 ttttaaccta cttattcttt tcatacagca aggaaaaaca ggtgttgtgg gtccatctct 1440 tgtttggctt ttgcattctt aacatcaata aatgctacac cgcaaacaac ccaacacaaa 1500 cattcaacat tcagagtgcc aatggcgggc agttacaagg tgaactttga ctggcagaga 1560 accattcaag gtgaagattt aaaaacagct caagctgcaa caacagatac tggctcatta 1620 aatgaaagca tctttaaaca aggtcattca aagcaacaag acagaccagt tctgtgcaga 1680 gtatggtatg aagttaagtg cactttaaag ttctggaata tttagaaagg ttattccctt 1740 taaactgatg ccagcaaaaa aaagcttgca ttaatttagc agaagtctgc cttaggtgag 1800 tattttagat gattgccaag gtataataaa gaattcagtg cctaacaggt tttttttgaa 1860 agcatctgga aatggcactg aagtcttccc atatattcac catttggcaa attacccatt 1920 ttgtttgtac agccacggaa taggaatgat tcctgaaatt acaccaaggc aggagtaaat 1980 tactgaaatc ctaacaaagg caagtaagtt actgctgcca cttccagaga tcacttaatc 2040 accagcctga agttcaatcc tatggaaaat gaagttgcta ttgggcatta gacaatcctt 2100 gttaaatact gtacaagtca acagagtgac taatgctgcc agcttaaccc acaattacaa 2160 caacaactaa ggaacgcaga agagagaagc aagtacaaat tctatgctaa tctgggagat 2220 gcccaatgca catcagttca gaatgtgtta ttgtttcagg ctagtatttg taaaaagcag 2280 aaataaatcc taaatgcttt aggacttttg caagaaaaaa tccttagcct agcaattcat 2340 ccaggatttg acatcttcaa gacagctatg aaacccacat ggtcttctta gggcgggaaa 2400 acaaagtgta attctgctcc atctgagata aacattctcc ctttattctc aactccaatt 2460 agctgtggct agtaattact cctaagtttt gggtcttttt tggacttcag aacttgcact 2520 tgctttgttt agagtgaaat cataacagga atcacgctta gattcacaaa gtttgatatc 2580 cagcatagct ttttcttctg ccaattatgt aagcaaccac tataatggca atcaagacag 2640 caagtgcagc accaactaca attgggatta gaatgctgtc atcatccagc gaacactcct 2700 gggctgtagc aaacttattt gcctccacaa ggaatggctg aatccataga ttaaaagtat 2760 gaacttgaac attttcatta atctgaaggg tttgctcttt tcggcacatg taagagctac 2820 caaggaaagc atcccacttg cttaagttgt tgttatctgc acttgaaatg acagaaccat 2880 tcagacggtt gagcagagta acattcacct ctctcagata aaatttctgt acacttgcac 2940 tcgcattttt aacagcaaat gtgaaaccaa tcagtgtgct atttccatca ttcaatttca 3000 gagtggctgt tgtgttacca caggcaccat ctgcgacagt tgtctttgga ttgatgttga 3060 tcagaagagg cttgtcttgg gaaacattca gttgcagccc cacagatgcc aggaaacacg 3120 ttttatttcc acttttaaga gaatagtttc ctgtgtctgg attctccaca ggcttgggag 3180 gagttggagc aggaggtgca gcagtggtag gtgcagtagt tgcattggca ctagtaggtg 3240 gaacagtagg tgcagaagta ggtctatcag caggacatct agtctctttt ttactgactg 3300 tgccattctg aacaaaagcc tgcacagtaa cattccagaa aatctgcgtt atattttctg 3360 cttcaataac gaaggaattg tgacacacga agacagtgtt cagctgaact ggacctgcag 3420 gatccttcat aaaaatatta actggtcctt ttctcttagc gtcaggaaat acagctgtgt 3480 cattggtgtt gtaggtcagt gtcatgaagt ctccctggta agtttcattg ttttttgtga 3540 tgttaatgct ccaagaatga ccttctccaa actgcactgc cacaagggca gcctgtgtgt 3600 cattgccaca gacgcttcca ttgtgtgtcg cactggatga caaattcagg gttgtggttt 3660 tataatcacc attgtttgat tcatatgtta tcaagaacct catcatccaa tttgcataca 3720 ggcatgtagc attggaagca tcctttatat ctacttcaac tgcataggac tggaaaaaac 3780 c 3781 // ID JV172744; SV 1; linear; mRNA; TSA; VRT; 1434 BP. XX AC JV172744; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15562.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-1434 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-1434 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; 4aafd438818054fa4de11003e4b98ba6. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..1434 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 1434 BP; 368 A; 356 C; 358 G; 352 T; 0 other; ctggagtgga gagtggcaga ctggagcaga gggttggtct gagatcacgg tcggctgcta 60 agagggaaag taaatgtggt atttattccc ctcacgtgtg actctcctgc ccaggttatt 120 gggggctaat aagcaattgt gaaccatttc ttcattgctt agcttctgtg tgtgctccct 180 ttctggtggt cacataaggg aaccaccttg ggccaggaac aggccatctc cagacaccca 240 gttctagaca gctgccaatc aaccagcgct acgtgctaca agtcatgggc tgcacaggga 300 ccaccctgcc ctcctgctct gaaatccctt tatggccatt cttcctaact cagagggaca 360 atttgtaggt agctggccag aatggattcc tggaaggagc tgctgaagca aaccaaggag 420 gagatcatac aaacaaccat gacatgctgg tcacactcaa tctccccacc aagctggggc 480 ctgtctgggt acaaagccaa gcgtagcaga ttcccactct gcttaaagag ggggaagcat 540 ccacaagtca ggaaagcagg ctgctgaccc cagacttggt gttgcagaaa cccacagtgc 600 cagggggctc agccacaggc ctggaggtca agggggcaag aatggttttc cagaaccaca 660 caaaaggttc attctgtgaa tctctggcat ggacagacaa atgcttccca ccctgctggg 720 cctgagagac ctcaggggtg tgacattctc aagtgaagga ttcccagggg agcacctggt 780 gagggacaag atctgtgggg caggggctac agtgagcccg cttggcctgc tcccatctca 840 ctcatggcaa acaaagttca aaggttctca cagagtccaa tacctgtcca gggactgagc 900 tgctgctgga gcattctgag ctgctttttc tcattttctt tactcttttc tgttttgtgc 960 aacatagcaa gagaggagcc aggaaagaag ggagggtgaa gagaaaatta tgcaggcaaa 1020 tgactggcat gggtctatga gaagaatctg caagaaaggc tggaaactgt gtgaactcca 1080 gttttcatta gtgtatgact gtgcagagca atacatttac cacttctaac accagcctgg 1140 tctgaagcat ctgctccact tatccacttg tcatgcaaca atttggagac cagcaagtca 1200 gagtgaaggt cctaagcctg ggcacagcat gtcttgtgcc aatgttttcc tctgtccaaa 1260 actatggaac attgtgatct tcatctctca tcactgaaca tgaactgtgc caacagcccc 1320 tccaagcacc atttcagggc gctttctgtt gcttatcatt ctttttaacc tgcttttctt 1380 aatttcctaa ttcagttctg tgtaacacta gcacaagtgg agacatcctt atca 1434 // ID JV172745; SV 1; linear; mRNA; TSA; VRT; 1725 BP. XX AC JV172745; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15563.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-1725 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-1725 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; dfecc200f367b9bdd59b614900cc7f04. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..1725 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 1725 BP; 568 A; 400 C; 315 G; 442 T; 0 other; tttcttgcct tgacaattaa catatctaac aggtttcaac aagccagaca tccatctttt 60 ccattaaaaa aataagcaag cacaccaact cttattcata gcaagagggg taaagactca 120 acactttcct gagtgttgcg caaataataa caggttcaag aaagtcagtt aaataaatgt 180 aatgataaac ctaaagctaa gctggaggac cttttgatta acttcatatt tcatatatta 240 tttgcatcag ttgagagcaa catgagttac agaacttcca tgaaaacaag ccacttacaa 300 gcaggtgttt aagcttgatc agtttattaa aaggattata tgacacggtt gcctgcaata 360 gcaggggact ggatctgatg acccaggaag ttctttccag tcccatgttt ctaagccatg 420 caccaagtgt atccagccca cactttcaca tttggaaaaa gccaaagcca cacacacaca 480 ctcacaggaa aaaaaagttt taaaaaatta aaaaagacct tgatgacacc atttcatttt 540 tctagttatt cactatgcag aagggaacag agcttaagtc ctgtacagag gatacattta 600 ctcgaggttg atgtggtact gaagtcagtt aataattaga tacctccagg cagattcagt 660 tacagggcat accaacactg cacactgcca gacaatttct aatcaagcca agaacctctt 720 gcaggatgag gtctctgcta gcaagcacag agcacactga gtaagctaaa agcagctgtt 780 cttaggtgaa ctaccctacc aaccatgagt gaatgacaga tagatggtaa gaagcattta 840 cctactagac aagatctctg cacacccagg cagaattagt tcagagctgc aaccatcctt 900 cctaccttgc ctgtctcttg agtacgttct ctttagtagc tggtctacag aatcagtgca 960 gccattctca agcactacta aagtagtagt ttgcagctgc tatgcaagaa tctactttca 1020 aatggtagtc agacattccc atcattgagg ccagtttgct tggacagcat tcacagccac 1080 ggtactaagc ctttgcaaca aatagatacc taagcaattg cctacattca gcccatctaa 1140 cttttaggca cttggttaag gtgtctgggt cctttgtcac ccagaactcc ccccaccccc 1200 cagggaaaaa agaattactg aaggcaggca gtctcagttg ccttctggag gtgtctcttg 1260 accctcccac tgagcaaatc aagctcttaa cacacgcacc tcagttagac aggatgaatg 1320 gagacctgta tctcttccta gagatggtat caatattctc caaaaccaaa tgcaatcaaa 1380 caactacggt tttcaaggtt ttcaacccat tacatttgga aacaaaaact tacagtcagt 1440 aattatgctg tagtccctcc ctcccaagca taaaagcctt ccacatggag gctctgctta 1500 aaaaaaataa gaaaaaagaa agagaagaag cattcttctt tcagacaaag aagagtgcac 1560 acggctgctt tgccactcat tcatggggaa gctgaaggat cagagaacac ttattcagag 1620 aactggaatg actaagcact actagtgcat gcaaagcaga agtaacaaga tcgtttttaa 1680 attaacccta gtcctcttct ccaccccaca aaattcatgc aagtg 1725 // ID JV172746; SV 1; linear; mRNA; TSA; VRT; 834 BP. XX AC JV172746; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15564.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-834 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-834 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; e5597fa470a3514069e5050144ea8e67. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..834 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 834 BP; 209 A; 184 C; 172 G; 269 T; 0 other; attgttaaat gtcttactta ttaatattta ttattaggaa gtttatgttg tttcccacaa 60 tcaccgtcca ttaagattgc aaatatatat atatatgtat atcattagaa atttattgct 120 agaaactctg tatcaaattt gaaaaaataa gtagaggaaa tgttaaatct agagatagtt 180 ctggatacgc taataaacaa aataaaagca caaacaagtg aagcacccga agcagggaga 240 tgtcaaacgg agggacacgg ggtcactcgt cccacgacaa gatcacgtag aggtgtggat 300 gagccgagac gtcgggcttt agccctgctt atttttgatt gactttcaca aagacatttg 360 gggcaaaaat taattcgtct ggccttcagc tctgtcttct tccagatcat gtgcttcctt 420 tttggcctcc ccttcctttc cctcctgtct ggaagcgggg aatttgtcct tgttgttctc 480 ttttttccat ttcatcctcc tgttctgaaa ccagatcttt acctgcctct cggtgagtcc 540 taatgcgtgg gacacctcga tccttctctt cctggtcaga taggggttaa ataggaactc 600 cttttccagc tctagagtct ggaatcgact gtatgtttgt cttcctctcc tcctacccgg 660 cgctgcttgt ggtctcatcc agggaaacat ttgagcagga gacgagctct gatttaagtg 720 gtctggttcc tcgccaatat tagcactgga cgatttacag tcaggatatt gtaccagctc 780 ggcctcttgc tgtgtcgtaa aaatctgctg tctctgtaag ttatcgtatc cgtc 834 // ID JV172747; SV 1; linear; mRNA; TSA; VRT; 1221 BP. XX AC JV172747; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15565.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-1221 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-1221 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; fe2dcd73c56a6cce45393b6c3b66aa9d. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..1221 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 1221 BP; 321 A; 316 C; 237 G; 347 T; 0 other; cagtgggaac acccttcctc tcaggctgat gggagaggga taggtgagtt tttgccatgc 60 aaatgggaag atttccaaat ccctgccggg tgtaacgatc aacttgagac tgcgcagcag 120 gagacaactc gatatcctga gctccataca ccttctgagc aatgatcctt attttttcaa 180 caataggaag ctccaagccg tagagatatt tgaaactgtt tttttgattg gctgcctttt 240 ccacagcttg agctaatttt accgctcctt taccaccagc tgaccagtga tggcagggta 300 cagcatcaaa tgctccagac tcctttgcaa tcttacacac cagatcaatc tcagctggag 360 agtcagtttt gaagacattc agagcaacca caacaggaac tccaaagagc tgagtaattt 420 gaatctgttt ctgtagatta cagcagccat cagctaccag ctggaggttc tcttctgtgt 480 attctttctt caaaggggca ccagcagtta catttggccc acctccatgc atcttcaaag 540 ccctcactgt agcaacaagt acaaccacac tgggaaccaa gccagatgct ctgcatttga 600 tgttgaagaa tttctccatc ccaatgtcag caccaaagcc agcttcagtt actacaaatc 660 ctttctctcc aactaattta agagcaattt tatctgccaa aacagaagaa tttccatgtg 720 caatgttagc aaaaggtcca gcgtgaacaa atactggtgt tccctctaat gtctgcatta 780 gtgtgggctt aattgcatct ttcatcaaaa ctgccaaagc accagttact cccaaatcct 840 ctgctgttac tggttgtcct ttcttgtcat tagccaccac cattctcccc agtctttctt 900 tcatatcttg aaggctggtg gtaagtgcca ggatggccat aatctcgctt gcaacagcaa 960 tatcaaactg agcctgacgg acaaatccct tctccgtgtt tgcctgccca actgttattc 1020 tgcgcaggaa tctgtcattt gtatccacca ctctttgcca tgttatggtg gatgggtcaa 1080 tgtcaaggca tacaaatttg ctgatctcct cttctgttaa agtcttagga tcagtcttgt 1140 ttattcccag ccttctcagg cgggcaagct gaatagcaga aaatcctctc acgccattaa 1200 ccaccggaac cagcctgtta t 1221 // ID JV172748; SV 1; linear; mRNA; TSA; VRT; 1654 BP. XX AC JV172748; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15566.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-1654 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-1654 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; f3016fd241925136fcb4276c231e2380. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..1654 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 1654 BP; 463 A; 355 C; 290 G; 546 T; 0 other; ctgccaaata tatacagcac tttggtaatt ttacaatagt ttgctgtttg catactcttc 60 acagctgaaa tgctaagtta tacagccatt tcactgtcca tttgctttta tatttaatta 120 ctgaaatagc aaatgtaaaa gagtaaaaat aatcccttct tgccaccttt tttaaaattt 180 taacctgatc tgctttgata catgaaagac agcaggagtc agcagtactg aaatccttgg 240 aataacacca ttcatttcat tcctacataa gccaacaggt attgaaagaa aacttcgttt 300 cagaacacga aagtctacaa gtgtacaact tcctatttct gtttatgtaa ccttttactc 360 tagatgtaga attacatgcc aatcagttca gtctcagatt tttgtatctg cattactgta 420 agcttcataa cagtgttcaa tttaacacag gctaccaaat gcattcagtc taaacagaac 480 agctgaaaaa caaagactca ctgtgaacag agagcacatc tactgggata gtcagtgcat 540 ggaagggaag gttgcaagca aagggcaata gctgttttac tctaaattcc catggagaca 600 tcgcatctag cataaacaca cccatgggag caagagcaga aataactgtt accctttcaa 660 gtttacaccc ccatttgctg tgcgttgaat ttctttctag aagggaacag atgaactagc 720 attaaaaaaa agacatctat ataaaagtta aatatttgat tacagtagca agtcaccact 780 tcattatggg aaataactcg tctcttggaa tcgttattga tccgaactct cctgttttgg 840 ttgtgtgttg gagactggta actccagact tgcccatagc aggggctctg cttttctcat 900 agtgagctca atctttgtag cggtcatgtt cacgtaactc ctctttacat cgatcactcc 960 ccataacttc acagtacgat gaaactcctt ttctccttca aatacaatat ggatatttac 1020 cattgtgcta ttagcttcca cgtagctcag atcagggaca gagtttttag catatacaga 1080 aacagtcact tctcctccag tctggtgcca atcatgcctg catggaacta ctttagtacc 1140 tgcatccttt ttagtccata cgtgtgttcc tcttgtgcag ccttcttgag ctaaaaatgt 1200 attgaagtca gaagtttttc ttttacaaca gctccagtac ttcatccctt catggaaaat 1260 aggtacacca gaatggtata tacatacttc ttctgtgctg tgcggtcctt cgtatgtttt 1320 tgaacagcct gcatttttac atgccgtccc aatcttgatt tcatcactat cttcctcttt 1380 tctcccttca ttttctgatg acagtttcag tttatcgaga gcttgtttca aggaagctga 1440 cactttcagc tgcaaatttg tcattggctc atctgggctt ggtctcttaa ttgtttccaa 1500 tggttttggt gcctgaatta tgtgttcttg aaatttgggt ttcagttcag ctagctcctt 1560 tcgctcagag gtagttttga cttctggttt aacaggctca ggaggtttct cgctgttatg 1620 gaaacctttt gtacagccca caaatgctta agaa 1654 // ID JV172749; SV 1; linear; mRNA; TSA; VRT; 1229 BP. XX AC JV172749; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15567.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-1229 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-1229 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; 45000318987cb21ee5e34e11d7c3d8e9. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..1229 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 1229 BP; 359 A; 220 C; 234 G; 416 T; 0 other; tccatcagca agtctgagta atgttcaggt tatgggcact cattaattct gtggactaac 60 gttgatcaca cttgtccatc accagtctca tgagcactac tgaggattaa tgtcaaaaac 120 tgacagcagg gacagtgggg taagaatgga aacgaggaat tgcagctctg ttctaccttg 180 gttggttatt ctggttaggg tgatgtgcca gtgattgtga gagctcttct agcttagtac 240 aaaatttact ttaagggcaa aaaattgtga aactaactgt aggttctgta actcatcaag 300 ttctttaagg ctgatttgtt ttcctctgat cctgatattc actataactg ttcagctgca 360 ctataaataa cagacttaat actgagtttt tcagtagccc atatattctt atgtttttct 420 tcaggtattg caaaaggaac atagtaaaca ctgtgtcatt agagtgacac tgttctgaag 480 gatttttgcc aactgcactt aatgaaagcc catatatttc taactttcca atcaggaatt 540 cagataccaa aagatcattt ttctggaagt tttattatgc aaaccttgcc tttttaatac 600 aaaagacatt aattgaatta actagcaagt tccctgcaaa ctttgtagat gtggttttgt 660 taagactgta taaattgtga atatttgtac actttgaaag agcaaaataa ggaaactaga 720 ggagtcttaa tagctgctgt tacactagaa tcccaagttc ttgtcaagca gtttttttag 780 ctgactgata cattaatgca actgttttcc actcttcagt tctaagctga aatgtgattt 840 tgtttcatag gtgatagaaa ggagtatgaa tttggacaaa atagacattt caacttgtca 900 ggctcttcaa ggcaaatagg tagaacccat gtccatgaac atgtagagga aatccttttg 960 tggcctttgt ttatcctctg ctgtttgttc cctcccttct cccaatgcgt gcagaaaaat 1020 cattgctcag aatgttggtc acaatctttt gtctcctcct tggctgtggt tttggtctct 1080 tgtgcatagg caggtgttag aactagaata atcatttcta gaaatacacc atgaaagcag 1140 aatgctcaat tacactgtgt tcttctggtg catttacacg ttatatcaca ctaaaaagta 1200 caactggctg ctatggtttt ttaatatat 1229 // ID JV172750; SV 1; linear; mRNA; TSA; VRT; 860 BP. XX AC JV172750; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15568.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-860 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-860 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; 70bbf4a6e8d4afa3025cf8a1c4ed34fe. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..860 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 860 BP; 218 A; 142 C; 180 G; 320 T; 0 other; aaacttggac atgttttatc tccagttaat gtatttttct acttgagata tgtttttact 60 gggacctttt ctggctaggg agctaatgct ggaggggttc tcaggaggga gttagcatta 120 tgaaacaaag atgtttacct tgctgtgtct tgctgtgtca tgctgcgtta aggctctgtc 180 tggcattata aattacagct tttaaaaagt acccttgaac tgtggtaggt gggcttagaa 240 gttgtagtgg cttttcactt aaaattgtca cattcatttc tgaaagtgct taattgctaa 300 agagatttgt tgaagatgta agatattctt catgtagtaa gaggattctt taggatttgt 360 aatactgctg atttatgccc agcttttgct gagtatctct aatgctccca aaggtattga 420 gtgaaagcac tggagagcca tcctgtgctg ggggctgaag gttacacact aggatggaaa 480 attttcttct gaaccatgtc tggaatcatc tggattcttt ggagatgagt ttgattctcc 540 ctgttcttga cacatttcct cattgtctca agtggtagaa gaaaaggttt tcaagtcatc 600 agtttcctat aaatagtgtt tgtacttgtg cccttgactg agtttttctt gctctctttt 660 gcaattaggg tgttgcagtg ttctgtgctc taattgcctc attttttttc taccaatctg 720 tccaaggagt gactgtttta atagtaattc aatttcaatc tacacaattg tgtatttgta 780 cctttagaat accagcatac ctttcataat acaactttgt agaacttatt gagatggata 840 ctaaaaacta catttgtcat 860 // ID JV172751; SV 1; linear; mRNA; TSA; VRT; 1151 BP. XX AC JV172751; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15569.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-1151 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-1151 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; 5208435c48e05e957bb5fd78914dd9fd. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..1151 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 1151 BP; 320 A; 273 C; 287 G; 271 T; 0 other; gaaaaaaatg ggatggagtt ggttcttcca gatgttgccg cctgaattta cccactggaa 60 tcccacagga tcctcttggc atgaaagttg gactgggagc acggatttcc ttctggaaat 120 ccccgttttt atggaatggg atgccctgga tccttctctc ccttcactgc tgacccaggt 180 ttgccaaggg aatgctggga ataaaatagg atttcccatt ggaagtgtct ctagagtgaa 240 tcccaaactt tcaagcccat cccattccag gcattccaca accccttatc caagctggcc 300 ttggaagttc caaaggaaac ccatggatgg attttgattc cttgtctttc tgggatagac 360 agcagcattc ccaatgggat tgggggatga gcatcccaca tttggcattc caacatggat 420 catgcatcca tttggggctc ttggggttgg gatcacaggg aattacacca ggatgtgaaa 480 tcccagagtc cccacaaatc caagagatat cggacctgaa ttcccactgt ggattccagc 540 agagcactca gggaattcca gactcactct ggcatagctg gatcctggtg ggaaaggagc 600 agggaccaac attcccataa aacgcaaact cccaatccca gcaagggcca aacagaagca 660 atttttgtcc tcagctcctc agatcctttg ggataataaa acctctggaa aattggagtg 720 aatcctggtg gtttgatggt ggctataaac agggataggg gtgggaatgg ggttgggagg 780 cttttagggg aaaaaaagaa ggaaaacgaa gcatttaacg atggaaaatg aaacctccac 840 cctgggatgt gcaaatccgg agccagttcc tctgctccaa cttttgggaa ggggccacgg 900 atcagccaaa gctcagcagc agggatgggg ttataaatcc ctataaatcc caaagccgtg 960 cgttttccgt gcggaaaaca cagagaagga gctgctctat gcaatctggg agatgttcca 1020 atgagaatcc caggatttga tcccccatgg attacatccc catccaacaa aggaactaaa 1080 atattttccc tattttcaag cacagcttta aaatcccggc cagagcgggg caggagtgcc 1140 atcagcggtt t 1151 // ID JV172752; SV 1; linear; mRNA; TSA; VRT; 1347 BP. XX AC JV172752; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15570.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-1347 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-1347 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; 0b894cb70f666a97617bfb05a82df8dd. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..1347 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 1347 BP; 367 A; 285 C; 261 G; 434 T; 0 other; ctgcagtttt acatatcttc agttctgcaa atacaacatt tgagtaagac attactcgtt 60 ctagtttaca cccacgcttc atgaggttgc tgcagtgtgg aaaatgtcac attgcttctc 120 ctggtagaag agccacagaa atgactggga cacacaaaat tagtcctgcc catacacttg 180 gctgaaaaca tttgtgtagg actgactggg tgcctcactg ttttatacct ttttcactta 240 ttatttcaat tgatatacaa atatagttga gacttttata cacacgatcg gattcattat 300 tgtgggatct aattgtaaaa agttaacatg agaaaaccat gaactttgta gagatcctcc 360 tgcagaggag ctcagaggtc atgacttgca tattgggttt taagcttact cttcagacat 420 ataaaaatga tttaaatact ttctctgctg aaaattcaaa tatgtccttt atttttgaag 480 agtgtactat atgctttacc ctcaggctca gcaagagatc tgttatgatt gacttgatgg 540 ttatattcct aataggacaa gtcactgaaa gtagtgttca tgtttcctag agaaatttca 600 taaaattcta cttgaaatgc aggatgggac aggagtttac tgggattata ttcatatatt 660 tactaatcaa gattagttta ttcggtaagt ctttgaaaaa gtcttttttt ccagatgaat 720 caaacttttc ttggagggct cattttctca ttaatcaact ataccaaaca tgttgaaaag 780 tacagtataa actggtttgg tttggtttga aatctcttcc tcctggatgc caactggcat 840 tcccaggttc cgtgcactca gtcagtaact tgctcagtct gagtctgttt ttccagaggg 900 gacgcttctg ctacttccac tcctgttctt gctggaagag ccatctccaa atggctccga 960 gtctttcact tggatttaag taagtcttcc cattcagcac tggactcact atttttagga 1020 attgctggaa agattgactg catcttactt tggaattctt tcatactgtg cacgcccaga 1080 gccttccaga tggcaaaact cagcaatcca actccgcacc atgcatagag tgagccccac 1140 cccagggctc gtaaggccag tgaggaacca ctctctggta gtgctgctgt ggcagcaatc 1200 cccttactga accagtctgg gttcttcttt tttgtcattg caagtgttgt gccaaaacct 1260 gctatcattc ctgctgtagc aacagtacct agaaaaattc cacctttgat taagaagagc 1320 ttgtcctggg atgccgcaga gctccca 1347 // ID JV172753; SV 1; linear; mRNA; TSA; VRT; 486 BP. XX AC JV172753; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15571.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-486 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-486 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; c61c17a049a879ccef6146887d77dea7. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..486 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 486 BP; 168 A; 86 C; 98 G; 134 T; 0 other; gctcccttat ccagttctat gatgagtaca ttgacctgta taaaattgaa aagctcatgc 60 ctccatcaaa tatcacagtc acctgtgatg aaattaaaaa ttattgcata attcaatggc 120 aacgacccca aataagtcat tctagcaagg acatgtgttt taaatatgaa atttacataa 180 agtataagga taatcctaaa ggaaaatcca tatatacatc catacaagaa gggggaaaca 240 gtaacatatt tctaagatca aatacaagaa agaagtacat cttgaaaatg agagcagctg 300 gcagtgcctg ctttgtgagc ccagcctggg gggaatggag cgcacctgtt gagtttggaa 360 atgaggaaat gatatcttct tcagtatgga ttttacttgg ggtaggagtt gcaacactct 420 taatggcaat catcacaatt tttttctgca aaaggactgg ctgtttgaag gcagcatttc 480 cacaga 486 // ID JV172754; SV 1; linear; mRNA; TSA; VRT; 763 BP. XX AC JV172754; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15572.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-763 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-763 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; 03aac151b4167eeaf47cd80e31038f23. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..763 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 763 BP; 168 A; 178 C; 122 G; 295 T; 0 other; tcatcttcat agttttcatg tgtccataaa ctcagtgctt catcatcata ttgatcagga 60 gaggagaaac catctatcct aaccactcca ttcttactaa aagacaacct cctaaagtag 120 taaaatctac aaaatactgg tgagtgagtg ggttcttctc ctttcttact tcttattaac 180 ctacattctc tgcatttttg taaatttggt cctatttccg aacaagaatc atcctgcaaa 240 aaggactctc ctgtttgctt cagcttcttg actttgcgcc agtcctttaa cacggagcga 300 ggtatcccag tgctgttact gccgctctgt aacttcagct tgctcttttc tttggcgctc 360 ctgctaagaa caccatttgg tttcacttct tcctcggtat cacccttttt tttctgcaaa 420 tcattttgtt tctttttgta agttggcttg ggctgccgtt tagtcctttg ctctgacttg 480 ctctcgcttt catcagagtc accactttca gagccagact cgtacgttcg ttttcctttt 540 ctccttgggt gcttatcttc ctttgcaaac ttatctgcca aaattttact atctatgtta 600 ttttgcaaat catttgatgt agaagctatt aaattgacag tacacggctt aataatttct 660 gaaacactgt tccctgaatt atctttttta ttagtgtttt tatcttcctc tgaatgcctt 720 gttagccaag cctttttcag tttagtgtgg tagtttggct gac 763 // ID JV172755; SV 1; linear; mRNA; TSA; VRT; 644 BP. XX AC JV172755; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15573.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-644 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-644 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; b6abea633534c697da039daa6d48cd1a. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..644 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 644 BP; 129 A; 160 C; 181 G; 174 T; 0 other; tcctaaagcg gctcctggca ggtcagggac atgaaggaga aagtgcccag gtcaccagga 60 gctccccatt cccatcctgc tggctcctct ctgtgtcctg tcctggtgtt gctcaccagg 120 gctgcatgga gtcatggggg gaggtggaaa ttgcatcttt ggctacatca gaatgtcact 180 tcctctgagt ttttggtcgt ggggtttttt ttcagacaga ggaagtgact tttgtcaaaa 240 gctccaaatg aaacattttg caaatgcctc cctgtttcct cctgatgaga aacattcctt 300 ccctgcagac tgtccctttc tcctactgtc ttctctctcc tgagagtctt gcaccatttc 360 ttgtttctct tccctgcggg gtaactgtcc ctccagcagc agaaggatgc tggtggttct 420 ggtggctgtg gaatgctggc agtgctggtg aggcagctgg gtatttctca gaagtacctc 480 ctggcagcgt cccagttcct gcgagccaca ggatcctagg gtccaggagg gaggaggaaa 540 gcccagctac aatgtgctcg tcaggatgac acaggatgat aaatgtggct ggagccagtg 600 cagaaacaga tttggaggcc tgcagaggtt ttggggcaag ttct 644 // ID JV172756; SV 1; linear; mRNA; TSA; VRT; 653 BP. XX AC JV172756; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15574.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-653 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-653 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; e43125dd6b33d0c4b72a8e2c945d6c87. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..653 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 653 BP; 210 A; 111 C; 116 G; 216 T; 0 other; ttgattacct tgtaaaattc tatttgttat agagtctaat gcagaagaag ctgtgagaac 60 cttgccaaag aatttaaggc agcattaact acttaggcag ttgtatctta agaaaaccat 120 ctgggaaaat aagtgcagtg ttttactgaa tcaatcctgt tttcccagtt tctccatcag 180 atcagacatt cttagtctga atcctgctgt ggaatgtccc attacttgtg gtctagacct 240 aatttttcaa agatttttac atcatgaaca gcagtggctg taggaactgt tagtttatta 300 ttagaaaaca atactattat taagctgcta atgtagtgtt ataaaatact gtagtttcca 360 agcattaata tgttgtccca gtcccttatt atataggaat tacttagtgt gatcataaaa 420 ttaccggctt ctaaaaatat atatgaatta aaatcaagga cagaatcaaa taactagcta 480 aattttggtt gatcttttcc tggtgaactg tgctgtgatg ccaaatccaa acagctctat 540 agttgtacct gtggtccttt ctcctttccc aaggagaagt tgaaatgaaa atataataat 600 ataacaaaca gtatataagg gtttgcccct agagcacagc agtgctggta gcc 653 // ID JV172757; SV 1; linear; mRNA; TSA; VRT; 859 BP. XX AC JV172757; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15575.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-859 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-859 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; 7de838bef4a9e2a8308d27983a6c4c9a. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..859 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 859 BP; 201 A; 204 C; 210 G; 244 T; 0 other; catgagaatt tcagaccaca aatccaggaa gttctcttgc tggtctgaca ccaggagaac 60 cttcaggtta tggaatgggt tttctcgtgg gtgccattct agcaattttt gctcctggag 120 gctatatcca gctggcaaaa ggtaattccg ataattttga agctgattag catgacagct 180 atcatggacc cagatatgag acacgcaagg gatccctctg gcaaggcaca gcaagtattt 240 ctgagttcga caatgctggt ccgcaattaa aagacactgg tatgctgcat tacactgggt 300 ttcattgaag tcttccagga tatagccagc tcctgctcgc agctgttgtg ctatgtaatg 360 tttatcatac ggagtcatct ctaaaatatc ttcttcctcc tcactgctcc cagtgggacc 420 atctgatggc ttctggtggt cgaccaattt gtcacttggt gttgccatgg tgagaagaaa 480 ggcatagccc aaaaagaggg tcttattgtg gggcaagggt ccatggtcac gtttagctgg 540 ggatcgttca tcttcagaag caagaagttt ccttttccca gacagtgaga ctggtgggac 600 acgtgggctc tcctgccctt tacgagtggg agttgtgctg ctgccggaag tgctgggaga 660 accaaggtta ctacgtcgct tcctcttccc ttccaccaga ttatcaagac tgatgtcagc 720 tgctttggtc acaggggtga caggttcata aggacctagc ccaaactgct cccgcagctt 780 atttccttgt tcctgagaca ggataacagc cattcgttta taccacttcc tctggccttc 840 cttttcaatg cagtagtat 859 // ID JV172758; SV 1; linear; mRNA; TSA; VRT; 556 BP. XX AC JV172758; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15576.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-556 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-556 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; 010e549f36fa7636674fe8c31dd3df47. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..556 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 556 BP; 226 A; 91 C; 86 G; 153 T; 0 other; ctaatttcag acttctgcca caaggtagaa caaaaagaca aaaataacat aatgcagaat 60 aagaacagaa tatactaatt tttgagatgt gaactgttga aacatccaaa catgtttcaa 120 ttaatgtaaa ataacaggaa ggaaaaacag ttttgagaag aagcacttaa ggatctgatc 180 tattctagtg attccaggta aagaatttac ttaatagcct cagcattagt aaaaaaacct 240 gtctctttat taactcacct tatgtagggt acaggatcat tttgaaccat tgagagcaac 300 cactgtaatt cttcatagct cctatcaact gcaaagcaaa ataaaacaaa atgcctagta 360 atatatacaa actggaagga ttttgatgaa gacaaaacaa tcatgagttt gtgaattagc 420 acataaagag catgaatcat tgcaactaaa gaggaattcc actaattaca gagtaaattc 480 aaagtaaaaa gtgtcttact ttacatggaa atataaacat ttacaaaact cttccgtgct 540 tcagtggttc aatacc 556 // ID JV172759; SV 1; linear; mRNA; TSA; VRT; 501 BP. XX AC JV172759; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15577.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-501 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-501 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; 51c9d82b272cea1d422cb467bce7fcd7. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..501 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 501 BP; 158 A; 89 C; 72 G; 182 T; 0 other; tctaagtatg ttctctgttc tcctaaaaac acaggtctac tttaggccag agtgaaatgc 60 aaactgctta cagctcctaa ccaagcaatt aatcttgctc tgattaagtg gctccttagt 120 atttaagttt tgtggcatct ggagatttga acagtcatta ctttatttcc tcctatgttc 180 ttaataaact catggttaag agccaaatct tgtgtgaact cacataacaa atctgttcag 240 tcttttcttt ctaatttaca ttttgagttc tttcaggctt gactcaatta ttgtcataat 300 gaattttaaa tctgggggtg ataccctcca tgtttctaca acaataactc tttaaaataa 360 aaggaactat ttaaaaatct aagtctattc caaataccag tgacaaaata tctaaataaa 420 atgctagagt aacaatttct gtgctatgta actgattttg tgaaacttga gatacacttt 480 ttatgaaaaa tgtgttccta t 501 // ID JV172760; SV 1; linear; mRNA; TSA; VRT; 953 BP. XX AC JV172760; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15578.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-953 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-953 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; 9dc42a8e73df9a14dda07f90902194c8. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..953 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 953 BP; 251 A; 237 C; 202 G; 263 T; 0 other; gtgtgtggtc tataacacca tgaagctcat gacaaattcc agcagtttct gcctgttgct 60 ctgaggtagg aacgtagtgc cgagttccaa aatggtgtct ttcctctgct gagtctgctt 120 gaaaactcca atttccttga agactttcac tgcatttttc acatggctgt aggtagcact 180 ctcagcatac acagcaacat tcctctctgt cctgcttatt aagtgcctgt gtagcttctg 240 aatatattca gactctaaaa caggaccact aaaattgtgc acaaagatga cagcagagct 300 gtatgcctcc agtaatggtc ccagtaacct ctgcaggaaa gtgatgtact gctggtgctc 360 ctcagactgg ctcaccttca ggtagcaatc tctctgctcc tccccaaaat cactgtcttc 420 atcttcctca tcacttctcc aagataatgg ctcagggagt tttttattcc actgctgctc 480 tgtaagactg gggctaacat cctcctgatc atcctgctca gccaccagga gaatgccata 540 ctggatcagc ctttccacag actcgtggca aacttgatag atcacctggc aaggcaaaga 600 cacagagaat tcattggaaa gcaagtagca caagctggca gcttttctga ccaggtgctc 660 ttgactgatt aagctgggag aagcaccact ggtaccattt ctgtacctcc tgctctgaat 720 tgcatgaaga ctgcaggcaa taacagcctc tttaatgaat acatgaagta ttccattgct 780 gtagaagttg agctcaaaga cagcaggtat tgtgatgctg ggagtgacga agaactcatt 840 gtttctgctc gtgtttgtga tatttacaca gttccccaac aagtggatgg catgcatgac 900 aacatcatct gagttccctg aaaatcccaa gtcaaagtca cgggctagga cct 953 // ID JV172761; SV 1; linear; mRNA; TSA; VRT; 1819 BP. XX AC JV172761; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15579.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-1819 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-1819 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; 409dad6b37e91b91a4d01a3e2bc1ec9e. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..1819 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 1819 BP; 491 A; 415 C; 438 G; 475 T; 0 other; gaggcattgg tcctaaagag acagagagac tgatgaagta tctgaggtaa acagccattc 60 caaaggctct ggctttccaa atactacctt caagattggt attagcaaag gctagttttt 120 caaagcagtg accattgatt aaatcagtca tgggagagga ggtcactgta atagaattgg 180 tattaaataa gaggttctat agcaccacaa ataccctttg gttaatgtgt caactgtctc 240 acagctgatc tgccacagaa actttgaggg acaggttttt ctgagttgtg ttgggaatat 300 tccagttagc aaatgtacta aataaagcct aacctgtgca attttgaaaa tgtaattaag 360 tagtacgcta agctaattgc tgcccccaag tggacagaat tgtaccataa tagtgtgaca 420 tcacctgcca aaggtggcaa aaggattgtt tgataactgt tcttcctgtg acccctgttg 480 ctgttacact tactcaagtc cagttacaaa actgaggcgt ttctgtctcc tggataaccc 540 tggctgtgga agggtcccta gagctctact tctgtacaca gtaacacttg tcccttccaa 600 ggaaaaaggg atttacttta gagatttgct tcacaggaag gactttgaaa tccttcaaac 660 tgaactacat gtttatttca aatctgatta aactccatgt cctcacttag aaaaagaagt 720 cttttgtctt ttttcatcct ctgtacagat tctgatcatc tttcccagct ctggtacaac 780 ttatgactag caaaaggaat aatgagagtt ttctaaattg tcttttaaga aaggtatacc 840 atatatgctc ttaagcactg gtagtctgaa atctggcaat tcatctagag agtcactact 900 cccagaagat taatacctga gtgcagaact tcctattcta cagcttaaga agtaagcaga 960 atactcaggg agaggtgaga tcaaatgaaa ctgtacaaaa agagcacaga aaagggtcag 1020 taaagcacag cagaaggcct gggtccggtg gagctgtggg ccagccttca ggcaccacaa 1080 actgtccctc ctgcaaaggc aaaaaggaac tgaacatttt actggagttg ccttaactga 1140 gcagctggct gatctctttg tgaatgcaca cgaggaaatc cacatacgag gctcctccat 1200 aaatgttctt gtcttctacc aggaactggc ggaaaagcat ctctggctgc tcccgctgct 1260 tcactatcat cagcttcata gtgtagggct tttggctctg gatttgctcc aggatatgct 1320 tcagtttctt agaaaatgga ttgtccaggt taggcaggga tgtggcctcg gtgctgatgt 1380 gtgcgaagga tggcacgttg aaaaggccct ggatgagctc tggggacacg ctggctccca 1440 gccacaggaa catgctcagc ccgttggcca gcaggaaggc ccctccctcg gagaggcgct 1500 cctcggagca gcgcacggca cctggcaccg cctcactctt cagatccagg ctgtgaattg 1560 gcagcagcag ggggtagaag tagagctgtg tgtcagccac ccccatggcc atgactagct 1620 ggcggtggaa agccctctca tccgtgggga tttcaggcct gccggccagc acacagctct 1680 tcagcaggca gttcatgtac acgggcagca ccttcattgt gtctggcagg atcagctggc 1740 tgacagctgc tgggctggca cagttcttct tgtagcaggc cagcatgtga gcagtctgat 1800 tcatcaggat gtccctgac 1819 // ID JV172762; SV 1; linear; mRNA; TSA; VRT; 1049 BP. XX AC JV172762; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15580.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-1049 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-1049 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; 665f9032a5e92e732f6ba3f1ae6af0bf. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..1049 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 1049 BP; 318 A; 183 C; 185 G; 363 T; 0 other; tactctcctt taaaaacaca agaggaaatg ctgttgtcgt gcttttctgt gaaagcgctc 60 tctccagatt tttataaggg tttttttttt ccaaattcag tatcagaatc cagcacatta 120 agtataaaaa tatgtaaata aataaacacc gtaaaccagg aaaaattact ttagtgtgca 180 tcctatgcca tgtcttaaaa tagcttaagc agtgaaccca ttttcagtta tttcatataa 240 cctgtgctgg gtatctagtt ttacagcatg ttatcaagta actgtgaaga tacttagtgt 300 tcttttgttt cattcccata ataactactt ttttactaag tagtcttaag gctatttctt 360 ggcagaacta ctaaaatagt aatttggtaa ttactagtta ctaaggattt cttaccatat 420 ttgagtttgc atcatctgaa tataacatgt gttatggttt tgggaattat aaattagtga 480 gtctctgtgt cctgagctca gattatgcta gaagagtgca cgattactag tgaagttctc 540 ctgacaccct gcacataatg gagtgattga tgtgattaca ctcatgtcca gtagcttttg 600 atgttcctgt ctaaaataca agcctactaa cagctggagc agctaagagg gacctctgtt 660 gcactcatgg gccagaattc aaattgtctg aattataggc agtcttgctt catacatgag 720 cataagcgtt tggaggaaaa gattctcaca gtgtcattct gtagattttg ttatagttcc 780 ccagtttctt gcaattcaaa tgttgcaagc agcagaaatt acatagagaa gcttgcatgc 840 tttcagaagc tttttaagct ttgttttcta gagcaagttc tgtaataata gaaagaaaaa 900 aaattattgg aaaataacat gtaaattaag gaatgtacac tatttctttg tatttttacc 960 aaactgtttc tttcttccac taagaacacc gaaatccagt ttctgtagct tctgggtatc 1020 aaatttcaca gctgtcactg ctgccatgc 1049 // ID JV172763; SV 1; linear; mRNA; TSA; VRT; 704 BP. XX AC JV172763; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15581.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-704 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-704 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; fdcb4129e8d0335f4159e382633ee7bf. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..704 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 704 BP; 241 A; 145 C; 123 G; 195 T; 0 other; ctctatttga cacaaaggca tgcagtgaaa tattccaaga gtatcattcc agtttttcca 60 aacgtataga ctctggccaa aaatctctaa gtaaatatgt ttcacttaaa ctggaaattg 120 taagcctgct tttgtttcta ccagttctat ttccaacctt gagatcaggt atgtgaaagc 180 ttcatgctat gacacagctt tcttttaaat tctcattcta actgtgcagc agaaaataag 240 caaagcagct tcccctttaa agcaagagca aagagaatat ataccccctc cttatcatcc 300 cctgcaaacg agatactgtg gcatatgcaa cagaagatac agctgctaat caaaataaaa 360 tatattttaa aaaaaataaa aaaaggagca gggcattgca aacagtacgt acgcttattt 420 gaagcagtaa tctctttggt ctaatctagt tacatacttt cgtcttttct aagagtctgc 480 ccacagcaga taaacacaca aaccttcttg tgctgcacca actgacgtca gcagtcgctt 540 aggaaccgcg tttggtgcaa aagtggtagt accgaaacta tgtttacaat tgaaaaagaa 600 tgaagtatgc agggctcacc agagccttgg gaaaagagac acacatttat aaatgtaaac 660 tacaaaagag ctgcttgaaa aattccctgg gctttctgag atat 704 // ID JV172764; SV 1; linear; mRNA; TSA; VRT; 1670 BP. XX AC JV172764; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15582.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-1670 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-1670 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; 624c6febbbb85614828846b7cb5d6597. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..1670 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 1670 BP; 489 A; 404 C; 335 G; 442 T; 0 other; agtttattgc tggtatcaga tctcagatgc tttacacatc acaggtgtta aaaagaacag 60 aatgttgtac ctcacaccat tcatcattcc tagcaaatta tccttccttt tgaaggctct 120 accttccaga gcttgttttc ctttttgctt agacggctca agtagaaaat gctcttcaaa 180 gccccaaaag tactattaaa aatgtatttt gttatcctac ctgaccagaa ttttagagct 240 gagggaagtc agccccacac tggctcaccc agagctgctc ccttccctca tggcacattt 300 ccagcaagat ctccagagtg aaattttgag attgtttcca atcaaatgct taatccacag 360 caatgccagt actaacaaag cttaggaaaa tcaggaagag aaattgccct acaacaccat 420 tgggtgggag gggaaaacaa accctgggac tggattacag gctggctcat gaggtatcac 480 aaatttgctc tcatgaagag gcaggaagaa gaagagggct cactgaaccc caggtttgtg 540 tgactgctgt tcctcctcat tccatccagc actctggctt taatttccct gcctgctttc 600 catgtgctgc tctgaggcag aaatgacaaa tgtgtatcaa aaatgtgcat tttcatgcac 660 agaactgtgg gaacttcatc tctctgtgat acaatgcagt aaagacacct gtaacatcac 720 actggaaatg acatcaccct gaagacaggg atttttgcct aaaatccatc cttttgtcct 780 gccataaatc aatgtccaca gaaaagctgc ctcacaattg agaaatttct tctatgtcag 840 cagcaggcac aaagtcccac agagggaagg agaggtggca ggagctgtgt tctactttcc 900 ttcattgcaa aacatgagta agaggctcag tgtaacagga aaagcctttt ttcatttgaa 960 aacaggtgcc agaatctgag tagaagtgtt tttagtcttc tgtgctgttt ttttcagcaa 1020 aggaaaagtt tatctgggag tttcttggtg cctttccagc agcctgtacc aagagctcct 1080 gcacactggt atggaaagca gcacacagcc ctgcacagag ctgccaccaa cacccactgg 1140 ggaccagagc cagcaaagtt cacgagtttg gggctttttt tttcctcctt tcagcagcag 1200 gaaggaaaca tggaatacct tccccaccac atctttcact gaaggcaggg aagcctcatg 1260 atgcagggga cagatacaaa agcaagactt atctctgctc ttccctcaac ttctgtatct 1320 cagaggaagg aaaacacaga ttttttgctt tccagctcct gatttcctct ctctcttctg 1380 ctgcagccac tgacactgtg ctaatgcaag gattcacatt catcatctga aaggcagcta 1440 gagaagtcaa gaacatgcaa aatgtggcca attaaaaaaa aagacaagaa gctctgttag 1500 aacattcctg atggccttct tcaagagcag agccacacca tcatgggaac aaacaaatat 1560 cctcatggag cctttcccta aaagctgatt tcctgattta cccatgtgcc atgcaggcaa 1620 tcacagctaa caattcaggc cttcatctta tttggtgaat aaatccaacc 1670 // ID JV172765; SV 1; linear; mRNA; TSA; VRT; 1627 BP. XX AC JV172765; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15583.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-1627 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-1627 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; ea378bfb2cc9c7f4fd3e1c6153248005. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..1627 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 1627 BP; 524 A; 317 C; 305 G; 481 T; 0 other; gaaaaatctt tgtacccatt ttccattttc agaagttata aataatattt aaaaaaaaaa 60 atctttctag attagtacct tcaaagtttc ctagagtcag gcctaagttt tcaagaacag 120 aaatgaaact catataaaat tctagttcct gagaagagct aaacaccaga tcagtattta 180 atcaataaaa taaataaata aataaaatta gcatgtattc ctctctgttt tattttaaac 240 agtggtttat caatatacat aatcttttca gtatattgta aaattaggaa tgcattttct 300 agctatagtt cctttcactt tgctaaattt cagacataaa cacaaagtaa aggcattcaa 360 atttttaatc ctttagacaa ctacaaattt tctttaaaca tagtaaacat tacagaaata 420 tactggagaa acccaacagg tgtgaaaggc aaatgaaatg gcaaactcct tattcctatt 480 ctatcagaag gactgagggt ttttttggct aattttgaaa acagaaaaaa aaattattcg 540 gtgactcaaa tcctcacaaa cctgaatcct ttgattttta gcttatatca aacttgattt 600 ctttgttgtt tatgataact tctgagtcaa aatctgtatc aagcctttat gaatgcaggt 660 cagagagtgc aatacaatcc ctggatgtct taagcatatt tttgatgaca taaagcttga 720 ggtgcaaaag tgacatcagg ttagagagag caggattgca atgtctcaag aaaacattcg 780 ttaggggaag attttcgtct gtcagaatgg cagtgtagaa tgtcaccaac caaaggagcc 840 tgtgatcaga cagcaactct tcttgcagtg ctttacactg cagccccacc acgtggtttg 900 aaacagagtt tcttattctt gtaagcagtg taggctgcta tggatccaac aatcagtatc 960 acaaaagcag aaattacagg agatgtaact ccagcaatta aacctgaatc tgtgttccct 1020 ccatgattga aatgatgctc ctgatctcct ggtggtaaag gctttccgcc aatcagatct 1080 gagtcatcaa aacctccaga attgccatag cttcctgggc gtggtggaag aggtgggtat 1140 aaaggttttc ttgagatgtc acccccacca agagcatctc ctaaatgcag atcgttgttg 1200 tacacaggtc ttgtcggtct tctgatcact gtgggtttcc tggtgatgat gtcatcaggg 1260 tgatcaaggg catcagctaa atcaaaatca tcttgacctc tcacatggac taggaggaag 1320 ccaaggcaca aaagaaaaag tacttctgaa tttctccatg ctcttctgtg cagtgccttg 1380 attgcaccag atgttttttt tccaagcagt gatggtagat gttgcaactg cagtgccaag 1440 gtttgaggga gacacttgga ttcacctctg ttcaaaaaag tttcctaccc ctacacccaa 1500 gctctgcaag agagaaacct tcttgcttac aaggcaagta acgaaaacaa gcaaccctgc 1560 tagagccaag ctgtgagcag cacattaggt gccacctgtg ctccaagaaa gttatttatc 1620 gtccagg 1627 // ID JV172766; SV 1; linear; mRNA; TSA; VRT; 912 BP. XX AC JV172766; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15584.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-912 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-912 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; 722517a59eda6fe9866b15ca792484db. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..912 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 912 BP; 244 A; 202 C; 258 G; 208 T; 0 other; gtggatgcgc aagctcgaag aggttactga ggaagagtac gcgtcgttct acaagtcact 60 gtcgaacgac tgggaggagc atctcgccgt caagcacttc agtgtggaag gttagctaga 120 gtttaaggct ctgctgttcg tgcctaaacg tgcgcctttc gatctcttcg agacccgcaa 180 gaaacggaat aacatcaagt tgtatgttcg ccgtgttttc atcatggacg actgcgagga 240 tattatcccc gagtggttga actttgtgaa gggtgtcgtg gactctgagg acttgcctct 300 gaacatctcg cgtgaatctc tccagcagaa caagattctg aaggttattc gcaagaacct 360 cgtgaagaag tgcttggaga tgttctcaga gatcgaagaa aagaaggaga actacaacaa 420 gttctatgag cagttctcca agaacttgaa acttggcatc catgaggaca gcgccaatcg 480 tgctaagatt gcggagcttc ttcggttcca cagcagcaag tctggggagg acatggtgtc 540 cttcaaagag tatgtagacc ggatgaagga gggtcagaag gacatctact acatcaccgg 600 cgagtcgcgc caaacggtgg cgaactctcc gtttctggag aagctcacca agaagggcta 660 cgaggtgctg tacatgactg accccattga tgagtacgcc gtgcagcagc tcaaggaatt 720 tgacaaccac aagctccgct gttgcacgaa ggagggtctc gagattgacg agacgaggag 780 gagaagaaga agttcgagga attgaaggct gagttcgagc ccctccttaa gctcatcaag 840 gaagtgcttc atgacaaggt cgacaaggtc gttctgtcga acagaattac ggactctcct 900 tgtgtgctag tt 912 // ID JV172767; SV 1; linear; mRNA; TSA; VRT; 1383 BP. XX AC JV172767; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15585.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-1383 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-1383 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; ac213c8919b51f130cb500477bff165a. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..1383 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 1383 BP; 424 A; 343 C; 291 G; 325 T; 0 other; gcattcaggg agcagcattt atacccttgg aagctgctcc tcagaaccaa ctgagcagat 60 ccatcccagt gccacggact cagctgacac tgaggagcct caggaatccc ttgcccacac 120 tgccatgggc tttcccagct ctgcaatgca catgcaaggg tcaggtcagt acaaaacaac 180 tggaatgttt gctgttcaat tcagtccgtt tgctcctata atatcctcca aatgtgccag 240 ggattaaatc agcctccagt caaaatcaca gtgaaggctt catcaaatta accacgttac 300 ctttgctact ctgagtcccc ctcagacaat gggaagttcc tggaaaagag gctctcaagc 360 caagcattca cttattcctg cacctttcag caattttaaa ttgcaagttt aatcctatta 420 tagatctacc ccagaggtct caatacaggc aacaattccc catctattcc tgctatttaa 480 cttcattaca atttatccac atcatgtaaa catcctcagc tcaactgcga gtatccaatt 540 aaacccacag acaaataaca gttaaacatg gcacgagaat gttttgtatc aagcagagga 600 ttagttttat ttccaggcat gagaaattta aggccagatt tctcaagaat acaattaatt 660 tgggaaaaaa aaatcaccat cagcacatgg taccactgct tgtcttctcc tcacagttta 720 ttgcacacat ttttgtccag tgcaaacaga acaggggtga acagcacaat gacagacaag 780 ctaagacctg caaatataaa gagttattac agataaagtg aacaggaaat gtgattccat 840 gacccgtaaa aaacagaaat tttcatcaca tctggagtta acagtcaaaa ttgacagtac 900 caaagaggag tataaattgc attaggcact ctgttaaatg gaatagtaga aaaaccacag 960 gactttgaag aagccacttg aagaacatta gaaaggttaa ggcattactg caggcttcgt 1020 atccaacagc tacagaaagg gcacctttgg gtcactgcag gtttcatctc ttctgcacct 1080 gtcagtgagc tgcagcacag cgcagacatc ctcaaggcca gtggtatctg aggtaccaga 1140 ttgtttcatt gcttaactga ggcccaaaga gagggttgag ttgagccaga attgcaatca 1200 gccagaacag gtagcagcag acagcacagg tcaccagcat ggtgttgata actccgcggt 1260 tcggcccctt gggtacgagc cagggcagga cgccgccgac caccccccag aacacgctca 1320 tgacgatgat gggcaccgcc aggccgccgt acgccatggc tgcgctctga ggggagcagg 1380 ggc 1383 // ID JV172768; SV 1; linear; mRNA; TSA; VRT; 2817 BP. XX AC JV172768; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15586.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-2817 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-2817 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; 61459ec7b47d6c899f0b6b3a1dc8a215. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..2817 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 2817 BP; 823 A; 644 C; 500 G; 850 T; 0 other; catttcacaa agcagctgaa aaccctaagt ttttacaggg cagttaagga ggttcttata 60 ctaaaatcca gaattgtatg tggatatact tagagaatga agacccgcaa gttttttcaa 120 aattcttcca tacaaaacac atccaagtgc agccatgaat gactgactat cataaacaat 180 tctaaacagt gctactcaaa aagaaaacca tgggtatatt gcaacattac attatggcaa 240 atttctaaac tagaaattat aataaacaaa ggcaagataa atagatgcca gccagaacct 300 ttttcctcca ctgaagaagg attttcattt cccttaagaa attcatttgt ctaagagtaa 360 cattgagaat gtaaggattg tatgaaccaa tctcaccaga atccattctt aggccttcct 420 aacgatttct agatcaaaca tgctttccaa gcaaaaagag ctcctgcata gttgctataa 480 gtttgcctgg aagatagtac caaactgaga ttctgttact tcataacatc agctacaaac 540 tcaacattgg aaaaaagaaa aaaggcaaaa atgagaagta aaaaaacata aagcaaacaa 600 cacaattagc ccaataacag caggtgtcag agccagaata caatctggtt tttttgaaat 660 tatttctcat ttcttcctca atgatttgtc ctgacacctt acatcccaca tgttgaataa 720 acacttcctt actttttcta cactctagct aaaagtaatt gaagaaaaga attgggagag 780 gaaattaaaa gtcacaggag tgatctcaac atccactact caacctgtgc ctcgagaatt 840 cattgcttat ctgttctact ttccttctta ctcttcttgt accttattga ctcatccttc 900 aatgtacctc tgcacctcat tctctgtctg tatgattctc tttgtcctct ccatcgcctc 960 aagtgttaca gataagccac ttcagcaaca tctctagaaa gtgttcaaaa gtcattattc 1020 atgcttttat aaaaatatca ccttacacgg tttcttagtc ttcctcaaat acccaatttc 1080 tctattctta aggtcaattc agaatgccac atattgatct gtaactcaat gactttccct 1140 gctctttaga cagagaaaac ttgtgtttaa agagactaag cagctgacaa aatatatatt 1200 taaaagactt attgtccaga tccttgtaac acatttgcaa gttaagcaaa tagcaaaaag 1260 atgctaaggc aggatgacta cagaagtggg aagggatcag cctaccttca atggctattc 1320 gcctcttggg ccagttttta ttctctctgg ttaagagctc ttgtacccgt atgctgatga 1380 catattcctc caaagcaaac tccagtgtgt aaaacttcaa aagttccaac cacaattgcc 1440 ccagtgaaac ttggtgaggg gttttgaacg ctaagagaga aattccatgt ttctctttcg 1500 cattgctttg gttgtccact tctgagcttg ttgccttctt gccaccacct ttttgttgtt 1560 caactttagc tttgctttct gctccaacag agttttttgc tgcaccattt gtgggcggtt 1620 tgtactccca ccttacaaat tcttcatctt ccaccccttt cagctggtgg tcatctggcc 1680 tctttgaatc aaagccttca atccaattgc ccaaatagga cggtaaaata cgcggttttc 1740 tttgttgaag aaaaaatatc accattaagg caaaggaata ggagggaatt ccaccttcag 1800 cctgacagtc aatgtgacag agtctggccc agtagcggaa agccaacacc aaggggatca 1860 ggacaggctc cagtttgcca agtgcagcca gcaggtcagt tgtaaggcaa gccacgtcat 1920 tcctagcact cactttgcat gtcaaaccac ttttaacatc tttgcaaaag acaacaggaa 1980 ctttggcatg gaaatccgac tccacatctg agtagacagc actgttcttc aagatctcaa 2040 gcacctggat cagaacatct ggttgactca tcttaggggg gaatttgata tcaatgttaa 2100 catcactggt cttaaaagca aatctagtta agcaggagcc atacatcctc agggaacagt 2160 ctggtaaggg ctgctgaata attttctcca tctcatttac aatctcttgc cgaactctga 2220 agtcctcatc tgagatgccc tgttcgtttg ctgcctggat gagagtgaag ctcagagcag 2280 ccagctgtgc aggcgagggc ggcggcagcg cccgcagctc gttctcctct tgcttctcca 2340 ttatattttt cttatgacgt ttttccttaa tatgcttgtg ggctccctgg atattttcaa 2400 tgtgaactaa gcagagcttg catagatact gacagttggt gtattctggg gagcgttttt 2460 caagtcggga gatataatct ctttccagac gttcttcagc ttgtttcaat cctagttgct 2520 gttcaactgt cagattagat tcatcaataa caccagtgtt ttctaaataa tccgcttcca 2580 atgcatgttc ttttgttgat tcagaattct ttattttact gaagtcatca ggcttatgct 2640 ccatttttct ttgatctgca gcagtcttac caggatcacc agcctgatca acaccagtct 2700 tcaaagtatg aactcccact ggattttcca gcaccagttt ccctttctga ggagctgtta 2760 agctttccac actgacccca ttccctgaaa catgggagcc aggagcgttt tccccca 2817 // ID JV172769; SV 1; linear; mRNA; TSA; VRT; 720 BP. XX AC JV172769; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15587.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-720 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-720 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; b21ac0c603e352dc99f0bafb4a2bf207. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..720 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 720 BP; 180 A; 186 C; 186 G; 168 T; 0 other; tccgacgtgc ttcttaacca agtccttcag gcggcgctcc tcaagatact cgccctgatc 60 ctccttcaag tggaggataa tacgagtacc acggccaaga ggctcgtatt tgtcatcctt 120 ctggacagtg aaggacccac cagcggcaga ctcccacacg tactgctcat catcattgtg 180 cttcgagaca acagtcacac tatcagccac caagtaggca gagtagaagc caacaccaaa 240 ctggccaatc atagagatgt caccccggcc tgcagagcct ccatgaaggc cttggttcca 300 gaacgagcaa tggtaccgag gttgttcacc agctcggcct tggtcatacc aataccgctg 360 tcctcaatgg tgagagtgtt gttggttttg tcagcgatga ggcggatgta cagctcgggc 420 ttcgtcttga gcttttcagg atcggtaatc gcctcatagc ggatcttgtc caaggcatca 480 gaggcattag agataagttc cctgaggaaa atatctcctt gttgctgtag aaggtgttga 540 tgatcaagct catcaactgc tgaatgtcag cgttgaaggc gaaggtttcc ttgttctcca 600 ttttcgcagc gagaatggaa tccgagacga gaaaggcgca agttcgattt aagggcaagc 660 tttagaggac aactcccggg gcctacgcca cagggaaccg gttatcgacg ttaacgagag 720 // ID JV172770; SV 1; linear; mRNA; TSA; VRT; 539 BP. XX AC JV172770; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15588.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-539 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-539 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; df4fd8ceb137f346999690f557c616a6. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..539 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 539 BP; 201 A; 92 C; 102 G; 144 T; 0 other; ataatatttt cacggctata gtctacatct caaatatcca cacagaaacc acaggaaggg 60 atgatgtcag aagacagact ggctgctgga ggaaaacaga gacaggcaat gaagatgagg 120 agtggagcta gttaatcagg tcttcaattt tgcctgcaaa tacacagagc ccataaagtt 180 gctgagtcac tgggaatgga cagcaaaaaa aggaaaatgg aggagattta ctttgtcagt 240 taataaagat aacttgcagg tcatatgttt gaaaatactt atacattaaa aaaaatggtg 300 taataagctt ctaccaaaga ggtagagttc aataacagta cagtttagaa aaaaaggagc 360 ccaaattaac acagctactg tcaactagac ctccttaagt ttaatacttg cttataatac 420 ttattgttaa ttctttgcat ggactgagcc ttcaaagtga acacacgaac atacgtacaa 480 atgtaacata ttattaatca gctgttccca gcagaattag tattcaatat ctttacctt 539 // ID JV172771; SV 1; linear; mRNA; TSA; VRT; 2212 BP. XX AC JV172771; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15589.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-2212 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-2212 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; 5d2b760457e59e096fe688bb29033d7c. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..2212 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 2212 BP; 613 A; 457 C; 375 G; 767 T; 0 other; tcattttaca aaaatatagt tacacataat acccttattt cctgtaatta attcaatgca 60 gaattcactg agaagttata caatcttcca aaaaatactt atttaagttt caagttattc 120 acatggtaat ttgtaggtaa tttttattaa aaaaatattt aacataactt atagcacatt 180 aaggctgaaa cacatttata ttaagttcga gatcaatttc cataacatta agttgttcct 240 gtgaactact ttaaatacct gcaatgaata ttgacaactt ttccttcagt tctaatttcc 300 ctacaaaacc gaccagtgtt ttcaatggag ttgaacactg ttctgaatat ttttcaaaaa 360 tgcctgtgtt tttatttctg gtaaaactcc ttacaccttt atgctttggt ccctgaggca 420 ggctgtaatg ccttatcaat tgcttctaat aatatctttt taatgtttat atatgacata 480 tttctcaata acatcttatg gaaattacta acattctttt catatacctt gtcatataaa 540 gacctaagat ttatcccaac tctttcctaa tacagagcat taataactaa acgggcatgg 600 aattacatct tttgtcccag tctttttgtt ttgttttgtt gaagtcagcc ttgtttacca 660 gaaatacata acaagtgaca catcaaaaat gtattttttt cagttttcag atgtcttgat 720 aagtacctca ctgagtattg cccagactgg agagtcagag ctgactgata aacgaatggc 780 ctctattctt cctattgcct ggctgatgct gccttctgct gtgccatttt caaaagcccc 840 tatttttaaa tatccgtctt ttgttgctgg gtagttaaat ttacttccat tgtgaatcaa 900 ttcttttctt agcgttttat cagctggcag cacttccaca gtggtgttaa acagtttatc 960 accagggtgc tccacgttcc cacttctgaa caagtacttt tcaacttcta gtggatttaa 1020 aaatgtgaac ctgatgtagt cacctgccac tggagctaaa ccccaaaaac agtcttgtcc 1080 tttgtaaact ttttccaggg tatattgctc atatattttt aggcttgtgt ccacttttgc 1140 aggtggatta ttatgtgctt tatgtagcaa catttttcca aaatctttat ctttcaaatt 1200 ctgtatcttc ccagccaagg atgaaaaggt tcccacgtgc tgaaagagag atggcttagc 1260 acggacacgc aactttgact tttccttctc acagtgtgtt gcatccttct ctggattgca 1320 cactttaacc cagagcaggt ggtctatgag ccagtctata ggcttatcct tatagaacat 1380 gagaaaaaat tccactattt gtggtaagtc ttctgattta aacaattttc caataaatcc 1440 aagctgtgag aactcaagaa ccatccaatc ttgggactgc tgagcagcaa agctttttat 1500 gctctcaaca aaatcaggct tggctataat atcatcttcc agctgtaaat aaaatgttcc 1560 cttaggctga gcatacagca ttaaaaagct atagtccaaa ttctgtttag ttctccacct 1620 tactcggtcc tcagaatctc cgagcgtttt ctgcaggttg gaaaggtctg ggtaatagga 1680 agcaggagga gaaacaacct ccaggactcc agactggact tctctgggga agctggtttt 1740 aacactttct gcaacactct tcacatactc tgcatccacc tctgctacaa agatgattat 1800 tacacagtcc ctcttctgct cctcagagag ttggtacagc agggaatgca gagtatcaat 1860 caggtaattt tgtttttccc ttttcactgt aggaataccc atcaccaggg agactccagt 1920 tctctgctgc ccaaaaataa catttgggaa aattgcatct tcatattctc gcaggtgagg 1980 gagatagtag tagatatttg tgaggtgcat ggggagtttt ccgggcaggg ttaactcttt 2040 ccactttaat tcacctgtgt gattttttgt catgttcatt cctcttgcag ctatattttt 2100 gatttcatgt agggcactgc tcagttcatg tgattctttt tttgtttcca tgtcagcata 2160 caacagtctt tgctgaagtt ccagcagctg ctgttcgtac gtatctaagt ca 2212 // ID JV172772; SV 1; linear; mRNA; TSA; VRT; 976 BP. XX AC JV172772; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15590.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-976 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-976 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; ecb3eda27d9d363c68999ec9ddf7c18c. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..976 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 976 BP; 243 A; 244 C; 211 G; 278 T; 0 other; tttctgcttt gtttttctcc agggccctgc agccaccaag caggactggc agctggaatc 60 ggctcagtgc tgtttgtgga gcaggatctc acctggagct caggcttgag gagctgtttc 120 ctccttttta gaggttaaaa acattggcct taaaggaggg atttgttaga gaagctgctc 180 tgctcttttc ccctcaattt tttctttttt cagttaaact ttaaggaaag gctgaggatt 240 gcaaatgcga tatttggcta gggaggattc tagcacgagg aaccacaact cttcctcttg 300 gtttgaaaag accagtctat ttaaggttca aacccatctg ttgctccatc cccagtgcag 360 ctccatccct tttgtgcctg gctgccagca cagaggatgc cacttttcct tcatctggct 420 caaacccatg gtgttgctga tggtacagca cagattattc cctaaatctt gcttgtgtga 480 ggatgtgaca tctcaacaga gctccctgcc aatgctgtgt aaaaaacact cccagatgat 540 gccaccgtca cagacagaga catttgcctg ggaagttgtt gctgccttag aaaacaggaa 600 aagggcaggc aaataaacct cctcctgctc agctccctcc tctaatattg cctgctacct 660 gctggtgtcc tcaaaattta atgccagctt cctaatcagg ggtattgtgt cttcctgaac 720 ccaaaataat cccagatttg agtggcaaaa ccttcatatt ctggggtgtt ggggagccat 780 ttaattgtcc cttaccatgg agtcatcaag gtgggaaaag acctccaaga ccatcagatc 840 caaccttcag tcaaaatacc cctagagcca caaaaaccca ctaaaccatg gggtgaagta 900 tcagatctgc tcagtttttg aatgtttcca gaggtagtaa ttccaccact gtttttggca 960 gcctcttcca atgctt 976 // ID JV172773; SV 1; linear; mRNA; TSA; VRT; 1758 BP. XX AC JV172773; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15591.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-1758 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-1758 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; 3dcd7fbdc34a05adb76dbfef61779705. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..1758 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 1758 BP; 365 A; 411 C; 320 G; 662 T; 0 other; tcatcatcca cttgtttcag gtcagggtca tcttcagcat gtggctcttc agattgcaat 60 tctgctcttt gtgttgtttc tttagccaaa tctttgccaa gatttctgtc tgatcctgcg 120 ccctcaggat gagcagttcc ttgacgagta agattatctg tattagtgtt ctgcgtggcg 180 cttttttgat ttttcttcag gggaattttt ctcagtgctt tctttaaaca ctggcatctt 240 gccaggattt cttgaaagtt tttcattcac atctgcctct gaatactcag tctcattttc 300 ccatggccta ggttgctcaa cagctccact atagcttggg tctccttcct ctgcaggggt 360 ttctttcagc tttctcttta tttccagttc tttgttagaa gaggcaggat ttttattttc 420 atgatcaatt ttccctactt gttttaaatc ttcttcatgt ttgagaagtt gtttttccac 480 aacgggcatt tcatgctcca ctttctgtct caagaggtca atatccacta ggtcatcttg 540 agatgcattt tttacttcct ccactggttt ggctgaaaca tcagctggag gcttgttctc 600 agcttctccc ttctccattg ttttctccca tggtcttttg tactttaaat cactttccaa 660 ggactcctcc gaggtattgt cctcaaactg tttctcactt ttctctactg aagcaagtgg 720 aactctttca ggacttttac tgatatcatc atcaaatggt tctgaatcat cttccttgct 780 tttaagaaat gatttggact ctggagcact gcctggacta ggcaaagcat gaggatcagg 840 cacagctata cctttcagtg ctgcagaatg tgactctgtt ccatcaggga gctgctcttc 900 caactgttca gttttgttgg ccttttcttt tgaatccaga tcacctgtac ccacaggctc 960 ctttccaagg agttgtttgg agagatcctc aggctgagtt gttgctggtg cttctctttt 1020 actaattagc acaacctcct cctgtttctc ttctgtttgt ttagattcag acctgtctac 1080 acttacactg ccacccgagt tcctgctcct actgaaggca tccttaagaa ttaatgcatc 1140 tgaatcacat tcctccccat tgtctctttg gttatttagc tttgtagcac cctttgcatc 1200 ttcattgggt ttgtgatatt gtgactccac gtcattgttt ccatcatctt ctaaatccac 1260 aggggatgta atttcatcct ctgccataaa agacagcaaa gggatttctg cagactgatc 1320 tgcaaactct ggctcctcct cttcattgtg aggattaatg ctcaaatctt catttaaatc 1380 atcttccagt gacgttacaa ggcgagtcac ttcatcatct gatacaatag catcagcagt 1440 tgagccaaat tttgttttta agttcacaga gagttctctg tttaaaagtg tataggcatt 1500 gacttcattc tcttggtcaa gttggctggt ttcaccctga ggaatactag tgtttttggt 1560 attttcactt tctagccctt ttaattttcc atgtagcatt cctttcaagt gctcatgtgc 1620 aatttgatct ccctgagagt tttctttgtg actactgaca ctggagtctt ccccagtatt 1680 ttcagttcct tctgtatgag aattgtcaat tttgtctgtc aggacaaggt tttcgtcttc 1740 atcgctttgc tcaagatt 1758 // ID JV172774; SV 1; linear; mRNA; TSA; VRT; 777 BP. XX AC JV172774; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15592.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-777 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-777 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; ae5ccb0899569ce4cc356c103972a54b. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..777 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 777 BP; 150 A; 214 C; 198 G; 215 T; 0 other; aacccattta ttgccatttt tgcttacttt tatcccattt attcccattt ttggtcaatt 60 ttaacccatt tttaactcat aaaatttcat ttttcctcat ttttacccca tttattccca 120 tttttggtca ctttgaacgc acagaaattc acattttttc cacagcacga tgacagcgag 180 ggctggggga ggaattttgg gcatttttgg ggatttttgg gggaaatttg ggcgattttg 240 ggtcattcca gggattgcag catcaggagc tgcttcagca ccttggtctg gctcgtctcg 300 cggatctccc cggccaggaa catctcgtcc accaccgtgt acaccttgta gaagttgaag 360 acgaggtcga gctcgcagac gttgtggaaa tactcattga gcacctcgac gaagttgtgg 420 atggcctcca ggtaggccag gttgttgtcg gtgacgtcga cgcagatgca gaaatagagg 480 ccggcgtagc gacggtaaat gatcttgaaa ttgcggaact cgacgaagtt ggtgtgcttg 540 gcgtccctga cggtgaccac ggcgtgaacc tcctcgatca gcttctgctt ctcgtcgtcg 600 tcgaactgca tgtaccactt ggccaggcgc gtcttccccg cgcggttctg gatcaggatg 660 aagcgaatca tgtcggtacc ggcccgaggc cccccccggt tccgatcccg gttctgatcc 720 cggttccgat ttggctcccg gttccgcccc cccccactca gagccaggcc ccgccgc 777 // ID JV172775; SV 1; linear; mRNA; TSA; VRT; 478 BP. XX AC JV172775; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15593.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-478 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-478 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; 8f08c9b8f17f0505bd4e74b8314db6ce. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..478 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 478 BP; 128 A; 73 C; 108 G; 169 T; 0 other; ggggaaacag tgagaagaaa gaggagtttt gctgtttaat tgctgggatt aggagtgaga 60 actgtttagc caggctttca tgttcatttg catttacctt ggcaaatctc ttgtgatgca 120 ttttccaggc atgctgaagt tccagtttga aatctctgag ggtcacccaa gtgcccagca 180 tgttcaaaat ttcagttttt aagttttctg cctttaccct cctgttaaaa aggaccagta 240 aagtattggt caccttcttt tccaagtagc attggaggcc tatgtagtaa atgcatgaga 300 agtgtgaacg ttactgcttt tgggtattgt tgctaccgct tttaaaagaa gagtagtcct 360 agagattaat ttaaaaatta ttattattgt tgttttaaac acgtgtttca tgctttttca 420 ctgtcagaat attgctgtaa gaatgatatt catgtgttag actgaagtgt aggatgtg 478 // ID JV172776; SV 1; linear; mRNA; TSA; VRT; 2059 BP. XX AC JV172776; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15594.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-2059 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-2059 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; c091d2dc9532c84406399c55a19005b8. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..2059 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 2059 BP; 543 A; 471 C; 481 G; 564 T; 0 other; agagcatcat ttaaatgtct ttgtggccaa gctaagaagc tgccagacgt tatcatggac 60 gtgaagcatt agcactgtaa aggaatataa tgcttttcct agatgcacat cttgcaatcc 120 aaaggttgga ggtggcctgc ccagccaaca ggtcgggatt aatgcgtgca ttccccccac 180 tgaccatgaa cacttgggaa ctttggctcg gcccacggct gggtaaaagg aattgccctc 240 atgccaaaga cgctgctgtg tttagcatga accatttcgg aaggaaaagt agataaaaag 300 tcaagagggg cagaggggaa gttgggaaaa aaaaaaagaa aataaatcaa ctgaaaaaaa 360 aagcccaaaa gacacctgct cttctggctg gtaaaataaa gcatcttctt tcttaggtag 420 cagctaccac agacagcaag agtaaacaaa actaacatac agagatccaa caaacacttc 480 tgactaataa cagaggtgac agatcagcaa atctcttctg cattcaaaat ggttcaattg 540 cttcagggat cttttcccac tttgccctaa accccttatt ctattgcttt gcaatctagt 600 caagccataa aatcgcacac acgattcctt tcttaaatct aaaaaagggg tgtatgcact 660 agttcataat acacagacaa gtatactcta ctttgttccc acaaatgcag gcttacattg 720 atctagctac tttgtatgct tttataagca tttaatatca ctgatacata atcaaatagc 780 aattaccaaa tatatcgtgg gattcccttc tgtagaacat cacaggcacc aaacgctttt 840 ttttttcatt attcagtttt tgttactttt tttttgtttt tctttatacc taaaagagct 900 ttaaatatgt tctacgtggg agcagattaa aaaaaatttc actctaaaaa taataacaaa 960 aataaaggtc tgggggagca agcgtgactt ggtgtgccga tgtcctcaca ggttgatgtc 1020 tctcacatct gtgggagtgc tggcctggtc cagttcatcc actgtcttgg aggggttgct 1080 ctgctgctgc tgctgccgga cttgctgcag gctgttcacg agcaccgcct cgatctgttc 1140 ctgacaagct ttaaggcagt ccacatctgt gtttgtgatc ttggccagga ggtccgtgag 1200 gctgtcccca tcatcgagct gaaggccaca gatggctgct cccacacttc cagttgctat 1260 cattgatggt gggtacatgg caaagttaaa atctgtggca caaagggcga tgaaggtttg 1320 tgcatgcttc cggatcaaaa gcaacttgtc tttagggaga ggcaccttcc ttaggatgtg 1380 ttcaatgaaa tcatgtgggg tgacggctgc aaggttccac ttcaacttcc ccagcaccac 1440 cagctcccat tccagcagct cttggggttt gatggaattg tccgtgtata tgcacagctt 1500 ctcggctgtg agggggattg tctctttcag cttggaggcc aggaacatgc acaccgcccc 1560 cagcagctgc agatggcact tccgagtggg caccacagct aagaatctgt ccaagtaatt 1620 catggccaga gggaaaactt cttcttcgca cttctgctct tcgcagacct ccagcatcca 1680 agtggccacc atcctcctca tgaagggctg gatgtccttc tggacgcact tgaagtagga 1740 gcattgaggc agataccttt cctctatggt tagtaagttg tgcaaaacgc ggtcatcgta 1800 gagcaagttc gggtcaggca gagctctcct catgggatcc acctcgcagc acagcagctc 1860 catgtttcca aagagatctc cctctttctc tgatgggaaa ggttttttcc ttttttttct 1920 tttttttttt ttttggtagg gggggaaggg ggtggggata ggagaggggt aaaggaggag 1980 gggtaggtgg gtgggaggaa gacggcaggg ctttccagct cgctcctgcc tcccttgaaa 2040 cttgtctctg cctctcttc 2059 // ID JV172777; SV 1; linear; mRNA; TSA; VRT; 990 BP. XX AC JV172777; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15595.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-990 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-990 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; f1154d475a2851c79a94e98e9d8af828. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..990 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 990 BP; 337 A; 184 C; 166 G; 303 T; 0 other; cacaaggaaa acaagagaaa cttatgtttg actgcttagt ttgccaccct cttctatcca 60 ctgatggaac acttttatag agtttagctg cttcacactg cttaccatca catgaaggag 120 aacttgatgt agctacaaaa aaaacctatc tatttttaaa aacagtttca ctaaactgct 180 tcattaagca aagcaattag acacacagca ataaacttgt catgctgaag gctgacaaac 240 atgaaatccc ccaagactgg aattagaggt caaagttttt tgaaaaaatc cataatttct 300 atacctgtgt ttttcacaaa tgttacagta agagatttgg cattaaattc actgtaaaaa 360 aacttctcaa atgtgtttat aaacatgttc gcagtgtgta tatgtggacc tcttacaaat 420 ctgcatcata aagtgggtca gtaaaaggat tgcatttaag tgagagaagg ggtatggact 480 tatatgtaaa aaccttctcc taaaagtact ttgaggtatt aaaggtctcc tcatttcatt 540 gtttctccag tcagcttgaa agacatccag tttttatatt taagaacaag cagaaaatga 600 aactgaaact ctacagaatg tttcaaagct tgccattttc acattatagc tcactaatcc 660 tattcaatct ttctactact tcagacatga ataactcctt gttcagtgca gaagcagacc 720 tacacagtca gtaaaccttt gagaaattat tagtagatca ctggatatta cacccaccat 780 gttaactcct tggttaaata attttccact tttacccaaa gagcaagggt tcactgtctg 840 gatgctaaaa gcctttgaaa caggattcaa gtcaacatta ttgctgttct acaagacaaa 900 gcattaatta aaatgaaagt aggtatggtg gagattgaga aagtgtatta gttcactttc 960 cagagtcatc acaggtagta ctggggtctt 990 // ID JV172778; SV 1; linear; mRNA; TSA; VRT; 613 BP. XX AC JV172778; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15596.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-613 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-613 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; 754b274549bfab11b7233bcbc0ec4cd7. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..613 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 613 BP; 242 A; 110 C; 91 G; 170 T; 0 other; aactataaga cataccttta atagaactgt tacagaatta tatgatcaat ttaggactac 60 tgataagtat gctgactgtc ccatataaca ggcacatcac caaggaaaat aaagcattgt 120 acttaataac atcaacctac tttatctaga agaggtgaaa ccaaaaatca atgagacata 180 aatgaatgtt gggaaagttt atttttaaac tctgctttga cactgaatat actttgcaat 240 acacattctt acattacttt attaaatgca gaacattcaa acaggtaaat ccagggcaga 300 acaatcacca cttttgcttt aaaacattta atgtcttcat tacagcaaaa ttagaacaaa 360 gcactagata aatgattaaa ccccatttat accaaagtac catacagaat agatactaat 420 agatactatt ctgaagtttg taaaagcagc acagaaatgc ctttggagct tgatctttgt 480 acttcatata cagaatgcac cagtactacc aggaagccaa agctggtttt ctctgaacac 540 taattagaaa ctcagaaatg caagtcataa gggtgggaag aaagacaaat ccttaagaaa 600 agtatgactt acc 613 // ID JV172779; SV 1; linear; mRNA; TSA; VRT; 3679 BP. XX AC JV172779; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15597.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-3679 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-3679 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; 3edf987108657868e481938464c10c85. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..3679 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 3679 BP; 814 A; 866 C; 696 G; 1303 T; 0 other; taaaataaca gcttaaacac cggtgatgtt gatgggttag cttaccttca gtgtactgaa 60 agttgtacac aacctgcttt aaaagaggag accatccctg cgggcaggct caagaaggaa 120 cagaccccct tcggcactga ctacaccaag ggcatgctgc tgtggcctgc acacacacac 180 ctaggaaaat gtgaatataa acagcattta tgctggccat tttgtaaaga caaaaatgaa 240 gccaagtctg ctaaaaacaa atcaaccacc cagtattact gctctctttt ttttttcttt 300 cttttttttt tttataacag atgctttttt ctttttataa tatatacgaa ctgcaaccat 360 atacattagc attgtacttt tgtgcagtct tggcaattaa aacagttcta cagtgaaaat 420 tttcacataa gacacaaaac agaattactc taacatttct aaaagaaata tcggccttga 480 tgttaattca aatgtatcat ttcttcctca actttgcagg ggaaatattt atgtttatat 540 acattaataa ctgctgtgaa atttcttcag tctttgtatc ttaattaatc aaaccctttg 600 aacttcttca tctggtttaa attttctcct ggatgaaggc gtgctgcaga gcctggttga 660 tgctaatccg tttagctggg tctagcatta gaatctggtc caacaagtcc ttcagctggt 720 gcactttttt acgctggtct tcagggagtc gttggcaccc aatcaagtct gctaataggt 780 ccttggttgg attaatggtg ctcataacag ttaccttctc cctttctgtc actttatcta 840 cttctatata cataaagttg agattttgat caaagtgctg atctttgaac acaccttttc 900 gaatcatctt gtttggcatc tttcctttga gatccatggc aagtttcaac atatgattat 960 tggttttgcc aggaaacagt atttttcctg tataaagctc atataatgtg cagcctacag 1020 accacatatc tataccatag tcatagattt ttcctataat gatttctgga gctcgataaa 1080 atctactaac tagataaggt gtgatgtcat tatctgcaac atgtgaagct gagccaaaat 1140 cacaaagctt tagtatcgtt ttagactcgt tcaccaaaat attatctggt ttaatatctg 1200 catgtaggat attgcatctt ttaagaagtt ttaaagccag gaacaattgc tggctgtagg 1260 aacgcacagc tttaatgtgc agcccaacat ctttgccgta cttcttcaac acctctcgta 1320 aattcatact gagtggctca aataccagac aaagatgttg tttgtggtag aaatgcctga 1380 acaaccgtag acaatgaaac ttgtcatcag gatcagcatc attgagcttc tttaaaaatt 1440 ccagttcttt taggccagtt ttttgcataa gttcattgtt cctgatgatt ttcactgcta 1500 cttcttggtt tgctctggcc atgtccctgg ctcgcaccac gttgctgaag actccctgac 1560 cagtgtaacc atagacattg taccgtttat ctagaacttc acctatatta acacggtaat 1620 agccttctgc atctgtccag ttatccctga gattggggtt ttctttgaag tcttttccaa 1680 acccagcagc ccttagacga gcactatcaa agtatgcagc aaacatatca tctgattctg 1740 tgaacatatc gggagctagc agcttcttct gagatgaacc attgttctgt tcaactgtca 1800 tgaggttgtg cttggctttc actgatgcct caaatgtgtc cacattttcc cgttcgtact 1860 ccttaacatc agcagcgact ctttctagga tgtcgtcagg agaattggag cgactgcgcg 1920 tgctgctctg agggctgctc ggctcagatg gtacagatat gttactgtct tctgtctggc 1980 ctttgtattt ctgaacaatt gcttgtcgct gtaatctcct ttgtcttatc tctgcttctt 2040 catcctcttc ttccaaatca aagtcttcaa gattttcatc agatgaagac tcctgttcaa 2100 ctttcatgcc ctcagaaaga ctacctttaa atttgtcttc tttaactttg cttctgctcc 2160 gacgtctatg gccaccacgt gacctggacc tccttcgaag gcgagaccta cttctccggc 2220 ctctgtccct cctccgagga gatctgctcc gccgcctggg agatcggctg cgccgaaggg 2280 gcgttcgaga cctcctccta atgggggacc gagatcttct cctggacggg gaccatctgc 2340 tgggtgggct gacatccttg gatctttcac gcctcgacaa aatgtcatcc ctggtccgtg 2400 ttctgggaga agaaagacgc ctcctttctg attctctcct ttttctttct gctgatctgc 2460 tcctcactct tctaaccgga gagcgggttc gagaggggga cctgctctgt ttcgatctcc 2520 ggtcgttaaa gagaggggat ctgctccttc tggacttctc acgctgcttg ggagataagc 2580 ttctcccctt tgggctgcgg ccaggccgtc taggggacct gttttccttc cctgaagaag 2640 catctttaga tggagattta attggctttt tttctttgtc agtctctgat ctcctaggtt 2700 ttctatcttt ggaccgtgat cttctatctt tggatttgct tcttagttct gctggagatt 2760 tagattttct accacgatct ctgcttttgc tttcatttac aactggagac tttctgcggt 2820 ctcttgattt acttttatca tcggccttat ttctatcctc tggaggagat ttagactttc 2880 tgtttttctc ctgagatctc ctcttaagta ttggagacct agatttcctt gtctgatctt 2940 gagacttact tctcttataa ggacttttgg atttcctcct ttcttttgac ttgcttctag 3000 tagtcttctc ttttactcca tcaactcctg ccttggattt ctttttgtca gatctgtgcc 3060 tagtcctttc ttttgattca ctcttacttg atttcttgga actagtttta ttgtccacag 3120 gttctaattt ccccttagta tttgactttg ctgtaggtct cgttccattt cgtgcttttt 3180 cattaatctc cccctcttct tcagatcctg actcataacc ttgtaatatt aatcccatcc 3240 cagactggac ttttccttcc attaattcat tttcaagttc agctttcagc aatgctcttt 3300 gtttctctaa gtcttccaga ggagccaaaa aatcaatttt agttctttta gctggtccat 3360 cttctttgtc agaggcatca gccacctctt tccatttatg tttcttatgt ttgtgtctgt 3420 gtttatgttt tttgtccttg tcatcttctg aagaatgttt gtgtttcttg tgtttacttc 3480 ggtgtttgtg tttctttttt tgtgtctgct gtgcttgttc tgaggttggt ctgcctctga 3540 cacttcccca ttttcttcat tcacactttt ctccgatgcc tcagcatcct caacctcggg 3600 cggtcgctgc tcgggctcgg ccgcggcggc cattttgaac ttccgaactc cttcgctgcc 3660 gccgccgccg ctgggaggg 3679 // ID JV172780; SV 1; linear; mRNA; TSA; VRT; 638 BP. XX AC JV172780; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15598.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-638 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-638 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; ef7ddb81fa2fcbda44769943743f09b4. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..638 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 638 BP; 209 A; 141 C; 127 G; 161 T; 0 other; aaagcgtgga caacgtcaca ggaattgttg tgctgagcac accaaacccc cagggatctc 60 ccacagaatt gctggatcca cacaaaccat ggcaaactca gagtctgcca tcttgagctc 120 actggttcca tgaattcttc aacttccttt aacaagatca atctgaaggc cagaaattgt 180 atttatttct aggactgact tgtgtcagca aagaaaacaa ctcctggagc tgtaactcct 240 tgtgattcca tgatttctaa ccaggaatgc tgggatggag gcaatgcaag ggaaggcact 300 gcagaggtgc ccctggggtt actgaggaat tgggaaattg ttcagttctc actttttgac 360 caaaaaccac tcaaggccaa accctgtgca agtgctttgt tcaatggatg gacaggcaac 420 acaaactcag actgattcca atcttcctgc acatttccct cacaagctgc ttctgaagaa 480 agttctgaga agtactctaa gaaaataaga cagaacctca aaatgaatgc aatgttagaa 540 atagcatata ttacaaatct tttcttgata ggaacaatca ataagaatac atattagctt 600 aaaaacagtt cagcaaatgt tgctgacctg caagaaat 638 // ID JV172781; SV 1; linear; mRNA; TSA; VRT; 537 BP. XX AC JV172781; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15599.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-537 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-537 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; d73afd5114e54c145dd8e74ec437b041. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..537 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 537 BP; 153 A; 117 C; 126 G; 141 T; 0 other; aagctgcagt gctggggaat tacaggaatt acaggccatg gtttgcccgt gtcttctgca 60 gtcacattgt gcaagatcac tgccagcgac ctgcatcaga gatgggagtc tgcactggga 120 ctgacacttg acttagcctg ttaaggactg cagtgttatt ccaacgaact tgaagtgggt 180 cagaaggaag aaataaggga aaaataaaca actccaaaca tacagatcta cctgaaatgg 240 tgaccctcct gtgcacaaga accattccct tgtggctgga ccacagaagg acatgagagg 300 tttgggacac agctggggtg acctgggaag ccacagggtg catcatgctt cctgtgctga 360 tctgttctcc tccacctgcc cgtcttcctt cttgtttgac ccacctagaa ttaacattat 420 aagcacgtaa caaacatgtc aattggttct ctgtgtaagc tcaaagggta acttttagtg 480 aaacctcttt ttgtatatta tgtatggaaa tagaaaattt gcactaaaaa tggtaat 537 // ID JV172782; SV 1; linear; mRNA; TSA; VRT; 1297 BP. XX AC JV172782; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15600.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-1297 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-1297 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; ce318acd96c9b10f9750f3775baeb777. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..1297 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 1297 BP; 359 A; 274 C; 238 G; 426 T; 0 other; acacaagctt cagtcctgct ggagtcttta ctattctttt ttcatattta tccttttcca 60 gtttttcttt tgcaattaag tggtctctgt gtaaagctat gatgtgtttt aaaagataat 120 ctttccgtga tgtgctgtaa ctgcagtaag gacaaccaaa agaaaacata ctggtatgaa 180 caagcagatg attttggagc tcctcttctg taaagttttc ttgatggcat tttccacatt 240 tatagggaat ctccttatgt ttgtgaatgt gctgaacaaa cgtacccaca tcataggtag 300 aaaagccaca tttttcacac tggaagtgtc catttacaca atgctttgat atgaagtgtt 360 ttgtcaaagc caacaaagtg tatatctgct catcattgca gagctcacat tttactaaag 420 tgctacgatg gatgcgtctg tgctgtttaa acgactggaa gtcattagct gagaagctgc 480 acatctcaca aggatacaga ggcaactcac catagtgtaa cagctgaaaa tgtttctgta 540 ggtcatttgg gctgtatcta atgttatcct tgcacttcgt acaagtgaaa ttcagtatct 600 ttgctgcaga tttcaatcct tcttcaaatt gcacttctgg tttaatttgc aagtggcttc 660 cttctgaaca accgagattg cttccactaa ttttctctag acttaaggat ttcctagcag 720 tttgctgctt acactgaaag agttttctaa acctatcaac ttcatgtttc attaatactt 780 catttggaat gttcaccttg ggcagttcaa tcttcacgtt tttcagtcca taagtgagat 840 tgacatctaa aattgctggt tgaattgtca tacttgaagg atcactcacc agttctttct 900 tcaaagcaat gtctgtagaa aaattcttca tagcattgtg tttcaagaca ctgatttgct 960 ttctgtcaca aaaaaagtgt tcctgttcag atgacatgat tttaggttct acttttcttt 1020 acatgaattc ttgagattga gtcttacttc cggcagcaaa tgagacaact gcaccaagtt 1080 actctcaaag ctctacaact tccccatttc attctcgcgt taagaaaata cttgacttca 1140 attctccaac agctgggtat tttccacacg cacagaagag gtaagattgc aagactcaga 1200 caaggccaca gttaggagaa atactagaaa aagttctcgg gtaccgccac cgtccggcga 1260 ggcgctgccg gccgccatca cagtttccat ccgggcc 1297 // ID JV172783; SV 1; linear; mRNA; TSA; VRT; 520 BP. XX AC JV172783; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15601.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-520 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-520 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; eb92ceb2a94b03c68e5f3e0ac8d1a360. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..520 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 520 BP; 131 A; 128 C; 117 G; 144 T; 0 other; tgtctgaaag caaatacctt tttattataa agcacagcaa cacagaagac aaactacagc 60 tgaggattgt tcaccctgca cgaattctgg aaacacaagc ttattaaatg atcagaagtg 120 caactgtttg acacccacac tgttacattc agctgtcttc tgtcttcaca gtgctcagct 180 ggtatcatcc aaaatgtcta taagtggagt tcctggaacg gtggggatat tcactgttgt 240 ctcactgatg atgttgagga gtgatttgac ttctgattct aggtgctcca ctgtttttat 300 taccttctct tcaataatat ctaagcgttc gtggagcatg tgttcattac accaggttcc 360 tgtttccaaa ctctcaggtg ccatagtgac aggatcagca gcagctaaag ggtcttgctc 420 ctgcaggact agagcaaacg ccagtgccca gaggaaaagc atggttccag cctgcccggg 480 ctgtgccgtg gctgtgctgg agccccgcag cctctccccc 520 // ID JV172784; SV 1; linear; mRNA; TSA; VRT; 1416 BP. XX AC JV172784; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15602.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-1416 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-1416 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; da386a46a7ce94db3385f8bb2e13aa65. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..1416 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 1416 BP; 374 A; 304 C; 258 G; 480 T; 0 other; agacagatgc agctattttt attattttag ctggcttttt cagagccagt taaaaagtgt 60 atggtattgt tcatagaaaa atataaacat tacatattat gaatttattt tggctttgtt 120 cacttaggga aagttcccag aatgatcagt cagtttatta ggataagaag aataattact 180 tttaaacaac acattggatc agaggtatat gtcctgttag ggtttagatt cttataaaaa 240 atagggcaac accagcattt actttttgta caggagacaa agtagttccc ttcatgccga 300 gctattctgt ttctttttct tctttggcac tggagcttcc agcttttgtt tctctggaat 360 aatttttctc tttcttttta atattttaac ccttttagta gtccaaaaat ctttgtttgt 420 cctggctatt gatgattttt catcttctgt ttcttgagat gatgttgcag ttttatcaga 480 gttttctttc atttctgaag cttggtcaag ccacactgca agacacgtca gcctagcttt 540 ggtattgact tcacacagta aagatggccc atctctaatc ttatcaagat ccagattcca 600 cattttaatg taaccatcac tggatgcagt aacaatgaca tgctgtcctt ctctttcaaa 660 actgtaaata tcttttattc tgttttcatg agctttaaat tcacacaagc atttttgagt 720 gtcacagctg tagaacctaa tcatttcatc atctccagct atggcaagga caaaatctgt 780 aataaatcta agtgaagaaa tcctcttctc tgttgtaatg gtgccagtga ttgaagctgt 840 gtcaagtctg tagatatcca ctttgtttgc tatcacagtc acatacttct ctccatcagg 900 ggaccattta attatgtgtg cattttgctt caggtttttg ataaaggccg atcgtccttc 960 aacaagattc caagttctta atgttttatc tgttccaact gacaaagcta atttcccaga 1020 aggatgaatg gaaagagatg tcacatgtcc cttatgtgcc ttaatggatt tcagacattc 1080 ccatctcttt gtgttccaga tacaaatgag cccatcttca gccccactca gtagatgtga 1140 agtcccatag aactccaaag aagttatcgt gccattgtgc tgtagcagcg ccccatgttc 1200 aatcttcttt ttcatgtcat agatttggat tgtctcatct cggctcccag tgaccacata 1260 tctgttattc actgctactg ctgacaatga ggcagtgtgg gcatgatgtg taaaatcagg 1320 gacgactgtc caagactggc cgggccgcgt ggcgaacccc agcagcacct gctcgtagca 1380 ccccgccacc agctccatcc gccaccgcac ggcgcc 1416 // ID JV172785; SV 1; linear; mRNA; TSA; VRT; 1853 BP. XX AC JV172785; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15603.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-1853 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-1853 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; 78603f5debefea4efaae9f8721787397. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..1853 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 1853 BP; 508 A; 328 C; 385 G; 632 T; 0 other; ctccatctca tggccaactg taaaatctta aggtttcatt gcagaatcac ttaaacgttt 60 tgactagcta gaaattttgg ggtaaaattc cagagcaatt caataatcca agctaggatt 120 cctacagctg atggatcagt tgctgaatac ccaggcaagt tcttggggaa gggaggggga 180 gtttaggtat cctggaggaa gtggactttt tatttttttc tctttggttt tgagtatagt 240 ttaaagttct tccctaactg cataagctta actgcataac ttgctttttt cataagattc 300 ttatgtgcag gtcttctaat tgtttttctc tttgaaattc tgtaaatttg tcttggaata 360 aaattcagtc tgataaaacc ctaatcttaa attattggca ttaataacag ccttcgagaa 420 gcggaccgca acaattctga gaacactgct taaaaactaa tgtgagcagg tctcaagaag 480 cctgtgggca tagtctttac tgatcctaca cagaatggcc agacaggttt caggtagaag 540 tgttagaaaa cgttattgcc tctaggaacg actgctgttt gttgctgagg gtcgttattg 600 aagataacaa catgggactt gacattcaca ccattttttg tcacctgttt gttgcacgtg 660 ctgtgcagat ttaaagttga aattttgact aaatttattc tctacacatt tcccttgagg 720 agtaggagca gtattactgc tagtagtaca cgtttcagtg tgctggtaag ctggaggttc 780 atttcttggg ctggtctcta tttcatcatt ggagatgctg aatctataaa atagtgctgc 840 aaaattgcac taaagttttg ggaggaatga gaccccagga aacatctgct atctttatac 900 atcttctctt ggagactttc agcaatgctg tggtgtgtga gaaaatgctt gcagtctgcg 960 accatgctga gttacagctc gtgaggaaaa ggggggattt tcaccccaat tgctcagtga 1020 ctcagttgca tatgttggat tgaatactgg aaaaagaagt cagtaatctc cacagtaact 1080 gcagagcaac tgtatgcagt tgtgatccaa acagttgatg taaaattaaa tccaatcagg 1140 agaaagttgg aacgcaatag atctgtgaat gtgagctcct cacatttgtt cagtggtcgg 1200 tatgtaaatt ttctcagtgg ccattctaga atctgatgga cacctggctt taattcacac 1260 ctgtgaaaaa gagcaaaatt atttacagca tgtttccttg gttctgatgt acagaattat 1320 tttcctctga acagatgaat ttgatctcct ttttttttgt catttggtgc tgggctgtag 1380 ctatcaaaac ctttgctgga gttgtggggt tttgtttttt tcctctcttc aaactatata 1440 gaactcctac ttgcaaaaca tgatttagcc aagaggactt caatggacta tgatgtgaaa 1500 ggcttctcaa atattttgtt tggtctcaga ttttttgttg atttttcttg tgggcaaagg 1560 taattctcta ctccgtgcta gtatattgaa agaaccagta ttttaaaaca tcacttgttg 1620 aaaagctctc taggaagtct ctggctgtct gtgaagcctt actgtaggat actttcaaaa 1680 ccacatttca gaatttgtgc agcctcagaa acctcctctg ttggtatctt caagtttgac 1740 ttcttttgga ctccgtgaac aaataccatt ctgtttttgt atctttataa ttttgtgtat 1800 agatttaaat ctaatttgct agaagctaag actgactgtt agatattagc cct 1853 // ID JV172786; SV 1; linear; mRNA; TSA; VRT; 1512 BP. XX AC JV172786; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15604.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-1512 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-1512 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; a99addecfff38e1c250bb360d8576104. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..1512 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 1512 BP; 370 A; 335 C; 342 G; 465 T; 0 other; cttaggcagt ggccctcact tgaagtagtt ccatagtggc ttaattacag ttccataaaa 60 ggttttgcac acccaactat cccagctcct gccattaaat gctttgcttt agtgacaacg 120 ctctgaggaa ggcagctgag taagctgagt atgtggcatg gcgtgatctt ggtccccagt 180 ggaatccagg acagatagaa ggcaacaaat aacccccttg cattgcacag agcctgtctc 240 agaaggtttt gaaaccatta ataaaaccac ctcaaagctc cccaaggaaa ccgtgttttc 300 ttctccaagt tgcagaggtg atgatctgta gagttgatct ggagggcaca ggagctgatg 360 cagacacctc cccataccaa gcctctgagg ttaggagtca gctcctctgt ttgtgtgtgg 420 tggcagttct gccaaatact tttcagatac agcagcttta tcagtgagaa ggatctgagc 480 tgccctgcaa agataatcct cccagtggtg tgtcagcctc aaagaagggt gtgattatca 540 ttccaaagga gtgtaatgtg aacctgtgcc tcccattcag ccaagtgaag gctagatcaa 600 ggaggcttct gctctttgct cactctttct tttgtttctt ctcttttatt tccttttttt 660 tttttctttc cagcaaacaa ttcatcttca tattaacttc ttttatcatg cacatttaag 720 atgtcctaag agtgagccgg atgtcgtaag gcacagtggt gcttataaat ggatctcctg 780 ctagaccatc agcagagtac taggtggatg agtttctcat cttgggatgc ttggaaattt 840 gctggcaacg attagcattt tacaaagata gggtttctct gcagacagtc tggtggagtc 900 tttcagggta ctttcagctc tcctgtgcct gctgtttcaa cattttgcta ccagctctgg 960 cctggaccac acaaagctcc tgatgtaagg gtgactcacc cctctgagtg aacaggtctt 1020 agagatggat gctgtctttt ctgtcgcttc aagaaaaagg tcttcataca gtgaaatcag 1080 gtgtctgatc tcccaggtct cttgaactca tgcatgtttg ttgttggttt gtttgtttgt 1140 tttccacagg aaggagaagc aaatcaggca gatgggagaa tggccatcct ctaaccatat 1200 tgagtggtgc ttattcatgg gtcataaccc aaagccaaat tgtttgtgtt tgtctgggtt 1260 cttgttctga tcttgcagca atgattgagt tcagcaagca tgcagcagca gctccaataa 1320 acatcatcct ccaacattcc agtgtttatg ggtgtgcctt aattaaaata ttctgccaaa 1380 gaaggaaacc tgaccctctc tggcagcagc cgttaccttg ataggagcag ctgcatgtca 1440 tcttttatca agagagtggt tgctagccag aagacctgtg ttgcttcttt ctggttttaa 1500 cttttaattt tc 1512 // ID JV172787; SV 1; linear; mRNA; TSA; VRT; 2753 BP. XX AC JV172787; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15605.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-2753 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-2753 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; 603d6551b7d0977efec1586c0874ea55. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..2753 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 2753 BP; 819 A; 561 C; 601 G; 772 T; 0 other; catctgtgaa aggcttaaca acactgttcg cccaactgtt gctcccacct caccaccacc 60 aaagggtggg tgtatggaag actggctcct ctttgataac aagtgtttta aagtctttgg 120 ctttaatgaa aacgagacat tgacatggca tgctgcacga aacaactgca ttgatcttgg 180 aggaaatctg gctactatat caaaaaaaga agagcaagct ttccttatgt ccctcttaaa 240 aaatgctgca actgatgctt ggattgggct gaacgacata aaatcaggag cacacatact 300 tgtggacaga tggaagccca gtagactata caaactgggc caaaggttcc cgaagttatt 360 atagcatgga tgattgtgtc tttttgatga agaaccctat tgaacaggca gggaaatgga 420 aagatgaagg gtgtaaagca agcaaaagtt acatctgcca aaaaaagttc tgaccccaaa 480 ctgccgcact accaacccac agatccagcg tttggcttta acaattatgg tgatgaccgc 540 tacgaagtca tcaactacaa aatgagctgg gaaaaagcag agaagaactg cagggaccag 600 tctgcagaac tggccagtat cctggatcct tacgctgaat ctttcctgtg gttacaaata 660 ctaaagcacg gggagcctgt atggattggc cttaacagca acataactgg tggccaatat 720 gtatggtcag atagaagaag gagcaggtat cttaactggg gcagtggaga gccaaataaa 780 aacaaggcct gtgtctattt agatttggat ggtttttgga agacagcatc ttgcaatgaa 840 acgtttccat ccctctgtaa gcaatccaat gagttaatcc ctagtgagcc acctcagctt 900 cctgggaagt gccctgaacc caagcgtggt aggtcgtgga ttcccttccg tgggcactgt 960 tactatgttc acaccacttc tgaggaaagt tggcctgacg cttccatgat gtgcattcaa 1020 atgggtgcct ctctggtttc catagaagat tcggctgaaa tgaattttct cttactttac 1080 ttgtctccac ttgcaagtga cttcagaaag ttttggatag gattgttcaa aaatattgat 1140 ggagaatgga tatggatgga cagaagtgca gtagaatatg tcaactggga gaaaggagag 1200 cctacagtac tttttgatga gcactgtgtt gacatggatg tctcaagtgg aacctggagg 1260 acctattact gctctgttga ccagaatttt atttgcaaaa tccccaaaat tgctgaagtt 1320 gagccaaccc atgattcatc tggcaataat gcatcaagaa acgaagctcc tgctgattca 1380 tcatccagtg gtttaggtgg gatgattttt gtactggtct tccttctact ggctggcact 1440 ggcctcacat tgtattgttt ctataaaaga agacgtgatc gacaaatgtt tacagctggg 1500 tttgacaatg ccatataccg tggtgacatt ggaactcatg aatcaaattg tcttgtgacc 1560 aatattgaag aaaatgagca ggcaacaatt taataggcgg ggtaatcttg ggcttgattt 1620 tgaaaagaat taaagtgttg gcatacacaa gaatccttaa ggaaaaggaa agcaattttc 1680 tcctgtgtaa attctattta attttgcatg gggtgcttct tgctttctct actagcagga 1740 acaagcaaac ttgccaggca gatacagaga tctgctcaca aactttagta cctgggaggg 1800 ttgctgagct ttcacacaaa cctggagctg tgttgtatca gccaacaccc aggcagctcc 1860 agccaccacg cacatccagc atcatctgta ggcacaagaa ctgtgttcat catatttagt 1920 tgtgagaata tagtccttag cgtgttccaa aaagtttatc cagacctgta ggtaccctga 1980 aagtgtcctg ttgatgtcca gcacagactg gcagaattgc acaggtagga caggatgtcc 2040 aagctcacct ggcgcagatc cctgtttgaa gcaagaccag gtcctcgctc agccaggcgg 2100 ctgctccaga gctgtgggtc catgtcttct ctttgctact gaggcaccac agaaactctt 2160 tgtgctgccc ataatatcag aattaacata atttcctcct ctgtttatga ctgatgaaag 2220 cacagtataa attgtatttc ttctgctgta gttctgtaac atatgcattg aaagaacaac 2280 tatgatgaga ggtgggaatg tattgtgaat atagttgttt atcataaaca gtcaagtagt 2340 ttaaacagtc aagtagggat ctcaaaggat gctgcaaaag ggcaggaagg aaagacaaat 2400 tatacttaat tcacacctga acattgacat aaaaatattc ttgatatctc caataccagt 2460 gtagatttca taaattttta ggccattttg tcaaagccta atgaaactta cctttagaaa 2520 gtattttcta atttctaacc aaattcaacc tgtgcaagtc tgttttaaac ctttgagtct 2580 cattctagac ttccatcatg atggagctta tggcattgca tcttatactg gtctactggt 2640 ataattctca ggcttcataa atcttaaaat aggctcgcat acaggtgttt ttaattttca 2700 ccttctgagt gtctttcatg ccaaatgcaa acaaccaaat ggctcaaagc tct 2753 // ID JV172788; SV 1; linear; mRNA; TSA; VRT; 573 BP. XX AC JV172788; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15606.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-573 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-573 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; fcbeba54d89f63b1eb010773db58ab33. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..573 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 573 BP; 159 A; 91 C; 108 G; 214 T; 1 other; aaacaggatt ttggaattac atgcgaaaac tccatggttt ttttggaaaa tggtgaattt 60 caggtggtga gttggagctc ctaaaactca tatcctgcat tttggatacc aggttattac 120 ttttgtcaaa gcaactttaa ttgcttacgg tttcatgctc agatacagtc tgtcaatact 180 tgttatgcta atttaatttt ccagataaat atttaccctg aaattgatga gacaatgagg 240 ttctttccat ttgcttagca ttgcctttct tatttgtgta gagaaatctc cctttgagca 300 tttaattttt atgtttgttt tagaagctct tatctatatg ttagcaagag agacttgtga 360 gtgtcattaa acaagacagt gaaggtaacc agaagtgact atatagatta tttttttaaa 420 gtgggctttt gggaactaga aagttaaatt agaccttcag atattttcac aagtccgatg 480 cagctattga agtgaccact ggcagggctt tggcctccaa tgttactttt tatatttctg 540 aattatttgt cacnttccca cttctgagtc ttg 573 // ID JV172789; SV 1; linear; mRNA; TSA; VRT; 2340 BP. XX AC JV172789; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15607.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-2340 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-2340 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; e31dee3813fb86c5e9ca0c6b393df961. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..2340 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 2340 BP; 565 A; 622 C; 580 G; 573 T; 0 other; attagattca gagctggaca aatcacaaag tgtacaaaat ggagaccaca ctaccagaag 60 caggattgtg ggttgcagca gcattcctat ggcccagaag catttgattg aagtgtggag 120 ggcaggctgg gtcagggtgc tcttactgcc aacggcattt gagattgccc gagaacagac 180 tctgttcaca tcctgacaga gctcagctgg cccacactcc ctgggacagt ggggccacgt 240 ctccaatttg tttggaaagg acagactggc tcgagccagc agtgggtagg ggtaaatgtt 300 ccaaggacct gaaatgctgt gccacccaca tacacaccag caagagccta aaccctcatc 360 atcctttttt ggtcacaaac cttcccacag caggactcta tactgacaac tttgcaagaa 420 ataaggtggt ggtgagatgt ggtgagccca ccatcttcct tggtgggggc ccaacaaact 480 caccacccca gacatctcag actggccagc aacatctacc acaacagcaa tagctagtac 540 agaagccagg gtaacttcaa ctcagatttg tccagtctat gtttaggtct attctacgag 600 tacatatgca caagaacttc aaaaatacta ggatatgatg caagtagtga gacaccaaca 660 gaagaggagt ttaatggtgg acgttcccta gaaagatcac gagaagatgg gagttagact 720 agcccttgcc caccctggga cggggagcag gagctgactg caccctgcac acgactgggt 780 tctgaacttc atctgcagcg tgggtggtaa ctgaacacag gcaggcgagt ccactcccgg 840 ggtgagccac agggtctgtc aatctgcgtc gaggggccag gcagacatct ctgaatgtag 900 ctgaagactg aggagaggca gagcatggct tggagaagag ggagcctgct agcctgctgg 960 ggctagcatc tggtctcata gatcccactc ctgccgatgt acctcaccca ttttatcaca 1020 tcgtggtcac tgtagttcag ctttggctca aagactttca ggtagcgcac cttcagccca 1080 gagggtgcaa atgggacctc aaagttcatg gagatgggag gccgagccca cttcttcttg 1140 tcgttggtgg gcagcagttc aatctctgcg ctgatctggg attccttcat tccagccata 1200 cgttttatct tccagacaat ggcattctca ctggccttgt actttgcctt ccctttcatg 1260 cagatgactt gcactccact ggtattcagg ggcgttggga tccggacctc tatcttctgg 1320 gccagcaagg aaggtttgaa atttgatttg atcaccacct tcacttccag cttggtccgg 1380 cccacctccc gcaccagtgg gatcacacgg aaggggagga taatgtcctt cgtggttcgg 1440 tatctcatga gctcaaattc tccatctggt ggaatgaagc tgatgctcct ctcagaatca 1500 aacttgctga gcctcacaca ctggtggaaa gtgcagtcat caatggcaat tgactgtttg 1560 ccgcttttcc ccgtttcatc cgcagtccct ttgccctgtt tttcaatgac aatcttgtca 1620 ttcatgccaa acttgcattc tggcattcca ctcagataac tcttcatcac cactctgcca 1680 gagacatggg cactcaaaac ctgaccctgt ggggacatta acaaattcac actctccagc 1740 acatcaagaa agagttcatt gcgacggtat ttgattcctt cacgtctcca tccaatctgt 1800 ccagtcacct ggctggtgat ctgggactgc tcttccttgg tctgactctt gatgccttgt 1860 tgagtgatga aagtcttcag ggcccctgtt tcagagttct gaggatagcc aaagtccagg 1920 atttcatcca gcagctcata gatcagcacg aagttgttct ttatgttctc ctcactgatc 1980 ttcccgaagt aggcagtcat cacgtcacac atcttgtaaa gaaactcgaa taccatggca 2040 gcattgacat tctgcttggt gacagcagcc agccagatgt tggagcgctt gacatggaag 2100 aagctggtgc gggcgatgtt ggtgacgggc gagcgcacct gctgccgcgc gtggatgaca 2160 ttgacgcgga aggcgtccac ggcattgcgc ccgatgtcat cccggtagac gcgagagatt 2220 aaaacctctc ctttgtgatt atagatgaac aagcctccga tcatgatgga actttagtct 2280 tcacttccca tgttgcttaa tacctgccgc cgcagccgcc gctgccaccg ccgctcgccc 2340 // ID JV172790; SV 1; linear; mRNA; TSA; VRT; 895 BP. XX AC JV172790; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15608.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-895 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-895 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; e9c7e355ffba8bf4b29ebb2ba3be8cf0. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..895 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 895 BP; 292 A; 176 C; 142 G; 285 T; 0 other; aatgccagca tttactcctc atgctctaaa ttaagaaatt tgtcagtagt gagctgtaaa 60 gaagcaactc ttacaaggta ttacatctaa aacgtctagt taatggtttt cttattattt 120 ctactaccat aggaactatt gtgcattttc atcagatcat aacacccttg aaaacctgcc 180 aaaggaacag acttcagtag taagcaccat aattaaaaca cgagttatca tctgacaata 240 tagttaataa tgacaaacgg ctaaccctca tttaattatc tttagttttt ttctgaaatt 300 caaagaggct acaaggaaaa taatttatcc caagcagctc atccctttct tcctctcaga 360 tttaaaaaga ctgaaaaaaa aataatgagg ctttctctga actgaacatg cgctctcaaa 420 cattctctag tatccagagc atcttgggta ctttagattt tctctttaac ctccagcagg 480 aggggattct caagagtgac tacttttggc ttttaacaca tttcttagat ttaacaaagt 540 aaaaatcttg ctctgttgct gagtatcaga ctctgtcatc acctgaacaa atgaccttgt 600 gtggtttatt tggtaaaatg tcagaagaca agcgctgcac aattcagctt aaaaaaatta 660 agaatcatta ctagaagagt acagagtcac aaactgtatt tgattttatc atcatcatca 720 tcatcatcta ccttggctgt ctgtcattct actcctatgg ctcaatgaca cacttccttg 780 tataaagcga cacgaggtat ttgtgacaaa aataatggaa ggattttggc tgccattatg 840 cagtctgtat cctaaatgtg atacaagtgc tctaatactt tgtgggttca acaag 895 // ID JV172791; SV 1; linear; mRNA; TSA; VRT; 496 BP. XX AC JV172791; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15609.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-496 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-496 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; 6bd1719f115c8ae85bacf937ae2bb479. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..496 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 496 BP; 101 A; 140 C; 114 G; 141 T; 0 other; gactagactg gttcaaaatt tatttgccat tcatttcttg cacttgaagt actcttcgat 60 gacatctttg gcctgagatt ccttgccata gtctttgaca accacacaac tgcagcccac 120 cactttgcga ggttttcctt ctctgtcgat cttgcagaga cccacccatt cgccgagctt 180 cttgttgtca tcaaccttta ttaagttgat ctgatgctct gcacagagtg cttcaactaa 240 ctttacatat gtgggttcat cacagtttga agccagaaca cagagatggg cttggcgttt 300 gtccaaggct ttggctgctt cacggatacc gcgagcaagg ccatcgtgga taagtgcggt 360 cttcagcact tcttgcagag cggtgttaac atccattaca cctccagcag taatgccttc 420 ctcggccatg gcgctctcgg tgggtgcggt ccccgcctgg gttcctaccg gcactgccgc 480 gcgccgctgc acagag 496 // ID JV172792; SV 1; linear; mRNA; TSA; VRT; 463 BP. XX AC JV172792; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15610.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-463 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-463 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; cb2e20e8bb185b6e7015cde65ffd6244. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..463 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 463 BP; 111 A; 129 C; 92 G; 131 T; 0 other; atgccctttc gtcacggaga gagacactgg aggacgaagc tttgtgcaat gatggccctg 60 cttatcttct acaccttaaa agtacttcat gcaccttcac tgggatccat aacctctaag 120 tgtttatgga gtcataacct tcctctctca ccgaaagatt aacaccacct tccctgctcc 180 acgaacccac ccacccaccc cacacacacc acaaaggaca gagaaggaaa actgccaaat 240 gcacttagtt tgacccccct ggtcccatct cccgtcccca gaggggtgta acctgcgaag 300 ggagatatgc tgcagttttg gtggagttgt ataaaggtgt ctgttattct gtcatcactg 360 cctaaagaaa acagtttgag ttgctcaaga gcagtttggc tttggatttt attttgtttg 420 gtttattcat tttttggggt caccttcccc tcctcctcct ctc 463 // ID JV172793; SV 1; linear; mRNA; TSA; VRT; 1905 BP. XX AC JV172793; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15611.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-1905 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-1905 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; 9121cc1c181d23a5ed6ad1ae34fa5f27. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..1905 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 1905 BP; 647 A; 337 C; 353 G; 568 T; 0 other; ttcaagtaat ccagcctcac atctaattta caaattaaac ctttgtcaaa ctctcaagta 60 aggaaaagta aaccaaaata catacagaaa cagtttagct gactaaaaaa aaaagtaaag 120 gccttgtgca ttaaaaattt ggtcaaacat ttaagttatg cagtctaata ttttggcaaa 180 aaaaaacccc tctacatcta tccttctcag tttgttttct ttcatctgac accagatgta 240 aacataaaca tcaagaaaga aagattgaca gtgtagaagt actttgctgt tgaactactt 300 tttccttttt taaagtacta aggaaaaaca gacaaacaag aatgtaagtg ctaagaatgg 360 actatctttg ggctaaataa aagtcttact ggaaaaaaat gtaaaaataa attaggttgg 420 gtttttcttt tatttcctct acagatatct aaataaatag tctttcaaga aattctagtg 480 ccatatccta aagcactatc ttcctgtata tttttgatca agtctaaggc ttcacacata 540 atcttggcta ttttactagg aagatatcca ttcatattta cattttattt tttgtaaagg 600 gagtgttcag ggttaaaaat atatttattt ttaaaaggtc agcctgccat cctgatggca 660 gtgattcaag ctatagaaca gaagacaagt tacagaacat ccttcagttt cttatactct 720 agacgagagg aaggagatca ggcaagttag agaggtaaac agcctggatt tcaggaatgg 780 agagaaaaag tggctcctta tatgaatgtc tgcatgacca ggactattca ctcctggaaa 840 ctttgtttct cttctgcaca taggtataca cttttattgt tggctaacta aacaattgag 900 aagagagaca gttatggttg ccacagtgaa aaaacattac ctaaggtttc catcaggact 960 gacatgcttt acaaggtggc aaggtgttga atataagcag aggtcatgcc cagatggtac 1020 actccaggtg agagtgtaat tatctcaaaa gaaagagtaa accacttcag taacatcttc 1080 ataaattata actatgtaat ttggagtcat atttagcttt cattttaggc aatgatcaaa 1140 atctgaagga ccttttaatc tttaaggcat tagtgcatca gggactaaaa gctccaggta 1200 attaataaat aggaggttgg gggcagaagg agagaaagga aaaaacccaa aacatctttg 1260 tatcacaagc tatcattgtg catctccttt gttggttagc tccaggaaaa atattttcaa 1320 agacagcaga aggggaatgt tattcactat tctgagaaaa acattagatc ataaatttca 1380 catcattttt taacgcatcc tttaaagggc taaatctatc aggcaagatt ctcatcttta 1440 ctgttccatc agcaccacag gagaatatgt gatttgctgg tcctgtttca atttgcatga 1500 ctcctgtccc aatgtttctg aagagagact gtcgagcatg ctcattgatg aaagtgtgaa 1560 gaagattaaa tgcagacaga ctccatacct ttatgttgcc ttcagcagat cctgtgacaa 1620 aatactcttc tgtaggatca acagcaattg cttgactgga gaatcatgac tctggagtaa 1680 ctgttgctgc tgctttaggc gaagatcaat tacacaggta aagccttttc tgcctccaga 1740 tatcaacagc tggtgttttg gagcatatgc tagcacagtt gctccactat catgacagat 1800 aaaagcatgc accaggctgt ttgcaggaga aaccagagta tcccaaagac aaatatttct 1860 attgtcagaa gaaatcctgc agtagctatc aacgatgatg aactg 1905 // ID JV172794; SV 1; linear; mRNA; TSA; VRT; 1221 BP. XX AC JV172794; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15612.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-1221 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-1221 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; 3008bb3d5b813f04f569c75380950ac3. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..1221 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 1221 BP; 317 A; 280 C; 391 G; 233 T; 0 other; ttgtgatgca acaaagtttt attgagcaag agatgtccct ttacaaagcc agagatcaca 60 gaaggcagaa aattaattcc tgcacaattc tggggaaaaa ccattctcag acaattttgg 120 gggaaatcaa ttcctggaca attttgggga aaatccattc acagataatt tcggggaaag 180 tccaaccaaa gtgctgctcc gagatgtcct cagctggctt ctcctggctg ttgtccgagg 240 atattggtca ttgtgggtga aatccatagg gaatgggatg tcccatgctg gtccaataaa 300 ctgggaatgc tggaacaggg aatgggctgt cctatgctgg tccaataaat caggaatggg 360 ctgtcccaca tcagtccaat aaatcgggaa tgccagaaca gggaatgggc ttttccatgc 420 tggtccaata aattggaaat gctggaacaa ggaatgggct cttccatgct ggtccaataa 480 attgggaatg ctggaacaag gaatgggctg tcccatgttg gtccaataca ttgggaatgg 540 gctgtcccac atcagtgtga taaatcagga atgggctgtc ccacgctggt ccaataaatc 600 aggaatgggg tgtcccacat cactctgata aatcgggaat gccggaacag gcagcgagag 660 caaacaatga ggaggcgccg aacaagaagt aggagaaaga ttgggaatat gaagagggcc 720 acggaaatgc cgacccctca cgctcgtggc cgtggatttg ggcattgctg ggatgccctg 780 gagactccca tgtcctcagc agggcccaca ggagccgcgg aagaggcggc tgaagcggcg 840 tgacgtggat gggccgcagg agccgccggc cagcgccgag atcccgtatc cagagcgggc 900 gccgtatcct gggaaagctg cagagttgta cagactccca aaaccctggg agccaccaaa 960 aaccggggct ccagcagatc ccaccacggc ctgctgcggg aaggagctga ggatggggcc 1020 ggggaaggtg accaccactg ggggaggctg gatgagggcg gtggagtccg gacactgccg 1080 gacgcacggc tcgttgcagc tgttggccac gggctgtggg caggagatgc cgcccgtggt 1140 ggggcagagg tcgtagcagg acatttcctg gctgggggtg gagggtcctg atggagagga 1200 gaaaagcagg agaacgatcc c 1221 // ID JV172795; SV 1; linear; mRNA; TSA; VRT; 620 BP. XX AC JV172795; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15613.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-620 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-620 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; fbf44bf22b1390a8ebca18029efe50d2. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..620 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 620 BP; 120 A; 194 C; 159 G; 147 T; 0 other; tcccttctcc caccctccca ttcctcctga catcaagcct gaacccccag ctctgcagcc 60 actgctgtgc ctgaatccca aaactctgct ggccacccag aaaacttatg gtgatgtggt 120 gatggtctgg gtgtcccctg ctcctcccca cggctggggg tactcttgct caccccaggc 180 tggaccctgg atagagtggg gtgccaaacc cctttgttat gctctgatgg ggaatttcca 240 taaggatcag ctctgcagac ccctgctcta ttcttggcat ctccggtggg gcacagtgct 300 ggtagaagag tgaacttgaa ggcttcacaa ccatcaaaaa ataaatacaa cctcctccat 360 catgtcctgc tgggcccggc ccatcctccg tgtcccagag agatccctgc tccttggcgt 420 cggtcactgc aggttccaaa gggcttgtca caagaaaggt gagtgtctgg gggtctgcca 480 tgggctgcag gggaaaaatc ctcccgctcc ctactgcagc agcttcggca actccacctt 540 cttgagctgt ttgaggttgc tggagcgaat ggctgccagg agctggtctc gagagttctt 600 ctcctggact ggcagcaccc 620 // ID JV172796; SV 1; linear; mRNA; TSA; VRT; 559 BP. XX AC JV172796; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15614.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-559 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-559 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; 1145ffe7062923e3eff99b8aec554fa0. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..559 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 559 BP; 171 A; 133 C; 112 G; 143 T; 0 other; tgaccccata gcagtttcag ccttttgcag ggcaagttat tttctgccca tgtacttgca 60 actactcagg tgggcacaga agagtcagag agaagattcc gtgtccaagt tgaaagctgg 120 agggtgggac agttgctcac tcctgtccct ctgtgtaact ggctggcttt ctgctaataa 180 acagcaagca ctgagcacta aggaaggcca gactggacag ggctgttgtc tatgggaagg 240 tgtccctgcc cactgcagaa gagttgcacc cagatggtct tcagtaaccc ttccaatcca 300 aaccattctg tgaatttcca tccaattcaa acctcagcag ccaaacagca aatcctaata 360 aagcatttcc acaaaacact agccaaaaaa atgcagagca tcagattcac aggaaaatca 420 acaatattat tcttccatag tttcaaaaga tttcctctat ggcaagtgaa ggctacccca 480 cattcaataa ctctgaataa gccatacagt gattgagata aagaaaggtc attattcatg 540 ctttccagat tttgtattt 559 // ID JV172797; SV 1; linear; mRNA; TSA; VRT; 551 BP. XX AC JV172797; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15615.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-551 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-551 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; efcfd55c34bfc407c1b8a7dc95d1b376. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..551 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 551 BP; 164 A; 85 C; 111 G; 191 T; 0 other; gattcattca gtaccttgat agttttcatt ccaagttata gacttacagg gttactgctt 60 ttgaaatgct agtagagcac ctaattctta ccatcctatg taaattttag gtggtatagc 120 taaaagaagc aaaagcattt ataagacttt gatactatta atagttcaag tctgttctga 180 taattttaga atgcaagtca ggagaagggg tgttagtggg tctgaagttt tcttcaggtg 240 agtgagtttc acgtgtggca ataaggagcc tgttggctta aaattagtag ctattttgca 300 ggttttacaa atgagaattt cagcctgcat gaattagtag ggatattaat tattttactt 360 gcttaattgt aattgatata aacatgtatt gtcagaattc acaggcccat actaactgtc 420 cttaatttct ttcctacagc agtactgcta tatgccagtc ctgtctgcat tcttaagggt 480 gcagttcaac acatcctgtg tagattatgg tgaaaaagta ttccaaagga aagtcctatc 540 aaagctagtg t 551 // ID JV172798; SV 1; linear; mRNA; TSA; VRT; 456 BP. XX AC JV172798; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15616.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-456 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-456 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; eb6ae3e0c19884881be978e8083feb73. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..456 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 456 BP; 141 A; 95 C; 94 G; 126 T; 0 other; tgacatgggg gtacatgtcc actgtcaggt ctcctagggg cctggcagca agagcaaaaa 60 aagactgcaa tagaagtttt gaagttgata gccacatgtc agatactttc tgccctttaa 120 agaggctttt tctcttcctt tttgcgtcaa ctgtaacaaa agaagcgaga ataaaatgag 180 caagttgctg tacggaacac gagggcaatc aaaaaccacc acagaggcat cctgagaaat 240 gcaagtacag aggatgaaat atctgccagt ggtggaaact gtctctttaa aatgaactag 300 tgctttccag gcccttttag acttgtctcc tggtgataat cagtcttcca gatggtttct 360 cattgcctaa tggtatacac gagaaagtaa acatttcaga ttattgaaaa atcaagtttc 420 attgcaaaac tactctctct ctctctctca gttaca 456 // ID JV172799; SV 1; linear; mRNA; TSA; VRT; 2544 BP. XX AC JV172799; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15617.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-2544 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-2544 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; f644776b9f7337ab31458ac2148bea16. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..2544 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 2544 BP; 584 A; 576 C; 663 G; 721 T; 0 other; cactgctgac ttggcttgga ttttttgtga tagacaatat attgattgaa acttaaatag 60 ggacgagggt gtttgctgac cttgttctgg tgacagaaat gtcatttcag ggtgagattg 120 tgccttgagc ttctacaggg acctgttgtc ctggggatag gatcaaggga ggcttgtcct 180 tcagtaagga ttgcaatatg ggtagtagtt gtaatttaaa aatgaggttt ttaaaaggaa 240 aaaaaggaaa attgcaatta aaagaaggaa aactcatgca taggttggtt aaatgtgcac 300 aattgtaagt agagacaata atttacagac ttttctcttg aaatattagt gctgctgtaa 360 gaagccaagc atgttactta caacgacaaa tcagactgaa actgagacag attaaattga 420 cattatatat ttcttagctg tgtagccaaa caaatgctat gaattctgtc atttatgatg 480 gaagctagat aaaaattttg taattaagtg agtcacctaa atagcactcc tatatggaga 540 aactgatttc aatgcaagat taatggcctt ttgctgctgg tttacatgcc tgccaaagac 600 caaactatgt tgttgctaag catcattaat ggattaaaat aggggttcca cataattcct 660 acagggtatc ttcaaagcag tgtgtttagt ttggcactag cctagcactt gttagcccta 720 ctaatggatc agggcagctc acacatgtga gggaggttaa tgcaatccca ggaactcttt 780 caaaagctca caggttttct tgtggatgac ttcgcggagc ttgcgcacgc gccggatgct 840 ggaggtgccc acaaagctgt ctggctgtag gatggccatg ccattgtgga catcccccat 900 gatgatgagc tggccatcca ctgtggtcat gttgggacat gggcagctcc agtccatgtt 960 caaaagcgtg atttctagtg gttccttccc caggaatttt aatcccattt tgtcatcctt 1020 gagaatctcc tccactgtca ccagggcgtg tcctgagtct tggtcttcag tcagctccgt 1080 gatgcggccc aggatgacaa agtcactttt gcagaagctg gtcaccagct tctggcgggg 1140 cttgcaggcc ttgcagtgag tgttcttcgg aaaggggcac atctcctcgc aggcctcccg 1200 gctctcaaag ttattctcat tgcctccaca cccgccatag ataaaggact ggcactgctt 1260 tgtcaagctg ttgtaggccc acctaggctc gtaggccttg cagtggcctt gaagggcagg 1320 caggttgcag atgttgatgg ggccgttcat gcacgttagc atgcaactct cataggtctc 1380 aaagtggttg agattgctgt tgcagttccc atagatgaaa gtaaagcagt tgtttttctt 1440 ggcatcatag taccacctgg tctgctcttc cccacagtct tcgctgtccg gctgcttcag 1500 gcactcatcg gttggaaaat gtgttttgtt ctgggaagtt tccttggatg tgggctctcc 1560 tctgatgact gacaaaggga aatctgcccg gaggaggcca ccagtgttct gggcagtgca 1620 ggtgtagatt cctgcatcct gcagctgcgt attgtagatg accagctggg cgatgttggt 1680 gaccacgaca ttccctctga cgtggtttgg cttcatgatg actttgtcct tcccatcgac 1740 ctgcttctcc catgtgattt ctggcttggg tctccctgaa acgtcgcaga ggaagctgac 1800 ggtctctccc acatagacgg actgatggac ggggttgttc accagtgcag gtggcaggat 1860 atcaatgact gttgtctcgg aataggcagt ggtagggcga gctgttgttt ctggggggat 1920 agggctggtg tttggccagg tgagatggta cctacaggtg accacgttga gtgtaatgcc 1980 tttgatgcag gcctctgcat ccatgtagca cttgttgtag taggtgagtc catcagaggc 2040 acaggtaaag cttggttctt tctcacatct gtccttgcac ttgcagacgg gctgcccgtc 2100 ccagatgtcg cactctgagc cttgctggat gcacatgaag cggtcacagg ttgcctcttt 2160 gggcatcccc acaggcccct ttttcccctt gatgtccatg taccgagcag ccacacagct 2220 cttggttcca cagacattgg ggcagcactt ctcaaaggtc tcgcactcca ggtcagcgtc 2280 gcactccctc ttgcaagtgc tctgtgcgtc gacccacagg ttggggttca tgtcattggg 2340 gcatattcca gcgtgggagt agcggattgg aggtagggct ctccctttca gagagacctc 2400 cagaagcagg aggacactgc tcttccctag caagatccac atccaccgag tgagcagcac 2460 caacaacatc tcagaatttc tccagggcag tgtctaagtt ggaagtagct ctttttgtct 2520 cgggttggtt tccgtttttt tttt 2544 // ID JV172800; SV 1; linear; mRNA; TSA; VRT; 1503 BP. XX AC JV172800; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15618.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-1503 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-1503 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; c340cce79fb777829475098d69bfd160. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..1503 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 1503 BP; 420 A; 268 C; 345 G; 470 T; 0 other; tacagatgga ttgatgggtg gagaagtttc aatccgggac atgaacatcc cgatcagaac 60 tccttcactt ttgctcccaa tggacaggtg tttgtatctg aggctctcta tggacctaaa 120 ctcagccacc tgaacaatgt cttggtgttt gctccatctc ctacaagcca gtgcaaccag 180 ccttgggaag gacagcttgg tgagtgtgcc cagtggctga agtggattgg tgatgaggtt 240 ggagactcaa ctggagaaat tataacagcc tctcaggctg gtgacatgat gtttgtgagt 300 ggtgaggcag tatctgctta cacatcagca atgaaactga aaagtgtgta tcgcgttttg 360 ctgctcttaa actctcagac attgttagtg gttgaccata tcgagaagga ggaagactct 420 cctgttaatt cagtcagtgc cttttttcat aatcttgaca ttgattttaa atacataccc 480 tataagttta agaacaagta caatggagct atgatggatg tgtgggatgc ccactacaag 540 atgttttggt ttgatcatcg tgggagtagt cctgttgcta ggatacagga ggctgaacaa 600 gctgctgaat tcaaaaagcg atggactcag tttgtaaatg ttacctttcc aatgaaaaac 660 acgcttacaa ggattgttta ccttttctat ggcccatatg tcaatgtttc taactgtaga 720 ctcatggata atgcaaaatc tggttttcag atttcgctca gtgtcaacaa tactgaaaat 780 accatctctg ttgtgactga gtatcagaat ttaaaggcaa ggtttgatta cttgggattt 840 ggtggttttg ctaaagtagt tcatgggaat aaagtgacca agtttggtct tggtactgaa 900 tctgtgaaaa aagatataaa aaatagtagg gtagtttttc catttggatt caaagtgaac 960 ataattgcag ggttaatttt gggcgtcagt ttggtcatac tggcttttca gtggcggttt 1020 tacatatcct ttggcagaat gttgcgttgg atcctgatcc tggttgttac actgtggctt 1080 attgaattgg tggatgtgtg gagcatgtgt actcagccca tctgtgcaaa gtggagcact 1140 gacgtgacaa ggctagaacg tgataaaggc aataaagcca aacaattaga aggaaaccct 1200 gtcgttttgc cagatgttat cattacttca cttcctactt ctggtgcaga aattttaaaa 1260 cagctatttt tcaacaccag tgacttttta tacatcagga tacctacacc ctatcttgaa 1320 attcctgaga ctgaatttga aattgattcc tttgtagatc catgtgaatg gaaggtttct 1380 gatgtccaga atggtaattt tcgtcttatc caagggtggc tccagtctct agttcaagac 1440 acgaagttgc atttacaaaa cattcattta tatgaagcta gcagaagtaa aattgctcaa 1500 cat 1503 // ID JV172801; SV 1; linear; mRNA; TSA; VRT; 2085 BP. XX AC JV172801; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15619.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-2085 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-2085 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; b9266441b4ee2325f3f2bfc21eee2795. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..2085 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 2085 BP; 743 A; 449 C; 346 G; 547 T; 0 other; tgccaccaca cagaaggtat tttctcaccc tcatacaaat aacattatct actgctggaa 60 aagaggttat caaccatggt agtagtctgc aaagaaacat cacaatcgag tattgattta 120 attcacagag agactggatt tatgctatgt tacttcaaaa cgagtacatt aacttatcaa 180 tatctccatg tatacactta taatgtgcac atacaactct ggatacattt aaataaaacc 240 acaataaaac accacaaaaa ataacaaaaa acacaatccc agaaacctat ccatgttttg 300 ttggccagtt attaagaagt gaaagcactg aattagaggg agactcctac caacttcagg 360 aaatctcagg ttcacctaag aagtttaagg ctcactgttt ttagttccca aaacaacagc 420 agggttttta atcaaataca tatgaagttt ttaaatacag ggaaaaacac tctcttctca 480 cgagtacacg tttgagaaaa tgaaataatg tgaaagacaa tatccctata gatactgtaa 540 atctacaatt tctgatatca acagatgttg cataaaagat gtaacagtac tgattattgg 600 gccattaaaa tcacagttct ttggtcaagc gtcacttttg ggaagttcta agaaaagcaa 660 gcactcggaa acagattaac ttctccaaga aagttttgca tcaaagctct gctttttaac 720 ttttattttt taaacaacaa caacaaaaaa ttgtccactt agcaaagtta agttgttacc 780 ctcttacatt tcagaataca aaactgaaaa aaatccctat taaaaaaaga caggacttca 840 gccaagtatt cagctactta ttgctgtagt tgtaactcaa gtcccttgaa aatccctatg 900 ttttggtcgt ttgtagcgaa aacatgtttg gaacactagc agcaatagaa aaccccttga 960 aaacctagac gtagttacac tgctgagtga aaaccagcag aaaccaaagc cactggaaca 1020 taataaagca tcctgtaaaa gtgaattggt agctagaaaa acggttggtt taaagtgcta 1080 tcccaaagcc atatgtgggc caatgccagt aaagaaaagt ccatttcccc cccacccaga 1140 cagagtccag aaccacagca ctaccaaaaa acataatgaa tgcagtcttc actctgcttc 1200 aatgcctcat ctccccctcc ctcctcctac aggtagaata cagaaacttg aaataactgc 1260 caattccaaa tttaggtgat atgcacaaat atactgttga acaaagtttg gacagcgaac 1320 agtacacctg agttcagtca tacaaactag cttttgtaaa taggattaga cgaatatatc 1380 cacgtctcta atatgaatct agatgtattt tcttacaaaa cgcattaata gaaatatcca 1440 ggcaaataca taccatacaa tagcaaaagc tttaagcccc atttaataag atgactttct 1500 gattaaaaat agaaggcaat taagatttac tcaaaagtac aattaagaaa agctttcaca 1560 gtgcaatatt gaaactgtca caaagttaag aaaatactga tatcaaagta caatcacaat 1620 gttaaagtag acaaaactac tatacaaggg catatcttgt aaaattaaag ggaatgaaca 1680 caacacaggg gacatctctc gtccctgctc tacacatctc ttttcctagt cttcagagtc 1740 ataattgtgt ctttcggaca tcagtagaaa tcttggtaaa actgagaggt tcattcttct 1800 ttgtagacca gatttcaaag cccggttact tcttgaaaac atgttcttca tcactgcaca 1860 atttcaaagt agtgcaatat tgccatgatg tgctgaggca tgaacacata gcctgtgtac 1920 agtgccatcc caacaatgga aactagcatg gaattgaaga cggtgcgctc ccagggctcc 1980 agcatgtaga gcgcggtgac cagcaggtac tggtagtaca gccacgacat ctgcttccac 2040 gccgagccca gcgccatggc gctcccccgc cgccagcggc cccgc 2085 // ID JV172802; SV 1; linear; mRNA; TSA; VRT; 511 BP. XX AC JV172802; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15620.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-511 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-511 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; 151632da7d3b82bcfc97f834460deb9d. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..511 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 511 BP; 139 A; 92 C; 102 G; 178 T; 0 other; ttgttccctt cgaggttttc aaggtttaaa tgtttggcgt ctgctggccc ttttttgtgg 60 ttatctcttt ttgtagtaca cagcagagac ttaatgttaa ttagatcatg gagacagact 120 gatatgatgg ttaagaagaa aaaaaccttt gctattatct aagacatcga gatgtatggt 180 gtaaaaacta gctaactcct ccattctctg atcttggcca aatttcctag tagtattttg 240 gtgcaagtaa ggcttcaggt ctcttgagac acagttcttc tctgcttttg tccagcgtca 300 gctaaacatg gctaaagatc tggggacttt cagggaatat actgccaata ttttatggta 360 tccatacttc agtttgtttc tgagagaaaa atgctccttt aattagagtg gacagtgatt 420 ttcttattca tttgtcctat gaccatttgg aaggctcaaa ctgtcaaacc tttgtagaac 480 aacatgaagc agttcaggca tttcataaat c 511 // ID JV172803; SV 1; linear; mRNA; TSA; VRT; 694 BP. XX AC JV172803; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15621.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-694 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-694 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; 73dc18b92d7b50131db0e0a5e02b5d99. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..694 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 694 BP; 194 A; 192 C; 138 G; 170 T; 0 other; tcttgtatcc agagcaaggg tgggcagttt atgaacagct cagaaacagc ctcagcaaaa 60 ctctggagaa ggtgtcacat ttccggcctc aggcccaact ctgcaaaaaa gccaagggac 120 ttggcacagc tgaagaacat aatccaacac agaaaccaaa cttacttctg accagactca 180 acctcattca tcagcatcat caaactggcc cttctcaact gttctaactc gtggtggaaa 240 cacaaggcaa ggtgtgtggt gacagcttgg gtggtaaaac caatcctcct tccacagata 300 tgagcccaaa agattctttt cctcaaagct tccgccggag agatcgtcag catcataagg 360 accagatgca gcctcctcca attctttatc ccagtcctcc acctcatgct cagatgcatc 420 ttgctgccct gaagacttgg gtacattgga aacttcacca tcccacacat ccaggtcagt 480 atatatattg caccagccct catcagtaga gccactggca tcaccttcat tgggggaggt 540 agaagcagat tcactttctt cagagttgcc atcaggaaca tttggaatat tctgcagtaa 600 acattctttt ctggacttcc agatcatcat atctgtctta ttaggaagct gtttccctca 660 gagtttgcag cctcacgagg cagcagccat cacc 694 // ID JV172804; SV 1; linear; mRNA; TSA; VRT; 1018 BP. XX AC JV172804; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15622.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-1018 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-1018 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; 897dded9bb51995bf9a5dab6b64c6d87. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..1018 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 1018 BP; 387 A; 177 C; 179 G; 275 T; 0 other; gagggatcaa aatattttag ctggttttag cacatatata tgtgtaagta tattcttcag 60 agagggtatt tatcctatcc taaaaccagt gcctgcagtc tggagataca ggagtgcttt 120 cagcatcagt gaaatcctat tgtgctgaat tgtgctgaat agataacagg caagtttaaa 180 ccaaattcta atttagagga tgtcacataa atttctaaga acatgcactt gtaacaatga 240 ggaataaaca ttttggaaat gaacagtcac ctgttttaag aactacctta atgagctcca 300 ctaaagcaaa ccagtcttgt acagcagtaa taggagaaag caatagtgct ctggaacagt 360 taactaagga tcaagctacc atgagaaaaa aagtaaaaca actttttttt aaacgcatgc 420 ctacagagag ccagttccaa aatgtcttgt ttctgtaaag tgccaaactt aaacctaaaa 480 gaaataaaaa aatattaaca atggaagcaa ccaccatcaa cactcttgag tatttatttc 540 aagggcaagc aaggctaaga gaacatgata gcagatatag gaatgaaatt ttgtaacaga 600 acccaaagct tctcaatgac ctcctgcatg acagtgggct gtcatttaat gtaaaagtat 660 acatacagaa caggactaca cctatgtcct cggacttcat aaagtcagtc ctcagaaaga 720 tgcaatgcat gccagaattc agtttaagac tacaatagct attcatgcta ttagagtctg 780 gatttcgatc tattatagct cattacaaat gaaagaatgt gaatgtaaaa aaatcctgat 840 gttgataatg gggctctaac aaattcttca catgaaatat agattgaata tagattaaaa 900 cctttagaaa aaaagtctca gacaagtatt caaacggata aaaattttac actttgaact 960 atatagcagt gcaaagtaaa aatcccactc ttcccataaa gaaggtggca aagcacac 1018 // ID JV172805; SV 1; linear; mRNA; TSA; VRT; 1030 BP. XX AC JV172805; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15623.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-1030 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-1030 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; ec9f51505f59dd79c5f133ab8b6ff94f. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..1030 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 1030 BP; 302 A; 192 C; 201 G; 335 T; 0 other; caatgaggca ggagtgcagg cttgaagtga aattcttcag tgtttttcat tcattttctg 60 atgtgaccct ttttcaaagg gggaaaaaag tcctggttta tgttgagttc ctacttccca 120 tactgccttg ctgaaagcca cgttccgata ccttcatact tttacacttt attttatatg 180 actagatgtt aaataaatat ttcaaaacta ggtctttaat acacatctaa tttgaaatta 240 ttattgtctt gcatagaagc tttttcttct tctggaggaa gagagagaat ggaaaatgta 300 cagtactgca gcatcatctc tccctaggaa gcacagtgta agacattgag gataacttag 360 gccctgggac catctcagaa gtttatccca gcaactgcat cctgcagaga agcacttttt 420 gtaaagctta ggccatagca aaggtaggct tgtgctctcc tggcacaatt gctatgagct 480 tcccttacag ctccttcctt tggattgctt cttcttcaga aatacaagta gtgcagtttt 540 tgtaacaccg ttgtttaaaa gctatttaca gcccaactgg aatttaacct aaagttccct 600 agttcccttt ttaaaattca tgtttatatt aagaattcca aggaataatt ccttccactg 660 ggataaaggg agaaccattt tgacacttat ttgatgtttt tgctgagaag cagagcagag 720 accttgcatg gttttgacct tttgtaaatc ctgtgcaata aagggtaggt tttgtgaata 780 aaagtaatga aaactctgcc ctgggtctat attcagattc caaatttgac acagaaatga 840 ggtatcaaat aaaacaccca agaggcttgt gctgcactga tgaataaaat accacagaaa 900 caagatctgt ttgctagaag tgtttggtta ggaaacactt tgttggtact acttattttt 960 ataaaaacaa gcattttcaa gtggagtaca agcccttgac tttcctgtgg gggtagactt 1020 ctctggtgat 1030 // ID JV172806; SV 1; linear; mRNA; TSA; VRT; 609 BP. XX AC JV172806; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15624.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-609 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-609 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; 4abb25f2ba23244704e738100583fb22. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..609 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 609 BP; 172 A; 132 C; 162 G; 143 T; 0 other; aggctagcaa tttaataagc atggaatact gcgtgaggaa ggtttcttaa ctccaaataa 60 atagaccctg aggccattag cctgtggctg cctttatcca aaaatgttgt gggtctggat 120 ctggacacag caaaatacat cctggccaac attggagacc acttctgcca gctggtgata 180 tctgaaaagg aagtcatgtc aacgattgaa cctcacagac aggtggcctg gaagcgcgcg 240 gtgcgcggcg tgcgcgagat gtgcgacgtg tgcgacacca ccatcttcaa cctgcactgg 300 gtctgctcca agtgtggctt cggggtgtgt gtggattgct acaggatgag gaaaaaagct 360 cacatgaaga tgatgactct gatactttct cctggtttaa atgtgtgaag gggcaggcac 420 atgaaccaga gaatctaatg cctacacaaa taattcctgg aaaagctctc tacgatgttg 480 gtgacattgt tcactctgtg agaacaaagt ggggaataaa ggcaaattgt ccttgtgcaa 540 ataagcagtt caaagcacta tccaagccag ctctgaagga ggattccaag cagcacttgg 600 cacctgggg 609 // ID JV172807; SV 1; linear; mRNA; TSA; VRT; 521 BP. XX AC JV172807; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15625.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-521 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-521 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; 01c4d090402a2050172b8eccadfb8015. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..521 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 521 BP; 156 A; 90 C; 102 G; 173 T; 0 other; tcacttcgct tctttgcatt tacaggaagt tgtctggtat gattgtgttt ccctccgcag 60 agaaaatgtg aaaatcagat gcacccattt aatgaatgga caggacagaa cagagctctg 120 caggaatgcc cttcactgct ggttacagca aaggaattga aatgcagtgt gctggcttgt 180 aagcgctaga gaacacggta attagatgag cacatgcaat gttttatttt gcagcactac 240 tttgtgacaa ggaattctct ccaaatacgt ggcaatacta aatgtgtaat agatactact 300 tctatggtag catattcaaa acacaatgag agatctgcca gttcagttac tggcacactc 360 aagaattttt acagggttta ttactcagtg cctttttttt cctgaataga aaacttgtta 420 caaaaaattg aaagtattct ccttatttct agattgtttt accatgagat taggttattc 480 tgtggggacg aaaaacttac tttttattta ttttatttat g 521 // ID JV172808; SV 1; linear; mRNA; TSA; VRT; 1285 BP. XX AC JV172808; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15626.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-1285 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-1285 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; 5dd7465865da8d16a6404d6bb1a9c7e4. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..1285 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 1285 BP; 423 A; 244 C; 210 G; 407 T; 1 other; tcatcccact gacttctaaa agaggcccaa acacacctcc gtactgtaca ttctaaaatc 60 tgtattgcct ataagcttca gcctatgcag ctttttttcc taggaaacac ataattgttg 120 cgtgcaactt acgatgggca gtcgtatgtc tacggatggg aaagaataaa gctagtgcaa 180 tttgttttag aaacatgtaa agctatgaat ggaatgagca tgatcttgct tcttggatta 240 ttttacccac tgcactgtac atatctgcag ctatatcctt ccttaactga tgccaagcac 300 acacttttat tataaaagat cagtaattct acacagagag tggttctcat gctctaattt 360 taattttttt tctttttctt aaggtatagt acaacttaca gtgcttataa aaaggcaaca 420 ccatatggta ccatgtcttc actatcacat tgtaagggaa attgctattt ttcttttctt 480 aaaagcactt aaaataggca aaagttctaa aagggagtgc taaatgataa tgcatacttt 540 attagaaaga agtctagcct tcctttaaag tgccgtttgg ggaatgaaat cctgtaaacc 600 agagccactt tgtttaaaac ccaatgaaca ggaactgcta cagaatagaa agtttacaca 660 attccttaaa gcagtttaaa gtccactaca tgcaattggt ttgctataaa gctctctaaa 720 acttagtcgc tttactctga aattgagtcc ccagtcccat atttaaatgg aaataaacat 780 ttacagggtg catttacata cactataata caagaatgac atccctttgc cagaagataa 840 aattgtacaa ttccttgccg taactcagtt ctgacttgat aaatttctta cactcgtaaa 900 ttatataata tgcatcagct aaaatatttt tttttcataa atagttacaa aacttgccaa 960 aacacatggg gggaagtttc ttttgttcaa aaatctgaca tctgaatgtc acacaacaca 1020 agaaacaatc ttaaagacac gttaagtgtt ttctgaagaa agtgggtgag taaactacta 1080 gctgaggaca aaaagactac ccttccccaa gaacacagtg cacaaaaagc aaaatgtcaa 1140 acagtacctc aagcaaaata aaggtctgag gattgaagcc agctcacgtg tgatcctgct 1200 aaagattttg tgacagtcac catttaggtc caacgcattg gaaagtggtt gctggctttt 1260 tttttttttt tttntttttt ttttt 1285 // ID JV172809; SV 1; linear; mRNA; TSA; VRT; 523 BP. XX AC JV172809; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15627.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-523 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-523 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; 2597b327200beb665a75cb4f5e11a772. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..523 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 523 BP; 180 A; 101 C; 82 G; 160 T; 0 other; tttttaacca aggcattaag agactctttg actgtcacat tactcatcaa agtaccaggg 60 ctcagcatct ttgcaattag gtctcagaat tattttgaat aaaacttcac ttcaacaatt 120 taaacaattc tgtcccgaat ataaacaaaa atatacttga aatacttatc aacaactaca 180 tttcctaatg aacaattaat taaagctgca aaacagtttg aaataagatg ttaaaagaaa 240 gagatcaggg gagacagggt gaatttctat aattcctttt aagaaacaaa tttccacccc 300 cttgcccccc tacattccca gccagtgtaa gtagacagaa ttacactggt ttagatcagc 360 ttaagttctg acctatatac tccagtggag ttaatcctaa tttccaccac tgaaagtggg 420 atcaaattca ctttgtcttt aataaagcag tggatgataa gcaagtctct tctctgtcgg 480 attctgcttg agaaaggaaa ttctttgtgg tgctaaataa tgt 523 // ID JV172810; SV 1; linear; mRNA; TSA; VRT; 1372 BP. XX AC JV172810; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15628.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-1372 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-1372 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; 07da67350ba517891e08d2d281003f23. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..1372 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 1372 BP; 382 A; 308 C; 325 G; 357 T; 0 other; aatgggcact gggtttgtga ctaattaaaa aagaatgtaa ttgaagtgct gtgtaagaca 60 tagatggaga tttctcagtc aaatgaaaac agtgacattt ctgaggtaca catacaaaaa 120 ttcagatgca caggtttctt tctttgagag gatattaaag gtctctaagg caaaattatt 180 ttcacttgaa gcagcactgt cacattttaa ttgcaatgtg gatattcctt aaaactatca 240 ggaattcact ttgaggtccc acttgttaag ataaattcag aagaggatga gatgaagtct 300 gactttaaca tgagaactag aagaccattt cttgaattca tctaaacaat tgaaaatctt 360 gtttgaattc ttatggcaca actcagaact gtaggcctac tcggccaaga aacaaaaaac 420 acaaaagaat tcaccaaaac cccagactga aggatacaaa ccagagcttt acaaataatg 480 aattgtggct gaaggcagct taaggctttg ttaaagtttc tacaccaagt tctgctgctc 540 tttgtgtaat ctcttctctg ccagagttca gagggattgc acagacacaa cacagagcag 600 aactggctcc ttctgagcag gacacagtcc cgttatcttg tgtgtgattc caggcagggg 660 aacaagctta gcccttcctg ccaggaccat ttcatcctcc accccctccc ttcagtacaa 720 ttagagatga cttacaaaaa attaaaccac gcacactaat aaaaaaatta gcgtggggtg 780 caaagtctca atatttgcaa ttttcctgcc aggtgtgaca gaatcccagt ggcccagccc 840 tgcagagctg cctcagtccg tggtggatct cctgtaccag aacctggccc ggtagtcgtc 900 gctggcgttg tagttgacgg agcagatggc gtccgtgtgc tggtcctggg ggttgcagga 960 cacgaagcac tggaaggtgt tgatgtcgta cagacgaagg gttgggtgct gggtccccac 1020 caggatgaaa tccccagaag ggtggaaaga aatggagcgt aacatctctg cttcctggat 1080 gtacttgaag gctcttttgg cagaaggttt tgaataatca aacaatttaa gtgtgtagtc 1140 ccttgagcca gaagccagga tctgttctgt tgggtggaaa gccagacacg tcacctcatc 1200 cacgtgatcg tacagagtcc ggatcaccgg gtggttctcc atgttctgct gggctgtctc 1260 attcatcatc acctcgatgg gcatggcgct cttggccagc atcctctcgg tgtccaggat 1320 tttgatggag gcatcggccg acgcccgtgg ctatcagctc gcccactccc tg 1372 // ID JV172811; SV 1; linear; mRNA; TSA; VRT; 452 BP. XX AC JV172811; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15629.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-452 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-452 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; 6df4e0377c638b43cd4ac57a77d8e0f0. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..452 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 452 BP; 124 A; 117 C; 106 G; 105 T; 0 other; agctcacggt tctagtaggg aaggatccaa aggagaccga agacaggaga gcctcagcag 60 atgaggacag ggacaggtgc caacaaaacc acctcagaag atattctaag tgctgaggtt 120 aaagcagcag gtggtgtcaa cctgatcctc ttgcagggag gctgcagaaa caagcaccta 180 ccacttggct accaacggtg ttgcagtacc ctgctctgtc catttaatgg atttccttgt 240 ccctgaaacc gcaaccagcc caagtcagaa aatgggaggc taaggagaag gatatattgt 300 tatttattct tgcttcagtt ttagtaaggg cttcctgatt gccttcagaa gcagtgtcat 360 ttcaggtcct gacacaagac tcacatccca tgtcagatcc ttcctcgctt cctggagctc 420 aatccaccag cccactcccc aagctgtatc at 452 // ID JV172812; SV 1; linear; mRNA; TSA; VRT; 1110 BP. XX AC JV172812; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15630.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-1110 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-1110 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; 037e90cb0e34b0c3439709832117f004. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..1110 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 1110 BP; 368 A; 248 C; 234 G; 260 T; 0 other; gaaactaaaa accaagggaa gagccatgga cacaaggaaa ttcatgtgaa cctacacagc 60 ttactaatga aggagcagcc ctaaactaca attaagagtc tgctgcaggc acaagagggc 120 agactgatgc acattatgga tcttgccaac aacaggggtc tcaatctgct acttaacttt 180 ctgctcattg tcttggtcct agtgcttgca tttatccttg tgaagctgat gtgaacctct 240 gcaaggctct gcttccttct cagatttcgc cctgtgggtt tcgcaatgat aatgtagaca 300 ctttagatga cctgaatata agtatgtgaa gtctgcagag actgaagtat ctgagagtta 360 caaagaatgt gttcacaccc caaatttatc agaaagcaat cctaagagct gtgcacaagc 420 tgtgcacctg ccactgagtg aagaaagcac ctacagcctc accgagaacc cgaagaaacc 480 caggaaatgc atcggcagct acagtagctt ctcattgcta cagctgattg ttatttaaag 540 atctacaaat tatttgcagc attcaaggaa cataatttct gcaaaaaggg gacagcagaa 600 atcaaatttt taaaatggga tttctgtaga acatatactt aatgggaaat gacagcaaga 660 aggcaaacca aaatgccagc tttgagttga cagtacacat caaattacct gtggagagaa 720 aagcacagat gctgtaaatg gaaagcaaag atatccctga aaagcagctt gcagtagcag 780 agatggggat aaatgaaggt caaatatgaa aactagacct ttttttgacc acctgtggtt 840 cactgcaaca cctcaaaagc cagaagcctt ctgttaacca gcatatcaaa agaagcacct 900 gtcaaaacaa ctgaaaaaca aagggccatt acccagggtt atcataactc tggccaggag 960 acccttagca ccagcacata cacagagagg atttaccact tatgcacagg tcaagtgagc 1020 agtgtgggag ccctgcagcc gtatttaaca gagcacttgt tacttgccag tgccatcatc 1080 agtccatagc ctgtcctcac ctctaggcac 1110 // ID JV172813; SV 1; linear; mRNA; TSA; VRT; 1539 BP. XX AC JV172813; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15631.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-1539 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-1539 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; f696f7fcea3bf45fffd69ff6c757df2d. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..1539 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 1539 BP; 342 A; 431 C; 313 G; 453 T; 0 other; caattcaaat aaatgtttta ttgggaagtg aaaagttaca ctgactgaaa cccacaaccc 60 accagctttt aacctgttca tgaatgcaaa ctagctgtgt ggttttacac aaggatctca 120 ccaacacaga gagtctgtat agttcccaaa gagatcaatg acttaaagat acaatccctc 180 aggggttccc tcttgctttt tatagagaac attctcctta gactttttga aatcttcatt 240 cgttactttc attctccgct ccctcaaagc catcaatcca gcttctgtac aaattgcctt 300 aatatctgca ccactgagat catcttttgc cataatcaac tcatccaaag tcacatcatc 360 tgccaaggtc atcctgctcg tgtgaatctg aaagattcgt ttcttcgtct tttcatcagg 420 cagagggaac tctattttcc tgtcaatccg tcctggtcta attaaagctg ggtccagtgt 480 ttctattctg ttggtggcca tgataacttt aacatccccc cgagagtcaa acccatccag 540 ctggttcagc agctccaaca tcgtgcgctg gatctctctc tcaccccctg aattggagtc 600 atacctcttg gtgccgatgg catcgatctc gtcgatgaag acgatggagg gcgcgtgctc 660 ctcggccacg cggaacagct cccgcaccag cttggggccg tcccccaggt acttctggat 720 cagctccgag cccaccactc tcaggaacgt tgctgatgtt tggtttgcca ccgctttggc 780 cagtaaagtt ttgcctgtgc caggtgggcc atacagaatg actcctttgg gtggctttat 840 tcccatctct tcataatatt cagggtgggt gagaggaagc tccacagact ccttgatttc 900 ttgaatttgg ttgtcaaggc caccaatgtc agcgtaggtt tcttgaggag ctttctctac 960 tttcatcaca gtcactagag ggtctgtgtc atccatcagg actcctatca cagcatgaac 1020 cttatgattt agcaaaacag agcagcctgg ctctagcagg tccttgtcca caaaagacag 1080 aatactgaca tagtgctctg atcccacaga cgtggacacg atggcgtggt tgtcatcaat 1140 gatctcctcc aaggtaccca cggacatcgg tgttcctctc aggtcatcca ccttggacct 1200 ttcctcctct tgtttttctt ccaaaggttt catctgttct tgatttctga taaactcttc 1260 ctccattaag aggtaatctt taattctctc caatttcaac aacttgagtc tgcactgtgt 1320 gtggggagtc accagaggga gtttgctggc agcatctggt cccttggtct tctttttctt 1380 ttccccactc tggttggaac tggaggttca tatttcttct tcttgtcctt gtcatccttc 1440 ttgctcccac caggcccgtg tccaccactc tgactttgac ccatcgcgcc gcgaccgccg 1500 gcaccgacac cgcccgcacc gcacgggccg cgtcactac 1539 // ID JV172814; SV 1; linear; mRNA; TSA; VRT; 2208 BP. XX AC JV172814; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15632.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-2208 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-2208 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; 6dc3f5568a5c45988091fa9f9183d8fb. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..2208 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 2208 BP; 520 A; 579 C; 592 G; 517 T; 0 other; attcattctt ttaagttgtg caaacctgac ttgcaggtgg gccctgccat acagggaagt 60 aagagggaaa acactccttt cccctccttg tgaaggaagg gaggctgtag gaagaagtac 120 agtcacccta ttaggataaa ggtaaaggat cacaagggtc tccaccagac tagagactct 180 cttcagagca ggtttaactt cactatgtcc taaagaaaaa ggagaggttg tggctgagca 240 gccagagtct ctgcaagaga accaagcact ggaaactccc acccagacag cagctcccag 300 ccgagggcac tgcacctgtg agcaaccagc tgtggcatta cagtgcccac ctgcccacgc 360 tgctcaggtg tgggcacaca cagcctggct ccagcagctg aaggaaaaga tgaaggccag 420 ttttcccctg tggaggtagc actcagcaca agtttgctca gcagagggag ccaggcctgc 480 aggacttgtc tcctgacaag gctactgcca ggtcatctgc ctaatgtaac atactttgct 540 ccaaggcagg cagcctcctg tgcagcactt gactccatta ggctgcttgc acagataggg 600 gacctgcttg gagagggaaa gacagactga tcctcaggcc tgccagtcta tgagctcact 660 gccctgaggc acacctttgt ttgctcctct attcaatggc tacaaagaca ggttgattgg 720 aacccatccc cttccttctt ttgtagccaa atgcttcggc atctcttcga aagcacttcc 780 caaggtactg accttgttat tccagaatgc cacacacttc caacacaata cagcatgtcc 840 aaagtcgcat ctcacactga actgccctag aatttaagga catttaacac ctttctaggg 900 caccagagga tctgtgcagg gaacctcata gctctctaca cctttcctcc tggatggggt 960 ttcagaagtc aaaagttttg cattccaagt tgtttcactc caacaagatc ccagagcctt 1020 cacattttag tcctagatta gtcatgtgat acagtttaat aagtccatct ctctcctcaa 1080 gccaacggca gggcaaaagg ttagtcctct gaccccatga gataaagcaa gtaagtagga 1140 aagtgctgtt gtcctgcctt gtgttgccac tggatcaatg tttaatgagg gcaggtgctc 1200 agctgcccag cactatatct attgcagaga aacagagatc tagagatatg ctaacttgag 1260 gggtattaac agccaagttg tcttcaggga gagagaatgt gggaggctgg ctgcaatttc 1320 cttctgctag ttgttcttct tatcctcagg aggtgcataa ggaggtggct gatccatggg 1380 catgtacacg ttgtgtgggt tggcagggtt gtaatatgca ctggaagctg cttccatggc 1440 cttactgcct cctggcattc ctgggctcac ccaggctggg ggagctgagg ggcctgagga 1500 ttctgcagga ggtgccccag agtagggtgg tggaggtggc atgtacacgg ggttcatgtt 1560 tggaagtggt gggtaaatac ctggggcctg ggcgtagggg tagcccatgg gctgtggagc 1620 cggtccgtag gcgctccctg gaggcggcgc ataggggtag gctccgttcg ggggcggagg 1680 ggccgcgtag cccccgggaa caggggcgta tcctccggga acaggggcgt atccatagcc 1740 agggctctgc agaggaaccc cactggaagc acaagaagca gctttcatca tcagctgtcc 1800 aaactcaacg gctcctccac tgttgaaagt cagcttaaat gtcccctgcc cttcccagcc 1860 acctccagcc tcggcctgga tctgcccctt gatgtaattg gcagagaaaa cgggctgctc 1920 gatggagcat cctttcacca aatagaacgg catcatgaag gacagcatgg gatccttgcc 1980 cttggtcaca aagatcatcc tgtagggggt gagatacagc attccttttt tggtgccttt 2040 gaagatttca ggtttgcctg tcacgtcact gaaggagagc tccacatctt tgcactgttt 2100 gaggacactc tcggcattcg ggatgacgac accgccctgc tgcgagtggt tcatgttcac 2160 cgccatcttt gccccgccgg tcccacccct gacccggtga cggcagtc 2208 // ID JV172815; SV 1; linear; mRNA; TSA; VRT; 961 BP. XX AC JV172815; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15633.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-961 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-961 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; 8d5c68434bed195f66f4c96e41ffef0a. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..961 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 961 BP; 327 A; 136 C; 193 G; 305 T; 0 other; gcatcaacct tgcagtattt tattggaaca atatgtaacc acaaacaaaa ccagttattt 60 ctatttttta taggtgtact tactgagatg gttttgtggt ccaaacacag agtaattgtc 120 acagattggg gaatttagaa ctgaacttag aggactgcaa tttgaagtac caaaatacta 180 tgcttagaca tcattgctgt ttaaaaagta cttccagcta atcattctgt tcaagtgctt 240 cttcactggt gatagtgttt aagaagggat ggcaaaatta gaacagtttt gaaagatgac 300 ctacaagcag atataaatct ggcccttgaa atttttacaa tttaagaagg caaaaatgta 360 gtcctaatgg tagcctatca tttatagatg ctttgtactg aagtatgcat acttgctgta 420 tagatggaat tcatttaact gaaggaagaa aagctctaaa caagggcaag aaaaaatttt 480 cctaccatta ccacttactg attcttcagg ctggaggaag agaaggataa cagttttaat 540 acaacaaata cagtcatgct ctaggcaaga tcattgtttg taaatatttt attgtatttt 600 gacagtgatg atgttggtga gagatacatt ggaactgaag ttaggaaaat gggaataaac 660 agtagttaat atagtgacag ttgcatctta aagcattcat gtggtagtag tttaaagttc 720 tgtaaagcat attaatattc tgtggacatt gtatgtgaca tactacagaa gagcaggtgt 780 caattcatct ttttactggt aaaggcacaa aagagtggag atgatagcca acttttgttc 840 cattcccatc ttagtcacca attttgataa agtagccaaa ataagagaat aagaggcctg 900 tttcaagaga aggtctttta atatgtcgtg gggagctttt taaagcaaat gtatttgatt 960 c 961 // ID JV172816; SV 1; linear; mRNA; TSA; VRT; 709 BP. XX AC JV172816; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15634.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-709 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-709 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; 0d5ab85e3adfee1e4d1b30fc369325fe. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..709 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 709 BP; 184 A; 171 C; 163 G; 191 T; 0 other; tgagtggaca aagtggagca acaaatcaaa ccacgtgcga ctgtgtagac ccaagagata 60 tcagcatgaa taacatcacg agactaccag aagatgcctt caagaacttt ccctacttgg 120 aagagctgcg actggctggc aatgacctta cttttatcca tccaaaggcc ttgtctgggt 180 tgaaagaact caaagttcta actctccaga acaatcagct gaagacggta cctaacgagg 240 ccatcagagg attgagtggc ttgcagtcct tgcgtttaga tgccaaccac atcactgcca 300 tcccagagga cagctttgag gggctgctgc agctgaggca cctctggctg gatgacaaca 360 gcttgacaga ggttcccatc tctccactca gcaatctccc ttccctgcaa gccttgactc 420 tggctctcaa caggataact cacattcctg actatgcatt caccaacctt tccagtctgg 480 ttgttctgtg agtgtttgtg tttcacaggg cacttggctt ttctctgcag tgacaggttt 540 agttcatcca gggtggcact gaaaatggat tttttgctgt gttttagctc agttggccac 600 tggcaacctg aggtgatacc actgtatggt agaaaacctg cttaaggttt gctaaagact 660 ttctcttaaa caaaaagcca cattggttgt gggtaatgag atttgattt 709 // ID JV172817; SV 1; linear; mRNA; TSA; VRT; 490 BP. XX AC JV172817; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15635.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-490 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-490 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; b5a3ed5a6481c6eaa13dd064189cd156. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..490 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 490 BP; 141 A; 114 C; 90 G; 145 T; 0 other; ctctctctgg agctaagtgg gaagaaggaa atatttttca gcccctccca cctcctcctc 60 ctcctcacag tgatacgtat ctaccaccta gagagctcta actaactatt aaggtctgat 120 taagatgctt tataaaacat aataagccat gagataggat aagcacgtat gaaatacctc 180 atgtgcaact ggcaatcagg gctgaggtat tcataactgt ctgtgagatt tcaacacctt 240 tctgtaaaac caatactctg catgtctcaa gtcatacttc ttcccagaaa tccattttct 300 tgctctggat acaacaggct tgggcatcat tcattttcgc ccaacattta agaattgctc 360 aaatagcttg ggatgtgcaa gagggtttag agtttaacta caccactgct gcattcacac 420 agcaatcttg tacctggtgt cggagttttg aaactagttt tgcatttggg tcactccatc 480 aaaagatgac 490 // ID JV172818; SV 1; linear; mRNA; TSA; VRT; 2283 BP. XX AC JV172818; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15636.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-2283 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-2283 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; 1fe956eacf29bd16f298b7e80a90dcc3. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..2283 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 2283 BP; 520 A; 505 C; 432 G; 826 T; 0 other; tgatgatagg taggtgcctg aaggtaaaca ctaggttata ttcatgaagg acacaaagac 60 tgctttttct tcttcttctt ctcctcgaca aatagtggca aaagaatgcg gcactatttg 120 ttcaactgac ttgtttttca cagttaaatg tcaacaagag tacaaatacg aacactgaca 180 gatattgctt gagatcaatt ttcaacaaac tctgttcttt ttttaaatca atcgatccaa 240 taaacaatgg ggtactgtca gtttaaagcc gcagataaaa gctatacaag cactttataa 300 gtcagaaaca ttaaaaaaag aactatttac agttttcttc tttagttcat atgtctacaa 360 agccagcgca cattacactt cacaaaaatc cacagttaat gatatcaaca tgtgtgtggc 420 taaagcttgt gacctaggga ctgaaaatgc aggggcagta aaacaggttt tgtcttctct 480 tcagcaaccc catttgtgca ctaacagctt cattcagtct caagctttat attaaaagca 540 ttcttcaaag ctttcacctg gaaggctggt aactacatgc tcactcatcg tctttccctt 600 ttggaagttc tgcgacggac attgattgtg gaaacttcct cttcttccat tacttcttcc 660 tggggaatat catcactgac aggtgaactg ctctgaaaca catccatctc ttcactggat 720 tcattctctt tactggctgc ttgtttggaa cgccctgcac ggactttttt ttgctgtgct 780 ggtggtgttt gtgatgacct tcctcgtctt ttctgtggcg tagactgtgc tgattcaact 840 gtactagttt cagatggttc tgctctctgc tgtgttcttt ttgatgtcct gttttgcctg 900 ccttttggtt tttgttcaat attttcagtt tgcctttctt cctcctcctc ctcctcttcc 960 actgcagctg ctggcggttg ttttttttgc tcctttttga tgactttgcc actggttctt 1020 cctttggtgc tgtcccatta tttgttctgg tagggcgtcc tctcctccct ttctttggtg 1080 gactgttctg ttcatcctca ctttctatca catcttcttt tagccttttt tcctcttgcc 1140 attgtgtttc atcggcttct gatacaactg caggtctctt ccttccccgt tgactacctc 1200 taagcttctg ctcttgaccc actttattca ggtcatctat gcttagcttt tcttctgaat 1260 ctgtgatagt ggctttcttc cttcctctag gcttctccat ctctgacctt acaagatcag 1320 agtcgtccct tttgtcagtt ttctttcctg gtaagggtga agccagtgtg aattcttcat 1380 tttcactgtg gtccatttca gtactgtcaa gcctcccttt gatccttccc ggagagcttg 1440 gatttgaact gctgctggca ttgcttacag tttccattcg tgaagatttg gattgagact 1500 gcttgcctgc tgacgaaaga ggcttattaa ctgctccaag aacattggct gctttgggct 1560 ttccaggggt gaagaaagac ttcatttccg gaggaagata atttttggtg ttactgaaat 1620 tcttgtcagg ttgagtaaaa tatctggctg gaagtacagg gtctttaggg gattccaaac 1680 tgtatgttgt actctttgac ataatgatat tcattgctac atcacagact gtatatagtt 1740 tttcattcat tttttgatca tctggtcctt gagcatcctt agtctgtttg atattttcta 1800 ccatttttct gataaaggca tgactgttgt tttcattttt agccattaat atttccagta 1860 tgaaccacag gcactcttta atgtccttga gttgctcaat gtcctggact ttgacataat 1920 ctgggtcgtg agctagaaga tggatagtat aaggaacaac atactctggt agaagtgaca 1980 acagtttctc actaactgct gcatgttgct tcagatattc ccttctgaca tttatgttct 2040 tcacaaggca ctgcctagca tgagctcttc tctctttcac aggatctttt gcacacagtg 2100 cacaaatagc catatattct agtggcagcc gtagtctaga aaggcctttg tgaagcttct 2160 gagcaaatat ttgtctcact tggtaacatt catcatttat ggctagtgca cacagctggt 2220 attgttctaa ggtgatgatt tcatggtaac aaggttcttg tgccaacttc acaatagcat 2280 tcc 2283 // ID JV172819; SV 1; linear; mRNA; TSA; VRT; 660 BP. XX AC JV172819; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15637.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-660 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-660 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; 1ffab0ad3bc5e60cf42865657942e5bb. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..660 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 660 BP; 184 A; 126 C; 188 G; 162 T; 0 other; ataccagagg agagatgtct gacaaaatga agattgcttt ccagcctgta gttggtagta 60 agagcactaa gtgtttactg ttaccacagt tagcagagag gataggaaaa ggaacaattg 120 caaaaccaga ctgctctttc actggtgtgt gagcagcacc tctctgcagt tgctgggagt 180 aaaagtgtta gcctgtagca catggcagta catgagggaa ggtcactgta aaaggcttta 240 atcctcatta aaggggcaca tttggatgta gctgaacagc tggaaaggca tcacaggtct 300 ctttctggag tggaacagtt tctttaaatg ccaggtgtaa ggtcaggcat ggccagcact 360 gcccatgaca cacagtgacc tcgtacagag cccttctggc agagctgctg gaagcacaga 420 gtggctcctg gatgggcact ggatgggctg ctgctgctaa acccacacct tgccctgtgt 480 gtagacaaac tgagggctgg gagtgtgtga gatcacatag agttatagtt tagggatgtt 540 tgatccaggg catgataata gttggatcca ctggatttga agtgaacatg tggggaagca 600 cttacaaagt tggattttac aggctccttg tgacttcatg gacatgaaaa gcaaagggag 660 // ID JV172820; SV 1; linear; mRNA; TSA; VRT; 1069 BP. XX AC JV172820; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15638.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-1069 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-1069 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; 965ee153a7f626d5285376cda7594bc0. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..1069 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 1069 BP; 345 A; 203 C; 173 G; 348 T; 0 other; tcaataaaat tacataataa atttttaaaa ggatatgaag ccttatgtca cttataacaa 60 ccaaacaaat attgttactt ataacaacca aataattaag ggtccaggta aaattttttc 120 ctagcatttg tttattattc aataaaaatc atcactttgt cttaactaaa gcaaatgaag 180 accactcctg cagcacagct ctgatgcagt gtaactccta cagatgctgg cttcagaaaa 240 acagtactta gcatattatt tgtttaaaca aatcaaacac atttgaatga gaaactagca 300 gtgtttaaga caagaaacct cagcagtgtt taaaaaactt ggtgctaatg actaggattg 360 tttaagaaac actaatcttt ggatgaaact attaagctct gttttgttac cattagtgag 420 taggaaatac atgtttatac aggagggtca tgcttcaata gtttaatctt ttacttaggt 480 taatttttat tcaacatggt aatggcttag tgcaattact tttcaccgtt ctttgaattt 540 ttctctgtaa ctttcatggt caacatttta ttagttttag cagaagagat gctaaaaacc 600 agttcttgca gaatttttta aatcatctga cattttcctg gtagggggat ccttttgctg 660 agtaatcaaa ctttggtagc agtcaaaact ggtcatgttt aaaaggtaaa ctgcctctga 720 cctgacactg tttttcatct tgacaagcag taaagctgaa tataagcaca acctttttct 780 gtatttatgt ttgataaaga ccagttggca aagcttctta gttctactgg ctgtgccaac 840 atcttgtgtt gtctccacac aacgaaaaac tgtatgatac atacacctac atcatgacct 900 ttaataaagt ggcatgccag cccataagct tctactcccc cagaagccag gagatgcaaa 960 attgctgacc aaacatgctg attagttcat gcagcttcca catacctccc accgtctgat 1020 ctgcagtgtt ccaacagctg tagttattca cagtggaact aacattctg 1069 // ID JV172821; SV 1; linear; mRNA; TSA; VRT; 817 BP. XX AC JV172821; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15639.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-817 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-817 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; 88ac0b700ff3376dfb3700a355e3bdce. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..817 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 817 BP; 247 A; 185 C; 149 G; 236 T; 0 other; tgctcaccat atcaagcaca aagctcgaat tcgtacactg agcttgcagg ccttggaaac 60 acgtataaaa atgctcaatg caggttaccc tcaactgcac agaaatgttg ttcaaattta 120 attttgttga aagttagata gctgagaatt tcagggggct ttatgtacag gaaaaaaata 180 gttctttgtc tagtttcggt acaatttcaa atatgctttt gtctttgctt cacaagttgc 240 atcagttaaa aattgacgct aaagaaatgt ttaaaaatta cagcttgctc cgtttacatt 300 gatccctgct aaattcattc ttattgtcca caaacacatt cgttcttgca aggcccaagc 360 tcgacgagaa aaagcacaga cacgttgcaa aacataaaga caacgaatca tgctccttta 420 aatccctcat cagatatgga ttttttttaa aaaaagctaa ttatcagcaa acaccggctt 480 tgtttttatt ttcttttaac tgtaagcagt aaagaaacag ttacagcaca aaccgaaagg 540 ttttattcag tatcctcaaa gtagcaaaca ttaaataaag aaattattta accgctaacc 600 gggctctgta caatgttgca gcctttcagg aaccttcggc aggttatcga tccgctggtg 660 atttacctcc agttcagcct tggggtgcac gcatcaccat ccctcgccgg tgctcgcgtt 720 tccaacactg ctcctcttgc ccaccgctcc tggaaggcag aaattggtca gtcccgcatg 780 tctgctctgc ttggcggcaa gagcaatgaa cagaatc 817 // ID JV172822; SV 1; linear; mRNA; TSA; VRT; 2156 BP. XX AC JV172822; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15640.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-2156 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-2156 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; 8fdc5f7184d2b763c3876d3b86495e10. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..2156 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 2156 BP; 609 A; 468 C; 491 G; 588 T; 0 other; ggaaaggaat cagattttat ttttataccc acaaagttaa aaatatgcat ttcaaaatat 60 ttacaatgac tatatatgaa ataacctttg ttaatgaaac accaacatac agtactagaa 120 tatatccacc aaattgataa agtctacata agaagaaaat gtaacagaaa gagagagaga 180 ggtaaatagc atccatgcac aatctgtact aacatggttt ttatactctc tgccttttag 240 atgtgaatgg agtcacagga aattttgacc tagtctcttg caaatgcctc ttgtgacaga 300 gattcttcaa actaacagaa atttgtgggt tgcagcagta ccagtgcctt actttcctat 360 gccagccttt cacatgggga accttgcgtt acagagtgga ctcagaatct ctcagcaacc 420 ctgggaggta gctagttttt atggaaggat ttggcagatg aaaagcaccg gcttaagtgg 480 ctggcctaat gttgtgcagc aaggagcaaa actcacaagc ccttcttcct ctctcctagt 540 ctctcattag ggagtaactt tcctctgcta accattatct gcttttcagg tgagctttgt 600 cacaaggtgg ggcactccat taatatcata taccaggtga tgatatagga aaaaagccct 660 gcctacacat aaggacttgt ctcagtaagg atctgcgatg cagcaatgct gttaccatgt 720 tctggaggtg aacagaagat tattgacaca catccaggtg gttccctccc tgcatatgta 780 ccactgagca actgcaccct ctgtaattaa gaacctctgt atatctttac ctcaattctc 840 tctctctctc cccatcatcc atgcctgtat atttgccatt cctacttgta tcttattcaa 900 gcatgggaat atcaaataga aaacagaaca ccaaaaaaat ttgctgcctt tttttggtag 960 atattttaat acaaaattaa tccaatttct attgtttttt ctcattttaa tgtctttagc 1020 gttctcttat gtgcatatat atatatatta aaaatgtaac aaaaggccca ttccatttgt 1080 atcaatgggc aaataaaggg gtcataatcc tcacttgccc aacccacaag gcacactcaa 1140 gtgtaagtga gaagggctct aggaagagaa aaagatatag cccttgttta tgtggtgccc 1200 tttaatcatc actgctgagc ttgaagcttt gtgaaggtat ggcacaatgt tgcagaaaag 1260 aagagctgtc tgggtcactt gcagatttct agccccagaa gtgctagatc agtaggagtt 1320 gtttctccct ctctttgatg aaggaggttc tgaggattct agctttgtta gtgatttttc 1380 tgcagtggca atggtgatga tggtggctgt ttttgtctat tggcccaaca gttctctcag 1440 cagagtaatt cttccccact cccagtagcc aaccctctcc cctggactcc catcagcctt 1500 attttttcct aagaacaagg tagaggacac cgatgatgaa actgaagcag aagcagatcc 1560 aggccaatat gaagcaatag ccatggtgag gatttgtggc gaacgccact gtgcttgtga 1620 accgagctgt gtaaatggag actgcaatca gaatgcacat ccagcaaacc agcatgacgg 1680 ctccggtcat gtagaaacgt ttgccttttt ccagggtgaa cagctggaca atgaacagga 1740 cgagtgccac aacggagaaa atgatcgaga ggatcataaa ggcttgcacg gctttgaggg 1800 aagcctcatc ctgactgctg actggcagct cagtgcaggt cctgttgcac agcagccaca 1860 gtcctgtcga gatcgttgca tagctggaag aacccaccat ccaaacgttg gcaatggtgg 1920 agacaaagag catgatgaca gtggcgatgt ggaccacaaa gataccagcc agcagcacca 1980 acatcttggg tctcttctag gtggtgtcac cgacacagag agctcgtgtg ggctggggcg 2040 ggtgctggca cctgtggaag aaggagcgtg ctgggctgca gtgccggtgt cccggagcgc 2100 agagccggag tgaaggggag tgacctgctg gtggtttaag tttcctccgg tggtgt 2156 // ID JV172823; SV 1; linear; mRNA; TSA; VRT; 942 BP. XX AC JV172823; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15641.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-942 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-942 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; f371f84309429fe743aff06ed43661cc. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..942 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 942 BP; 245 A; 166 C; 194 G; 337 T; 0 other; ttcattgtgg cagggttaac tagctgaact tcaaagctac aagtgatgaa gaatcctgct 60 agttttctgc ttttcactct gtgacctttg gaaattgtat tggaacttct ccttatgctt 120 tacacattgc ttctgcatac agttctaggt actgaggctc tacagctctg gtgacttagt 180 gacctggcag ataattcatt ttcttgctat ctgttgtaaa actgctaagt gtttggaagt 240 tgtattttct tttcttcctt ttggccacat agacctgggg gcacttggtg aattatctaa 300 aggtgcgaca tcaatagaag ttttgtctaa accatgttaa tcctgagcaa agtgctctgg 360 tttagcattt aagtgtacat ggcttctcca aactgatctt caaagaggac taacgcattg 420 ttttagatta caggacagga agctacattg gagacctaaa ggtgatagtt tgagattttt 480 ttaaatagtt ccaaccaagg tttccttcac aggtttaatt cacagttcaa tagcaaatga 540 tagtttaagt agcttcttca cctgtgatga actgtttaat tgaagaacat cttttactct 600 caggtctgct gattatgatg tgctgaagtg agatttttcc atttttgtgc agccttggtt 660 gttcactgtg ttaaagatca aataccctgc tcaagagtaa aagaaattgc atcctttagt 720 cgtatgtcca ctcagaatgc caacagcagt gtttagggtg attgtggtgt tttgggtttt 780 ttagctactt gcatgtgtgt tcagcagctg gagtaacttc cttgctttgt aaaatcaatg 840 tttctctatt tcctagggga aaaaaccctg aattgttggg acgaaaaaag tgagcttaac 900 tagttctagc atttctgtga tcaatgattt cttaaactct tt 942 // ID JV172824; SV 1; linear; mRNA; TSA; VRT; 1137 BP. XX AC JV172824; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15642.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-1137 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-1137 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; 11d150a69e057cbdc0d18dd6edc52457. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..1137 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 1137 BP; 363 A; 219 C; 253 G; 302 T; 0 other; atcaactgat agactggcct ctgggtaaga cacaaggctg ggaaaagctc agtgtgactc 60 tgcagtttcc cagcacagca ggagcagcag ctgatccttc tgcctcagca atggcagaag 120 ctgtcataag acattgggtg gaaactcctg tacgctacca ggagcagttt gttggccagg 180 agctggaggc acacaaactg aaccaccttt tatatgcttt gccgggccct gccaccgctg 240 cgctgagcga tcaaaggtgc gccccagaaa gcacggccgg gtctgggaag agctgccagg 300 aggaggaaaa cacacaattc cgggtcttgc tggatgttgt gcagttccgc ccagaagata 360 tcattatcca gactttcgaa ggctggctcc tgattaaagc tcagcacgga cccaggatgg 420 acgagcatgg tttcatatcc agaagcttca ccagacaata caaattaccc gacggagtgg 480 agaataaaga cttgtctgca cttttctgcc atgatggcat tttggttgtt gaaatgaaga 540 actcagtgga aaagaattag aaccatgtct atagttatcg gtgagataaa atcattctta 600 atgtaacaaa attttatcag tcatgcgatg ctgtagggtg tagtaagcaa gtagcagtat 660 ttattaaagg aaattatttg tatatatttt ttgtatgctg agtttattgt ttgatgtaaa 720 ctgctgtact gcttgcctcc agctacacat aggttgaaaa cacaggctgt tcaaacacta 780 gcaaactcag gctagtctca gcagaagaaa agaaaaaatc tatttgataa catattgaaa 840 atggagcaca gttttgagtt aagtagcggg aattgtattt ataagcagta agcaattgtt 900 atacatagtc ataaacatta aagaaggaat ggacaagttg tgaatcttac agaaatttta 960 aaaatctgtt ttccaatttt tgagattaaa ttctcctctc tggaaaagca catgaactga 1020 aggataccat caagagaaaa atccctattt ctacagttca agcttctgta ccaaaaaaac 1080 tctcaagaga ttacttttta gaagtgtgct gcatgtttca aactataaac aaaaaaa 1137 // ID JV172825; SV 1; linear; mRNA; TSA; VRT; 3567 BP. XX AC JV172825; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15643.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-3567 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-3567 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; 01451f8384dd2d765ac836193382280a. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..3567 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 3567 BP; 749 A; 929 C; 704 G; 1185 T; 0 other; tttactctaa atgccttgtt ttctcttttc tcttcccttc ttttttgttg tttcttcatt 60 tttcttctct ttttggtcag cttggaagac ttcacctttt tttgtcttaa tcattgcatc 120 actgtcaaca gtgtcctgct catcctcatc agactggatc tcttccacag ccaggtcttc 180 actgagctct aaggtggctc cagatgccga ctgccttttg gatgccttgg cagcactgag 240 tgagtatgga gtcaggtgtg cctctttgtt gtaggcacgt gtgaaagctg ctttcacctt 300 gggatccagc tttgaaaaag gactgggttt gcctccccac gtgcttattt ccatgatatt 360 ttcaacatct tctttcatca agcagtagga gtccataaat gttatagctt gctgtacacc 420 atctgctcca aagtctctca agggctggac aagtgcatcc cgcaaatacg acaagtattc 480 catatttact gtcctcttac atgtctgagt tctgagactc atgtgcattg ccagttcttg 540 aatgatgcga tcgtgtttgc ctgtggatga aaatttcccc agccagctgg gaaagacagg 600 aaactgggac atgtaacccc tcatcagctc ccctgggaga acacttgcat aaatagcctg 660 tgttggaaga agattccagt tctgcttgct acgaatctgt ctgtccacta tatcaccatc 720 acatatactg tcagctgctc tactcaagag caccaagtgc ttttttaaat tacctccagc 780 agcagctggt ttcacatgca catagttctc ttggacaaag agaggtgcta gtgaataatc 840 atggaagaaa agatctgatt tgtctataag agacatacgg gcagcctcct ctccagtagc 900 aaaaaccttc cggaccacat caaagggacc cagtttgatg tcttttttgg ctctgctggc 960 atctgtttta gcctcatcat aagtcagtga tttgtctttt gcacaccaca tattaagatt 1020 atgtaaaacc tgtctgatgt cctgatttgc tgccaggatt atctcttgca tagcaggtgg 1080 gggaattttt aaaccttctt taaatgcaat agacatcatg gcacctttga tctgctccag 1140 ccgaggtctc tgaaaacgaa ggtccaggca gtagtgcacc aaggagcgca tcttggggtg 1200 gttgcgatcg ttgcacatgc aaatgatggg aaccttcgtg tgccggatca aagcaatcag 1260 ctcctgaatc cctcctctgt cttcattgcc tgccatacca tccacttcat ccatgatcaa 1320 tacatgcttc ccgctaactg atgaagatgc accagaacag aagtctttga tgctggtgtt 1380 gttcagtgac tcagcaacca cttccttcag actgttcttg ctgcgagtgt cgctggcatt 1440 cagctccacg tagctatacc ccagctcctt acaaaccaaa gcagctgtag tagttttacc 1500 aactccaggt ggaccagaaa gtaatgctgc tttaaagcct gacccatcat ctttgcttcc 1560 agttttactg ggttttgctt gtccatcttc caaggtgttc ttgtgccagt ttctgagcca 1620 tcggagcagt ttattggcac agctctgctc accctgctgt ccaataattg ccttaagaga 1680 tacaggctta tatttatcca cccacagcaa tttctctgtg ccatcttcat taatctcaga 1740 aaccaagttc cccttaggtt ttggggcttc tttctcctcc acagtctgac gtttgaagtc 1800 cgtaagtttt cgaacagcag tggtttcttt cttgacagat ctgatggttt ctcctttttc 1860 aggagtagac ttgtattttt tattattagc ttcccttttg taggggctaa aattcctttt 1920 cccagcctca gctttctctg gtgtcttttt gggttttgac tccactttct ttgactctgt 1980 ttcagctgcc agctcatatt ttgacttttt gcctggcata gttcgaataa gatcaaacag 2040 accatcctca tcaataattt ttgtacctaa agctgatgcc ttctcacact tggcctggcc 2100 gcagtcccgg cccatcacca ggtaatttgt cttcttgctg acattgccag tcacctttcc 2160 cccgtaacgc tcaatcagag acttggcctc atccctctca atgcactcca ggactcccgt 2220 aatcacaaat gtcagcccct ccaagcagtt ctcagctccc tgaggtatct ctttggagcc 2280 cagtgctttg gggccctcac gattaaggaa gcttcggtaa gcttggtaat tgtttcgctt 2340 cttttcagag tcctcaggac ttatagactc agtcttcttg ggagaaactt tctccttctt 2400 tggtgttgtc ttctcttctt tccctgaagc tgcttttcct cttgatagtg aattttgagc 2460 acctctttcc ttttcagcac tctcttcttt tctaccatta gatgattgtg ggggtaaacg 2520 agaacctttc aactgttcag atttagtttg tggcttcgca gagtaattca tggctgcacc 2580 agctgagtct gcttctttca ctctttctga ctgcctgcac cctgctgttg tattggggct 2640 gctgttgatg ctctgtcctg tttgctctcc ttctgtgttt ttccgagcct ttttcttctg 2700 tggtgtttca tccaacatgg ccagagttct agcaaattct tcatcatcat gcagctgtct 2760 ctccagctct gcatcttctt caagctgcag ttgcctagca atggcctcat catctagtgt 2820 gctgtctctg ctctgtgaag gctctttcct tttacttgct accagcttct tttctgagcg 2880 ttggacactc cttgtcccaa agaaatcaag tgcagaggtg ggagtctgtt tcactggaga 2940 gaggggtttg cttttagctt gtggtttcac ctcctctttt ttcacactat ttgttcctgg 3000 acaaccaacc cctgacgtcc cgttctcctt cggtttcagg gaaattcttt tactggcaaa 3060 atcatcatct tcatctgtct ctgaaatata aacaacagga tcccgcttta gaactttacc 3120 aggttttgaa gcagctgctt ttttctcagg tgacttcttg gattttttca ctgactgcac 3180 ctcctcttct gaatctgaat catagattat tcttctcttc tttttcgtcc gcttctgttt 3240 ggaatcatct tcactgggtg aactattcac cttagtctcc ttttcccttt tcttcccact 3300 tgagggtcct tcaccatgtc taattttttc actccttttc acagtctcac actcttgtcg 3360 ctttccagga ggtataacac caaagaattt ccggatatcc tggttggtat gaccacctcc 3420 agggttagca gccattttag agcaaggcca cctcctgtgg cctaaatccc agccagcggg 3480 caaaggctgg gctcaggact ccctggacac agctgggagc tgttcccacc atgggctcag 3540 ctggcactcc ctcaccatca cagggaa 3567 // ID JV172826; SV 1; linear; mRNA; TSA; VRT; 2198 BP. XX AC JV172826; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15644.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-2198 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-2198 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; e022cb753b70a3a6f092de2ed9aebce9. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..2198 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 2198 BP; 532 A; 522 C; 557 G; 587 T; 0 other; atcagattaa ctgttgaaac acttcaaata agaaaaccta gaaatgctct gcagaaagga 60 aaaagattag gtaggggtag gagtttgctg cgtatgaaaa aaagaacgga ttttcaaact 120 ggtccaataa atggtctagc tggcagctat cccttgattt ttatttttgt agctccacag 180 aaaaagcatt atctacttgt gcaggtgaga tacaaactgg aaagaattct cttgtgttat 240 gttcactcct actggctctg ataacttcct ctcccccctt ttttgggtgt gtctttaatc 300 atcttgactc gtggaagcgc cgtcatcaat cgcgtgaggg ttccagcagt tgggaagtca 360 gtatccaccc tgatctttga atatggcctc aatctgatca ttgaatggat tctccttgcc 420 aagcacttga ggccactcgt gtagtgcctt ctgccaggta atgcctgttc caagggctgc 480 agcaatctgg ctggggtgga agccgtccac tggctcgatc agctgccagg gctcgcctcc 540 catcttgcgc cactcctcgg ccgtttgtct cagtgggaaa tccatgtaga aaatatcaaa 600 gttggcaaat ttctcagatc ttgctatttc tttcaggaca ttggaaagtt gtaacgctct 660 ctccgaggtc aggttcctga gggtctcgtt gggggtcagc cagccgctgc aggggctcac 720 ctggaggcag tcgaggaaag agtagacttg actgtaggtg acatccttgt tcagttgtcc 780 tagaggatgg tatctgtcgt gcaggttatc ccagaggaag cgaccatcca cgaggcctgt 840 tagaatcacg tggctgccgt ttggaagacg ggagtccagg taccgcagag cttgcaccac 900 gttggagagc atttctttgg gtgtggtcat gtgggccagc gtgtcacgtt ccccattgca 960 gacatcattc ccaattgtag catagataac tatggctgga ttgtccaaca gctggtttct 1020 ggccaaactt tttattaaag agaggaggtt tcctgaagaa ccaccatttt gggaaatgtt 1080 ctgcaagtct ctgtgattgc agcgatttct cttgcgtaaa cgtaggtaca gagagtctgt 1140 ccaccctccg atggtggaat tgagaaatcc agtgatctct gagaactggg gccagtcaaa 1200 ctcatcactg aaagccatgg ggagattagc aaatgatttc gctgacatct gcgtgacggt 1260 catccactcg ggagggatgt ggaagtgagc gccggctgag tcccccagga gcacgacccc 1320 tctggagtct gcacctttgc agaacttctc ctcataggga attccatctt ttggatccac 1380 accccatatg ccattgcagt tagagtcact ttttgcatcc caattatcag ggcgcctgcc 1440 ggggtacacg gttgtgtttt tgtcgttgca gtctctgcct cgccagtgat agcccctcag 1500 cgttgggaag gtgctaaatt tatctccatc aaaatcttca aaaggcagtt tatttcttag 1560 aacaaattta atcttctcac agaggttagc cagaagagga aatgcacaca cacttgagaa 1620 ccccatgaag cttttcaagt ccttggaagt tttcataatt ctttttgctt ttcttattgc 1680 aacactcagt cccacctttg gaggagagta gagatgacaa agtggttgtc ctggatcctg 1740 tttacacagc ctcaaggaat ggcaaaccac atcggcattc atttccttgt ctatgagttc 1800 agctatgtgt ggtccataaa gttcagcaag cacataacag aaaccttgca atttttcagg 1860 tatgtagtcg cacagcctct ccacagctgc cttcactgta ctgttgtgcc actgtgcgag 1920 ctgttcgatg acagacacca cgagcacgca tccaacacag gtgtgccctt tgtacagccc 1980 aaaggggagc gaaggggctc gtgggtcttt tccacggggc agaggggagc aagaggcagt 2040 cttcagcagc agcaagagcc agaggatgca gaataaatta aggaatgttt gcctagactc 2100 cttcatcctg ctggcctggg aggacccaga gggctggatg aggagctgtg gctcagcgct 2160 ccggtgtctc ctgcagtacc agcggatgac taacgacc 2198 // ID JV172827; SV 1; linear; mRNA; TSA; VRT; 2697 BP. XX AC JV172827; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15645.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-2697 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-2697 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; f83b25c067f534e402aa33071e32c816. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..2697 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 2697 BP; 733 A; 660 C; 573 G; 731 T; 0 other; tgcttcctcc ctagaaacac agaagatttt ggaagtcatc ctttgttgaa ataagctctc 60 ccacactact gacaaaaaaa ccccaaaaca aaccacaaca aaaaagacat ttaatatact 120 gctaaggttt taataggaga tcaagaaggt gctgactcag tttcttctcc agctactctt 180 caacaaacct tgctcttgtt cactgtgcag cagagtcctc atcccaccaa gaggaggttg 240 cttggcatca agcaagcaga tcacttggta cagtttttac tgaggttaaa taaagccatg 300 atgtcaacca gtgctttctt gatgttcatt ccaaagcgat gagaatccgt ctcagaacaa 360 gatattttgc tggagacatg gaattggatg aaatcttcac ccaagatcat gtaagaaaca 420 ccataaccat catcagccac tggtccaaac cctccaccag aggacagcat ctccgggttc 480 ttcttcagat caatgtgctg ctggggtgtc tgactcgttg acagcctcca aggttctgac 540 aaaacttcct tgaggaaagg agaatctaca gcgaggtact tggacacgac gtagaggcag 600 aagaggtggc ggtcgatgcc cgcccccgtc atggcgaggc gatacaagtg ctggtgcttg 660 tcggctgcct gccggaaaag cttcagcgta ttttccctgc tttcagtggg gtcttccatg 720 gctttgacaa aacgacagga ctccaccgtg cacgagcgaa ccgtttcggt cctgccctct 780 cggaacaggc gtgtcatgga cgcttcatac gttagagaaa actttcccat gtcccggtag 840 tgagcgagct gcagggcaag ctgcacaaag gcatcagggc tggttttcac cttctttatt 900 agtcctttcc caaaaccatc aaaacaaaac gaacagaagt ccacatcatc tgctagagct 960 acagcagtgc tcagagactt ctcaatcact tcttggcatt cttctggaat ttcccattgc 1020 agtttggtag gaatgggaat attgggattg ggatctcctc tgcaatgtcc atctactgaa 1080 tagcacagtt caagatactc agttgccatc acattctccc acaggtgtcc aacaatagga 1140 gcatctgccc aggagtgctc tgcattcaga cccattctgc catttttgaa tattataaga 1200 gtgaatgact tatcaaacca cctgtcataa catttgccat gtatcaatga ttttgcatat 1260 gcatccagtg acttcattgg tcctccttcc tgtacccctg ctccatgtca tccaatgtca 1320 caaaaaatgc tgctttctca atagcatcta aggactgctt gttctttcca cggctaaaat 1380 aagcctgacg agccttagcc catggtactc tatctcctgc agtaagagct gcaagtttct 1440 cttcaccagg ctgaggttct gaatcatcct caagaatcct ctgtatttgc tgttcaattt 1500 ctcggggtct caacagtctg ccatcatggt acagccacac tttgaagtaa cggcccttgt 1560 ggtacacaac aatgtgtttg ctgtctttca catgctggag ggtatctgat tcctctcccg 1620 ggatacggga agtgttaaac atcctttccc actgagctga gcagagtgga acagtggatc 1680 ccatcaaaag aattggcttg atttcttgtc tgtccagttt tttccgatag agcaggatgg 1740 catggataac attaccagct ctagctgcct gcagggttgt gggatataaa gaaaggaagt 1800 ccattgcaaa atagttgcta ttaaccatga ttggtccacg tcctctaagg tagacgtatt 1860 cttcccacca atcactaaca taattggtgg cccaccagga ttttagcttc aaataccact 1920 gaagtcttgg tcccaaatta aaaacaaaat ctttggcaag accctccatt cttttgaact 1980 tttcatcatc cataagtggt cgaactgact ccagatacct attaacagtg tctttaacag 2040 ctggaactgg caatcgtggt aatgatgtct ggaaactgta taacatgggt ttacgccctg 2100 agaaaagttt tacaaggctc atccaaaact tggtgccagc actaagcttg ccatgctcag 2160 agaacatcca gccatggtag gagagcagca ttttcaggga gtagcgcatt gtgacgataa 2220 gggcaaccca aagccctgtg ccaaaaagta ctccactcac aatgttctgt gtttggtttg 2280 acatatagcc agttgtatca agtgttctgt tgatcttggc tattatccct aaggaaggat 2340 caattttagc atacatggtt gacatcacac ccacaactac aataagccag ctagatgggc 2400 tagcagggta aacaccggtg ataattccgt tcttgaatct gatgaacttc ttcttccatg 2460 aatagacacc agacaggtaa atctgtttga gtgcctcatg gctcatacgc aggtcaatcc 2520 catctggagt tactgtaaac tgaaaagcta ctgcctgatg agcttctgcc attttcagag 2580 agagatcttt tccttacagg ctctgcttgc acttcagtct gagtgtcctg aaggttaatt 2640 taaggcacct cttttaacca aaacagctgc agagaccggc ggcgacgggc ggcgagc 2697 // ID JV172828; SV 1; linear; mRNA; TSA; VRT; 1549 BP. XX AC JV172828; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15646.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-1549 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-1549 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; a0659f4aea99670491f989f4bc07b86c. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..1549 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 1549 BP; 368 A; 378 C; 353 G; 450 T; 0 other; gttagcactt ctaccaggat ttcacgttta actttcaaca gctgggagag aatgtccaac 60 acttcaggag gtcccacgtc cagcccttca tcccgacctg tggctttctt cttgtaggtg 120 acattgccca aatacagaat agctgaaagg attgaaaaga tctgtttctt tgttgctgaa 180 aggaagccaa ccatctccat ggcttgtttt aatctctcaa attcatgtcg gagatcttcc 240 ccatcttcaa ttttcaagtt atgctggttg aggtagaaat aatcttcagg ttgcttgagg 300 tgaaattctt tacgctcctc ctcattgact ccaagtagca aataataaaa gacgtggtag 360 ttcctttcat ctttttcttg agaaaccaga cgagattttt caagcaggta tttttcaacc 420 acagcccccc tgacaatccc attctctaaa tagttgactt gaatgaactt cccaaaacga 480 ctggagttat tgttatgtgc tgtttttgca tttccaaatg cctccagaac tggtccagct 540 cccagaatgg ttctctccac accactggcg taccctttct ggctcagtgc agtgaggcag 600 tgaattaaga agtttgtgct ttgggttttc ccagacccac tttcacctga tataacgatg 660 cactggttaa cgtgtttttt aagcattgtg tgataggcca catcagcaat ggcaaaaatg 720 tgaggctcca acttcccaag ctgatggttc tcatacatct tgacatactt ggggttataa 780 atgggcagga acttgaaggg gttaattgca atcaggatgc tccctgcata agtgtagatt 840 ctgtgcttca ggaagcggca cttgagattc tccaggagcg ttgtctcggt caggttgggc 900 agattgcaga gatcatcaaa gtcctcctgg tgccagggca gaaatcccct ctccaccaaa 960 cgcctggcat ccgtctcctt ggagagcagc tgcatctgca catacttgat ggagccatcg 1020 gtgttcctct cctgcagcag gaagtagtag ccatccttct gagggtgctc gtcctgagcg 1080 cgccgcggcc acagcagaac cctgtgcacg ggagaatcgt tgatgtccag cacccattct 1140 tctccacctg actccttcac ctccaccagg acataatgct tggagacatc caagtttaag 1200 atgttgatca catccttgat gacatctgat gatgtgctgt ccttggttgc tgtcactttg 1260 cagcagggag cgctttctgt tgagagttgg gggtaaatat gaagattata ggctgccttt 1320 gcctggcaaa ctgcactgtc agcatctttt aaactcattc tgtccccaga tgggcttcag 1380 tcttccaccc ctgcttaata tgcagtgccc attgtctaat gagtcccagt attcaactaa 1440 ggacaggtgt cttcaagcag ttggatggtg agttcctagt gaagttgggc tcttggcatc 1500 aaagtaaaca ttttcatgat ggttctgcgc cggtgtcgaa gcgcggccg 1549 // ID JV172829; SV 1; linear; mRNA; TSA; VRT; 998 BP. XX AC JV172829; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15647.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-998 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-998 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; 1c2747f6a0a60e41360f44042b9baa70. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..998 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 998 BP; 185 A; 279 C; 223 G; 311 T; 0 other; ctctccgagc cctccaccgt gtgcttctgg cttttctcag acgagctcag cttttcagct 60 tgctcatttt gagcttgatc tttatcttca acagcgtgat ctgtctctga ctcgtgtttc 120 acatctgttg ctggctcact ctgctcatcc ttgctcttat cttcatctat gttggacgtc 180 ttgctcatat cttgctcttt gtcttcattt tcctgcattt ccttctgctc ttcttgagct 240 ttctgccttt ctagaaccat cttctggtat ctcttcctct gcaggtgccc cctgaccagg 300 gcctgcagga gacaaatcct cctcctgagc tgcaggaagc gtttcctctg ccggtggcgc 360 ctccaggccg cctggatctc gatggcagcg ttgttcctct gcagggccat cctgacacgg 420 cgcgagcgcc agcacgcctg taaaacaacg gctgcctgcc gcatcctgag aaagcgtctc 480 ctctccaaaa ccatcctgag ccagctctga aggaggatga ttttcctgat cacttctttg 540 tgtagtgtat cctgtagtat ctgccgttca gcctctttca taaaaacctt ggtcttccct 600 atttgatagt agttttcatt cagttttagt ttattcaaat aagcacaaat gtcttccttg 660 gaggctttgg catttttggg cagtaacacc tgaaactggt caatgaattc ctggaatgtg 720 tatttggcac tgtagccaga cctcctgatc cgcacagttt ccagcatgcc cgtgtaccgt 780 aactgctgca gcaccaagct ctcatcaaag agcatctccc tcttctctgc gttggagcgg 840 atgcagcgga tgaagaatgg ctcagctctg cccagggtct ccagcaactt gttcagtgaa 900 gactggaact gggcacttat gctggggggt ttcttcttct tgtgcaagtg caaaagggac 960 tttgtagtcc ggtcatgcag agtcatgctc atgatgag 998 // ID JV172830; SV 1; linear; mRNA; TSA; VRT; 1789 BP. XX AC JV172830; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15648.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-1789 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-1789 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; a12bc3a5a7fec019a01485945c639b39. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..1789 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 1789 BP; 578 A; 351 C; 323 G; 537 T; 0 other; ctttacttat ttcacatctt ttcctctccc ttagagttaa tgttctgctt ttggctcaga 60 gctaattcta ataaaaaacc aagaacttgg gaaacacaca gatggcccca cgctataaat 120 tacgtggttg tcttatgtgg gcggtatgta aaacattgct tcttcactcc ctatagcaag 180 cctgaaatca gaaggcacat ggtgcttgat aaggcttttt acattttcca ttttcaatgt 240 gtgtaaaaac ttagtgacct tcagaaataa gtcttgtcaa ttaggaaaac ctttctgtaa 300 cgtcatgcct ccacatccaa aatgcttttc attaatggtg gctttattct tgccagagga 360 aagctacaca caggaagaaa acaagaggag aaaatccaac aagaaaaaga agcattcgaa 420 catgagtgaa gtggtttaga atattacccg agtccactgt tggaaacact cgtgaaagag 480 gtatctgtgg atggatgctg gtcacctgaa gacagtgaga aagcggatgt gagaaaggaa 540 ggacctggtc atccatcaga tggaatccag acgtgacaat tagagttaat gaaccacgac 600 ccatgaagct gcttcagcac ctttttacag ccccacttca tggccttcat aaaagtacca 660 gggcttattt agagcacatc tgctctaaat tcccaaagga gaaatttgca ttcagaagtt 720 attttttgtt ccttcaccac ttttcattaa tttataaaga atatttaaca gcagtgtatt 780 tacttctcta cctattcagt caacagaata tcagaattga aagataattt tttacaataa 840 aacaatatta ttataatagt tatttagctt gcattagcat taataagctg ctgaggctga 900 ctgaaaagta ccaggcaaat gtggagtttt ttaatttctt cagtatcacg gcatctatat 960 ccaagtattg cctttggttt taaatactta gaaatagagt gctttgcaaa aatcaggttg 1020 atttactgct tttgcagagt gcctcagtca gccttggtac tgaagtcctc agtttcttca 1080 cagagcagat ataactaatg aagcaatacc tctttctccc tgaagtgcag aagatctgct 1140 gaacttctaa ggctgaggtt ggaactgatc cttcttgcct tatggacaaa gcatttctgc 1200 agtttttggg tcctattcat tccattagtc tcaaccagtg ctgcacccac actgcttctt 1260 ccatccacat gcaaaaagaa gcaaagggaa ggacaaagta gctcatgggc taattgttag 1320 aaaattccct tttgcatact aggagatgac tggaagagct ctgggctggg ctacaaggtg 1380 taatatgcag aggaaaaaaa gtaattactt tcctcaccac aatgacatga ataaaaatat 1440 catgaaattt atcctgttga ccccaaatat cacaaatttg accctgaccc aaagcttcag 1500 atggcaatat ctgagcagcc taattgtggc actttcagat tgtcagtgtt cttcaggaaa 1560 gtaaagagaa tactttcttc tcatgttaac cactaattta aaaaataatc aatctgcaca 1620 ataatccatg accaagtaaa tgctagagcc atttgctgga agaatacatg tattttctta 1680 agacattatt ggtcagccaa agtctgatgc atatactaga acaaaaatta ttttccaaaa 1740 caaatcagtt cactaacaaa actgatatct atattacaat tgctttttg 1789 // ID JV172831; SV 1; linear; mRNA; TSA; VRT; 1870 BP. XX AC JV172831; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15649.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-1870 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-1870 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; a15b50c24ac30552f8ae3b4c8ac27ab7. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..1870 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 1870 BP; 597 A; 401 C; 355 G; 517 T; 0 other; ccacagctgc ccttgacaga ggttacaatg atgtctaact actgtaatgc acattacatc 60 aagaaccttg aaagagcctc tgagaaaacg gcttcacatt aagcatttta aagaaaggtc 120 ataaatactg cactgtacca acagtacctc ccaatgtcct ccttatgcct gaggagcatt 180 tgtgttttgt aagaagctac tacatagatg acaccaaacc tagaggtagg ttataggcca 240 aggtaagtta caggcaaaaa aaaggaaaaa aagaaaaaaa tccctttaga gctagtcact 300 gcacagactg cccagcagga agcaaggcaa agtgtcaaca actctttcct cccaccctaa 360 acattgttca cacagtgcat ttagttccta gttgccctaa gaatgagagt ggatcatcag 420 ctgctagtaa atgcagtcat gccaagagaa cagcttgaag ttattcaagc aaaaacctgt 480 tactgtgcaa aactggtgca ctggactgtt accaaccaga cctccaagct tagcaagtga 540 cccaacagta gagaaccaag gtatttttct tttgactggg aaatacttta gtaaccaaca 600 ggagaacata ctgctgagtc tacatggaag gagtcaaata tcagcttgta tcaaaacttt 660 aaagaaaaaa aaaaaattag aaaaaggttt aaaaaaagca cactttgatg agaccaagtt 720 tttaaaaagt tcctgtacca aacaagccgc tagaacagct catctcccct aaatcctggg 780 atcaacacaa ggttgataac aaatgtatgt acattgagaa acacacctgc aagtacaata 840 gttacagcaa attaacccca agttttaatg gtgtatgtaa tgccttcagg tcacaaaatg 900 tggacaaaac gttaatctta actccctctg tgcactattt ggtgataatc aaagtaatga 960 tgctgaagat tcattttatt tctacttcca aaggaaaagg gtaaatggtt aaatatgtgt 1020 tgtccaattt gttctccact atacgtacac ccacacacat acacacaccc ctcaaactgc 1080 actgacattt ctttttgacc aaaagagtag atcctgggag taagtgcaaa atgcaaaatc 1140 aactgacaga aaatgctgaa caaacagcat cataaaaata caaaatattt atattactga 1200 actattaaca gatgatgttc tctgtttctt taaaactttg gaaccacata gctgatttct 1260 taaatctagt ccatgccagc ttccagaact attaatgttt tagttagctt cattctttga 1320 tgcttcatca aaattttcta cgagatctgg gacatcatca tcttcttcat caatatcttc 1380 agattttggc gctttactat ccaacacttg tcttgggaat tgttcagcta acttcctgag 1440 acttgttaag ctgtcagcac caagctggct taagatgcct ggaagcattt ctgtgatcgg 1500 tttagcctct gcatgaccag taattgcaaa agtgttggca gagagggaag cctgaacctt 1560 ggggttgttg aagtgaataa ctgttccatc atcttttatc atgttcacct cttcaatgcc 1620 agcaatgtta tttacagcca gttttttgag ggaactctga agttttttgt catcagctgt 1680 agctgttctg tgcaccacct tcttctttct gcgagctgtt ccctttcctc ctattcggac 1740 ctgtgcttga agcttggcca gtttttcttg gttcatagtg ctacgtctga gtgcggcgga 1800 gcccccgctg ccaacacgcg gcgagaacaa gatggcggcc gaggaaggaa agagaggcgc 1860 acagagaaag 1870 // ID JV172832; SV 1; linear; mRNA; TSA; VRT; 699 BP. XX AC JV172832; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15650.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-699 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-699 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; 52f8b4fc1f2da5c5b75ec204fe6c3850. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..699 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 699 BP; 197 A; 137 C; 123 G; 242 T; 0 other; acttgtgagc atttttgttt atgtggcttg atcagcatca aacaggagct gtgaggcagg 60 ggtcctgtaa aaaatagctt atggtcatgc aatcaggtga tgtttcataa tggatatgca 120 cgacaggcac cggctgcctt aattcctgca attcctaatt gctgagcact tgactttgca 180 acctcaacaa tattattttc ctataattaa tatagtttaa tgtagaccta gactattttg 240 aaaaattaaa gatcttgcca ctatggtaga gtttagctca aatagattcc ttgcagaaac 300 atttcgcttt agaggttgtt tttttttaaa gttctacatt tcttactgtt actctctaac 360 ttttagctat gtaagtttga atttgtcctc cttttgtccc ttctcctttt ttgttgtact 420 actgtcattg tataatggta ttgtcttttg attctgccaa aaaaattacc ttgttaagtg 480 ggtagcctta cacttcctat tttatgccca agtagagaaa tgaatacaca cagctgtctc 540 tctggatgga tgggtaaatc tcaacaaagc tacccatggt attgtcagca ctgcacagac 600 tacagaatca catcccactc acatgacaaa ggggcagatt tacagtaaat tccaatggga 660 attcaccatc atccctttta ggatgtgcat taccaaaat 699 // ID JV172833; SV 1; linear; mRNA; TSA; VRT; 372 BP. XX AC JV172833; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15651.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-372 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-372 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; 58240cfb5d9aa02d2609eaab30473754. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..372 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 372 BP; 62 A; 78 C; 79 G; 153 T; 0 other; ttgtatttgg atccttgttt gtatttgtat cgtcaaattg tttttggacc cttgatttct 60 gtttggaccc ttgattcgct tttgtatcct tggtttatgt ttggagtctt gacttgtttt 120 tgtatccttg gtttatgttt ggattcttga atgtttgcat tctcgatttg tttttgtatc 180 cttggtttat gtttggatcc ttgattcatt tttggattcc tgttctgacc ctgccgcccc 240 agagctcaaa gcacaaccaa attccatggg gaaatcctca atttctggcc caaaatgtcc 300 ttttgggaat cccctggtgg tgggagacag ctccacggca gctctttgtc cagggaattc 360 tcccaagttc cc 372 // ID JV172834; SV 1; linear; mRNA; TSA; VRT; 645 BP. XX AC JV172834; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15652.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-645 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-645 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; cf24d54c3b1fa66dc16b207fb4a76945. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..645 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 645 BP; 196 A; 140 C; 113 G; 196 T; 0 other; atgtctgaag tgaagaattc aaatttgatg taaacagtca agcaaatgtc tagaatttga 60 aggtactatg gagtgctcaa atgccagctc tcacaaaggt cattgtctgt acaacagcag 120 cacatcagtt tctattttac actcagttca cactagagca gagacacatg tggttcccca 180 ggggctgcct gagcagctgc ctagaggaaa gcctcccctt tccctctaat tcagggccat 240 gtctaataat gtacaccctt cattcttcat cacagctcaa tttgctccat agaagtttca 300 tccattctcc catccatcag ctccattccc cctctcccca gtaagaaaac agaagtccca 360 aatacctctt accctctgta atcataggtg attattttaa aggtttcttg agtgtatgga 420 aacaaagtaa tttggaagtg atatgaggga agggagaatg ctttgtagta cattccagaa 480 tcacttcttt atttctattt tagatatata agaaagaact aagataaaac ttggggcaca 540 aaggaactgt cagaactcat ctgtcctgga cattcttctt tctcctcttt ttaattattc 600 agagataaaa ttctaggcat ctattcaaat gagtatttat tggaa 645 // ID JV172835; SV 1; linear; mRNA; TSA; VRT; 2431 BP. XX AC JV172835; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15653.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-2431 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-2431 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; d34905363fdf659f88ebfef032415a0f. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..2431 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 2431 BP; 621 A; 507 C; 604 G; 699 T; 0 other; ggggggctgc ggagcgaagc tactgagtgc caccatgttc cagggcgctg aggccgagcc 60 ggccaagcct agctccaggg tattgaaacc cccaggggga gattctagta atctctttgg 120 gagtacagaa gaagtgtctt cttcaagcag gccacaccgg atggcatccg atatctttgg 180 agcttcagaa aaacctcaga acattccaaa aagaacaaac cctccaggag gaaaagaaag 240 tggcattttt gaggactcta gttctgctca gcctcgtcca cgcttgaatc cacctggtgg 300 gaagacaagc gacatctttg ggtctcctgt ctctcctggc attgtgcgag cacacccgaa 360 caaacccaag gatcacattg tcttaaaaga agaggaaata ccaaagaagc tagaagctac 420 agaaaatacc aaaccacacc tggaagacgg aggcgagaaa aaagctctgg gcaaagagga 480 gcaatgcaag gagccagaac ccaagatgga caatcacgag ccccgactag gaccaaggcc 540 acgctcacac aacaaagtcc tcaatccacc aggggggaaa tccagcattg cattctatta 600 gggtcatcat gtcactgtca ctaacggaga agctcttgtc tgtggcggtg aggtcggtta 660 atacactatt gcttgtgaat agattcttag gcagatgaat gagggttatg ttaaagcacg 720 taggaaggat aatctggaga tttgggagga aaggctgggg agggaatggg tgctttgtgg 780 gagatgtgag tactggcctg cctgggtggg tggcagagcc agacattagt gtaactttgt 840 gaaaaattag tgctacttag tggtgagttc ctcagactgt taggtaagaa cataactagc 900 tagcttgtgc ctcaggacgc tcttgtagaa tcaggcttcc atacagtcaa cacatcaaac 960 actgtgaatg ggaaggggcc tgaaggtcac atttgaagat tctggagtac tgcaggtagg 1020 ctgggctttc ccctgggcag tgggatgcag cttccagtgt gagctgactt gcagtcgtgt 1080 gactgtaaat gtgctctgct ggaacaagta gtgctgacat ggttaagagt gtcttcagtt 1140 attgcttctt tttctccttt cttgcttgca gcacatgatt gctgatacaa ggacaaaata 1200 tgttgaaagt ttcttttata ctcctaaaca atcatatatt tgtaaagatt gtggtcttcc 1260 cctgcctagg tattcaggtc ttttggatgc ttttagtaat ttgctgatta ctgtaactag 1320 ttcttcacat gtggcagtcc aacttgctgt tttgtgtagg tgcttccagt tgagtgcttg 1380 tatgttttct ggtaaaaatg tggatgcaaa caatagcttt atggtactct ttgaacagcg 1440 gcaacttgga agtttaccat ggagcatatg ctgaggtgtc agccaggtgt ctctgaccca 1500 gcctttgtag aaagggcttt cacaggtttt cacttggctc cctgtggaaa ccaggacagt 1560 tctcctgtct ccaccacagt gaatttcctg ttggttttgc ctgtgctgag tctgttagtg 1620 aattcttctg tcttgcatca gccttatctt tgcctttgac tgtctcagat ttttgttggg 1680 aaaactatgt gagttctccc caactatgtg agttgcagtt gattttgatg tagattacct 1740 tagttggaaa atcaaagcca gcacaaacag aaggtttgta ttactaaaat ctgtcataaa 1800 tcatgtttgg aagatgtgca tgttttgcac agatgttttt gggggaggat ttgttctctg 1860 aatggatttt attatcatat ccagagcttt gatatatgaa tgttatctct aggtgctttc 1920 tgttaaatat attgaatact gatcttttaa atctgacata tcaaaacagg cgttgttcag 1980 gtacaccaaa gaacaagtgg ccttattgtg tatacccact gctgttctag cccacattcc 2040 ctgagaactg ctgccattga gatgggatgc tgggccaggt gctaaacctt tctgtgattg 2100 taatgcttcc taggctgctc agctcccttg tgccagcagc tatgggtggc tgctttaaga 2160 cttagctgcc ttttcaaata gtgaaacgta ggggcagtgc tgggatagaa acagccatgg 2220 caagtaggga ttcaaatgcc tttgtacctt tcagattggt ttggagctgc ctgttaattt 2280 tcccccagga aaacaaggca gtagttcaaa ctgcagccct ggaatgaact tacgttactt 2340 cccagtgtgt atttcttagc ccctcttcct gagtctgtgc tctccagcct ctgtctgagt 2400 ctcagacaca ttagccattt cagttccttg t 2431 // ID JV172836; SV 1; linear; mRNA; TSA; VRT; 2686 BP. XX AC JV172836; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15654.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-2686 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-2686 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; 62964ccfb327e03265c4e74dcae6da61. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..2686 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 2686 BP; 611 A; 704 C; 621 G; 750 T; 0 other; agctgcctga cctgtctgga ctctgttctg tctcccaacc tgcccatccc tggtacaggc 60 acatcctccc cttggagatc cctggtttct gttagctcac agatttaaaa acacaaacag 120 atttagtacc cttggtggga tgctgctgat caaaaagcat tcctgaaaat gcatcacgat 180 ccagttttct taaaggaaca aagtgagact attttcccca tcacctggaa gaattgtaaa 240 agcctatttt tgtaaaaata caaggaacat ttggaaagca gcagagtctt acgtactttc 300 ttcttcttta aatgaaaacc ccaacaccat aaaggatgaa ggcacagtac ctttctgcgc 360 tggacaagca gtgcagcaag cacagcacac aaaactggga gccagaacaa aaccagaggt 420 ttgtaaacac caacctgctg gggagccctg gggcctttcc tgcagaaagg gacagccctt 480 ggagcctctc gtgccaaggg tgtgcacaga ggggggactg gcacccctga actgctgcct 540 gagagctctc ctctgactta gcaaacaaaa ccagacccca gcccaaacag gcctggacag 600 gagaggacag acaaagcagt agcagactgt tcactgaacc acgccggctg ctcagacact 660 tgggaacagg agttctggtg aaggtcttac ctgtgactta acccaagagc tctggcactg 720 cctgagggaa tttttaaagg gctaaacctt tccacagcac tctgcatagt taatgtaaca 780 ttcgtcctgg tgctacagca gtagtcccac attaaggcaa ttctgtctat tttgggcaga 840 ccggtcccaa gccctgcagc agcgcattcc cagagcctcc ctttgccttg gagttattaa 900 taagcactat ggctgttatc aaaatagaca ttaggttcag tagtgcattc atttaacatc 960 tttggtgctt gcagcttagc agcatcttcc tgccttcgct cagcccacga cttccaacat 1020 tcccacggat ctcagacaga actaacgttc caggaccagc caattttctg taactgtttg 1080 aagatcttga ccactgaggg gctccctgag tctcactttt acctccagtt tccctccagt 1140 gggctttctg ccatcaaaaa tctcgatgat ctctctgact tcacattctg attccagctt 1200 gtccagcttc aagtgtgctg tccccacgtg tttgtcactt ctgaagaagg accctttgtg 1260 gaacacttca aatttgattc ctttggagcg aactgcgcgt cggaagccgc ggtggttgcg 1320 gttgatgttc agcttgaaca gctggttgta ctctggacaa ttgttattgt taattacagg 1380 tgttttactc ttttgaggtt gttccgcact cgggtactga aattcaaact tcacaaacgc 1440 atccaaatct cttggtgaca cacctggtgg ggctggtagg ttcatccccc tgacaataag 1500 aagatgcatt tctgtgctgt tgaggtcaga aaatatcctt atcattttaa atgttctttc 1560 ctcaaagtga tggcttggag gatccattcc ttgtgctcgt gcaagctgta ggatctccat 1620 atccttttta caaccttgtg ccagtttctc aaaccgagtt gtttctgcta cgtttcccag 1680 atgcatgaat tgcttggagt actgcacaca cctctcatgt tggtccttca gcaattttac 1740 aagctgtgca taaacttcat ctgctttctg agacagcctg acatcttcat ggtgtacaaa 1800 gataaaatca ccctcatcat ctgtaggagg tgatggcagc ttggaaatat caacagtttt 1860 gccagatttt gcctgctcaa tctttaggtc aaggcccttg gctgttctga gatatgtctt 1920 tgcctgttcg aggttgtttt ccctctttgc tttgatggct gccttcaggt attgcttctt 1980 cctgttctcc agaaattcca gctgctccct aacagctgga gggagatgat ccattgcctc 2040 tgccttgtcc agggaggagg gggatgcagc tcgtttcagg tgctcaggag agctctcctg 2100 agctgccgca ggtggaactg gagttggctt cacaacctga gttggcttct tggcaactgg 2160 ggcctgggga agaggctcgc tctcctcctc ttcatcattc tcctccatgt ttgccagctt 2220 gctggcagtc tccaggacag cagcgattgt gctgccacca tctgttgctg caacaccagg 2280 aagaggggga aatccaggag gaacaggtag ctcagcaaaa ttcacttttc tccctgcctt 2340 atgggctctt atggcatctt ggtattgctt ggctatcctg tcgtgcatcc tgcccttgcg 2400 atcgtccccg ctggccttgg cctgggctgc tgctgccctg tacctctcca gccgctgctg 2460 cagcgcctcc agcaccgtcc tgggctgctg caggcactct gaagcttctt gggtctgagg 2520 ttcaggtgtt gcaagatcct gggaacttcc cacccgaggt ggtacttttt gcttggatgc 2580 atcttgtaca tgtcctaagc tttcaagatc ctgaggagat ggaggcatat tctggaggtc 2640 tattggctgc ccactgtcca aagcttccaa caccacattg aatttc 2686 // ID JV172837; SV 1; linear; mRNA; TSA; VRT; 1285 BP. XX AC JV172837; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15655.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-1285 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-1285 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; 0495996cc555866217ffa0a1559380fa. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..1285 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 1285 BP; 347 A; 296 C; 222 G; 420 T; 0 other; caaaatacct gtatttatta caccaaaact caaagtccaa gcagttcaca tatttctttt 60 ccttctaggt tgtcccaaat gtgacaacaa caagacaaaa atgtatgtat gtatccaaac 120 aaaaccacaa aatcaagtac aaatcaaaat caataaaggt atgttcgtac aaaactcaca 180 tggtatttaa atgcaacaga agtggcatac acagattacc aggtacaaaa agacagatgc 240 aaaaataaaa gctagcattt tatgtttctt gtgcctgatg aaatgtagaa catctcacta 300 gcagtaacat ggagggaata caacacagca gtgttaactc agattgcagc tcttatttac 360 agaatttaga tggtaacatt gcagaatatc ctttctttca aaaagaaaag tattttttat 420 tttcattaaa aataccttat aaaagctgga tattatcaac cgttactgga gagcactgct 480 gctgtcagtg gctatcagaa ttcacagctt gattagttaa ttgctattct acagttcagg 540 ctacacctgc agtgattgtt tcagtcagtt ctgggagaca gtaactcctc tcttacctga 600 tcaccttccc cagggccctg catgggcttt ccacatccag tgctaatgct gactgcagca 660 ttaacacagc aggacaggaa taagacaacc aaaggggatt ttctattctt cggatttttt 720 taattttgcc ttttttccac ttgaggaagc tttggctttg gctttgcagt ttcagctggt 780 ttctttttca acgtttgcct tctggaacgc accaggtcct cacgtcccag ctcaatcatt 840 tttgcttccc atgatttcat ttcattctca taccgaacct tatcatcctg agcaagctgc 900 aagtatggct gcttttgggc agcagacatt cttttccacg tatcaaacag tttcttcagc 960 tttgccacag gtgtatttcc ctcactttct tgaaaatttt ctgacaggaa gatgttaaag 1020 gcgctacgag ctcttttagg ttttccaagc agattcaatt ctctttttgc cttgattgat 1080 cttctccttg ccagctgttt tctcctttcc tccttcagag ctgcagcctg ggctggggtc 1140 agttgtgctt tgtaagcagc cagctgctcc ccatatctct tccagtctgt cttccttgct 1200 tcctcataaa cctgtttctg tgatgctggt aactccttcc atgcacttgc ctaatttttt 1260 aaccagttct gtgttgctga cctct 1285 // ID JV172838; SV 1; linear; mRNA; TSA; VRT; 480 BP. XX AC JV172838; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15656.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-480 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-480 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; 1ef6a1ddc5f1e83c88c2f1e568bcf3ab. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..480 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 480 BP; 182 A; 69 C; 88 G; 141 T; 0 other; aggagtagaa agttcaacca cttcaatact gatttatttt aagtgccagt aatatcagga 60 aatcaggtta gacacagatg gtcagaggtg ctataatatg ctgtaaactt ttgattcagt 120 caaacaaaga ctaaaaagga gaagcttcca tgagtcactg agctaatttc cagtttatga 180 aatacataat atctaaacat gagacctgct ccgctttatt accaaagaag tgctcagcaa 240 gaaaagagat aggaaaatgc tgaagatcta aaaattttac aggttttcag ttgtagatgc 300 cagttgttaa acctaagtgc taattttcat ttgcttaata actagaagca agataatttt 360 tgcatagcta taaaacaact aatttatgtg ggaaaaaatg ataccaatta cacataagag 420 taattgatgt ctttagcgat cagctgagga aacagaatat tagacttaga ttatatatgg 480 // ID JV172839; SV 1; linear; mRNA; TSA; VRT; 1609 BP. XX AC JV172839; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15657.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-1609 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-1609 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; 0cd62cbcd102f6b36298f87ff0295ade. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..1609 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 1609 BP; 456 A; 372 C; 354 G; 427 T; 0 other; cttcagctgc atataaacct taaaaatcag taaaaagaca aaaaaccagg gagagggctg 60 ttgaagtact ggttcagtcc aattacagac tgataacaga ggaaaattgt tttaattttg 120 ttctacagaa accaacaaag taataagtaa tactttaaca cagtgccttg acaggttaat 180 ttcaatattt taataagaat tcatatcctt ctgaattcat aaggataact tgacctcaaa 240 agccagtaac tgggatgaca cctgaacacc taaatgcttt tgactccttt ttaagtgaac 300 aggattggat ttaccagatg tagcttcagt actctagaga aaatacagta ttcactatta 360 atactagaaa gagagctcta ttaatactgc atgtaaattc attgagaact ttcacataaa 420 tcagattaaa acccacgaga tcctgaattt gagcaggaga aatgagggat ctgcagagat 480 agtacattct acaaagcaat gtatgaaaga attgtgtgaa agaagagtgg ctcaggagag 540 atcacgttag aattcagcac cttgtagtgt agcacagctg ttcagtgaga tccgacctgc 600 atgagtaaga atcctgattc ttaacagatc ttaacagatc ttgtggcact cattgctagc 660 ctggagctga actccaactg tacaaggatc catcttgctt tctcagtgca aagacagcag 720 tgtggttatg gacataccca cactgaaaac aacagtgaaa gtgagcgcat tcaccccgcg 780 agtgcggaca agtcccaaca gcttacagca aaccaaaccc tgcgtgtgct gtgtttaccc 840 aaagcatggc ccatgcactc aggatgggac agaggccatg tggcccctag cccacgtgct 900 tgttcctgat gatctccccg ccctcgatct cgatctgctc gtagagccac ttgcggtcgc 960 agcggcactc ggtgccgcac ttgttggagc cgcacttggg gcaggcgtag aagcagccca 1020 ggcaatcctc gtccaggcag tcacacaggt ccatcccgct gtacagcagc agcccctggc 1080 tgtcatacac cttgctcttg gctggaatta cctgcctgtc tgaattaaac actgagattt 1140 ttgtttgcct tcttttttcc cttttactgg tctctggagt gaactcagtc tgccgtcctg 1200 ggttagcaaa ctgcagagac tttaaagcct tagcagtacg cccatctggg tccagccttc 1260 tcctctgtcg ctcctcaggt tccacatcca cacttccatt gatgatctgc atacacttgg 1320 gacaaagctt ccaaccagga acaaactgcc ttccaaactt ggcactcagg aaagctgcat 1380 cgtccaagtc aatggctcgc aagtttttct ttgacagctt tctgtggatg ttaaagggat 1440 cacaacagga tttttgtaag tcttcaaacc tctcaatgta aattttggcg tggtggaagc 1500 agattgtgtt gttctctgac agggttatgc cagtcctcag ctgaagcagc aggaggtcag 1560 aagaagagat atcttgtttg gttttgaggc cagtgtgacg ggtgtaata 1609 // ID JV172840; SV 1; linear; mRNA; TSA; VRT; 1080 BP. XX AC JV172840; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15658.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-1080 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-1080 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; 010945408a71149d18c79e3e24942432. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..1080 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 1080 BP; 297 A; 200 C; 206 G; 377 T; 0 other; cttttcttgc ttctctattt aatgcacata gaaaaagagt tttttaaaaa attggtgata 60 atttcaaggg gtagaaaaca cagccctaat agtttccata ggttgtgaaa gcaatttctt 120 tagtgtttta tgtcaacgta tctacacttc cttccaaatc catagttagc taaggaacaa 180 ttgtttcttt agtagagaag tggagcatga aggatgttct tccattcctg cttggatttt 240 ggaattaatt ttaatgaact tgaggtaaaa ttaaacattg gtctctaaga actgtaatat 300 ctttagtaca gtttccctct cttttgaaat gctgtttgat gaaggcattc agcattcttt 360 ttgcaatgga aagctttgat tgcctctgca gtgttattgc aatactgggc ttagtgcttc 420 attttctgtc ctcaaatgca attcagattt catcctgtgt tgataaagaa attaacagtt 480 gcatttaaaa aacagtttgt acacaaaatg agtccagctc cttagcagtc tgcttggcat 540 gtaatgctgt gataatacaa aactgaaaat gttcaagttt aatacatcat agatggctta 600 tacattatga aagataacag ctgtaccaga atggatttta aattccaaac attgttttgc 660 ttaatgcttc agtcttgtat tttttggttt tgcagcagta gttggtctca tgttgtatga 720 aaattgcctt gattttccca tgttctccaa caaattaaca cactctaagt tgctcactga 780 gaccagctgc acatcagaaa gtttcagctt ggaaggagat cttgctgact gacacgcttt 840 gccttcctga gaacgcccat atatctgctt taggatggac tgcttgctgg tttttatggc 900 tgaactggtt ttgtttacag acttcagatt tttacatgaa ggaactgatt tcagggggct 960 gtggttcagc tgcttcttcc aagcaacctg aatgaagaag gcagctgcct cttgtctcca 1020 tttgtcttca tcttccttgc agagccgctt agcactcagg agctgaaaca actcccgtct 1080 // ID JV172841; SV 1; linear; mRNA; TSA; VRT; 1385 BP. XX AC JV172841; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15659.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-1385 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-1385 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; d3f084d43699bb62b60b9b9c0af55bcf. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..1385 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 1385 BP; 431 A; 340 C; 324 G; 290 T; 0 other; ggagatgaca ggaagcctaa accaagtgac ggccatgtca aaaagccata ttatgatccc 60 tcaagaacag aaaagaaaga gagcaaatgt cctacccctg ggtgtgatgg aactggccat 120 gtaacggggc tttaccccca tcaccgcagt ttgtcaggat gcccacacaa agatagggtc 180 cctccagaaa ttcttgccat gcatgaaaat gttcttaagt gtcctacacc aggctgcaca 240 ggccggggcc acgtaaatag caacaggaat tcccaccgaa gcctctctgg atgtcctatt 300 gctgcagcag agaaactggc taaagctcaa gagaagcatc agaactgtga tgtgtcaaaa 360 tcaaaccagg catcagatcg ggttttaagg cccatgtgct ttgttaagca attggagatc 420 cctcagtatg gctacagaaa caatgtcccc accaccacac cccgctccaa cttggccaag 480 gaactagaga aatactctaa gacttcgttt gaatataaca gttatgacaa ccatgcctat 540 ggcaagagag ccatagctcc caaggtgcaa tccagggata tatcccccaa aggatatgat 600 gctaaacgct actgtaagaa ttcaagtcca accagcagca caacaagcag ttatgcccct 660 agcagcagca gcaatatgag ttgtggtgga ggcagcagtg ccagcagtac ctgcagcaag 720 agcagctttg actatactca tgacatggag gcagcacaca tggctgctac tgctattctg 780 aatctctcca cccgctgcag ggagatgcct cagaacctct ccactaagcc tcaggatctc 840 tgtgcaagga atcctgatat ggaagtcgat gaaaatggga cgttggatct gagcatgaac 900 aagcagaggc agcgagatgg ctgctgcacc attttgaccc cactggagcc aatgtcccca 960 caacgacaag ccgtgatgaa caaccgctgt taccaactga atgagggtga ctgctgggac 1020 ttgccagtgg actacactaa aatgaagcca agtaggatag atgaagatga ttccaaagaa 1080 attaatccgg aagatttgga tcctttccaa gaggcacttg aagaaagaag gtatcctggt 1140 gaagttacaa tcccaagtcc taaacccaaa taccctcaat gcaaagagag caaaaaggat 1200 ttaataactt tatctggctg tcccttggct gacaaaagca ttcggagtat gctggccaca 1260 agctcacaag aactcaagtg tcccactcct gggtgtgatg gctctgggca tataactgga 1320 aattatgctt ctcatcgaag tctttcaggc tgtccacgag caaagaaaag tggaatcagg 1380 atagc 1385 // ID JV172842; SV 1; linear; mRNA; TSA; VRT; 2242 BP. XX AC JV172842; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15660.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-2242 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-2242 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; 2909aa669e5bf756a55fba9f85e6b860. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..2242 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 2242 BP; 642 A; 522 C; 504 G; 574 T; 0 other; aacatgtccc cagtaggttc caacacacac acacaaaaca atactgaaca gcaatacaaa 60 aaccccatac aatagcagtt ctgttacaat accaatgaat atcgtgacat ttttagtgtc 120 tctgcatctg tctcaagtgg tgtcaagtac agtgttttaa aaatgcgttg cagttagtag 180 cctcaagatg taactctccg ttactttttt ttttgtgttg tttttggttc aaaggtaaaa 240 atgcccttta ttcttcagga cactgtggag tgtttgttgt tcacagctcc gtctgctgaa 300 ttgaaccagt gtgatcacag caacccgagg ttgcaatatt tacaaggtct atctacagta 360 attgccaaga accaataaga atgggagaag gtgacgactg aaagtaaagg cggacacact 420 tatgataaat tatgatgcaa caatttggct catgcatata agaaaataca tattatatca 480 caacaaaggc cacacacctt tttatgcagt ttagttaaca ttactactta cagacaaccc 540 attctccacc ttcgctttgg acattcaagg accctatacg tcttcacatc cctgtctcct 600 gattccaaac cactggtttt cctccagtga cagcaaaacc acccggagct ttgacggttg 660 tggcgggcca tgggtaatca agaaaagggc catagcaggg acctcttctg taactgtgtt 720 tgttttaatg gccgcaaacc acaaccaaaa taatagtcaa caaacagaca aagaccagct 780 gggtgaaaat gcagccagct taacagttgg gaaaatgctt aaaatagaca tttgcagagc 840 taagtaagag gtgcttcatc tcagagctcc agggcataag ggacccagaa ctcctaaggg 900 atcatcctgt tgacaccagc ctaaaagaaa ggtgcttgat tagtcaactt cagttcttac 960 tcctggttca gaagctcttg cactggattt aggctagtgc atctatttta agcatggtga 1020 caatgagcac gcagacatta aggtgatgag agggatctat tactttgggt acagttaaac 1080 atgacatggg ttgaattaat cagccattgc acatagctgt gttctagctt gttttctccc 1140 tattcaggaa atgcttgcct ggaatcctga gctgacagca atgtctacag gttcactgga 1200 gtagcttaaa acatggagtg ctaggcacta gtggaggcta actcattcct gagaggaggt 1260 tggaggaagg gacagtggag gatatagtgc ctgccttgcc aggatggcac atacccagga 1320 gcaaagacca gtgactgcaa aaatgaaaag cttacatgaa gatatctgga tcccttagta 1380 tgcatttgga tgtctgagag caagcccagg tatgcaagga tatacagaca agagatctgc 1440 atacacaata aaatgatttg aaagtgaaat ggcagcagct cttccataca gatactcatt 1500 ccctaacaca tagtgcccag ggaaacagcc acgagcctgg agaatgcatg caaacaagtg 1560 gacttactgg gtcgagctac atagcaatct catgtaaaca cggcagcaca catccacatc 1620 accatgaaag caaggacaga caagccacgg taacctgctt tagatgggta tctcatcact 1680 tgctgtaggc aaactgtgct ggtgtgaaat atctgtatga aacaccactg tgttcagggc 1740 tgttagacag cgtcacttca ggtcagccag gcactggaag cccagtcttg cattagggca 1800 gtaaagttac cttggcacag aggcggcgcc gagctaacac tgcacagctc aggcggccag 1860 catggaacac ctcctggtgt ccctgccctg ctgctgctcc agctgtccct ggcctggctc 1920 tggttcctct gcacggcagt gccatgtgcc acagaggtgc cacctttgtt ttggagcagg 1980 gtgctctggg gagcatggtg atgctaattt gtgtcaatgc ccgctcagga gtatctgtag 2040 gtttgtggtc acagcagagc aaacactttt tagccagcag cctcactgcc taaccctgcc 2100 taatggccac gtcagtcccc tttctcctga aatgccttga tactggaaaa atactaaact 2160 ggacgaaaca ttctgtaact gtatgcccgt cctttcgcaa gaacccactg ctcttcttgt 2220 gcttttcact gagcgctatt tc 2242 // ID JV172843; SV 1; linear; mRNA; TSA; VRT; 1185 BP. XX AC JV172843; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15661.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-1185 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-1185 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; 0b513bd161441341f41bbca1e9bd5164. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..1185 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 1185 BP; 353 A; 216 C; 231 G; 385 T; 0 other; ctctcacaac ggaggagtca ggcgttctgt tggttgataa tgttcaaggg tgattccagt 60 catacctaca gagattaaaa atcacttttg tctccatact ctgtgcataa tgtaagctgc 120 atctgtctgt ttgagctgtc cagtgaatcc ttctgtttga ggtacacttg ccatttctgc 180 agcaagacac ctgccatgca gtgtaacttt ggacctgctc ctcatgtgct ggcattgcat 240 tgtgaacaaa tataatgcaa aaaaagcttc agaagagtct gcaaaacatt gttttcacct 300 cttgaaagtg acatggctaa catggcctgt ttgggaacac cactgtccaa gaattgcaga 360 gggcaaagct gagtcaacaa atccaaatgg gccattttag ctttgacagc tttcataaga 420 tcttcaaaat acttctgcct aactcccctc ctacacagag ataatgactc cttttcataa 480 aggactttga gagtctcata cagaagtttt cttacactga aatatttcct tgtcttgcaa 540 atttcttata tctctattgt ggaactgtca aaagaaggac atgcaagatt cttagatttt 600 atctgtagtt actgacaaaa attaacaata gcaatgtgaa attattacca aaaaaatgca 660 cttctttttt attccctatg agaattgtga tcttgtggtt gtatgaagaa cttttgagat 720 tcctgtgtct ttcattcaag ttttagacca actgatctca atggtcatac tttcggtgcc 780 aaatttgagg cagttggata attttctagg atgaatgtgt gaggtcactt ttgaggcagc 840 ctgatttgta ccaggaacag atcctctgga actcctttta agttctttgg acaaggctaa 900 gttttaaaaa cagaaatgag gttttctaaa caatgcttta taagaagtgt agaacaaaaa 960 ttatttctct ctgttgcctg attctccatg tgggtatcag aagggcacat agaacatttg 1020 agcacttgga aatgtgatgt ttctttatct cagtgctgct gttctgtaga atggcatggt 1080 gtgtttgttt tatgataaga agaaatcaca gtacctgata gtagtgtcac attggttgtg 1140 aaataataaa aatgtcatca gagtaactaa cgaatcaaaa aacta 1185 // ID JV172844; SV 1; linear; mRNA; TSA; VRT; 997 BP. XX AC JV172844; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15662.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-997 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-997 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; 75f88182a8c4456a701b2bd60faf7c33. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..997 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 997 BP; 300 A; 223 C; 171 G; 303 T; 0 other; tttggaggcc cagggctgta ggcagttggc ataacaccga acaagaaaag ccatttctta 60 ggctggggga aaaaagtttc ctttctcaaa taaaagccac agggggaaaa aatgagaaaa 120 atcccttctg ctttctcttt aaaaatcata aagcagcaat gtgcatatat gcaacttctc 180 aggcttggat ttcacactga attcgattac agcttccact agatctgagg agttttcagt 240 attgcaggga gttagcagca gcagcagcag caattcctat aaaaatgttc cagttttaac 300 aagcacataa attcaaatca aaatgtttcc tagcttctca aatacaaata tccatacgtt 360 cctccaggca agaggcatgc acccaaaaag tgctgcttaa attgaattaa ttcagaaatg 420 gattagaact gcaggttaaa gcaacaatac attaaaaagc aaggtatgaa ttcttcaaat 480 ttcttttttc tcttctaaaa tgcatttaca agtggcttat cttcgggtcc acttttcaga 540 aacttcatcc taatacagta gatgaaattt tgcaaaggtt cttcagcatc ttaggcgatc 600 caggaatccc acaccctggg atattaaagt ttcttcttta tactcgtgtc catcataaat 660 gcaggaattg aattcgcatc cgtactgtag ctccaggata tatgctctaa caggtttgca 720 ctgtggaatg tattaaaagc ctctgcaata caaacccttt tctcttttgc acccccctcc 780 tttctttttt ttttttttta attgtccgtt tacaactctg cagtgtcgct tggtattcta 840 atgcatcagt cagatagcac ggctaatcca cgcctagctt ttccaattaa aacatttctg 900 taatgccaaa caaaacagga cgtccatagc tacagcaagg ctgcctgctg gagtcctaat 960 tcctactatc tttgcttgct tctcagcagc tccctca 997 // ID JV172845; SV 1; linear; mRNA; TSA; VRT; 562 BP. XX AC JV172845; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15663.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-562 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-562 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; 3d9e13ddbe572c9862d78d3ebf5d64cc. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..562 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 562 BP; 157 A; 125 C; 101 G; 179 T; 0 other; gcccaacata ccaatcacag aattatttca gcagagaaat atctggtaat aacagagtcc 60 aggtttttcc tcagtgggtg cctcaagcac taacactcat ggttcagact ccaatcaatc 120 agactcattt acactaagtg gtgctgaggg ccaaggaact cccaccgaat caaacggatt 180 gcctcaaaaa tcctaccaca tctttaggtt tttagatgtg gacttatgaa agaatttagt 240 caatgagttt gagttcacag cttaaatgac atagttctat tttactggct ttatgaaggt 300 tttcactcct ttaacttttc ttttccccta aaggctgatg agtttaaaag aggaagattt 360 tgatgctctc cactgtacac ttgcatccaa gttccaaata ttagcaggta tgcttgttat 420 cctttttata tcttgggggc ttttttcatt ctttagcctt agaagcagac atgaatgaaa 480 acttgagtcg tgatcctttt tgttagcaac atggcaccac acaatccctc cttgatgttt 540 ctcacaggca gctcctccag gc 562 // ID JV172846; SV 1; linear; mRNA; TSA; VRT; 1302 BP. XX AC JV172846; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15664.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-1302 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-1302 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; c8022662c7295fdf1e08c4c6e634e796. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..1302 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 1302 BP; 311 A; 396 C; 366 G; 229 T; 0 other; ggcagtgcgc atgagttcgg ggcggtagct cggcaagccc gcggcgctgc tccgaccacc 60 tgcctgtcct ccaccggggc tcattccgcc ctcggcaggg agaggcgcgg acccaaagcc 120 gacatgaata aaacgagcag ccccacgtaa cacacccatg gcatctgtgc tgcgtcggga 180 tccataggtc aagaaggtgt gatgcctagg aatctcctgg tggatcctcc tgaaatggca 240 tctgaaacct ctccagagca cactcatggg agcatggaaa gggctggcac tgtggagaac 300 catggcagcc aagctaggtg caggaatctt gccttggatg atgaaagttt gaaatactta 360 actcatgaag aacaggatgt tctcatgttc tttgaggaaa ccatagatgc cttagaagat 420 gacttggagg agatggccct gcgtgacagt ggcatccact gtcagtcccc aaggtcaaca 480 gaggaaaatg tgtccagtca ttcagagact gaagatatca ttgacttggt gcagtcaacc 540 cctgagggca gtgaccatga gggcccttcc agcagagaca cagaaccagt gttggatgcg 600 cctgggagag ccgagagccc tcagccggct gtacctgctg accttcctcc acacccccct 660 gcaccgcccc cagcggtgcc tgagagcctt cctcttcctc ctccaccccc tgctccagtg 720 cagcacccaa agctgctccg ttccgtgccc actcctctca tcgtggccca gcagatgtcg 780 gagcagcagc agggggagag ccgggcgcgc ttccccggcg ccctcggtgc ggggaatccc 840 gacaggagga aaggcccggt ggccaacggg gagcattgcc cagcggccaa gcaccctcct 900 gcccccgccc ccaagctgca ccgcttcccc agcaacatca acataacaaa tgtcagcggc 960 aaggagttca gcgagaccat ttccaaggcg gcggtgaacg tgcaggagcg gcgggctcag 1020 gtgctggcca acatcaatgg gggagctctt ctggcagctg aactggagga gaggctgcac 1080 aaaaacgatt tcttgtcacg gaacagaagt tcttccctac gggatctctc ctctgagcaa 1140 actcgctacg aagccctgac caaactcggc ctagtcaagg gaaagccagc tcaggaccaa 1200 gtggaccatg cccccagcac tcagcagcct ggtgtgcagc ccaagcagcc agaggctgtt 1260 accaatggat accaaaacat caatgagatt ttaaaaagtg ag 1302 // ID JV172847; SV 1; linear; mRNA; TSA; VRT; 928 BP. XX AC JV172847; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15665.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-928 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-928 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; 3efdca1bb2e3dc4162df8d86050f9302. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..928 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 928 BP; 242 A; 220 C; 222 G; 244 T; 0 other; caaaccactc cttggtgcgc cggtgctggt acagttccag ggccacatca gcagcataag 60 gtggccactt gttatcaaag gtgcccagtg ccagcaggag aggaataata gtggagtcat 120 gagaagcgta gaggaagagc tttctggcct tttcagctgg atttgaggga tttactgctg 180 ctttaatgtt cttctccaaa gtattgagca ggaggccaat actcatctga agcatttctc 240 tggaacaagt gtctcccaga acgaaaagca tggagtcaac acatcggcgt tccaccgtcg 300 gctggaagtt cttcagcgca gggaagcttg gcatattgtg tgcctgctca gcagaaatgt 360 tatcgaggag gacaaaaaaa tccagagact catcatcatt aatgcacata ctcttcttaa 420 tttttgccaa gtcatcacag atgcctggct ggtgcatagc attctctgac ttattcctgg 480 tcatgtcttt caggcgccgg cagttctggt aattggggta gagtatttca gtgcacgctt 540 catcagtgac aataactgga acttcaagag aaactttgga acaaggatct tctttctgct 600 cttggtacag cccagctagc acgcagcgtg tggactccag attccggaca atattagtgg 660 aacggatgaa gacttcagca gacttaaata ttggtgaaag aaactggact tcttccatat 720 agtttctcct cagccgttgc cccagggtgt acatctgctt catccccaca caggtcagct 780 gtcctgcggc tgcaccaccc ttaaaaacag tcttacagta ttcctcatcc aagagtgagg 840 gaggttgagg tcctccattt aggtctgtca ccatgtactc aaacttagtc ctaggaggta 900 catccaaaaa gagtaggttg ccattcca 928 // ID JV172848; SV 1; linear; mRNA; TSA; VRT; 694 BP. XX AC JV172848; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15666.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-694 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-694 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; 139622d0049ecdf6aa365848066522b9. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..694 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 694 BP; 220 A; 124 C; 96 G; 254 T; 0 other; ttctgaatcg cttgaacttt ctgagtcact ggatgaggaa gatgacttgt gtctcttctt 60 ttcttctttc ttagctttag atcagaacag caaagacaca ttttaatatc aaacacttct 120 aaactaatct aagaaaaatc acccatcttt tatctgtctc tgtatcttgt atcctggtat 180 ggacaggacc attctctctc gtatctctta gattcttata atcgtgtcat gagattacct 240 catcaaaata cttaagggca aattgatatt ttggaaaaaa acattgtttc tccatagtac 300 aataaaggat atgtctagga aaacaagaca ttttcataat ttagacttat gaaactaaat 360 ctaaaatgta tactgtcaag cacttgcaga actgtgtaag ttttctgatg atattttata 420 caacataagc tacatacaaa gaagttgtta aaatgtattc atatgtgttt attaaaaaaa 480 ttctttagct tcacctgact tcatcaaatc acaaataaga gaaattttga ctaggacctc 540 ttctacaaaa ctggtaccaa actcccacct gtccttaaga aagttaatgt ggtatttttt 600 gttccacagt ttttcttgtg agctttataa gcttagctag tctgtaataa cctttctaaa 660 tactgggtta atactttgct ttcttccttt tttt 694 // ID JV172849; SV 1; linear; mRNA; TSA; VRT; 634 BP. XX AC JV172849; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15667.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-634 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-634 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; 972e4e342d700b1f5117ddfef5f339a5. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..634 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 634 BP; 166 A; 126 C; 129 G; 213 T; 0 other; aggttgtgtg gaagaattct caagttcagc agtgttgttt tctgagttag tctccaatgt 60 ttcgctggat atgttgctgt actgtttggt actgtcactt gagtacgctg atttaaagtc 120 ttgtctgacg ctgtcccatt cttgaagacc ttcaatgcta ctcaaagtgc ttgacaaaac 180 ttttgctgta gcatatgaac ttagatgaga acgaaaagga gaattttgag agttcaatcc 240 attgtctacg ctggaacatc tcataacttt acggttttcc atattcaaag gaatttgatt 300 gcaagagaca tcacttgcac ttccaaaagc atactgtttc cagccaatct tgcaggctcc 360 atcttgttgc catgggtgaa tatatgggtt gatatcactt gatctaaaat gcattgcatc 420 tttataatct tgcaaaaata aatcagtttc tggctggtat ccagcttctt ctccttcccc 480 ttcactacac tgagctacag aattgctctt tgaatggaca tttgcttctg cacacacaga 540 actgcgagct gtgggcagta aggatgatgg agattgacta gtacaatctt tcaaagactg 600 gctactttgg cttcttgctg ctaaattttg taag 634 // ID JV172850; SV 1; linear; mRNA; TSA; VRT; 1320 BP. XX AC JV172850; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15668.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-1320 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-1320 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; 532678443cf1e21980161d6f94769a17. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..1320 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 1320 BP; 408 A; 289 C; 283 G; 340 T; 0 other; ggcattccaa gcaacagtat attttatata actggttctt ttttttgttg tttttaccac 60 tttataaagc aatacaatga actgcaaaga atccgacatc tgtacaatgg gaagacaaca 120 gcggagtgac attcacacac ggacatggtg cgaccgaagc catccttaca cgcacgacaa 180 cattatgggc ataaagatac aaaatataat gtattttttt ttccatctat ataaatacac 240 agaaatgggc gagtctaaaa gtttgaaact gtttgttaac actgattagc aaataaatct 300 gtaacattcc caaagtaaca aagacaacaa caacaacaac aaaaaaaacc ccacgcataa 360 cacggcggca caggatccgc caacagaaac gtcatattgc ttcctttttt ctttcttttt 420 ttttcctttt taaggaaaag aaaaaaaaaa tagtaacccc aaaccaacct cgcaatttgc 480 aaaacaaacg aacaaaatga aacaagcccc tgcgggctcc tttgctgtct gatcatcctg 540 cctgctccaa tgggaagggt tgccttttgt tgatgctgtt gtctggggtt tttggggcaa 600 ctggtttctt tacctgcccg acctgctggg tggggattta ctttgcactt tggttcaggc 660 ggttcactga attcactgaa aaaatcaatg cccagaggct gggttgggtt ttttctccct 720 acctggtttg ttttccatgt gtaatttgac caggaggcag ccagcaaatg ttgcattcag 780 agcaacccca aactctgctc aaaaccatga gccctgctgt ctccaccggt gatgaggggc 840 tggtgaagac cacgcaatga tacatcccat caccagctga tgacatggat catctcccaa 900 aagagctccc aggggcagag ccagaggcag ccccactgaa tgggaacccc acattttgtg 960 cactgcaggt gccactgagc aggacagaca gcaaattacc tccccaggga gcatttccca 1020 atagacagca atatcgacag caaaggcagg acgggcttct ccaaagaaca aactgacaca 1080 aaaagggcac gtacaataaa tttacacaca caacaaaaaa aataatatat atctatctat 1140 atatatgtgg ggaaaagtgc gtttttaagg atatctttgg caagaatata tgcagttctt 1200 tgtgtaggaa ggagggatgt gtgtgtgtgt gtgtgtgtgt gtgtgtgtgt gtgtgtgagc 1260 gagagagaga taccatccgg ctgctgacaa cggcagtgtg attacaatag aaacatatgc 1320 // ID JV172851; SV 1; linear; mRNA; TSA; VRT; 2822 BP. XX AC JV172851; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15669.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-2822 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-2822 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; f01de0e0ac4c4ac19b682da1d705deb9. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..2822 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 2822 BP; 806 A; 606 C; 513 G; 897 T; 0 other; tcagttaaga agctaaatca aaaaggcccc gtaactttgc tttatttaca gatgcaatgg 60 ctgaattgaa ataattacag tcactcccag caccagcttc caattcaaag gattagtgca 120 ttccaaaatt tctctttcaa ctgttttcta gaggggatta aattgtccat aactacagct 180 atgtaggtaa tcccagccac ctacatgaat taccttagag aaaataaacg tgctgacaaa 240 aatatttata attaacaaaa tgacaaaatg agaaactcaa ccttcaggaa gaatggacag 300 aagtttggtt ttgtgctgca ctcattgctg actatgggag cagcagcagc agtgtgggag 360 aagagcaggt gtctctggtt cctctgtgag gagggctgta tgtccagctt tcatttcctc 420 ctccctttcc acacatctcc cgttattact tttttgtgaa atcattgggc agattttctg 480 aactgagaca gcatgcagct tatttcagag gggaagaaaa taactgcatc tgcaggcagg 540 ctgacttgca ttatctgaat aaagacagat ctgctcctct gagttttaca gtttacaagt 600 ggatgaagat cttgtggcaa ctgagaaact actgtaagat taacagctcg gatgcacgta 660 tatttgtctg ttcttacata ctttcaaaac ccaatggaag gaagaagtat ctgcgattca 720 ggtagatcca gaaggatttt ttttcttaca caataaggta aattacttag cacattccag 780 gttaaaaaaa ttacagtaaa cattcagtaa ctggaatgca tataatatac aagtaccatt 840 acatttacaa agctgttcat gacaattttt ctttctatat taagcataaa aaagttacaa 900 gctaattcac aataacctta gttacaatgt tattaaaata cattgatgtt aatcataaaa 960 atattttact atttacatgt atattgtata aaccttaacg ataagaatat gcctatttta 1020 ggatgcctta aatgaatatt taggcagatt ggcccatttt atagtgcagt atccctgttt 1080 tggtcttcac accatgaaac tgtaccagat tcacagtatc tttgctagtg ctttgctaaa 1140 aggcttaatc tttttattat ttaagaagca ttaattcatt cattacaaag agtcagtttt 1200 atttccactt tgtttcttat taaatcctac ccccagtagt tcaggacact ctgcctggcc 1260 ttgagcaatt tggttgcatt tccacataag gctgtaatta atttcatcag ttatcacact 1320 gtcttgcttg tagtctggat gctgcgcgat gaattccctc atccatcgag ccactgtcat 1380 taattctcca gaggctctct tttttattag cttcaggtag tttaggatgc tgcatcttgt 1440 atccacatcc acttccatgt tttcaagata ggaattcaaa attgggatca aacctggaaa 1500 gactccttcc ttcccattga taattgtgtc aatgctcatt aaggtgtact cttctgcgtc 1560 agtgcttgtc ccattctgtg cagagccaca tccatccaaa acaacatttc cacctttgca 1620 gatatctttt ctgaagtaaa acattccctg tcgtacagca tctcttttct gggccacctt 1680 catgttttca tccaccttgg acaaaggaat gagaaaatcc agtttatacg acagaatcac 1740 tctggttagc aataccacaa acacaacata agcagagttt tcaaagtctg ttaactggac 1800 ctccataggt ctgaattcca ctctccatcc aatatctgaa tttggaggtg gtggcttaaa 1860 cctcattgtc tgccagtttg tagactgaat attctcaaaa tggtcggatt catttgcatc 1920 atctagatgt attttctcct caaacaaagt caatgggtct cgaatgaaca agtgtgcaat 1980 atgctgtgcc aaaaggtgat caataccttc ctttattagg tgctcgtaga tatctttgtc 2040 tattgtcaaa tcaatgtcat tgtatttctc accacattca gatagataac tgtctatgga 2100 atcatatctg gatttactga ttctataatg gttgttcttc agtggctcca gcccccgctc 2160 ctcgcgcgtc cggtcatcca cagaggcgga gatcacgccc cagcgacagt caatgtcaga 2220 cacgtagcct ctgtagaatg gagacgcagc actcagcgcc atcacaatgg gacaaatcgt 2280 agccagctga tcatagagat accttgcttc agaaatgctg caagcctgaa atgttacctg 2340 gaggcagcag tttcccattc caaaacccat ggcatccata tatatgtagt ctggcttagc 2400 tgcctttgct gcttctccat catcataagg aaatgtttca atgaaaggtg atggtgtgtt 2460 cttatcttta aatattggta catttatcac aaccttctct cctcttcggt gtcgaatgtt 2520 tctggtcagt gtactaaatc taggatgttt attgatggct tcatctggaa aaaagagcga 2580 ttttgaagct cctccttcta ctggtgttgg catacaatcc ggcagtgtaa acccaggaca 2640 gcctaacctt ggaaatgatg tcaccgtgca aacagcctca ttttctttaa gtacagaagc 2700 agcctcttgc cgtcttttcc tcatgttgtc ttgcacagtg ttgaattcag acatggttcc 2760 cccatatggc tgtccaggtg ttccttcaat catgtaactt ccatattctg gtctccagag 2820 tg 2822 // ID JV172852; SV 1; linear; mRNA; TSA; VRT; 670 BP. XX AC JV172852; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15670.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-670 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-670 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; 30ce550513b9f828dd431f4489960410. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..670 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 670 BP; 175 A; 212 C; 153 G; 130 T; 0 other; agaggacctg agagctgcag gaccacaaga tgccaaatct ccctcagcct ctcagctctg 60 gagaggctgg tggagcctcc aaacagaggg cggctgccag gctggaagag aaaatcaccc 120 aaccacttcc ccagccacag agactccagc tggaacaggg cagggtttca ccagggaagg 180 aatattggag aaaaagccaa gaaagatcgg cagcttttgc ttttaagaga ttgcctttcc 240 ctcccacatc tgctcccaca cctgcaccca gcctggagtt gggctgtgct gaagggctcc 300 aggatttcac acccattgct ggggctggtg ctgcactcca gggatgctct ggcaccagaa 360 aagggccagg agggatcctc cactctgtgc ctgctcatac acagggttta caggacatcc 420 aacaggaatt tatccaccac tgcaacaaga atttatccac cacagcaaag ggaaattacc 480 cctcacggca aaatgctcag aaacaccatg agcaaactgg ggaaacgcac ccaaaccaca 540 tcctgtgccc cttgctccac attagcagct gcttccctct ggtctgaatc ctctaaatga 600 ctcagtctgc ccttgctgct gattccccag ctcccaaacc ccttttcttc ccccaaaatc 660 cccctggcag 670 // ID JV172853; SV 1; linear; mRNA; TSA; VRT; 691 BP. XX AC JV172853; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15671.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-691 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-691 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; a5ce35630a87e596683b9feb3a8b5004. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..691 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 691 BP; 205 A; 134 C; 142 G; 210 T; 0 other; aagtgataga ttttggtcca ttgataaaag acacaggaag gattaagatt gttgcatttc 60 acaattgata ttttagaaca ccatttttac ttgttttttt taattagaaa atttgcataa 120 gaagcaataa ataatctgct tgagagttaa accactttgc aagagcctcg atcataaatg 180 ctgtaggaaa ggagcaaata ccttcagatg cttgaagctg cattacacag aacctaatgc 240 caggatatct tcctatctag cagtgctctg atcacaccca tcagcctcat cccacaagca 300 gcacagttgt cagcattata gctcttaaaa ctcttctgat gcgcagatct ggcattcatg 360 gtgaccttac aaactctttt cacctgtttt gtaatcattt tagcagaagg tctgaaaaat 420 gcattggagt ttttttagag aagtagagat accttcagaa ctgttcagct ggggtggtgc 480 atgatctaaa atctcagagg aaaagtgatt attatttatt ctccaaaagc acttaacacc 540 cagtcaatgg acaggccagt cagtgcagtg gggacaatgt ttgggctttc ccatttgtac 600 tgctggaatc catgagcccc tgggacttgc ctgagcatgg cactcgggag gagctgggta 660 accttagata atatatttgt tctacttgtt g 691 // ID JV172854; SV 1; linear; mRNA; TSA; VRT; 492 BP. XX AC JV172854; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15672.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-492 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-492 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; 494e03db9ee96d2db36f25c4ec6c3728. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..492 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 492 BP; 123 A; 85 C; 162 G; 122 T; 0 other; tggtggaggg ccttgagggg aagctgtgtg aggagtgggt gaggtcactt gcctgttcag 60 cctggaggag aggagtctga gaggaaaact cattgcagtc tacaacttcc tcatggaggg 120 aagaggaggg acaggcactg acatcttctc tgtggtgatc agtgacagga cccgagggaa 180 tggccagaag tgtcaaggcg aggtttaggt tggatattag aaaaaagttc ttcgcttaga 240 gagtggttgg gcactggaag gagctcccca gggaagtggt cacagcacca ggcctgacag 300 agctcaagga gtgttggatc aaagcattca gagacatggt gtgactctcg gggatagtgc 360 tgtgcaggga ttctacagtc ttgaattcaa ctgcccttgt gggtcccttg taactcaggt 420 tattctgtga ttctgtgatg tttggatttt agaatgagta aagcatttgg gaacctgaag 480 caagcttagt aa 492 // ID JV172855; SV 1; linear; mRNA; TSA; VRT; 475 BP. XX AC JV172855; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15673.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-475 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-475 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; 48f7eadbc76544c5c9f26d8fef462761. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..475 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 475 BP; 171 A; 82 C; 106 G; 116 T; 0 other; agtttgaaca ctcatactga ggatatgttt ttccatacag ttggaaggct gcctgaaagg 60 actgaaacac tgggatacat tatggaatca caggcatcag aggtcactta aatgagagct 120 ggtctgacag ttacagttag cacctgaagt ctcactaaag ggaacagagc taccagtaca 180 cctcacatac aatcactgga gatatgtaaa tgagataagg aagatattca ttaactagtt 240 taggccattc catttggaat gtttttgatt ttagagagtc aaataaacac aacctccaaa 300 gaaacctata ggcataggta aaggaaaaag ccttggttct cacgtgttga tctacactga 360 aactgagtag aaaaatggag ctggcagggc tgaatgtcag agaccatgat accaaaagac 420 tgaatggcac agaaatatca aagcaggaat taaaactgag ataggattga gtctt 475 // ID JV172856; SV 1; linear; mRNA; TSA; VRT; 628 BP. XX AC JV172856; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15674.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-628 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-628 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; daaf508c252cbc4aed2797dc09acf5a6. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..628 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 628 BP; 198 A; 144 C; 95 G; 191 T; 0 other; ccataaccag aactgtagac ttactggtaa cataatctgt attttctgcc ttccatactg 60 agctggaggc agtaaaagcc aaacctccca ctaccaccag ctcagtctgt acttgcactg 120 tatatagctg accttcccct gtccttcaaa aacattaaaa ttcaaatcaa gttttaccat 180 tagagtatgc ccacagtgaa ttccactcag taactcttac ccatctcaca aagtggagta 240 attatcaaaa ctatgtgaaa actaattaac ttctattaat atagagattt gtgaaaaaaa 300 aataagaaca taaaaaacca agatccaaga caagattcaa cagtaactaa ccagatgtta 360 attaagccct ttaaatcagc attttgtttt gtgcctgcac aaccaataca caggcaacat 420 ccttacacaa tctgtcttct agctgggatc ctccataagc actgacagcc ttgactgaag 480 atagtccttg cttctgtcac actgaatgat cttgctgtta tctaatttta ttttattgat 540 ttcttcttct tggcttgctt tttcgacatg gcacctagag ctgaaatgct ctctgatgtc 600 tgaggcaaga gtagttttcc agactgtg 628 // ID JV172857; SV 1; linear; mRNA; TSA; VRT; 899 BP. XX AC JV172857; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15675.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-899 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-899 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; 7831e6c0978f51cd58598ec6a1b19d51. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..899 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 899 BP; 244 A; 250 C; 257 G; 148 T; 0 other; gcagaacaga atcactttaa tgagaaaaaa agcattcaca gaaaaacatt gcagagtatg 60 aagaacatca gatcacaggc aactccttcc ggggttgctc ttctccagtt ggacagtgaa 120 gttgcatttt agaagaagat aaactaattt ttcatcccac atattaggca cacacagtca 180 agaaaaaagc ccagaagaaa acaagtagaa ggtgaacgaa tcaaggagga aatgtgtgct 240 tccacctcca cttgagtgcg gtggccatgg tcgcaacacc tcctctgggg ccaggattgt 300 atctctccgt ttttggcaat tccttacttc gagatatttc ctcagggttt agcaggagcc 360 ccagtagcca cggccatagc ggccgtacca ggaggagtag gggctgcaat agccagagcc 420 aaagagtctg ccagagccat acagaccccg gtagccccca caggacccca gacccccata 480 gcccccacag acccccgtag cccagggatc cataaccccc atatccatac agacccccgt 540 agcccaggga gccgtaaccc ccatatccat agagaccccc atagcccagg gatccataac 600 ccccatagcc cagggaggtg ccagaggctg caaggacggg agctccagca gatcccacca 660 cggaatcctg cgggaaggag ctgaggatgg ggtccgggga aggtgaccac cacggcggga 720 ggctggatca cggtggtgga gtcgggggca ctggcggacg cacggctcgt tcccgctgtc 780 agccaggggc tggggccgga gggcgccgca ggcagcggag gggtacaggt cgtagcagga 840 catcttgtag gggttggagg tcaacacagg cgaagtctcc aagaagtcaa gggaagcgt 899 // ID JV172858; SV 1; linear; mRNA; TSA; VRT; 884 BP. XX AC JV172858; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15676.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-884 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-884 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; 7ae3ca30c41dce6c60025b15b6047d80. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..884 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 884 BP; 251 A; 145 C; 191 G; 297 T; 0 other; tggtgcatga cagcaaaacc aatatgtgcc agtgatttac ctgctgtgtg ttaccaggta 60 cacagtgcat gggtgaaaac agtaatgctt ttgggggaag aaactacata tcttgcaatg 120 tttgtttcag gagcaagcac tagatgtttg caccagaaat gacatgaaaa gcttgatgtc 180 gactcgtaaa aactgagaaa tgcagagttg taacttaaag gtcctttttg ccttggacat 240 tatagcatct gaaaataaaa tgaaaataaa tgaaaatgaa ataaaagaaa tgtgaatcac 300 ttgcttatga ggaagactga atgcacatag cagaagctgt gcaaattaca gggtccatct 360 ttgatttctt tgctcatttg cagtatttca aatgatggag cagtgtgatt ttgcttatgc 420 aggaagtttt cagcagctat tattccactg atgtttcttg gatttttttt tctttttgtt 480 gtgtttcata gtaaagaatg gtgctggact tgtgacttga gattttctga ttgccttgac 540 tttttcttat tgccagtcct tcccctggtt gggtacctga ctgtgagcac tgcattaaaa 600 cattttggta gttcactgac tgctgtagtt ctgtgatgag tgttcctgac tggactggaa 660 gcagatttcc ttggaaatat aatatgttga aggcagtttt agacatggct tcctgttttc 720 tagcagtatt ttgcaaagag actcaagttt gttagagacc tacattgatt ttaaagaatc 780 ctaactggct ccttgccact ttaattaatt aattagaatg agttccacaa gcagaggttt 840 tagttatgag tcagacagcc attatgatcc atgactacct gctc 884 // ID JV172859; SV 1; linear; mRNA; TSA; VRT; 523 BP. XX AC JV172859; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15677.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-523 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-523 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; 20bdae817c955b8cf91eb6ac6a56c419. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..523 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 523 BP; 166 A; 117 C; 117 G; 123 T; 0 other; attacaccaa gcccacttcc ctggaaatta ccgctgttct tggcatttga tgagagaaag 60 agcctaagac tgaccaggtc agcttctaac agtaagtaaa tccaagcaga agatgctgtt 120 aatctccaca gtacaaagac aactgaagtt ttacttccct tccactctat cacattattt 180 ttagcaactc ttgaatcaga ctagctggag tgaactggtg gtggggaaga gaatcactgg 240 tttcatctga gccctagaaa tgcttgatgg ggtcaaagtc acagaaatga aaaataacga 300 agataatagt ctgtatcttg agggtgatct ttgtctgcca atgtccattt cttctctgaa 360 aaatcagaaa attccacttt acagatgagg gtgaacaatt gagcccagcc agctaacagc 420 aagtgggaat gagagaaagg cagcagtggg atgtggaaag tctcctcaca gccagtgctg 480 ggaacagcac ccacgacaga cctggagcaa caccgacccc aca 523 // ID JV172860; SV 1; linear; mRNA; TSA; VRT; 1108 BP. XX AC JV172860; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15678.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-1108 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-1108 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; 63a18f2318277eac266acf6326bd7f26. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..1108 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 1108 BP; 266 A; 283 C; 195 G; 364 T; 0 other; tattacttac aagagagtgg caaaacaaga cagtgcagtt taaaaacatt aatataaata 60 ctaggcattt gatgccttgt gttctggggg gttttatgtt tagatttaat aaggtgccca 120 caaaaattct tcaagtaaca acaggtattc tattcctgag gaaaacagga tggactacat 180 gtatcccatg ttgctttttg tttcccatct tttcttggct tcaaatcccc aagcaagctt 240 ctttttcttt tgagcttctt gggcagcttc tgcttcttgc ttggctttta caaagttgcg 300 gcaagcggca gctttggcaa ttttcacacc aagctcacga gtggccaacc tgtcactcag 360 ctcctcagcc ttggcaatgt caccttcagc cacacacttc tctatgctca gttcaaggcc 420 agacttttgt ggagccctgc tgtccacagg tgattcaaat ctatcattga ttccaaagta 480 ttgtgtaagt tctttccatt tgtcttcatt ttccaactgc tgactactct gagccacttc 540 atcgctcttg ctctgctttg cttttcggcg gcgctttctt ttccggcatc tgttttcttc 600 tttcacttgc atcttcattt cacggtgttt cttctgaagc tccacaaatt tattccagat 660 atttacagaa actccaggag ggcacgtttg gaattcacct tcttcatctg tcactggtac 720 aagagggtca ctgctggcat tactttcctg tccagtcccc tgaatttttt cagtatcttc 780 ttttgcctcc tgctttaaac aggaatcagg tgattcgtct ccatcatcag aactcagatc 840 aacatcactt tcattcagcc ctggaggtaa gagcccactc cacatcttcc agtttatata 900 aagtccaaac tatttcaagt cactgcaaag acaccaggtt acccatccca acacaaaaac 960 aactatttca gaaagaagaa gacaacttga ttacagaggc tgagactttt ttttccccac 1020 tcctcgtcct ttaaagttgt gcccctatgc gtttgcttac agctcctttt agtttagggg 1080 cgacactgca gcaaacgcct ccgtgcct 1108 // ID JV172861; SV 1; linear; mRNA; TSA; VRT; 720 BP. XX AC JV172861; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15679.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-720 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-720 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; b1aefc358edd98d476bf457bf6efbd6e. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..720 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 720 BP; 161 A; 164 C; 178 G; 217 T; 0 other; aaatgagcct tctgtcactg taatcctcgt ggatggcagt gtgtaatgac ttcctggaga 60 aattcagccc tgctgagcaa tacttgcagc aggtgaatgg tccctgaagg gtagctgcac 120 tcagttgcag ttgccctttg gttctcacgg atgctgtggt tgtcattcca gacaaagtca 180 tttcagggct gctctgaagg tttgcttgct gctgtggtgc tctagcatgc atttctgtaa 240 tgtatatttc agggagtggc tctgctgccc ataaaggttg ggtcaagctt gttcatcttc 300 agcattgagg gagaggccaa gctgtgtcac ctgcaaggtg tccttatagg aaagggtgag 360 ttgtggtgac ctgggagcac gccttcacca ccaggtcaca gaccaactcc agtaaagcat 420 attgagtaaa atttaagctt caagaaaggc agtgaccttc cagggagcac aaagcactga 480 tcctttcagc agggtcctct catgacaaca ggctttgcag ctggcttgca atttacagtg 540 gaattaagat atgtaaattc tttgaaccat tccatgggta tctgtggtgt agttggagct 600 ttgttattac ctgattggag ctactccatt ttctctcaga aggagagtct cacttgccca 660 taggatttct cttttctctc ctgccctccc ttctccttat tcttcctttg gcactgcaga 720 // ID JV172862; SV 1; linear; mRNA; TSA; VRT; 630 BP. XX AC JV172862; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15680.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-630 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-630 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; e6f29766aeefe6e669df01acf03bbf7e. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..630 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 630 BP; 222 A; 95 C; 91 G; 222 T; 0 other; aaaactacaa cgtttgcctt tttaaaaata actctaacat agtcatcctg tcaaaaatat 60 taaaaacata tgattttaaa aatatatata atgacttaat ttgtacattc attctttttt 120 ctcttatatt ttgtttcttc ccttttgcac ataaaaatat catctccagc aactggagat 180 ttaaaatttt aaactttaat tagagaacaa aaattactgt aaatgtgtat agaaaaaaga 240 tgtttgctga aaatgaaatg gatgatttgt agacaaacat ttttactaaa gcagtttatc 300 tttttggcat caaagaaatg ctggaagcca agaagttgtt tttgttttgt tttaaattat 360 tattaaaggt ttattctcat catgcaattt gaagggcttt tattacaatg catagtgttt 420 gcaccaagag caaggtattt tctcttccat gcacacacta aaacaagagt gaaatgtgga 480 cactgaattc cctccttact ggaataacca agcagctgca acaagcaggg ccaagatcca 540 agactaggga atgcagaaat gcacctttgc tgaagttgtg caatagtttg catatctatt 600 ttgaaaaact aatttttttt ttttcaaaat 630 // ID JV172863; SV 1; linear; mRNA; TSA; VRT; 1610 BP. XX AC JV172863; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15681.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-1610 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-1610 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; 49bc1f760e5b25b8624b43e8a53b9f38. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..1610 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 1610 BP; 404 A; 351 C; 362 G; 493 T; 0 other; ataccattca gaacattgac ttttaacaat tataaaacat tataggtgtt cttcattaac 60 aattgtgaac aaagtctgca aaaagagctt tcgaattagc aaatgtttct actatggagg 120 aaagataata tttgacagga atgcaaagta accaaaattg aataccacta gactatttgt 180 atggtcgtag aaacctggaa actttcgatc gcagtagctt tataaatgat cttggaaaca 240 tttcttttga ctcttgtgct gtgtacttga aatagttttg agggtgtgcc agtacatcaa 300 agagagcttt aatcagtttc ttgtccttta ggatttcttg atggttttct gatgcatata 360 atcgcccatc tcgaacaatg tcttctatta gttgttggta atcctcatca taagtcacat 420 agggaacctg aaatcctttg ccactgtttc cttcatttga cttgaactga atccagagtt 480 tccttgatct tgaggtaaat gcaataggtc tctcataggt ctgacatgtt tcatacgtag 540 taattgaagt aggagaagca ctttttctca ttactaaaac atcgccacat tcatcttcaa 600 ttgggagaaa tatctcaggt actacgatga gtattcttct ctttgggggt ggatttatat 660 tccaaatgca ttccacatta gctgggtagt ctccaggata gttgggtgat tcaatgtagc 720 cagtgtagtc ccccagctct cctccacagt gctggttttt gcaatgtgtg acattggtgg 780 agccatcaaa atctgtactg gtgttgccag ggcaggtgat gcagtagttc tgaccaaact 840 caggctggta tgttcccaca gggcaccgga tacatctgtg tgttgtggag ttgtagtagt 900 gtccaggaga acagtgaact ttggtttcac agtcttgaaa ggaaacagca ccttcgtatt 960 tggtcacaag cccaccgcca cagggaaagc agagggtcct tcctggttca ggctgatacg 1020 taccaagagg acagactgta caaggtttaa aaccatctga agagtagtgc ccaggagaac 1080 actgccctcc acattccgag acgttgcggg cgcccgccac tccctggcca tcgttgctgg 1140 ggcaaggctc acaggtgagc tggccttctg tgtcctggta ggttcctggc gagcacggga 1200 cgcactgctt gtgttctccg ctatagaagg tgcccgtgct gcaggtaaca cattttccat 1260 cctgcagtac ttgccctgta ctgcacgctt catgcccttc agtagcttta gctggcttct 1320 gagccacttc atattctgtc ccagaaaact gaatgtaaaa ttgctgttta ttaatagatt 1380 tcctcaatgt tttgattgca gtttgcagct tctgctccat ccttttccga acacagtcaa 1440 tgttacaggt gtctgagact tcttcagact tcatctccac ttcaaactct gcagtgatat 1500 gggacacttc ttttgatggc gacttgcggc ctcggcgttt tttcttggag gaatcgcact 1560 tgaggttcac aaaggtcacc tggcagttgt ctgtgcaggg gaactgacct 1610 // ID JV172864; SV 1; linear; mRNA; TSA; VRT; 621 BP. XX AC JV172864; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15682.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-621 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-621 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; ab75fe9d9c4350a16284cc93e9da5866. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..621 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 621 BP; 158 A; 133 C; 207 G; 123 T; 0 other; acttttggaa atcaaatttt attgttttgg aggctgtcag agggatgaaa agcagcagga 60 atcattccca gcttcatgga aagcaacctg agctgggtct tgcttgccga gcaaattaaa 120 ccaaattaga gcaaaaacca ggaacccaat tctaatcaca gatgaggaat ttgaggatca 180 aattaaaaat aggaataaag aaccatcgat tgaagcttca ggcatggaga acatccaagg 240 caggagccat ccagtgtgcc ctcagtactt ggggtagcac gatggcagct tgcagatgtt 300 cttggtgacc tgagggcaga ctggggggca gtaacgctgc attggggggc agcagggctg 360 cactgggggg cagtaacgct gcactggggg gcagcagggc tgcaccgggg ggcagcaggg 420 catcacgtag ctgaacttct gcacaggctg cctctggatg gtgtagtggc acgaggcccc 480 cgagtcgtgg caggaggagc gggactcatg gcaggaggtc tcgtggctgt ggcaggagcc 540 gcgggaacac atcgtcctgg agttttggca gagccttcca gcagtgggga tggagctgtt 600 ttggagcaga gcagcgagtc c 621 // ID JV172865; SV 1; linear; mRNA; TSA; VRT; 700 BP. XX AC JV172865; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15683.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-700 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-700 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; 81dbb42c8cf0ef2230aa7454f9e6a255. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..700 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 700 BP; 243 A; 128 C; 91 G; 238 T; 0 other; tatttatgaa tgttccttta ggaagaagtt cataattttc aaactgtcct tccagtggac 60 agatgcatat gtcacaaatg cttcgttgcc agcctttgca cagactgctg cagtcttggg 120 acttattcac aaaaatcttt attattaatc tgacttattc acaaaaatct ttatctcact 180 cacttactca caaaaacctt tgtcagcata tagcaagatt aaaaaattgg gttgcctaaa 240 agcaatacct aaattataac ttttattatt aataaagtga caaataaaag aatatcttga 300 tttccataaa aaattaagca tctaattgga gcgtttgact agcttaaatt cagaagatag 360 accaacacca acatgagctc taattctccg cttacttcaa actaaacaag gattctacca 420 agattcaatg aaacatttta ttttaagtta tggaaaatgt aggcgtgagt atctggtctc 480 aactttctgt tacattattt cttggatcag actatgactc cattatgtct agtcatgatt 540 cttcctataa atatcacagt aatttttctt ttaatgactt ctattaataa actccatgca 600 agaactagta aaaggcaaaa ggctttaatt aagttatatt tgagatttct ccaacatcct 660 ctctgactat gaaaaaaatg acatatctta aacttgacct 700 // ID JV172866; SV 1; linear; mRNA; TSA; VRT; 1108 BP. XX AC JV172866; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15684.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-1108 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-1108 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; 4ee26dde8fcae045e6cc491ffc34794a. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..1108 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 1108 BP; 291 A; 259 C; 238 G; 320 T; 0 other; aaaaaaagat tccacctcat cttctactag gtagaacata caaaattgtg gaggggctac 60 cagtaaggcc aagaaacttg ccttctaact gtggctttcc ccaaaaacaa cagcacacaa 120 ctgatatggt tctcaactgc tgcagaaaac aagcagtctg gcttttcatt tcttttctat 180 ttaggaaggc tgtgaactgc agcaaagaaa ctgaaggtat ttgcagacgc aagaactcaa 240 cctggatgat tccatccact tttggaaggt tgtctttgca accctgaggg cataaagctt 300 acattgtgta tacagtagat aaagcttaca cagtatacaa accctcagta caggctttct 360 ctctcttgca agggaaactt ccaatgtatc agtggtagct agcatttaac acctacagaa 420 taacaacttt gacctagaaa tcattctggt aagttctgtt ccctctcttg ggccattcct 480 cctccaccca tttcagcagc actttcacaa catcaattct cttataaaat ttacagagat 540 caatcagctg ctccacagtc cggtcactat tccgtagcaa gaattccaag gtgggacttt 600 ggggcttttg ttcaaggaaa cacaattcat cataagtcat cccccacttg cttgctaaat 660 ttctccagtt tttcactgtt ggatggcagg gatccagctt tagcctcact gtgtacaaca 720 agtcctcatc attgagcatg tcactgatgg ttggcgcacg gaataagcac aaggagcagg 780 tgacattttc cttgcaggtt ttcttgagat ccgaaagcga ttcatcagta tggctctgtg 840 tgtctttgtc ttctggctgt tgtatgaggc cagaatctga cgtaagggtc ttgatgttca 900 cagaagcaat ttccaaagta acttgatctg ttaggtattc ctcatcttta ggtactcctg 960 tgtcttggac aggatatttt tctgtcattg ttaaggaaag agtgcttgga tctgtatcct 1020 ccactggctc tttagctgca tgatctgggg gcagcgggtc ctgcggagcg gccatggggc 1080 gctgcgctcc cgcggcgagg aacgcgac 1108 // ID JV172867; SV 1; linear; mRNA; TSA; VRT; 1200 BP. XX AC JV172867; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15685.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-1200 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-1200 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; f68764339e5eb06d249193210e6190b4. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..1200 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 1200 BP; 278 A; 233 C; 242 G; 447 T; 0 other; ccttttggtt tctcagactg agctgaaaga atattttttg taaggatctt cagtttttct 60 tctctctgat taaacagtct ccagtacatt tcacgccaag actcatattc cagaaggctc 120 tcatttttaa agtctctttg gcagtgtttc ttccacaagt ggtcagtctc ttttataaac 180 atactcaata ttgttgtgaa gtacacggac acactgctca tacagtgtaa gcatcttgga 240 aaggcagact gccttggagc cagagtaaac ttgcattttg gagttcagtc tctgccctgt 300 gaattgaact atctcattga cttgctgggg tgcttctaca gcaggtactg tgaaagctgt 360 aaagtctgca gcatatgggg gagatgattc tgagatgcct ggcagagttt taggtagtgg 420 agtattaaga agctcttggg agggatgcca ctttggcctt ttttacttgg agtttctgat 480 tgatcattct cacatttttt tacatcttca actccctctt ttgcctgaga aagttttgaa 540 gttttttgta gtaatgagct gttctcttta ctgcactttt ttggccgtgc acctgtagaa 600 caagcttttc tctttctttt gttggtaacc tcatcgtaag taagataaga ttcaaaagac 660 atagtagggg gttcaaattc ctcatcacta gatgatttgg cttggtcttt catgacaaga 720 ttttgttttg gtttcttcac acgtttacga tttttctgtt tggaagcatc cttactagga 780 ttttctttca ggcacaataa gccttcattg gctgcagagg aatgctgctt ttttgaaatt 840 ttctttctct ctgtggaggt gctgcctttg aactcacttt ctttagcctg agaattggta 900 ccctgggaag catgcttaga accactgctg ttacatactt tatcatcaca ttcttttgga 960 gactcagaat ttgtactttg atgggtcttt tcattacaaa tatgctcctt attcagcttt 1020 gaactaatgg gagcactgct ggaacttgta aaggctggga cagatgtttc aggcttctct 1080 gagggcttaa tctcctggga aacagaagat ttcatctcac agtttttctt tttcattatt 1140 ttttcttccc ctgtgatcac ttttactttc tggagaaata agctttttcc actgttttaa 1200 // ID JV172868; SV 1; linear; mRNA; TSA; VRT; 1210 BP. XX AC JV172868; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15686.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-1210 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-1210 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; 22271773f6846cfdfdbb6b51c94086d9. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..1210 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 1210 BP; 362 A; 280 C; 223 G; 345 T; 0 other; gtttatcctc tgtttatctt ctgtttatct tctgctagag ctagggtaca aaagttctta 60 acaattatga agggtttgtg ccccactcat aaaaagaagt gagatattct ctggatgtct 120 tttggaattt acaggaccca tgttctctac ttaacagtag gacctggctt agagagacat 180 tctagaatct aatgcaacct aaaataacag caaaacctgc ctgcatgaat tgcagagctg 240 aagtactatc agtggcttca ccactactcc caatatttga tacaaagccc aatgctttta 300 gcaagttaaa ggtccaagca tttgatgatg gaaggagaaa ggagccttga gcattgccag 360 ggttgggcat ccacagcctc catgggcagt gtgttgcagt gtcttaccat cctcaaactg 420 caacatttcc tcctaatatt taacctaaat ttcccttctt tcagttttgt gcccattcct 480 ccttttcctc tcactgccat tcctgatgaa gggttgctct ccagtttccc tgtacacccc 540 cttcagatat tggaaagttg ctgtgagggc tccactcagc cttctcttct ccagcccaac 600 tttctcagcc tttgttaggg agatgctcca ctgcttttac caactttggt gcctctctgg 660 acttgctcca gcagttccct gtccttgtat tggggacacc agaactgtgc acagcacccc 720 caagtggggt ctcaccacag cagagtagag gaggagaatc aaaagatttc agagactacc 780 tgaatttctg tactgcattg tagcacactt gtctgattaa atttacagga aaaaatagtt 840 ttaaaaaatg aacctttact gtgtgaaacc agaattatta acatgatttt aacaaacagg 900 aactcctagc caaacccttc acctagcaat tcacaatttc atgctgttaa tatattacca 960 attacataga taaaactata aaattactaa tgaatattgc acatggcacc cagaggagtg 1020 gggtgacaaa agtgagagca catcacagag taatgtgagt tatctgctaa gcctggcaca 1080 ataaaatgtg cactaacaca gccaagtgtc aggtcattca ccccaacaaa gcacatacag 1140 aaaactttgt atatattggt gaacatgaca aaaaacacag ttattttaca aaagcaactg 1200 cctgtgaaca 1210 // ID JV172869; SV 1; linear; mRNA; TSA; VRT; 206 BP. XX AC JV172869; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15687.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-206 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-206 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; 550449a663e85c16b52b1d260d5722ab. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..206 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 206 BP; 74 A; 30 C; 53 G; 49 T; 0 other; agttaagtaa ctttaagaaa tactaataat agttaaaacg ttaaaacata caggggagtc 60 caaaacaaaa gaaaaaataa aaaaattaag ccagttgttc aggcagcgtg ttggactttc 120 tggaattacg gtttctggca ttgaagagga gggaggggat gggatggagc tcccacctgg 180 aggtgcattg atctccacag ggatct 206 // ID JV172870; SV 1; linear; mRNA; TSA; VRT; 658 BP. XX AC JV172870; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15688.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-658 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-658 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; c012fc1d9b4d0097be1c6817aafada39. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..658 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 658 BP; 214 A; 139 C; 132 G; 173 T; 0 other; aactgaaagt gttaatgtaa cagacctcag gagcaactgc gctcagttat ttaacaaata 60 agcagtaaag gaaattaaac aagcagaaat atggaggttt aaaattgata gcaggattaa 120 aattgataga ggttgttaag gcagaagaaa agaagattat tcttctttta attgacattc 180 acatgctttt atacctgcat gttttcctta gaagtgggac aatggcagct gcttctagtt 240 aaaacacaca agggacacct cacagaatca gttgttctat ttatttattt atcacctgtg 300 ttccaaagga cagaaaatga ggaccatgtc cgctgtgacc tgccatatct aagtggcagt 360 tccacattgc tattcctcat attcctcatt gctgttcctg ttcctcagtg ccccatgcat 420 tataaaccac acccagagca cagagctctt ctgagtgcaa ctcctcgttc cattctgccc 480 aaattttctg ctacagcaag cagaaatctg ccaaggactt acacacagga caagagacca 540 aaaatattga aattcacatg gaccatcact tatttgtcag gtcattcacc acaaggagga 600 caaagtttaa aaggaagagc cctgacaagc cagagcagtg cttgggggac ggaggagg 658 // ID JV172871; SV 1; linear; mRNA; TSA; VRT; 1260 BP. XX AC JV172871; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15689.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-1260 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-1260 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; 22469489e12d77d4980b3bf26cca68f9. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..1260 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 1260 BP; 403 A; 287 C; 287 G; 283 T; 0 other; gggggaaaga aagagagaag acagaaggta agaaagagag agagaaaaat accaagaaac 60 agaagtccaa tcaagacctg aatatgttta atgatatatt tactaactat tatggtctaa 120 acaaccatta ttaggcaaaa acacagaaga ttagagaccg ttctggatgc ggcatctgtc 180 caacttgtac agcaggcatg agcagttcct gtgtgacact ggccgaggtc ctgtgggcaa 240 aaggaagctc tctggaggaa gaagaaatat gggcactcct gcacctgtcc acaaggcagc 300 ttctggagga tcttcacaga gaccctgcca tctgtgtgat ttgcccgtgg tcagtactac 360 tgtctgctga aggaaatttg tttttccaaa acaatgcatc tcagacagaa gctgcccctt 420 tcagtgcacc agaattgctc caccgcccaa gtaaaaacca gcactttgga ctaacaaaga 480 tgctggtgta ttccttagga atgaccctct attggtcagc agattaccag gttcctccaa 540 accagtccct ccagctgagt gaccaactac atacactctt gctgacactg tgtgaagatc 600 tgccacatag aagactttct cctgagtcca ttctggaagc atgcgaagca catcagaagg 660 aatctgcttc cttaccagca aaattctaca taaagagaat ggttcagttt gcagtgggaa 720 gtgtcagtga gacagagcag gtggtcactg aagacagcac agcctcccag ctcaacagaa 780 gtcacgtgat aaggaaaaga ctgcatgaaa aaatatccga cacctcaaca ctggcatccc 840 agatgaattt ccaccaagac aaagggccca gattaatgaa ctatagtcag tcaacagaag 900 attacagaca actgtctgtg gattatagtg actctaatag tatttctgaa agtacatctt 960 tgatactgtc taaccgagga cacaggagag gaagagttcc agagacacac agatcatgtg 1020 acaccacact tagtggatca aggacagaaa gcagctacaa gctcttcata aacaggtcgg 1080 tgagtgctgt agaagaaatc ccggctggaa ctcagaggaa cggccgacag aacctgctga 1140 gcttgggctc caccttctcc gtgtccacaa aggactactc agcagctgct gcatcacaga 1200 aatgcttctt ccacaggaag gtaaaagttt tcaggtccag aatttgttat tttgtctagt 1260 // ID JV172872; SV 1; linear; mRNA; TSA; VRT; 678 BP. XX AC JV172872; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15690.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-678 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-678 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; 37a3fcc6a49ba596e75d7a476eb441b2. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..678 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 678 BP; 159 A; 140 C; 202 G; 177 T; 0 other; tgctccagag ccccaattcc agaggatttt ggttccaatt ccagaggatt ttggttccaa 60 ttccagccat tcccagagga ttttatttat tttttggttg tgtttcagag caggggcacc 120 aacgcttccc tctgcagccc tgattaattc cttattaacc tcattaccct gattaattcc 180 ttatttttgt gcttccaaag gggaaaatct tgtgctgcag aggtgacaaa gctgcagttt 240 tgcgcctggc agcaatattt tgtgcatttt tgtgtctggc agcaccgttt tgtgcatttt 300 gtgcattatt tttgtgtctg gcagcagctc caccccagcg ccctcctggc tgaggcctca 360 caaatgagga ttttaattat tcaaaggcag ccagagcgtt aataacggga taaattaatc 420 acacaggaga ggagcaggga aaagctcttg gagggtcccc ctgagcacaa agggggatcc 480 gaggagaacc tggagctgct gccagagggg gaaggggctg caaaggagct ggagagggtt 540 tgggacgagg gagggaggga caggagccag ggatggatct gggatttggg aattccagga 600 gccagggatg gatttgggat ttgggaatcc cagggcacag ggaatggatc tgggatttgg 660 gatgggatcc cagggcac 678 // ID JV172873; SV 1; linear; mRNA; TSA; VRT; 1711 BP. XX AC JV172873; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15691.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-1711 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-1711 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; 39f21575943fdd310049eddc7d91105a. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..1711 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 1711 BP; 436 A; 434 C; 451 G; 390 T; 0 other; atttaaagat cgattctctc ccccattaac ttgtcacttt tatccttttc cagttgaata 60 ctcgctgtgg atccgatgcc ccagcaccat ccgactgtga tggtgctgat cgcccctcgc 120 cagtggctgc atagtggaag ggagagtgcg tgctagtcaa atacacatta caaacaagta 180 gtggttacag cagaaagatt caggattaca ttcaaggtag aggcagaaca tcagacttgt 240 ttttcccaat gggtgcaaaa atgtatgtcc aggggaatac ctcttccaac aaagaactat 300 tgaactatta ttcaaagaaa taatagtaag aaagcagaga actgggcaag cctgctctgg 360 gcactgcttg gggaaaagac tttctaacgt tttcagggct gaggcaccac cttcccctct 420 gcccacactc actctcctgg cagaagcccc ttgtgcagag gggctcccac aggtcagccg 480 ggctcctcag gacatgaggc tcatggttct gcatcctctg ggctccttga agctcttcag 540 ccaatgcaag tatgttgggc aaagtcaggg tcattaaatt cctacagttt cacacctgat 600 ggtggatggg tgaaagtgca agggagctca gccttccacc agcaatctct gggaagggct 660 acactgctat caggcattgg catctctctg ccaatcactg gagtacctgg ctcagggcaa 720 ggaaccaggg ctgggtcagg ccaggactgc agctggagtc tcccaccttc ctctaggaac 780 tcattgcact ttattgataa tttccttctt tatttaatag ctgtagaatt gtaattattt 840 gtaccaaaga aatcacacag ctcgtttttg tgggggctac tgcaactatg ggctgaagaa 900 cctgattttg cttgagtctg acaaacaggc agcctcacat tttgccccta gcatctcaga 960 gatcctccca cttcccccat actttcctcc ttagaaactc cttgcctcct gcccccacag 1020 ctgggcagag caggtgaaag ctccttaagg ggattgctaa gtactcactg gtcccagtga 1080 gcacctgggc tgtgccaggg aagaattcag ggagggctcg ggaggataaa gggggtgctc 1140 accagactct tttattctga tttttaggat gtgacactgt aatttgagga acagaaagcc 1200 tgtggggaag gggagagtgg tgtcctcccc aacccggaca ctgagggagg cagataagag 1260 gctccaactt gcttacagct cagggccaga ggagagagga ggggaaagaa aggaagctgc 1320 cagcaggctc cccctgctaa tgattaggaa agtggctccc catgcagtta acaagcaaag 1380 ggctcaggaa agcaggagtg tctcccagct gccagttcag tggctgaggg agagcacatt 1440 gtgcagggtt ggcatttacc tgcctcacca tggagcagag gtaccagcac ccctgtggca 1500 cagcctctcc ctgggaagag gaccaggtac cgaagttgca gggaagaagc acggggctca 1560 cagctacccc tccccagcag gaagctctgc agcccacggt gggggaaagg tgggaacagc 1620 atcctcaagg agatactgag aaggatggca gttcatcctt ccattgcctg agcaggtcag 1680 tacctcagtc tggatgactt cagaagccac a 1711 // ID JV172874; SV 1; linear; mRNA; TSA; VRT; 525 BP. XX AC JV172874; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15692.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-525 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-525 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; bf322495cd9b37a13c9c9f497b2101fb. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..525 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 525 BP; 178 A; 105 C; 94 G; 148 T; 0 other; ccatagagac agccctgact ccagactcca cactgttctc tctaagagct gggggaaaaa 60 aaaggcagta aaaaattctt cctcagctag acatgattag tatgttcagt cttgagacag 120 tacaggtggg aacattctat agtaagtgac tttctccttg actttttcta cagtctcagc 180 tgctcaaggc aaaggatcat caccatgatt gaagaaatta aagaacaagg ttgaacttta 240 cagcatcctt cttcttttcc ctcttctatg cagaaagaga gtatacaact gaaaaagcta 300 cactggaaaa taagtaattt attgtaaatg gtgaaaaaag tatccagtca tcaataaact 360 gtcagcctgc aagagcactt ttaatctatc aggtattaca tttctattgg tatgcaatat 420 tgtaattcag tgtgaccaat ggaagcagta ttcagtacca aagagccagc aaagcagcag 480 gtccaaacta tctgcatctc atttcagatt taatattgca ataac 525 // ID JV172875; SV 1; linear; mRNA; TSA; VRT; 1616 BP. XX AC JV172875; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15693.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-1616 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-1616 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; 47460d68a2907d313a68adf51a09b5ea. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..1616 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 1616 BP; 495 A; 306 C; 340 G; 475 T; 0 other; gaccttaggc tgctcccatc cctgggctaa agaaaacaac tctgactcct ctcagttttc 60 tttaactgct cagttatcat ccgagaaaac ctcccctcct cacgttacag cagctgaagg 120 aatatttgga atagcaaagt attttttcgc agtgattctt tttatcatcg tgattctcca 180 agaaccctaa gttggatccg tctggtctca ggattggaaa gcgactctct gagcagatcc 240 aacatgtttc taaaagttcc aatcttcatc ctcctcctcg ggagcctgcc ttttgtagcc 300 cttgctcaag aagcaagctc agttctagaa ggagaagaaa gtgcaacaag tgatttcaga 360 gacagaaacg acacagaatt tgaagaagta ccaacaattt ttggagacct gaagaccaca 420 gaaagtagct tcatccagga tggagaaatt gaaaatgtta ctgcttatga agttaacaca 480 gaaagtgttg atggtgaacg gagcggggaa acagagaaaa ctgatgaagg tggtctgggg 540 acaattgcac tgcttggaat aattattgga atcattgttg cagttggaat ccttgcagga 600 ataataattg cagttgtgag gaagatgtca ggcaggccct aaacacagtt gaaacaagca 660 accatgccat tccctgctgg aaaatacaag tgcttcttat ttcatacaaa ctaaagacta 720 ttcctgtatt tgtgtgagaa gatgatccat ggaaaatata gtcaaaggat ttcagatcta 780 tggggatacc acacaattct aaggagcacc ctcacacccc ccttacacag agcatggaat 840 atttaatagg attttttatt aaccagaatt ttactagaag aaaaagatat tgcagtaaaa 900 aaacccctgc agcaaagaga tgtacatctg aaatgtgatt tgcaggtatt atatgcttgg 960 gttttaaatg ttaccaaaga ttatttcaca ttacattata tgtattcttt taaaacaaaa 1020 ggtggttttg cctggttaag tgctccttaa cttgtttatt tactacatga tgtatcaaaa 1080 aggagaaatt agcttcagtg agaaccagtt atttacaaat taggaaaaat actggatatt 1140 ggaagctaaa atctttctac tgctgataca gattttctgc tcttgatatt tatgttattt 1200 tgtggcaaaa tatggtaggt ctggctggaa ctgatctacc aactgagagc ttgctcgtct 1260 gactatggca tcaggaattt cctgccttct cttgttgcag agacatgcag gaattgaaat 1320 acacatcctg aattaagggg tgcttggaaa atacccagtt ttgatgggtc actttagagc 1380 tgacgtgtag aagcttttga attagtgtac actgtgtttt ctcattatgc ctgtcccatt 1440 ttctaactgt acagctgatt tgtttgacaa catgtgcaac accaggtcag aatgtgtcac 1500 tgaggtgcga tgcagctttt ctggggcata tttagagcag cacaacctgg atatacagag 1560 ctcagagcaa aggctttgca tctcaagtga ctgcagtgca tcaggtttcc taaatg 1616 // ID JV172876; SV 1; linear; mRNA; TSA; VRT; 914 BP. XX AC JV172876; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15694.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-914 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-914 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; 0e7382a13178f2a0f7846d45b33eade8. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..914 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 914 BP; 286 A; 179 C; 160 G; 289 T; 0 other; aaactagagc aattactaac ctaggttata cattttttaa ttctaacatc tctcctccat 60 ttttttgttc agggtattgg catgagctat ctcatttact ttcaggtgag atttgtcaaa 120 tcacaataca cttcgggaag gtattttatt gttctattta atgtcagaca cttctttttg 180 tagttctcag agcaaaaaag tccagaaaac tcttttccta atgtgataat atctgttaat 240 gtctaaagta tctctgtcta tcaaaaaata gcatacaagg atgcggtggt attcccccac 300 tgtcaagttt tctattggtg gtaccttagg cagttttaat cccaggcatg aaagcaaaat 360 tccacaattt aacaaaaaat tacatctttg ccagggtttg caaagtgaaa atacagagct 420 cttcatagct ctgctaggga gcaaataagc agctcctgtt atcacatgct ctatttttta 480 aagcctgtta aattagagat tatctagaaa ggttgcagct ggggcaaatg atcacatcag 540 taatccatat tttaagatcc ctatttccaa catactccat catcatggtg agctatgaaa 600 gcattctgta aggcattaac aattctttac agataataca aatagtcaca gaaaacagat 660 gagccaaagg agatatgttt aatattaatt ctaaagttag aaatcaggca agcataagca 720 agaaaagaca aaacaatgac cttcccagct cagccttttg ttcctcttga ctaaagatgt 780 cattctgcaa gactgtgttt ctgtgctgtt cctttgcact gcagacagaa aactgccctt 840 tttttgtgca tcatcatctg gaactggtgc tggaatgaga cactagccct gaaagctgtg 900 ctctggggcc acag 914 // ID JV172877; SV 1; linear; mRNA; TSA; VRT; 1758 BP. XX AC JV172877; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15695.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-1758 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-1758 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; 57b618c106e098d97444256f301ee463. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..1758 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 1758 BP; 472 A; 428 C; 345 G; 513 T; 0 other; atagaaatgc tttattatgt ttatttgacc aaagtaatta aaataaggca ttgcaggtta 60 gatgtaaaca tagaggtcag ctgcacggca ggtggctgct gcacagtgag caggtgtatg 120 gcaacaacag caagagtgtc aatttctgct tctcaagggg aaatacaaat tcaaagttac 180 attaatattt ctttttattt gttattaata tggtttctct cgagatttga ttctgaaaag 240 caaggtttgg attcaacaca atgggttcaa gtctgaaaga ccaagagttc cagagataaa 300 attccctttc actactgcag ctcttgacac ctagagaact actctatatt gtacaaagac 360 atttaaattt taagttcatt gaatattaga tatcctgcat gtgagcacac tgttattact 420 aacatgtgct ttaagtggca cttcctttaa agaacattat acagcatatt tattttactt 480 acattctgat gtctgatttt acgccatata ttaatataga aaaggattct gcaagactct 540 gcaaagtagt aatcatctgc cctacttgtc actgacaatg tctctagcaa taagttcctt 600 cattatttca ttggtaccac catagattgg ctgaacacgg gcatccacaa aagcttttgc 660 aattggatac tcccacatgt acccccatcc tccgtgcatc tgcacacact gggtagcaat 720 gctgttttgg agatcagaac accagtactt ggccatggag gctgtggcag agtccaggcg 780 tttgtctgca tgcagctgca aacagttgtc cataaaagct cggcccacac aaatctgagt 840 ctttatttct gccaacttgt gctgtactgt ctgcaaatgt gcaattgtct tcccaaaagc 900 ttttctttgc ctcacataat tccttgtctc ttcaaacatg aattcacagc tagcaagagc 960 catatcagca atgagcagtc tttcctgagg cagctctgcc atcagatagt agaagccttt 1020 gttctctttt ccaagcaagg cactggctgg caaccgcaca tcttcaaaaa acagctctgc 1080 tgtgtcttga gctttcaggc caattttgtt gagtttgcgc cctttgatga aaccttttgt 1140 tccattttcc accaggaaaa ggctgatgcc gtgagcaggg gatcgggcct cccggtcagt 1200 aaccgcaacc acgatcacca cgtcgctcat ccaaccattg gtgatgaaca ccttactccc 1260 attaagaatc cagtcacttc catctttttt tgcatatgtc cgtactccct gcaagtcact 1320 gccagcccca ggctctgtca tggcaatagc tccaatgcac ttgcctgcaa ccatctgggg 1380 gatgaagtgt ttaatctgtt cttcagagcc atagttggca atgtagggca tgactatatc 1440 tgagtgaagg ctgaaccctg ggcctgtaca gttaacatac atctgctcct cccagacgat 1500 ggctgaagag agaatatctg ctccaatgcc tccatgcttt tcagcaatag caacccccag 1560 caagccctgc tgtccagcct tttcccagag ctccctgctc acttggccat ccttctccca 1620 ctctgcatga aaaggcagca cttctcctga aagaacttcc tggcactctc cctgaagata 1680 tcatgatctg atgagaagat cctccgagtg cctatgtcag tcaaagtttt agcagaagat 1740 ggctccaggc gctttgtg 1758 // ID JV172878; SV 1; linear; mRNA; TSA; VRT; 508 BP. XX AC JV172878; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15696.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-508 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-508 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; 27be461c38888a8982eef67b31058247. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..508 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 508 BP; 187 A; 103 C; 65 G; 153 T; 0 other; tacaaatcaa accaaacccc tgaaaattaa acttcagtta cgctcattgc atttattcag 60 cttaggttca gaagcatgga aaattacttc atagatttat ctgcaaacag cttcagtgtt 120 tgagaaaaaa tagtttgctg aaaatacttc aaaaaaggat cacctaataa caaaacactt 180 aataagctat ttccttagta agctggaata ctaagaaggt atttctttaa gaaagcaata 240 aattattatt atgctatagg acaaatgtta aatatcggca aaaactaaaa aaagaattaa 300 gcttcacatt ataaataatt acaagtaaaa gcgtgcaatt gcatgtttca aatacattat 360 ttacctgcaa caccattcaa ttcggccttc cccttcacaa gtttttgccc agtgattatc 420 tgcaaggttt ttcattgcca cagcatattc acacagagtt tcctcatcct cacaatgctc 480 acgccagatc ttatcaaagt ctcccact 508 // ID JV172879; SV 1; linear; mRNA; TSA; VRT; 1028 BP. XX AC JV172879; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15697.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-1028 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-1028 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; c50b47edd5181e82adc3221c0b3f0b5d. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..1028 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 1028 BP; 242 A; 232 C; 172 G; 382 T; 0 other; gtcaggctct atgaacaagg catggttgtc aatattacct cgctcagatt ttggactccc 60 ctgtccattt tcagctgcaa gaaattgttc ctgatcagct ctcttggtca tttctacatc 120 atccaacatg actgctgcat taggcaatct aactttacac atctccagct cagacttgaa 180 gttctcaggt tctttttctg atgagactac atgaagagat aattcctgct tattgacaga 240 aacagatcca tgtttttcat ttatgccact gttttcttcc ttaacagcta cagtagcttc 300 ctccagtcct gcaaaagctg agttatttga aattatttgt gcctcctgga agttcatttc 360 cgagtttgat tgctcaactc ttattttcaa acctacatgg ctttgctctt tttctgtctc 420 atagatcagc ttcaaatttt catcagtctg ttgttttgcc tcttcctgaa gcatttcagt 480 ggtgatttga ttttcacaga aatagccagc actcaaaacc ccactactgg aaaatgacag 540 tgcactggca tggtctgagg ggctggttat ttttcctgat gtatttctac actcatgttc 600 tccagaaatt ttctcagtgt aatcttccat taatcttgct tccacagtct cagtttcatt 660 gtcacacgca aaggcatctc ctgcagccat tttctcaatg gggattattt taagattatt 720 gtttttcaga gctgagtttt caacaggcac tcttaattta taaggagtat tgttttcttg 780 ttctatgtta ttttcaatat ctgtgcacag cagcgaatga gaacttaaat caaggacctg 840 tagctggagt cttgctgctt ccagctccaa agagagattc tcagtttgtt ttctttctgc 900 tgccagtttg cattccatct ccatagtcac attattcagc ttccgctgcc attcttcctt 960 ttcagataga ttttgctgtt tgagatgatc tatttctttc ctttcagaaa ctataatttc 1020 tttcagct 1028 // ID JV172880; SV 1; linear; mRNA; TSA; VRT; 2274 BP. XX AC JV172880; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15698.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-2274 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-2274 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; 447379c55855641a948d935b01eba81c. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..2274 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 2274 BP; 603 A; 544 C; 542 G; 585 T; 0 other; aaatgctgat tctccctctg gttgtctcaa gcttgacgtc tgggctggca gccctggacg 60 ccaagacttc cagtcgcttg ggaatcataa ctgtcactta ctacctgtgg acaacctttg 120 tggccgtggt cgtgggaata atcatggtgt ccattatcca ccctggtgga gcagcccaga 180 aggagagcac tgaggagggt ggaaagccca tcatgagctc tgcagatgca ctgctggact 240 taatccggaa catgtttcca gccaatcttg ttgaggccac attcaagcag taccgcacca 300 ggagcattcc catcattaaa tcgaacaaag cgtcagccga gagcagcacc cgccgcatca 360 tcatctacgg cgtgcaggac gagaacggct ccaacgtgca gaacttcgcc ttggacatca 420 ccccccctcc tgaagtcatc tacaaatcag agccaggagc cagtgatggc atgaatgtac 480 tggggattgt gatattctct gccaccatgg ggataatgtt gggaagaatg gggaacagcg 540 gcgtcccttt ggtcagcttt tgccagtgtt tgaatgaatc tgtcatgaag atagtggcag 600 ttgctgtttg gtattttcca tttggaattg tgttcctaat agctggcaaa atcttagaaa 660 tggatgaccc ctcggccatt gggaagaagc tgggtttcta tgccatcacg gtggtgtgcg 720 gcctggtggt gcatgggctc ttcatcctgc caatgatgta cttcttcatc accaagaaga 780 atcccattgt cttcatcaga gggatccttc aagccttgct cattgctctg gccacatcct 840 ccagctcagc cactctgcct atcactttca agtgcttgct ggagaacaac cacgtggaca 900 ggaggatcgc gcgcttcgtg ctgcccgtgg gagccaccat caacatggac gggacggcgc 960 tctacgaggc cgtggccgcc atcttcatcg cccaggtcaa caactacgag ctggactttg 1020 ggcagatcat caccatcagt atcacagcaa cagctgccag tataggggct gcaggcatcc 1080 ctcaagctgg cctggtgaca atggtcattg ttctcacctc agtggggctc ccaacagatg 1140 acatcacatt gattattgct gttgactggg cactagacag gttcagaaca atgatcaatg 1200 tcctggggga cgcgctggct gctgggatca tggcccacat ctgccggaag gagtttatca 1260 aggatggtga cgaggtgcca ttgatctgtg aaactaagcc tgttaacatc catcagattg 1320 tggcttacca gagaaatggc tgtgtgaaga ccatgaatga atctcgtgga ccagaaacag 1380 tgaaagggtt gcagcaccat atacccatac aagtggagca agaagaaact ccagtggaga 1440 atcacactaa gaaatccaac agtaaagacc actgcactat tgaaataaat gaactagaaa 1500 caaatgtgtg actgccacac tcagaggtat ctcacacccc agtgacctga tacccaatct 1560 ctacctcaca gctggaagaa ggactctttg ccttgaacag gaaagcgtgg acttatcacc 1620 accctgcttg tactggagct aggagaccag ctgtgaacgt caagaaaggc acacagcttg 1680 caagagacat gggcttcttt aggtggaaga ttttactact gaaaaattaa ctaatggact 1740 gctactgttt tattctgcac tcactgactt caatatggta tttgacactc ctttggcttc 1800 ctttttttta agcttttttt tatttgaccc tttttgattt tctaaccaaa gccttttttt 1860 gtgaatctca gtaattatcg atactgtaga atttttgcta tgtgaaaatg tttcaccaaa 1920 attgctaaag atactaattt tgtctaatat tcactaaata cagagtttgt gcttagtttt 1980 agaacagcag taagaaaatc acactgattt cctgatctca aggggttcca tctattccta 2040 aataacagtg caagcacagg ggaagggaag tgtgcacctg tgcaagaaag ggcattaagg 2100 taactgtgat gggcagcctt cagagacagg cagtcaagtg tgatacctaa cacaaagatt 2160 tcctaggtca ctgcagagca cagtttgcct tccaagtgcc agatttatta acctttttta 2220 acctaaccct tcagtaaagt cagttccatg cacttgcagt ggcagaggcg atgt 2274 // ID JV172881; SV 1; linear; mRNA; TSA; VRT; 1516 BP. XX AC JV172881; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15699.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-1516 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-1516 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; d49ef8752778f10a82dab6adbd16de81. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..1516 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 1516 BP; 440 A; 329 C; 297 G; 450 T; 0 other; atttttactt agcgagctaa agaagtcagg tggtacataa ggagtaaacc aatgtaaaca 60 gtgtaaaaat atagacttct aataccagcc aacccaaaaa tgaaatatcc caatatatta 120 aagaaaaata aaccagaggc atgcaaaata ttgtttgtta aaatacactc aaatccgtgt 180 ggctaaagtg aaagtcacaa gctagtgagg tggatatgca aaggcaatgt ttctttcttt 240 attttcctta gactgattgt cattcagttt tccactgata aataagtttt cagccttctt 300 caacccactg ggaactgaat ttctaagatt ccaagcaggt gctgcaagga ggtttaagta 360 attgttttta tggtctagtg tgatatacaa ccccactcaa atgctacaag caatggtgat 420 ctgttagcat tatggaggaa aaagcttggt aaacaggttg ctccaggtgg agttgaaaga 480 tttttgagtt tctcctcacg agagcagtga caaactccat ggtaaatccg gtaagccact 540 taacatttta tttgcaacac agaacatttt ggcaaccgat atattagagg aatctgaata 600 gtgacctgca atgcatgtgc ttttcagaaa aatcaagttt tgtttcaggt atgcatcagg 660 aacatcaaca gcacaagcct tttctcattc aagcaactgt agcgatgcca tctgtcccag 720 atgtgcttac aggtctttct tatcttctgc tttatttaaa cgttgctgaa gctgttcaaa 780 ttccttcatc agatggtcat attctcttct aaggctttca gactgctttt taactgcagc 840 cccttcagtt tttgccttat ggaaagcatt tgatgtcttc tgtagctctg ctttcaaacg 900 ttcaacttcc tccttcaact tctcctcagt tgcatctgtt gactctttct ttttactatc 960 tccttttcca ctcaaggcct cctgcagcct ttcattctcg gccatgtatt ttttggctgc 1020 ttcagtagca tcatttactt gtgtttccag agctgcatga gatgccatct cttttgccag 1080 ctgagtgaga agggtaacag tacgtctcaa tacaagccaa agaaataagg aaaaacctga 1140 gaggtacagg tttctttgcg accgaaagag tttcatctga atatgatcaa aggcactgct 1200 gttgacattt gcagcctttt cattcacatg aacagatgag tatttcctga cttctctaac 1260 agcatcaaga aataagacga tcaacaaaac tattattgta aggaacatct tgttccaaag 1320 tactgccatt ttgctccata gaggaaacat aaaaatcttc tgccatctca gcggagaaat 1380 gaacggcagg cagagcacga gaattactcc gatttcgcca tacaggaagg cagccacagc 1440 cgtccactgg aaagtcatcg tcccggcggc ctcgtcagcg ccggcacccg gcggagctga 1500 tggcggccag agggcc 1516 // ID JV172882; SV 1; linear; mRNA; TSA; VRT; 1917 BP. XX AC JV172882; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15700.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-1917 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-1917 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; 44427bcc5f25237e35ddb8cf6dca9673. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..1917 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 1917 BP; 545 A; 426 C; 374 G; 572 T; 0 other; agttagttat taatccacaa gattattccc tcttcccctt gtgataaaac tgtttccaca 60 ggagggcagc taaacttaat ttcttgtaca cagtcaaacc aaagatgcca ggctttttcc 120 taatgagaat attctaattg aaaagcagat gctgtaaacc ccactgatgc tcaggggtcc 180 aaattcaccc atggacactg gaagtgtgtc ccaaagtcag agtgaattta acactgagat 240 ggttcctggc tgtgccaaga gcagaattcc aggtttccat cccctcggtg catttcatga 300 atccagctgt gcaacactgg gcagaaatgt aaacaatgat gtcacagtgt gagtgacacg 360 ggattcagct gagaacagac cctgcaccaa ttcctcatcc atcaggtaca tgggacagcc 420 atgactgcca caggcaaggt ttggaactgg actctgatgt aggagcacct gaaaaagcaa 480 gtgttggctt actctttatc ttacattttt caggtcctgc cttggtctgt cccctttgcc 540 tcctcacatc tttctttgtg tgaatttgtt tcattgccac actggtgaaa atcactgcag 600 tggtttgttc tcatatttat ttctaaataa agtctttcat ttttaaaaga tactcctgat 660 ctaaggatgc tctgaattca cgcctgcata tggcatgcct agagagcatc caaaagcttt 720 actcagcctg ctgaaatgta taataaatta ttaccatgat gcaaacacaa atacttgcac 780 attctgtctc tattatgaca gaacacaaac accacttaat gcagcagctg tatgctgaga 840 caaatgttgt ctatgctgag acacagtcaa tctcctgatc tttttcctct catgacggtt 900 tctatttgtt atggactttt tggagaggtt ctaggacatg tgtaatacat atataagcat 960 caaaattaga tggcttagaa ggaaaaaaaa aggcatttca aagtgatctt attttaacag 1020 gcagaggagg catacatgtt tactttttaa cactctgcaa atcatctgag ccttgatctc 1080 agttcttaga ttgggatcaa gaataaatgg ggaatattca tcaagatgca tacttttgca 1140 caggatctac tcctgaacag aaggccacac catttttgaa agctgattaa caacatttgt 1200 tggcaatcca tttaacagag gaggaggccc tgcccttggt actgtttatt taaaacaggg 1260 taaaaaacca gatccttctc cagatttcac agttgtagat gtagcaactc tatgctgttt 1320 tgaaatcatc acatgatttt ttagagttca cacaaacatg ccacagttgc aaaaacatgt 1380 ttgtgtcagc ctggagtcag acctgccctt cttgctccac actgcagtga gttttccctg 1440 ctgatttcat gcctggcatt ttcagaagag cctgaggtgt ttcagtgctc aagtaccact 1500 gtcttacagc tgaggcttgt ctgaaaatcc tcctgcagtc tcctgctctc ctgtgtggat 1560 gaacaaagga ctaaaaggtg gggttctact ttcatgagtg gtttttttac catttctctt 1620 gctacctgtt ctctgagggt ctaattcaaa gcctattatt aaagatatat taaagagagc 1680 aattttacca aggttgctct caggcctcca cctgcacaag gtgaaatgcc cagcctcagt 1740 gacagaactt ccacaagaca ataacaggat tcaggaattg ctgccaagga aaactgtcac 1800 cagctactgc ctgtgctgtg gaaacagtct tattgatatt ggacaagtcc tccacatcct 1860 gatgtggttt gacttcctag tgacccctct tcctcccaaa tgtagatata caaaaca 1917 // ID JV172883; SV 1; linear; mRNA; TSA; VRT; 912 BP. XX AC JV172883; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15701.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-912 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-912 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; 3012362b737000c47d901fed7c6ddae9. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..912 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 912 BP; 230 A; 249 C; 247 G; 186 T; 0 other; aggaggcttt gagataaacc tggaccaccg gaagctgaaa acgccccagg ccaagctctt 60 cactgtgccc agcgaggcct tggccattgc agtggccaca gagtgggact cccagaaaga 120 caccatcaag ttctacacca tgcacctgac cactctgtgc aacacagcgc tggacaatcc 180 cacacagcga aacaaaacac agctgatccg agcagctgtg aagttcctgg agacagacac 240 ggtctgctat cgtgtggagg agcctccagc cctggcagag ctacagaaga atgaatggga 300 tcctgtggtt gcctgggcag agaaaaggta caatgtgaca attggctcct ccaccagcat 360 cctggggcca aacattccag ccagcaccaa ggagaccttt gtgaaccacc tggcatccta 420 caacatgtgg gccctgcaag gtatagaatt tgtaatcacc cagctgaaat cgctgattct 480 gtccatgagc ctgattgaca ggcacattac agtagagaaa gctgtgcttc tgtctcgcct 540 ggaggaagaa taccagatcc ggcgctgggg caatgtggag tgggcccacg actacgacct 600 gtgtgagctg cgtgcccgca ctgcagctgg gactctcttt gttcacctct gctcagagag 660 ctcaactgta aaacacaagc tgttgcagga ctgaggcagc tgggcagggc acagaaagaa 720 aatgtccagc tgggaattgc tggcctgaca caatggatgg tagctacctt cctgccattc 780 cacttttcct gggatcagct tcatgtgctg tggttttgtg ggcagctctt cagttggatt 840 gcctgctgca gtgcagcaca caaggaggag aggtcaaggt gagtctcctc tgaatcccca 900 agccagcagc tc 912 // ID JV172884; SV 1; linear; mRNA; TSA; VRT; 1288 BP. XX AC JV172884; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15702.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-1288 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-1288 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; b1db6441b30082c56b1d8824953ecc86. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..1288 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 1288 BP; 372 A; 282 C; 195 G; 439 T; 0 other; tccattcccc tttatttgct gttcccccct tttttcaagg atagtcctta ctgcttcgga 60 taattcagaa aaacgaatta ttattgctac aaaacaaaat aataaatgta cagaaagcaa 120 gctccctatg catttatttt tttgaattga gttcagcaaa ccttttctcc aagtaaattg 180 attccaaggt ttactataaa ggtaaagtgc aaagaaaacg caccccgaga gtaaagccta 240 tgtgaaggag ttcatttata tatatgttac catctttatt acactcttat ttttgttggc 300 acaggaatat caacctgttt cccttttgag atgtaagaag gtttatatac ttttcatata 360 tttccttcta caattaaaca cttttcagct atcccttagg agcggctaac tcttgtacaa 420 tcacagttga caagaaaccc ttctccactt cagtcttcaa agttctcatt tgaataattg 480 ctacttccac caagatctgc actagggata tgttccacaa aaactcacgt attttgcttc 540 tacacaaacc ccacgatttt ctactcataa aaaggttcta aaaaggatgg aaatcctttt 600 ctactctttt tatggcttgg tatcggtaat tcgctttagc gccatccatt ttcagggcta 660 gttcattcgg taggtgagtt gttacacact ccttagcgga tttcgacttc catgaccacc 720 gtcctactgt ccttatgaac caacaccttt tatgggatct gatgagcgaa tagtttaggc 780 accttatcca agcgttagga gcatccctca tcgccagttc tgcttaccaa aaatggccca 840 cttggagtta ttttatttaa ctgagtaata tacaaattga gatatattac cctttttacc 900 cattgggagt ttgagaatag gtcaaggaaa actgtttccc tgattcctct aatcattatc 960 tctacctggt aaaattatat gtttcaactc cagcgatcct gagagatctt tcgaaaataa 1020 ccagctaata ggcttttcga ttagtctttc gcccctaaac gtgattgaaa tgaacgattt 1080 gcacgtcagt atcaattcga tcctccatca gactttcgtc tgacttcaat ctcatcacgc 1140 ttagttcaaa gcctctcggg tcctaacaaa tatgctcata ctcaatgaag catagttgcc 1200 caccggtatt gtatgcaatt agtaaaaagt ttccttttac tatttctaca aaagtttttt 1260 ttacattaat tatgcgtaca tttttaat 1288 // ID JV172885; SV 1; linear; mRNA; TSA; VRT; 573 BP. XX AC JV172885; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15703.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-573 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-573 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; c11d521da01c75748fcdc8abf541216f. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..573 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 573 BP; 151 A; 135 C; 138 G; 149 T; 0 other; tccatctcac ataccatgca tcctccctaa gcttcctctg cgggaatgct cctaattaag 60 cacatgactt ttaggtatgg gcaggtctgg atgctgtcta aggagggatg tggaaagaaa 120 gcacactgct gtgcagctgg ctggctttta cattgtttga cattttggta ctaataacat 180 ttttgctcca gttattaatg gcccatccag gccgacctct gcttgactcc gtggcctgag 240 aatcagcagc gtcctgctga cagaggcatc agcaccagag cgcagtgtta atactttcat 300 ggccagattt gtttaaaacc caatcgtggc aggggcctgc agaaagccaa atgctgctct 360 tacagcactg gatcctcttg aatagcaggg gcgagtctgc agctgaggct ggaggcggaa 420 tggaaacagt aacaggttca agacccaaat ttacaccaaa tgctactgag cacaaatgtg 480 tgtggctctg taaatagaag gtagctcgtt ttgctcctcc agccagcatt aatgcattaa 540 cacattaatt ttgcccaaag gttctaaaga agg 573 // ID JV172886; SV 1; linear; mRNA; TSA; VRT; 641 BP. XX AC JV172886; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15704.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-641 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-641 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; bb4bb229ce6e0789d75d2fb68847d773. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..641 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 641 BP; 148 A; 131 C; 164 G; 198 T; 0 other; ggtatgaaaa tcacagaggg gacagagttc ttgctttgga ttcctggtgc tttttgtgac 60 gagttttctg tagtgcaatg tgttacagtg cagtgctctg gaagttctgt ctttcagtct 120 agtatgtcct gttggagtag ctgaccctgg aaactatcag cttcagatga atagatgtaa 180 tgtgaaacaa atggcaggtt tgaattgctt tattacagaa agcatcagga gatgttcaca 240 taaaaatgcc agttctacta tagcagcatt tttctgattc cttggtcatg tgttaatttc 300 tagccaggtg ttagactagc ccctgccttc cagctgggaa ctagcacctc atttctgtgc 360 tttgtggcaa atatcccatc agaaatgaca tttttggggg gatggaattt ctgtggcagt 420 tggatgaggc cattcatttt gaaaagcaaa ccctcccttc tgaggcatca gagcggttgg 480 tgaggcggtg tcacgggcag ctctcctgtg ctcagcttac tgcagagcag ggttggtacg 540 cagtgttctg acatcccagc agagtctgcc ttcagatccc ctcatggttt ctctgtgaaa 600 gaggaggtac ttcctttcag cacaactctg aagtctgtgt g 641 // ID JV172887; SV 1; linear; mRNA; TSA; VRT; 1641 BP. XX AC JV172887; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15705.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-1641 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-1641 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; e3bc181a1b30b3c3ad4d2af85be60110. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..1641 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 1641 BP; 530 A; 365 C; 316 G; 430 T; 0 other; tttgcttccc tctcctttca tctgaagctt tgcatggctt tgttttggaa ttctaatgaa 60 gacaaagcta ccacaaacca gcagatttag aaacagagga taaaaatgct gagcaaaacc 120 atccagcaac atttcaagca atgtttcact ttagatgcgc ttgctcgtca gcagaaatat 180 tgaaatttta gctggttcca gaaaagcaca aacaagtgat ttaacatgaa atgaacttta 240 caaacagtca acttacagag acaaaacaag gtcggagtga ggagccagag ctgctcacgg 300 aagagaaatg ttttggggag cctgaaggga agaagaatga aactcaaata ttgctttaag 360 aacaactttc agctttaagc atttccaaat gccatgagaa aaatgtattt aaaatataac 420 ttcaaccttt ctggatgcag ctcccagcca cgagtgaaag catttcccca ggagagggca 480 ggagttctgt acacaggagc tgccagcccc agaccctggc atggctgaaa tacaagcagc 540 tcctggagtg gagaacacag ggcaaaaatt ccctgtctca aacacctatt tctgcctaag 600 cctttagcac cacagtcccc cagacataaa cttaattatg tcagtcaaac gtttgtattt 660 gttaattcct ttgaagggac aacactggaa atctgtgctg gttctggagt tcaccagcct 720 gggataagat caaaactcca caacaatcaa taaaataatg aagcttattt aaccttcctg 780 tcgcagcagt ctcactccca gtctattttt aaatccctcc aaggctcaca gcaaggcaac 840 agactgggaa aatcaaccgt gtgggagctc agaattgctg tctgaccctc aactaattcc 900 agaatggccc aaaccagcct aacagcagca tcatttttaa cattagagaa gccagacaca 960 gtagctggag ctgtctgctt tcagacactg aaccctcagc agttcatgga cagctctgag 1020 taaactctgg tgtggagtga ttccacagca ggaagcttcc agcactctca tgatatgaag 1080 taacagaata ttaaaaagct gaaggaagtc cagcaaggca aaggcacaca cacagtcacc 1140 ccagctgggt aactgggttg catagataca ccatgaccat ggttacaatg ttcagaagca 1200 gccagggaag aaaatgaagg aaaaagttcc tttccaggat gatttattaa tcatttgaag 1260 gaatcatagc caggctacaa ctgtcaatac gtggttttta aacatattcc aatttctcct 1320 gtttacagga ggaacactca aggtgtttac atttatttta aatgtcactt tctttctaac 1380 aagtgaagag atcccatttt aaactcacgg ttttagttca gctgccagcg tgagagaatc 1440 ccacaacatt tcaggttgtt ttgtctatct gattttcctc actttatttt tacagtaacc 1500 ttgattactt cagtacataa catcctgctc aaccctcaga gtgagctggg taacacattc 1560 aaaataacat ctgaaactgc tctgaaatct ttgatcattt ttgcacattt tcactgaaaa 1620 gatcctgctt gaataaaaaa g 1641 // ID JV172888; SV 1; linear; mRNA; TSA; VRT; 942 BP. XX AC JV172888; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15706.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-942 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-942 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; a9fa8fa2ebba1f2917c424cbb9978617. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..942 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 942 BP; 234 A; 213 C; 189 G; 306 T; 0 other; aatgagtatt cagagaagac attccaatat tctgagaact ccagtttctg gtgtgaatag 60 ttacttttct ttttacaagg aatgagatgt gtttaaggtt aattaatttc tttttgcctt 120 acttattttt agcagaaatt tccttatttg attgtctaaa atgacagcca tgatctaccc 180 tgttcctgtg actatccttt gactaattgc acctggcaat gtgtagataa agagaaccag 240 gaagataatg agaataagca gaattatgcc aatgatgatg tacttcttgt aattcctcca 300 gatcaggtga tacaaacact tgaaagggtt tacaaaccaa gagaaggatg tgtctggtcg 360 gttgggtttt tccaagggct caggctcctt tcgagctttg cctactggat tcttctcagc 420 ttcttctgct gtgaccaagt gaaactcagc ttccaccttg cccgtgagct ccccagcctt 480 gatgaagggc caccagcctc tgatgcgctt ctgctgaaat atggagatct tgttttcctc 540 gcttgctgcc acaactgtgc ctaagtcaca gctcttggct gtctttgctg cccgagggaa 600 cccattcagg tccagctcaa gagtgcccaa gaaatcatct gaagagagtc tttcaaaatc 660 ccacacctga agcaccagct cagcaggtat tttgcgttct gttttctcta aggaaaatat 720 gttttctctt ttggtaacca ccatctgttt ctctgctggg aggtagtgga aggggaacac 780 aaagcgccag ttgaagttgc cctctcctgt caaggaattg taatgtacat ctgtctcctg 840 tttgtcctct tccaggccct ttatccaccc ttttacatag atatcacttg atttttgccc 900 cgtaaagatg ttttcatctt ctaaaattac atcctctgta tt 942 // ID JV172889; SV 1; linear; mRNA; TSA; VRT; 1008 BP. XX AC JV172889; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15707.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-1008 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-1008 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; 16621b750565a56b49a0a98b2dcc18e8. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..1008 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 1008 BP; 248 A; 243 C; 208 G; 309 T; 0 other; aagaaatccc agtgtaaatc ccccccaaaa accaacatca actcccctgt gccaataaaa 60 atgcacattt aaggggatgg gaggggatat ctgggctaca gattaatttt tttcaagcta 120 gatcatcttt atctagttta atgtttgttc tgttaccatt tgaaattcaa tttcaggtag 180 ttcttcatcg tatcagaata ggatgcatca ttaactctaa gaggatgttt tcatttggca 240 tctgctattt tcaccaaatg tcaaggcttg acatttgcta tttatctggt tttggtgtat 300 cactcatact gagattttgt ttcttcttat ctgatattga tttcaactgt gaccagctgt 360 gttgctaata aaatcaacag gcaagtatct ggcatttagt tcttcactgc tagaggaaaa 420 gaaacaactc agtgacaaaa aaaagtagag agatactttt caattaggat gctcgcctgt 480 atcctcgtat tatccacctc ttagtacttc tgttgatgtt acatttctga ttgattcccc 540 cggggaagtc tccatggaaa tccttgcctc tcagatgaaa tattccttct tgctctcatc 600 cactgcctcc tggagagcgg ggtcgttctt cagagcggcg tcggcgctct cggcgaactc 660 ggttcccttg gcctcgttgg tgtggtaggt gcccttgtgc ctgtacatgt agcgcaccat 720 caccaccagc aggcagatga ggacgaatac cacggcagca atcacacctc caataacagc 780 cacatctgct ccagctgtgg ggctctccac ttctccatgt ggttgagatg tcgcattgtt 840 tggggaactc ataatttacg cctttgaaaa atgccttatt tgtgttgaca gcctctcttc 900 cctgctcaga actgacggcg ggattgaaca gaacagctgg aagaacccag gaaaatgctc 960 ctcttgttcg ggctctcctt gcctggctcc tgaccccttt gcaactcc 1008 // ID JV172890; SV 1; linear; mRNA; TSA; VRT; 1370 BP. XX AC JV172890; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15708.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-1370 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-1370 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; 38e194ca60be575e2f9798915cd2698d. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..1370 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 1370 BP; 491 A; 254 C; 337 G; 288 T; 0 other; gcgggggtcg ggggtcgtgc cgggccggcg gggcgtttaa attgtagatg gagaagcatt 60 tgaattttgt cattcctagt taagccatgc ctgtttcagc tgatgaaact gtggggaacc 120 tggctgtgag agatacagtc cttactccgg ctggaactga aggattacaa gaatcatcat 180 ctacacagaa tgtaaaagct cgacaagtca tatcaagaat cagtcgagag gaactggaag 240 acagatttct tcgtctacgt gatgaccata tgctactcaa acagtatgcc aataagcaag 300 aggagaaaat taaaagaatg accaccaagt taatacggct cgttaatgat aaaagaaaat 360 gtgaccaggc tggctctgga cccaagcggc tgggtcaggc tctggagctg gaagaaatga 420 ttgagcattt gcgaggaaaa gtctgtgagc ttgagaaaca aaatgagagc ctccgcaaca 480 aactcatttc aactaaacag cagctccaga ttcaaggcca taggccttgt ccgtacagct 540 ccgttcaatc tcgtgtgaac actggtctga aaaaagagag tgagactgct ggcatgccag 600 accacaccaa gaagggaatg agatttcaag gtttagaagt gagatcatct gaccttgtgc 660 ttcctaaata tggacggagt ctgctcgagg attcaagagc tgaaatcaga aatttggaga 720 ctgtcattga gtcccaaaag aaccaaattg aggaactaga ccgtgccaga gagattcttg 780 ggaatcaact aagaaggaaa gaaaaggaaa ttgaagaatc caccctacgg ctgaaagagc 840 agggtacagc aagccaaagg ctaaacattc aggacaatgt ggaaatgatc aaggtccgta 900 aacagctggc tgagaaaagc aatgctcttt cagcaatgga aggaaagttt ctccagcttg 960 aagagaacct aaagaacttg aagaccaatc atgatgcttt attagcaaaa ggtgatgagc 1020 tgaatgttca gcttaaagag gagcggttaa agtgctttca tcttcaaaaa gaattgcaga 1080 cagtagctat ttcaaacaga aggacagaag agttacagga aagaataaat gatctagaaa 1140 atgagaacaa actgttgaag gaaaactatg ataagctgca taacagtgtc ttcagtctgc 1200 cccatgaaca gcagtggaaa tcaaaggaac aacaactgaa actgcaaatt gctaaactag 1260 aggcagctat caaaaatgat ctagcagaca aaaatgaaat ccttgacaag atcaaagtag 1320 aaagagacca aaaggaaaag ctgatgcaag acaacaaaga cctgcagttg 1370 // ID JV172891; SV 1; linear; mRNA; TSA; VRT; 557 BP. XX AC JV172891; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15709.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-557 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-557 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; 12d6f1f205eb7990181d4ce950cb56e9. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..557 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 557 BP; 169 A; 105 C; 94 G; 189 T; 0 other; ttcacacttc tcttacgact ttcagttttg aagagatgag tggcatttga aactgtcata 60 ataggagtaa gtgccttggc caataaagcc cagagaactg attttctcct taaaattctg 120 gacatttttc caggctgtaa atggatgatc aatgatgact gtgctgctga actgcatact 180 tgctagtttg acactgtaca tgtgggactt aactggcttc atctggaaaa ttctgtcagt 240 tatgttatga acaaaattct tctgtacatc aaacaactga tttttggcac tttctgaact 300 gtctatgata aagactatat caatgagaca ctcatcacct tcatcttttg gcataggaga 360 gtaaatattc tttcctcttt ttctgttttg cccatgtacc ctctggcttg ttatcacagc 420 cagaagtata aaagtaaaag aaaaaactat tttttcctca tagtgacttt catcccaaat 480 agactaactt ttccttcctt tgaaggcatc cagaaagcaa attgtaagta ttaaaaaagt 540 ttcagtgtaa gaaatat 557 // ID JV172892; SV 1; linear; mRNA; TSA; VRT; 474 BP. XX AC JV172892; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15710.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-474 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-474 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; 49647d94c43fb7048576459ff10d6f96. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..474 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 474 BP; 158 A; 80 C; 145 G; 91 T; 0 other; tggatcaccc aaacagccct aatgtccagg gtatagccac aacagctaga agtcttggga 60 tacattttgt taccattggc ctttctaaga aagcagtcca gaaacaaaaa ttacgcatga 120 tatctggtga ttcgtcctct gaacgtgtcc tgtgcctgga tgatgagaat ctggtagttg 180 atgtagcatt ggaactggaa gccttgctac agaagcagtg tgtgcagaag acttgtgagt 240 gtgaaaaggg agaaaaagga gataaaggtg aaaaaggcaa tgatggcagc aaaggggata 300 gaggtgaccc aggaccaaaa ggaaacaagg gtgatgctca aaaaggggat catggagaga 360 aaggagaaga gggatctcct ggctacaagg gagacaaggg tgaaagagga gaatgtggag 420 cccaggacca aaaggagaaa taggtttgca gggctctgtg ggccctacag gacc 474 // ID JV172893; SV 1; linear; mRNA; TSA; VRT; 1075 BP. XX AC JV172893; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15711.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-1075 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-1075 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; 52c8d3c739be2af6cdf2e985e0bef358. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..1075 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 1075 BP; 317 A; 221 C; 201 G; 336 T; 0 other; aaaggatgtc ttagaatggc atctgtatta gactatcact ccacacacat tcctcagaag 60 ctccatgttg gatcatttag tctggaaagt acttttttaa gacagtaaaa gttgtttgca 120 attagatatg tttacaccct gtagacaata gctttgcata caaagagtaa ggtcaagttg 180 tcagcaataa catggctagt aaaaaaaaaa gccattgttt acagtcttga tgttcagtcc 240 tgtccactta ttttacactt atttttacag aaccatttga tgtttgctta tttgttttga 300 aatacacaga acaaaaccag ttctactgtg caataaaatt aaacagttgc atcatgctgt 360 ccttcatcca tgtgagaaga aaactcaagc ggttacttct gaacagggac ctgcagttca 420 gggcacttcc ctgctcaagt tgagttacag caaaaaagtt gtttctgtac aaatgaaagc 480 caaatctgtc caactgggga aaaggcaaat ggtttcattt actgaaaagg tccctttcca 540 aatgaaaata tctgttcagc aagttgcaaa gtacaacttt ttcaggtggt tttatttttt 600 ccccttttct aacctgatac tgttcttttt taagcaactg cttaaagact tctaccatgc 660 aaaaggctac tcaaaccatc ctcctttcac aatatcttgg attctacatg tgccaatgtt 720 aaacacccca ggtttcaatc tcaagctaaa cattgggtag accaagggct gtgctgtcaa 780 acagaagtga cagtcctcac tttggcagac aaagcttgct taaaccttct cttcagatcc 840 tgcatgttgg gtgattttgg ccgtggaata agagaggttc tcctcctctc aggggtgctg 900 gttatttgct gtttattgac ttctttacag aggagatgga aggcattgaa gacattatta 960 tagttttcac tgacagatac ttcatagaaa gtacagccca gcatattggc cagctgaagt 1020 ccctgctgag gctccacctc tttgatatgc aagagatcag cttgtttgcc acaat 1075 // ID JV172894; SV 1; linear; mRNA; TSA; VRT; 875 BP. XX AC JV172894; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15712.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-875 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-875 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; 02834c5db0855727091494eddc96fc98. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..875 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 875 BP; 262 A; 198 C; 178 G; 237 T; 0 other; tagaggaaat tgtccctgcc tagagcaggg ggctggaact aggtgatctt taagttccct 60 tccaacccaa acaattctat aaatggtctc cagatgaaca cttgccaaaa tctggcccat 120 actccttgca gataaattac cgaacttatt aaattttgat aattattttt tttcctaagc 180 taatacattc ttctgccact gactataccc tagtgaaaaa gccacagtga atcttctatc 240 actgagctct ggtaacttct ccagcttgca gcacactcag aaaaacaggg gttggaaggc 300 aatggtgcaa gggaatcttg ctagcacaag tcgacgtgtg caagtctctc ttaaatctct 360 caacaatttt gtttcccaca cacagtttcc ttcctgaagt ggttttgatg tagtgcagag 420 gagttcagca cagcaaaaag catcagcaag agactcaata taatgctttt caaagagcag 480 aggcaccttt tgttgctgca gacgttggac agcagctctg gctctgagca gggttcaatg 540 gagtcctgca ggaaagggct gagaggcaca caggcagcat gtcatgggtc tgtatttgca 600 taacgccgtg agaaaacttt ctgctgtgga tccctaccat ccggggaact gaaaaactga 660 actgaaaaaa cgccttcttc tatagagcag aataattaaa taacggtttg atacttcctg 720 acagatgaat aatggcaatg aaatttacag ttctagcacc gaaaggagtc tgtaatccca 780 gtttatctat tcaccagcca atcaattcac ctcctgtgct ccagtcaact gaagccaagc 840 taatacagaa gattaagtag ttttactcac tcctt 875 // ID JV172895; SV 1; linear; mRNA; TSA; VRT; 508 BP. XX AC JV172895; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15713.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-508 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-508 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; 98f8fb1d2b501c18554db5840f3a7563. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..508 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 508 BP; 167 A; 104 C; 97 G; 140 T; 0 other; gctattttct gtttcatatt tctcctcttt cccttcctcc taaggacctg ccagaaaaaa 60 taagcagctg aaataaatta tcaagaattt taacaatttt aataataatt ttattgcaaa 120 accaatgtgc tatgaataag ttttattgct cctctaaaat attcatggat ggctcaaaga 180 acaaagctcc atcagcccac ctggcagtct tcttaggagt accaataaag gaaaaagtag 240 ggtcatgcaa atgctcaacc agaaagcatt tttcaaaaat gcaattaggt agataggatc 300 aggaggagaa tgatacttta ctgaatgcca agttaatttg aagaagtgcc atcagtggtg 360 atccaagact tcaacaagaa ctgtgttacc taaggagaag gcagcccctt ccatggttca 420 gcagtcagac agacagacac gggcccttgc aaggtgccag gtctaatctg tcttacagag 480 tcttatctta tgcagcctgg caaagctg 508 // ID JV172896; SV 1; linear; mRNA; TSA; VRT; 1143 BP. XX AC JV172896; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15714.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-1143 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-1143 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; f5773a356d4cc8e0c5b3547f71b6df12. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..1143 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 1143 BP; 374 A; 288 C; 229 G; 252 T; 0 other; tcagtagaac aaccttccct tgctgctcca acagacacca aaccaagtgc aaggtatgca 60 gagcattttc agttcacagg gcagtgtcac ttgagcattc acaatctata acagacaaac 120 caggaaccat caaatttaat cagagatagc agcctgttcc tttggatcac accccactca 180 ttccataaag cccaaagagg ccggatctgt tctcaccaca tctcttttaa tcccaaagta 240 caaatcacat tagcagcact gctccatctg ttccagagtg caattttgac cctgagttta 300 cagtagtaga aaacttgaat ggaagattct agcagattcc tttgcatatt ggctgcatta 360 aacaattata atagaactat aaaaatccta gaaaaaacaa aaaataaccc acattccttg 420 ttcaagttct gcagaagaat ggagtgaaac ttccctcctg tgctttgact agaagagcag 480 agcaagtgtg gcttgaagga agcaaccaag agagatcaat cagatttgga acaaagcaac 540 aagaggagct ggcaaactgg agcacaacca gcaactccca gagactggat gccagagttg 600 ggaaggacag accaaagcta tggccaatgt ttgggaatct tcaagaggct ggaggcagcc 660 tggacatttc tctactaatt ggtgcaaaaa taacatctaa acctaaaggc attcattgct 720 cttcccatcc ctccttcagg gtgttcagtg aattccacaa gcatgtaact ggcacatgaa 780 ttccatgatg tttcagtgaa accagagctg gaaacatgcc aaggacaaac cacgaacctt 840 cagtggtttt ccaaactgac acccaatgtg tcaaatcaca gtcaggttgt gaacccaccc 900 aactgcccag tgctccactg gggagaaggg ttgcaaaagc tgtccagacc ctgcacagtg 960 cctcagacaa gcactgagaa aaatccacat ccatcccagg atcacagatg tccttcccac 1020 acttgcctaa ccggcagctg atcttgaaca aggaacatgc aaggccacag gcagaataaa 1080 tcatacgcct cggaagcagt aattcggtcc caaaatccag tgcaaatatt gtccggagat 1140 gcc 1143 // ID JV172897; SV 1; linear; mRNA; TSA; VRT; 469 BP. XX AC JV172897; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15715.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-469 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-469 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; f17f6830f18a4d0b45e8b751a99d224c. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..469 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 469 BP; 132 A; 86 C; 132 G; 119 T; 0 other; gttgaggaaa ataggaggtg gaggatttgg agaaatttac gatgcactgg acttgcttac 60 tcgggaaaat gttgcactga aggtcgaatc agctcagcag ccaaagcaag tgctgaaaat 120 ggaagtagct gtgttgaaga agctgcaagg aaaagatcat gtctgtagat tcataggatg 180 tggacggaat gacagattta actatgtggt catgcagttg cagggtcgga acttggcaga 240 cctgcgtcgt agccagtctc gagggacgtt caccattagt accactctgc ggcttgggaa 300 gcagatcttg gaatctattg aaagtattca ttctgtggga ttcctgcaca gggacataaa 360 accatcaaac ttcgcaatgg gacgttttcc aagcacctgt aggaagtgtt ttatgctgga 420 tttcggctta gcacggcaat ttaccaactc atgtggggat gtcagacca 469 // ID JV172898; SV 1; linear; mRNA; TSA; VRT; 1414 BP. XX AC JV172898; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15716.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-1414 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-1414 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; 195d045ecfd55089a4a8f8a8dd409afe. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..1414 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 1414 BP; 376 A; 325 C; 336 G; 377 T; 0 other; ggctgctttg tcaagaagaa agaggcagtg ctctgaggag atacctataa gaaacaccaa 60 gaagcctgtc ctgtctccag ccttatctcc tgttgattct tccaaaagaa ttttgagcag 120 agtttctcca gaggcagagg acttggtggg ggtgccacaa atctgttcat ctggttaatc 180 ttgtgattgt gagaagaccg atgagcaatg gcaagaggtc aagaagatga aggtcatgct 240 gctgagacct ggaacagctg ctttttgtgt gggacacagt gtgtgggcct tgcagagatc 300 tacaacagac tttggagaga aatgtgcgac caagccagcc agcttgtact ccttggatcc 360 taggcctgct ctgttggagg agagcattac tgatgcattt ctaagctctt catgctggga 420 cctggcaaag gaacacagta catatatatc cagagacaat ccttcagtgt gctccctttt 480 ccacccacca ctgggagcct tctctggaaa tgttctgtac tgccatccca gtgtgcttca 540 cattctataa atgctttcat gggggaaagg aaggattgtg tgcaaggctt tttgtggcat 600 caaggtgctc aactcagagg agagataagc actgctgatc tactgacttc aaggtctgtt 660 atattttcta aagttattcc tccagtactt tgagagtggt ctccttgtgt ggagactaat 720 caagtcaaaa tctgcctgtt caatttccac cccttagtcc tgttgcaaag tcagctgcac 780 atgaagcctt gccctggaga agacaaacac cccccacccc ccaggctttt ttgacacagt 840 tctgctgtgc atcccttcct cccttctgtg catgcagtag ctaatgtgct ggtggagtga 900 tcatcatgtc ccacaaagca gtactgcaga tttcatctcc ggccatcaaa caataaaagt 960 gggaagacag tgagatgcaa ggcagactgt gactgtgaag gtttcctgag tggtagtcag 1020 gagatattgg gctgcacaag acagtagtaa ttcacctaaa atgcaggagc tcctgacatt 1080 tcatagcagg atgtcaaaga caaggacctg ccacagccaa ctgtgggtgc caaatttagg 1140 gcatcccaag caccccagtc caggttcgtc ttctggaccc tttatctgat acatagcacc 1200 tcataagcaa agacttcagg aaggtcacac tccttgtcct tttccttcaa gaaaagaagt 1260 tattgaaaat tgagcaatga ttcattcaag tgtcctgcag tagttgctgc agccatggga 1320 ttaaggttac cctgctgcat ctaccttgta atcaacaatt tcagctcaga ttgagcaggt 1380 gggaatgttt ccataatgaa gagaacttca gtag 1414 // ID JV172899; SV 1; linear; mRNA; TSA; VRT; 989 BP. XX AC JV172899; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15717.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-989 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-989 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; a58df1864c5f0f890b89ef5f6643a364. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..989 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 989 BP; 247 A; 205 C; 244 G; 293 T; 0 other; cagcacttaa agtcctaggt atatgccgtg cattgagcgt ggtgatagag tttacagtgg 60 caactgagga gggtacagtt aatcgaatgt tgttcccaat cagaacctga gttgttgcag 120 aattggcagc agttacttgg tgactcagtg cactgtggga acttgaagtc tgcgttatat 180 ttgaaggctg taacaaggct gaacctgctg ttgacgatga acttgtatgg acaagtgctg 240 taggtgtagt actactgagg tgtaagccct tgtacactcc tgaggcctga agaatgccat 300 tcaccccaat tccaagcacc acatcatcct tcattttgaa tcccatcagc tgttctgatg 360 taaccaaagc tgaagcagca aattgagcac taacagaatc cagtgtcttg gaaacaaaac 420 cctgtgatgt gttggcagag gaattactat ttgcttgctg ttgatgaatt tgtgcaagct 480 gctgtttctg cattagtgcc agttgctgtt gatgttgctg gtattgttcg gctgtaaatg 540 caatatgtgc tgaaccactg ctacttttac tttgtataga ggtactgcat gtctgggtcc 600 cgggttgtgc tgtgcctgtt cgatttaaac ccctgtataa tttcctacag gagagttcat 660 cattgtcact gtcatgtagg gatggtgtcc gaggcctaaa atgccgccat ctacatgatt 720 tgatattgac tagtatctga ctgaggtctt ttgagaaaga tttgtccgag gtatttgttt 780 ctgaggtatt ggcaaattga ctgattgaag agtgttgcga tgaggaaaag ctttccaaat 840 ccaggtgatg aaatgcacta tcgtagtccg aatgcgctct gtccagtagc acccttccac 900 cacggccaac ccgtctccgt gccaaaccca atacacctct gggggacagt gagggtgtta 960 agcagtatct gtaacgcaca tctcctaat 989 // ID JV172900; SV 1; linear; mRNA; TSA; VRT; 386 BP. XX AC JV172900; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15718.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-386 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-386 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; 3b3ae57004310740df089985e31e6819. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..386 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 386 BP; 154 A; 79 C; 55 G; 98 T; 0 other; ccagcaaaga aagccgaagt caattcatac cactgactgc tataaataaa attcccacag 60 cagttctcat ggactgtata cagaactgca tgaggaaaag aggaaatggg tttatcacaa 120 ttccattttg atagcagtgg caacaaagtg taaacattct gcaataaaac ctttcattat 180 tacataaagt aacttcagca ttcactacag taagaatcca ctcctagatg atatccatgt 240 aggaaactta tcattaatgg agtaacaatc aagctgatta caagatcaga ttaaaaaata 300 caacgtttat atatatacac acacacacac acacacacac acacacacac acaaatatat 360 atatgtctag tttcaagtgt gtgtag 386 // ID JV172901; SV 1; linear; mRNA; TSA; VRT; 1091 BP. XX AC JV172901; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15719.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-1091 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-1091 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; dfbabc9709ea171a800d60343737a73e. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..1091 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 1091 BP; 245 A; 210 C; 223 G; 413 T; 0 other; tgtcttgttt tctgaacagc accattaatc actttatttc ttactcccta ctggtctatg 60 ttcacaagtc ttatgctcct ctttttcctt cttttctgta tttctcctct tttctttgac 120 ctcctcttcc ttcccttctg acttatcctg aagatgtctt ttcagtcttg gatcccgctt 180 actgatgtca gaaagcttag tgccttcaca ttcctggttt ttactgtctt tagtatcggg 240 cagcttattt ttcaaaggag atggcgattt agattttgct ttggactgtt caagttcttt 300 cttctgtgtt ttttcacttg cttttgattt ttctgacttc gttgagttct gtttttcagc 360 ctgtgctgtt ttgtttccct tggtctcaga ctgactggtc acactcggtg aaaattcttt 420 cctgtgagat tgatctttag tatgagaaga atgttgaccc attctattaa gccgaggatc 480 cctgttcact attttgatgt catgaagtgg aggacttggg gatggtttgt ttttttcaga 540 ttgcacagca gtttgatgag gtggtttaac tgtcatatga ggtgtgggag acatgtgttg 600 cttggaaggt gctggaactg aagctatact agatgatccc tgctgaacac taagagatac 660 agccaactgt gctttagtct gttccagctc cagctctagc tttttttgct gaagttctaa 720 caactgtttt tgctttgcaa gcaattgctg ccttatcagt tgctcctgtg tcaaattctt 780 ttgtatttca ggaacagctg gaggagtaga ggcaccagaa gtgacagcag aggtaggtgc 840 attagattcc tctggcgatt tatttaaaaa cttaggattc acatggatgc tagaagtatt 900 cacatttggg ggcagaggtt taattggcca ggcaggatct aatgagttga ctctgacatc 960 aagtgcatat agtttcttca aaggaaaaat atcatcccat gtggagcgta atttaaataa 1020 acttttccta gtattttcat ccaccttttc aaatacacaa ataaatgttg caactaggtt 1080 tttagttaaa t 1091 // ID JV172902; SV 1; linear; mRNA; TSA; VRT; 491 BP. XX AC JV172902; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15720.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-491 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-491 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; 6f1266791501ec441459c039638a4f80. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..491 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 491 BP; 130 A; 114 C; 128 G; 119 T; 0 other; tctgtgaaga gactaggaga aattttgaag ccaccttagg ttggctacaa gagcatgcat 60 gctccaggac atatggctta gggacccgct taccctggga tgagcagtgg ctgattgagt 120 ctctctctga ctccaccatc tacatggcct attacaccgt ggctcaccta ctgcaggggg 180 ggaacctcag gggccaagga gagtctcctc tgggcatcag ggcgcatcaa atgaccaaag 240 aggtttggga ttacatcttc ttcaagacag ctccgttccc taaaactgag attccaaagg 300 aaaagttgga tcagctgaag gaggagtttg agttttggta tcctgtggat ctcagagttt 360 ctggcaaaga tcttgttcca aatcacctgt cgtactacct ctacaatcat gtggccatgt 420 ggtcagagca aagggaaaaa tggccagtag ctgtgagagc caatggacat ctgctcctca 480 attccgaaaa g 491 // ID JV172903; SV 1; linear; mRNA; TSA; VRT; 384 BP. XX AC JV172903; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15721.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-384 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-384 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; 6fd5f08991bc35a009fb9846cb388f23. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..384 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 384 BP; 141 A; 73 C; 60 G; 110 T; 0 other; agtaccacat gtacactata cttttattgt atataaaata catactaaaa atactattca 60 gaattcaata gagtatacca gatatcagta gtaactggta ccaccattgc acgcaggagg 120 catattttcc ttgcaagcac ttacaaagtt tacaaatcag gactgaggtt cggtgacaca 180 tttttcatga gcctgagctt tagtgtttca tcgcatatca aatgggcttg aattacttct 240 ctcagctttt tccacacaac aggccttaac atataagaac cacacaacag tataagaaga 300 aataacagaa gtcacaactg catcagggga gaaataaatt ggccattata ttcagataaa 360 ctgtaataaa agagttttaa actt 384 // ID JV172904; SV 1; linear; mRNA; TSA; VRT; 661 BP. XX AC JV172904; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15722.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-661 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-661 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; 1a6a2c9f4a79e1f09d9b66f78a97b017. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..661 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 661 BP; 148 A; 197 C; 130 G; 186 T; 0 other; gggattgaca tctgttgtaa tgaaggaacg cctccagtcc accttcaatc ccatgctctt 60 cagatcctgg acagcaaggg gagggaaata atccagccag tgctcagctt cagaaaaact 120 gaccacttct tcatcagaca gacccaaaga cttcatgatc ccccactggt atttggaaga 180 gccagtcttg gcagcagcct tgctcttttt gccttttgct ttgtctttga tgataatttc 240 ttcctctttt ttaccagaat tttcttcctc ttcctcctcc tcatcaggaa attctggtgg 300 gcaaccatac aactccattt ctcttttcag cttatctgca caagccttga tgggcatccc 360 cgtgcagtgc agcccaaagg gaaacaggca gctcctcccc ttcagcctct ggtacccaac 420 ggcgaactca catttagata aggaaaacgt gtgtcccaga tgcaggcggc cattcatgta 480 agggtaagga aaggtaacaa agtacttccc tttgctcctc tggtccttcc tgtctgcagc 540 attgacctca aacacttgat cacgctccca cttctgctgg acctctcttt caatcttctt 600 caggaaatcc actttcgctg ttcctttacg ctccgccatg ttgccgcgcc tgacggggcc 660 c 661 // ID JV172905; SV 1; linear; mRNA; TSA; VRT; 2765 BP. XX AC JV172905; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15723.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-2765 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-2765 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; 692d70420e30ea72160ab1d22dbcc7e7. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..2765 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 2765 BP; 813 A; 526 C; 638 G; 788 T; 0 other; tccgggatcg gtggtgctcg ccggcttcat tcctcgggga ggccggagcg agggagagaa 60 cagtgtgggg agattcatca tcgaacgtgg gcttcgtgaa tagcctggtg ggttgtgctg 120 cagatctgca acatggaaaa gcaactgctc gaatcctcag aggagcgaac gtttcagtac 180 caagattctc tgccttccct gccagtacct cctcttgatg aatctttgag taaatatctc 240 gatgcagtga agccattcct taatcaagaa gaatatcaaa gaactgagga tatagttaaa 300 aaatttgaaa atggcattgg aaaagagttg catcagaaat tgctggaaag agctaaaatg 360 agaaggaatt ggctggagga ctggtggctg aatgtggctt atcttgatct tcgcatctcc 420 acacaaatcc tctgcaatat gggaggccct ggtccctata ttgagcacta ctggccaccc 480 aaggagggca ctcagataga cagagcgtgt ataaatatat ggcacaccct gaaatactgg 540 gatctgctac gagcagagaa ggttgccata gagagatctg gaaatactgt tctggacatg 600 aaccaatttc gaatgctctt ctgcacttgc aaaattcctg ggcttaccag agactctctc 660 agcagttatt ttaaaactga ggctgaaggt gaatgtccat ctcacttgat agtcctgtgt 720 cgaggtcgag tatttgcatt tgatgctatg catgaaggca gcatgctgac tcctccagag 780 attttcaggc aacttagcta tatacaggag agatgctaca gtgaaccaga tgggccagga 840 ctggcagccc taacaagcaa tgaaaggacc aaatgggcag agctacggga atacttgatt 900 catcttgatc caaagaactt aactcttctg gaaaaaattc agagaagttt gtttgtggtt 960 ggccttgatg attatagtcc tcatgcaact cctgaggact acactgagct tacaaggctg 1020 gggctagcag gtgatccgac tgtgcgctgg ggagataaat cctacaactg catattcttt 1080 tccaatggaa cctgtagtgc attctgtgat cattctcctt ttgatgccat ggctttaatt 1140 accatgttat cttatgctga taagaagatt gttgaaaatg agggaaaatg gaagggatca 1200 gataatgtga gagatattcc aaggccagag gaacttgtat tcacagtgga ttcaaaaatt 1260 atgaatgaaa tcggacatac taaagaattg tattacaaga aggtatctga cttgcagctg 1320 gtgtcctatg ccttcacatc ctttggcaaa gcattgatta gaaagaggaa acttcatcct 1380 gatacatttg tgcagcttgc ccttcagctt gcttattaca aatgccatgg acgtccgggc 1440 tgctgttacg aaactgccat gaccaggcga ttctatcacg gccgcacaga gaccataaga 1500 tcatgcactg tggaagcagt ggaatggtgc aagtccatgc tggatccttc tgagagtaat 1560 tatcaacggc tacaactgat gcataaggca tttgcaaagc acaataaact gaggaaagaa 1620 tgtgaaaatg gaagaggctt tgatcgtcat cttctgggtc tcctgctgat agcacaggag 1680 caaggactgc cagtgccaga cctgtacggg gataaggcct tcacagccag tggaggaggt 1740 gggaattttg tcctttcaac tagtctgact ggctacacta ggtttagtgg atctgcagtc 1800 cctatggtac aacatggcta tggctttttt tattccatta gagatgacag gatcgttact 1860 acctgctctt cttggaaatc ctgtccagag actgatgcag aagtgctgtg cagaaccctg 1920 ttccagtgct tccatgatgt gctgcagctg acacttacag ctcagctgta agcttgataa 1980 tgatgcaaga ggctttgcaa gctcacaagt tgtatgtagt acttaaaaac aaaatgctac 2040 tcaagagtac tgttaaattc aagacattta atggtctgta tgacatgttt atttttgtga 2100 gattacctgt ggtaacagta cccatttaag aataatgtag ccatttgcaa cagcaatgca 2160 agcagtagta ccttatctgt ttagaactat gcaatattaa aatatgccac aacaatgcaa 2220 acatagttag ggatgggatg ttgtagtgga aaattgatgg gagacttgta tttatgacct 2280 taatagtcac atgcagaata gtttgtagtc tactgatagg gtttatgcca gttgagcact 2340 taactgtgtt aaaagtaacc acactataat cttttgtgat tatgcttcct attcagagtg 2400 gttaatgaaa cagaatgcct ccatcaggtt atgtggtatt ttataagtta cctttcatct 2460 tttgctattg ggattatacc aaataaatga atccatgaat ggggatgttc ccactacatt 2520 tatagtatga gagcactaca gtttgaagta ttttggaaaa gaatcactca ataaagacag 2580 aaagcagcat gagtttcaga tttttcagtt ttcattctct agtgaactgt gaatatctac 2640 tgctttacac taataatgca caataaaagt aagcactgaa tacagtttga tatggttctc 2700 aggattttaa tacttgattt ctctgagcaa ctttgtattt tcctgttata gaaataaaat 2760 tttcc 2765 // ID JV172906; SV 1; linear; mRNA; TSA; VRT; 581 BP. XX AC JV172906; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15724.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-581 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-581 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; f63604e2adf4559ec1849a79f06917bd. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..581 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 581 BP; 185 A; 98 C; 104 G; 194 T; 0 other; tagtttctct aattaggttt gtcttgcctg aggaatgtgg ccatccactt ttttgtcaat 60 tttaattata aaccttctgt tgtgcactat aagcagcact ttgacaattg cattaagtta 120 ttccctggca aaattaacaa ccctttttta gtaaggagat gcatatagat accaaatcag 180 tcacaagaga cttatgctga aactgtgtct gcatctaata ggagagttca acatatgaca 240 gtgcttcaac tttgataatg attaagttgc aatgtggatt gtacctggaa ggaatgatga 300 cagctgtaat cctactaatt ccatgtaaag aaaccataaa aagtggtatt tcctactgaa 360 gtatcttttt tcagcccttt tgtatgatgc tctacagatg tattacaata gtacatggaa 420 agaaattgcc atccattgaa ggatttgctt aaatctgaac ctttcagcta gaggggaagc 480 tgcagtctct cttacaccta aatttttgag gtcaagggaa tagaaaaaaa tcctcttttg 540 tatatagctt aagtaagaca gttcatttaa aataagcatt t 581 // ID JV172907; SV 1; linear; mRNA; TSA; VRT; 967 BP. XX AC JV172907; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15725.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-967 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-967 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; 7df9c7770d3f10ce35ef9e8e2430b8e4. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..967 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 967 BP; 262 A; 277 C; 215 G; 213 T; 0 other; attaagtttg cttgctttat aaaaatcagg tgctttatcc taaaaccaga gcatgagggg 60 cattttgtgg gttatttcgc ttctaactag gaacagctaa tggctacatc ttaaaacaac 120 ctcctcttag atgtgctcca agtggattcc ttgggagagc atttgtggga gcaatccagg 180 gtctgtgttc tcccagagcc ctgtgcccag cagcaacagc aggagcaaac cgcggggagc 240 gagggatgga gcaacccagc gagcagagtg tgaaacccca cgggctgtgc ggtgagctgg 300 gccttctgtt acaccaccag cacatcctgg ggcacactta gggcacaatt gcatcatctg 360 tttaagacac atctccccac tcttgcagcc tgagaccaaa gtgtttaagg gtgacgctct 420 gagctccgga gcgctgcctg cccggccgtg tcctctctca tcctgggatt gttttgggag 480 ctgcctctct gaggcaagta ccaaaggtga aggatgttct ttgctgagct aataaataag 540 taaaaaaacc ccaacaacaa caataaaaac ccccaaacca tacaaactca aggtttcctt 600 cctgctgcac tcttcatctc ccgactcctt tcagttccct gggattcact tccacaccat 660 ccatcacact tgcacaaaca cacgttaagc acagctcaag aacagcctcc cgaggctgcc 720 actgacaaaa ctcacccctg gggctgtgca ctgccaatcc tctttaaaag ctgctccagg 780 actggtgctg cacacccaca cctcggggga gttttggaac acgtgggtgt ccagctcaga 840 caggtctatc aggtgtttct gagagactac accacacaaa aaaaccagca caacccacac 900 tccccaaagc agatgctctc cacactacgc tctgtcaaca caggaaaaaa aatctgggaa 960 aacaagg 967 // ID JV172908; SV 1; linear; mRNA; TSA; VRT; 1058 BP. XX AC JV172908; XX PR Project:PRJNA158927; XX DT 12-JUL-2012 (Rel. 113, Created) DT 12-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE TSA: Junco hyemalis isotig15726.JH, mRNA sequence. XX KW Transcriptome Shotgun Assembly; TSA. XX OS Junco hyemalis (dark-eyed junco) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Junco. XX RN [1] RC Publication Status: Online-Only RP 1-1058 RX DOI; 10.1186/1471-2164-13-305. RX PUBMED; 22776250. RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Mockatis K., RA Buechlein A., Podicheti R., Choi J.H., Lai Z., Colbourne J.K., Tang H., RA Ketterson E.D.; RT "De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco RT hyemalis): genomic tools for an ecological model system"; RL BMC Genomics 13:305-305(2012). XX RN [2] RP 1-1058 RA Peterson M.P., Whittaker D.J., Ambreth S., Sureshchandra S., Buechlein A., RA Podicheti R., Choi J.-H., Lai Z., Mockatis K., Colbourne J., Tang H., RA Ketterson E.; RT ; RL Submitted (24-APR-2012) to the INSDC. RL Biology, Center for the Integrative Study of Animal Behavior, Indiana RL University, 1001 E 3rd St, Bloomington, IN 47405, USA XX DR MD5; bddfc5f413045795813502b52d57e0d9. DR ENA; SRR490738. DR ENA; SRR490869. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler 2.3 CC Coverage :: 12x average CC Sequencing Technology :: 454 GS-FLX Titanium CC ##Assembly-Data-END## XX XX FH Key Location/Qualifiers FH FT source 1..1058 FT /organism="Junco hyemalis" FT /strain="carolinensis" FT /mol_type="mRNA" FT /tissue_type="whole brain; gonad; liver; pectoralis muscle; FT syrinx; beak; eye; gizzard; heart; kidney; lung; preen FT gland; skin; tongue" FT /db_xref="taxon:40217" XX SQ Sequence 1058 BP; 311 A; 258 C; 205 G; 284 T; 0 other; agccctgcag gtgtgtgggc tgctatttta gagccctttg gggctgagtg gcttggtagc 60 aagaaacccc atgacagtgt tttaactccc ctggctgctg caatctgtca atattgacat 120 attcccaaag aacattccca ttttggccaa ctggtatctt caaatgaaag caaacattca 180 tctggaaaac attcaattgg atctaggccc caccctgtgc tgcaccatcc cactgtttat 240 gcactgcagg ctggcatggc tttcacaaga aaattaatgc aacaggagcc tccactgaac 300 cagaaccagc tttggagtat taagacagca aaactctgtg caatttttat ccagcccagc 360 agtgccataa atgtgaccac agccagtcca caccagctcc tgtggtgatg atgggaactc 420 attgatcact ccaagttcca tggaaaccaa gctgcctgga agcaaatctg ccattttcct 480 cccatttaga ctcaactgat gagcaaaata acagagaaga aattgcatga attagacagt 540 aacagtccca attcacattt tactgcctct tcatgcctct taaggagaag caatgttgcc 600 tacatcaatc tgaagataaa gtcatttctg aacttaggaa accaaagttc acagctcctt 660 tttagtttca tttcctaagc atccacagat atgagattaa tcatagcatt gccttacaat 720 atgtcaccca aagttgagtt tcaggctttt taacagaaat actttgctcc attttacagt 780 taaaggaaca gaaacctggg aggttttaaa ttgctgtctt taagac