ID KV830161; SV 1; linear; genomic DNA; CON; PRO; 19027 BP. XX AC KV830161; LTQM01000000; XX PR Project:PRJNA296190; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Pseudomonas sp. HMSC061A10 genomic scaffold Scaffold539, whole genome DE shotgun sequence. XX KW . XX OS Pseudomonas sp. HMSC061A10 OC Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; OC Pseudomonadaceae; Pseudomonas; unclassified Pseudomonas. XX RN [1] RP 1-19027 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (09-FEB-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; 6118ae795212617bfc6a79882e4e3100. DR ENA; LTQM01000000; SET. DR ENA; LTQM00000000; SET. DR BioSample; SAMN04498589. XX CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 03/03/2016 04:47:50 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 5,844 CC CDS (total) :: 5,787 CC Genes (coding) :: 5,628 CC CDS (coding) :: 5,628 CC Genes (RNA) :: 57 CC rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC tRNAs :: 50 CC ncRNAs :: 4 CC Pseudo Genes (total) :: 159 CC Pseudo Genes (ambiguous residues) :: 0 of 159 CC Pseudo Genes (frameshifted) :: 6 of 159 CC Pseudo Genes (incomplete) :: 145 of 159 CC Pseudo Genes (internal stop) :: 8 of 159 CC CRISPR Arrays :: 4 CC Genome Coverage :: 63x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 63x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..19027 FT /organism="Pseudomonas sp. HMSC061A10" FT /host="Homo sapiens" FT /strain="HMSC061A10" FT /mol_type="genomic DNA" FT /isolation_source="trach aspirate" FT /db_xref="taxon:1715062" FT assembly_gap 1960..2059 FT /estimated_length=unknown FT /gap_type="within scaffold" FT /linkage_evidence="paired-ends" FT assembly_gap 17753..17852 FT /estimated_length=unknown FT /gap_type="within scaffold" FT /linkage_evidence="paired-ends" XX CO join(LTQM01000144.1:1..1959,gap(unk100),LTQM01000145.1:1..15693, CO gap(unk100),LTQM01000146.1:1..1175) // ID KV830162; SV 1; linear; genomic DNA; CON; PRO; 554444 BP. XX AC KV830162; LTQM01000000; XX PR Project:PRJNA296190; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Pseudomonas sp. HMSC061A10 genomic scaffold Scaffold547, whole genome DE shotgun sequence. XX KW . XX OS Pseudomonas sp. HMSC061A10 OC Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; OC Pseudomonadaceae; Pseudomonas; unclassified Pseudomonas. XX RN [1] RP 1-554444 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (09-FEB-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; 65871ea306978261ca19add27755c562. DR ENA; LTQM01000000; SET. DR ENA; LTQM00000000; SET. DR BioSample; SAMN04498589. XX CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 03/03/2016 04:47:50 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 5,844 CC CDS (total) :: 5,787 CC Genes (coding) :: 5,628 CC CDS (coding) :: 5,628 CC Genes (RNA) :: 57 CC rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC tRNAs :: 50 CC ncRNAs :: 4 CC Pseudo Genes (total) :: 159 CC Pseudo Genes (ambiguous residues) :: 0 of 159 CC Pseudo Genes (frameshifted) :: 6 of 159 CC Pseudo Genes (incomplete) :: 145 of 159 CC Pseudo Genes (internal stop) :: 8 of 159 CC CRISPR Arrays :: 4 CC Genome Coverage :: 63x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 63x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..554444 FT /organism="Pseudomonas sp. HMSC061A10" FT /host="Homo sapiens" FT /strain="HMSC061A10" FT /mol_type="genomic DNA" FT /isolation_source="trach aspirate" FT /db_xref="taxon:1715062" FT assembly_gap 159697..159796 FT /estimated_length=unknown FT /gap_type="within scaffold" FT /linkage_evidence="paired-ends" FT assembly_gap 200756..200855 FT /estimated_length=unknown FT /gap_type="within scaffold" FT /linkage_evidence="paired-ends" FT assembly_gap 332589..332688 FT /estimated_length=unknown FT /gap_type="within scaffold" FT /linkage_evidence="paired-ends" FT assembly_gap 380078..380177 FT /estimated_length=unknown FT /gap_type="within scaffold" FT /linkage_evidence="paired-ends" FT assembly_gap 403961..404060 FT /estimated_length=unknown FT /gap_type="within scaffold" FT /linkage_evidence="paired-ends" FT assembly_gap 454099..454198 FT /estimated_length=unknown FT /gap_type="within scaffold" FT /linkage_evidence="paired-ends" FT assembly_gap 535064..535163 FT /estimated_length=unknown FT /gap_type="within scaffold" FT /linkage_evidence="paired-ends" XX CO join(LTQM01000147.1:1..159696,gap(unk100),LTQM01000148.1:1..40959, CO gap(unk100),LTQM01000149.1:1..131733,gap(unk100),LTQM01000150.1:1..47389, CO gap(unk100),LTQM01000151.1:1..23783,gap(unk100),LTQM01000152.1:1..50038, CO gap(unk100),LTQM01000153.1:1..80865,gap(unk100),LTQM01000154.1:1..19281) // ID KV830163; SV 1; linear; genomic DNA; CON; PRO; 138540 BP. XX AC KV830163; LTQM01000000; XX PR Project:PRJNA296190; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Pseudomonas sp. HMSC061A10 genomic scaffold Scaffold556, whole genome DE shotgun sequence. XX KW . XX OS Pseudomonas sp. HMSC061A10 OC Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; OC Pseudomonadaceae; Pseudomonas; unclassified Pseudomonas. XX RN [1] RP 1-138540 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (09-FEB-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; 2d95fbdd58b15ad0f813c908e0594d04. DR ENA; LTQM01000000; SET. DR ENA; LTQM00000000; SET. DR BioSample; SAMN04498589. XX CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 03/03/2016 04:47:50 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 5,844 CC CDS (total) :: 5,787 CC Genes (coding) :: 5,628 CC CDS (coding) :: 5,628 CC Genes (RNA) :: 57 CC rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC tRNAs :: 50 CC ncRNAs :: 4 CC Pseudo Genes (total) :: 159 CC Pseudo Genes (ambiguous residues) :: 0 of 159 CC Pseudo Genes (frameshifted) :: 6 of 159 CC Pseudo Genes (incomplete) :: 145 of 159 CC Pseudo Genes (internal stop) :: 8 of 159 CC CRISPR Arrays :: 4 CC Genome Coverage :: 63x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 63x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..138540 FT /organism="Pseudomonas sp. HMSC061A10" FT /host="Homo sapiens" FT /strain="HMSC061A10" FT /mol_type="genomic DNA" FT /isolation_source="trach aspirate" FT /db_xref="taxon:1715062" FT assembly_gap 56150..56249 FT /estimated_length=unknown FT /gap_type="within scaffold" FT /linkage_evidence="paired-ends" FT assembly_gap 70025..70124 FT /estimated_length=unknown FT /gap_type="within scaffold" FT /linkage_evidence="paired-ends" FT assembly_gap 96238..96337 FT /estimated_length=unknown FT /gap_type="within scaffold" FT /linkage_evidence="paired-ends" XX CO join(LTQM01000155.1:1..56149,gap(unk100),LTQM01000156.1:1..13775, CO gap(unk100),LTQM01000157.1:1..26113,gap(unk100),LTQM01000158.1:1..42203) // ID KV830164; SV 1; linear; genomic DNA; CON; PRO; 388 BP. XX AC KV830164; LTQM01000000; XX PR Project:PRJNA296190; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Pseudomonas sp. HMSC061A10 genomic scaffold Scaffold559, whole genome DE shotgun sequence. XX KW . XX OS Pseudomonas sp. HMSC061A10 OC Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; OC Pseudomonadaceae; Pseudomonas; unclassified Pseudomonas. XX RN [1] RP 1-388 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (09-FEB-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; 8cc738c062dec76c255606b6d89a5be7. DR ENA; LTQM01000000; SET. DR ENA; LTQM00000000; SET. DR BioSample; SAMN04498589. XX CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 03/03/2016 04:47:50 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 5,844 CC CDS (total) :: 5,787 CC Genes (coding) :: 5,628 CC CDS (coding) :: 5,628 CC Genes (RNA) :: 57 CC rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC tRNAs :: 50 CC ncRNAs :: 4 CC Pseudo Genes (total) :: 159 CC Pseudo Genes (ambiguous residues) :: 0 of 159 CC Pseudo Genes (frameshifted) :: 6 of 159 CC Pseudo Genes (incomplete) :: 145 of 159 CC Pseudo Genes (internal stop) :: 8 of 159 CC CRISPR Arrays :: 4 CC Genome Coverage :: 63x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 63x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..388 FT /organism="Pseudomonas sp. HMSC061A10" FT /host="Homo sapiens" FT /strain="HMSC061A10" FT /mol_type="genomic DNA" FT /isolation_source="trach aspirate" FT /db_xref="taxon:1715062" XX CO join(LTQM01000159.1:1..388) // ID KV830165; SV 1; linear; genomic DNA; CON; PRO; 25520 BP. XX AC KV830165; LTQM01000000; XX PR Project:PRJNA296190; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Pseudomonas sp. HMSC061A10 genomic scaffold Scaffold580, whole genome DE shotgun sequence. XX KW . XX OS Pseudomonas sp. HMSC061A10 OC Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; OC Pseudomonadaceae; Pseudomonas; unclassified Pseudomonas. XX RN [1] RP 1-25520 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (09-FEB-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; e5c2bb53f5351f1ad4cf92af78ed2489. DR ENA; LTQM01000000; SET. DR ENA; LTQM00000000; SET. DR BioSample; SAMN04498589. XX CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 03/03/2016 04:47:50 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 5,844 CC CDS (total) :: 5,787 CC Genes (coding) :: 5,628 CC CDS (coding) :: 5,628 CC Genes (RNA) :: 57 CC rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC tRNAs :: 50 CC ncRNAs :: 4 CC Pseudo Genes (total) :: 159 CC Pseudo Genes (ambiguous residues) :: 0 of 159 CC Pseudo Genes (frameshifted) :: 6 of 159 CC Pseudo Genes (incomplete) :: 145 of 159 CC Pseudo Genes (internal stop) :: 8 of 159 CC CRISPR Arrays :: 4 CC Genome Coverage :: 63x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 63x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..25520 FT /organism="Pseudomonas sp. HMSC061A10" FT /host="Homo sapiens" FT /strain="HMSC061A10" FT /mol_type="genomic DNA" FT /isolation_source="trach aspirate" FT /db_xref="taxon:1715062" FT assembly_gap 347..446 FT /estimated_length=unknown FT /gap_type="within scaffold" FT /linkage_evidence="paired-ends" FT assembly_gap 1366..1465 FT /estimated_length=unknown FT /gap_type="within scaffold" FT /linkage_evidence="paired-ends" FT assembly_gap 3559..3658 FT /estimated_length=unknown FT /gap_type="within scaffold" FT /linkage_evidence="paired-ends" FT assembly_gap 3947..4046 FT /estimated_length=unknown FT /gap_type="within scaffold" FT /linkage_evidence="paired-ends" XX CO join(LTQM01000161.1:1..346,gap(unk100),LTQM01000162.1:1..919,gap(unk100), CO LTQM01000163.1:1..2093,gap(unk100),LTQM01000164.1:1..288,gap(unk100), CO LTQM01000165.1:1..21474) // ID KV830166; SV 1; linear; genomic DNA; CON; PRO; 306 BP. XX AC KV830166; LTQL01000000; XX PR Project:PRJNA296268; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Neisseria sp. HMSC061B04 genomic scaffold Scaffold2, whole genome shotgun DE sequence. XX KW . XX OS Neisseria sp. HMSC061B04 OC Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Neisseriaceae; OC Neisseria; unclassified Neisseria. XX RN [1] RP 1-306 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (09-FEB-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; cffacfc133691cc2a21b707ef9be1f04. DR ENA; LTQL01000000; SET. DR ENA; LTQL00000000; SET. DR BioSample; SAMN04498636. XX CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 03/03/2016 04:32:09 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 2,213 CC CDS (total) :: 2,154 CC Genes (coding) :: 2,082 CC CDS (coding) :: 2,082 CC Genes (RNA) :: 59 CC rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC tRNAs :: 52 CC ncRNAs :: 4 CC Pseudo Genes (total) :: 72 CC Pseudo Genes (ambiguous residues) :: 0 of 72 CC Pseudo Genes (frameshifted) :: 16 of 72 CC Pseudo Genes (incomplete) :: 57 of 72 CC Pseudo Genes (internal stop) :: 5 of 72 CC Pseudo Genes (multiple problems) :: 6 of 72 CC Genome Coverage :: 155x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 155x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..306 FT /organism="Neisseria sp. HMSC061B04" FT /host="Homo sapiens" FT /strain="HMSC061B04" FT /mol_type="genomic DNA" FT /isolation_source="sputum" FT /db_xref="taxon:1715140" XX CO join(LTQL01000028.1:1..306) // ID KV830167; SV 1; linear; genomic DNA; CON; PRO; 35738 BP. XX AC KV830167; LTQL01000000; XX PR Project:PRJNA296268; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Neisseria sp. HMSC061B04 genomic scaffold Scaffold3, whole genome shotgun DE sequence. XX KW . XX OS Neisseria sp. HMSC061B04 OC Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Neisseriaceae; OC Neisseria; unclassified Neisseria. XX RN [1] RP 1-35738 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (09-FEB-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; bb1bf16a6f8a79c77191ea2321ac6a61. DR ENA; LTQL01000000; SET. DR ENA; LTQL00000000; SET. DR BioSample; SAMN04498636. XX CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 03/03/2016 04:32:09 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 2,213 CC CDS (total) :: 2,154 CC Genes (coding) :: 2,082 CC CDS (coding) :: 2,082 CC Genes (RNA) :: 59 CC rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC tRNAs :: 52 CC ncRNAs :: 4 CC Pseudo Genes (total) :: 72 CC Pseudo Genes (ambiguous residues) :: 0 of 72 CC Pseudo Genes (frameshifted) :: 16 of 72 CC Pseudo Genes (incomplete) :: 57 of 72 CC Pseudo Genes (internal stop) :: 5 of 72 CC Pseudo Genes (multiple problems) :: 6 of 72 CC Genome Coverage :: 155x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 155x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..35738 FT /organism="Neisseria sp. HMSC061B04" FT /host="Homo sapiens" FT /strain="HMSC061B04" FT /mol_type="genomic DNA" FT /isolation_source="sputum" FT /db_xref="taxon:1715140" XX CO join(LTQL01000048.1:1..35738) // ID KV830168; SV 1; linear; genomic DNA; CON; PRO; 34371 BP. XX AC KV830168; LTQL01000000; XX PR Project:PRJNA296268; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Neisseria sp. HMSC061B04 genomic scaffold Scaffold4, whole genome shotgun DE sequence. XX KW . XX OS Neisseria sp. HMSC061B04 OC Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Neisseriaceae; OC Neisseria; unclassified Neisseria. XX RN [1] RP 1-34371 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (09-FEB-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; 422a1a88f9a4e5126972f0160b47ebd2. DR ENA; LTQL01000000; SET. DR ENA; LTQL00000000; SET. DR BioSample; SAMN04498636. XX CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 03/03/2016 04:32:09 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 2,213 CC CDS (total) :: 2,154 CC Genes (coding) :: 2,082 CC CDS (coding) :: 2,082 CC Genes (RNA) :: 59 CC rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC tRNAs :: 52 CC ncRNAs :: 4 CC Pseudo Genes (total) :: 72 CC Pseudo Genes (ambiguous residues) :: 0 of 72 CC Pseudo Genes (frameshifted) :: 16 of 72 CC Pseudo Genes (incomplete) :: 57 of 72 CC Pseudo Genes (internal stop) :: 5 of 72 CC Pseudo Genes (multiple problems) :: 6 of 72 CC Genome Coverage :: 155x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 155x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..34371 FT /organism="Neisseria sp. HMSC061B04" FT /host="Homo sapiens" FT /strain="HMSC061B04" FT /mol_type="genomic DNA" FT /isolation_source="sputum" FT /db_xref="taxon:1715140" XX CO join(LTQL01000049.1:1..34371) // ID KV830169; SV 1; linear; genomic DNA; CON; PRO; 23623 BP. XX AC KV830169; LTQL01000000; XX PR Project:PRJNA296268; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Neisseria sp. HMSC061B04 genomic scaffold Scaffold5, whole genome shotgun DE sequence. XX KW . XX OS Neisseria sp. HMSC061B04 OC Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Neisseriaceae; OC Neisseria; unclassified Neisseria. XX RN [1] RP 1-23623 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (09-FEB-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; f08800a0118dd8a761d56dce38539b62. DR ENA; LTQL01000000; SET. DR ENA; LTQL00000000; SET. DR BioSample; SAMN04498636. XX CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 03/03/2016 04:32:09 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 2,213 CC CDS (total) :: 2,154 CC Genes (coding) :: 2,082 CC CDS (coding) :: 2,082 CC Genes (RNA) :: 59 CC rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC tRNAs :: 52 CC ncRNAs :: 4 CC Pseudo Genes (total) :: 72 CC Pseudo Genes (ambiguous residues) :: 0 of 72 CC Pseudo Genes (frameshifted) :: 16 of 72 CC Pseudo Genes (incomplete) :: 57 of 72 CC Pseudo Genes (internal stop) :: 5 of 72 CC Pseudo Genes (multiple problems) :: 6 of 72 CC Genome Coverage :: 155x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 155x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..23623 FT /organism="Neisseria sp. HMSC061B04" FT /host="Homo sapiens" FT /strain="HMSC061B04" FT /mol_type="genomic DNA" FT /isolation_source="sputum" FT /db_xref="taxon:1715140" XX CO join(LTQL01000057.1:1..23623) // ID KV830170; SV 1; linear; genomic DNA; CON; PRO; 86192 BP. XX AC KV830170; LTQL01000000; XX PR Project:PRJNA296268; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Neisseria sp. HMSC061B04 genomic scaffold Scaffold6, whole genome shotgun DE sequence. XX KW . XX OS Neisseria sp. HMSC061B04 OC Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Neisseriaceae; OC Neisseria; unclassified Neisseria. XX RN [1] RP 1-86192 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (09-FEB-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; 2320ba61bdd29c585d44c66603976bd7. DR ENA; LTQL01000000; SET. DR ENA; LTQL00000000; SET. DR BioSample; SAMN04498636. XX CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 03/03/2016 04:32:09 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 2,213 CC CDS (total) :: 2,154 CC Genes (coding) :: 2,082 CC CDS (coding) :: 2,082 CC Genes (RNA) :: 59 CC rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC tRNAs :: 52 CC ncRNAs :: 4 CC Pseudo Genes (total) :: 72 CC Pseudo Genes (ambiguous residues) :: 0 of 72 CC Pseudo Genes (frameshifted) :: 16 of 72 CC Pseudo Genes (incomplete) :: 57 of 72 CC Pseudo Genes (internal stop) :: 5 of 72 CC Pseudo Genes (multiple problems) :: 6 of 72 CC Genome Coverage :: 155x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 155x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..86192 FT /organism="Neisseria sp. HMSC061B04" FT /host="Homo sapiens" FT /strain="HMSC061B04" FT /mol_type="genomic DNA" FT /isolation_source="sputum" FT /db_xref="taxon:1715140" XX CO join(LTQL01000067.1:1..86192) // ID KV830171; SV 1; linear; genomic DNA; CON; PRO; 717 BP. XX AC KV830171; LTQL01000000; XX PR Project:PRJNA296268; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Neisseria sp. HMSC061B04 genomic scaffold Scaffold7, whole genome shotgun DE sequence. XX KW . XX OS Neisseria sp. HMSC061B04 OC Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Neisseriaceae; OC Neisseria; unclassified Neisseria. XX RN [1] RP 1-717 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (09-FEB-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; e402bb109d7f12b85fc0be17cf985e38. DR ENA; LTQL01000000; SET. DR ENA; LTQL00000000; SET. DR BioSample; SAMN04498636. XX CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 03/03/2016 04:32:09 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 2,213 CC CDS (total) :: 2,154 CC Genes (coding) :: 2,082 CC CDS (coding) :: 2,082 CC Genes (RNA) :: 59 CC rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC tRNAs :: 52 CC ncRNAs :: 4 CC Pseudo Genes (total) :: 72 CC Pseudo Genes (ambiguous residues) :: 0 of 72 CC Pseudo Genes (frameshifted) :: 16 of 72 CC Pseudo Genes (incomplete) :: 57 of 72 CC Pseudo Genes (internal stop) :: 5 of 72 CC Pseudo Genes (multiple problems) :: 6 of 72 CC Genome Coverage :: 155x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 155x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..717 FT /organism="Neisseria sp. HMSC061B04" FT /host="Homo sapiens" FT /strain="HMSC061B04" FT /mol_type="genomic DNA" FT /isolation_source="sputum" FT /db_xref="taxon:1715140" XX CO join(LTQL01000078.1:1..717) // ID KV830172; SV 1; linear; genomic DNA; CON; PRO; 6157 BP. XX AC KV830172; LTQL01000000; XX PR Project:PRJNA296268; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Neisseria sp. HMSC061B04 genomic scaffold Scaffold8, whole genome shotgun DE sequence. XX KW . XX OS Neisseria sp. HMSC061B04 OC Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Neisseriaceae; OC Neisseria; unclassified Neisseria. XX RN [1] RP 1-6157 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (09-FEB-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; e33453ecb3b5670b11d171404a14bbff. DR ENA; LTQL01000000; SET. DR ENA; LTQL00000000; SET. DR BioSample; SAMN04498636. XX CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 03/03/2016 04:32:09 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 2,213 CC CDS (total) :: 2,154 CC Genes (coding) :: 2,082 CC CDS (coding) :: 2,082 CC Genes (RNA) :: 59 CC rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC tRNAs :: 52 CC ncRNAs :: 4 CC Pseudo Genes (total) :: 72 CC Pseudo Genes (ambiguous residues) :: 0 of 72 CC Pseudo Genes (frameshifted) :: 16 of 72 CC Pseudo Genes (incomplete) :: 57 of 72 CC Pseudo Genes (internal stop) :: 5 of 72 CC Pseudo Genes (multiple problems) :: 6 of 72 CC Genome Coverage :: 155x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 155x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..6157 FT /organism="Neisseria sp. HMSC061B04" FT /host="Homo sapiens" FT /strain="HMSC061B04" FT /mol_type="genomic DNA" FT /isolation_source="sputum" FT /db_xref="taxon:1715140" XX CO join(LTQL01000083.1:1..6157) // ID KV830173; SV 1; linear; genomic DNA; CON; PRO; 100830 BP. XX AC KV830173; LTQL01000000; XX PR Project:PRJNA296268; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Neisseria sp. HMSC061B04 genomic scaffold Scaffold12, whole genome shotgun DE sequence. XX KW . XX OS Neisseria sp. HMSC061B04 OC Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Neisseriaceae; OC Neisseria; unclassified Neisseria. XX RN [1] RP 1-100830 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (09-FEB-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; 6a2f92eb3654ce84c18cc704cba2e69e. DR ENA; LTQL01000000; SET. DR ENA; LTQL00000000; SET. DR BioSample; SAMN04498636. XX CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 03/03/2016 04:32:09 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 2,213 CC CDS (total) :: 2,154 CC Genes (coding) :: 2,082 CC CDS (coding) :: 2,082 CC Genes (RNA) :: 59 CC rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC tRNAs :: 52 CC ncRNAs :: 4 CC Pseudo Genes (total) :: 72 CC Pseudo Genes (ambiguous residues) :: 0 of 72 CC Pseudo Genes (frameshifted) :: 16 of 72 CC Pseudo Genes (incomplete) :: 57 of 72 CC Pseudo Genes (internal stop) :: 5 of 72 CC Pseudo Genes (multiple problems) :: 6 of 72 CC Genome Coverage :: 155x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 155x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..100830 FT /organism="Neisseria sp. HMSC061B04" FT /host="Homo sapiens" FT /strain="HMSC061B04" FT /mol_type="genomic DNA" FT /isolation_source="sputum" FT /db_xref="taxon:1715140" FT assembly_gap 30725..30824 FT /estimated_length=unknown FT /gap_type="within scaffold" FT /linkage_evidence="paired-ends" XX CO join(LTQL01000005.1:1..30724,gap(unk100),LTQL01000006.1:1..70006) // ID KV830174; SV 1; linear; genomic DNA; CON; PRO; 12142 BP. XX AC KV830174; LTQL01000000; XX PR Project:PRJNA296268; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Neisseria sp. HMSC061B04 genomic scaffold Scaffold13, whole genome shotgun DE sequence. XX KW . XX OS Neisseria sp. HMSC061B04 OC Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Neisseriaceae; OC Neisseria; unclassified Neisseria. XX RN [1] RP 1-12142 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (09-FEB-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; 1b8c9fec935d7768abae27eab61e98a7. DR ENA; LTQL01000000; SET. DR ENA; LTQL00000000; SET. DR BioSample; SAMN04498636. XX CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 03/03/2016 04:32:09 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 2,213 CC CDS (total) :: 2,154 CC Genes (coding) :: 2,082 CC CDS (coding) :: 2,082 CC Genes (RNA) :: 59 CC rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC tRNAs :: 52 CC ncRNAs :: 4 CC Pseudo Genes (total) :: 72 CC Pseudo Genes (ambiguous residues) :: 0 of 72 CC Pseudo Genes (frameshifted) :: 16 of 72 CC Pseudo Genes (incomplete) :: 57 of 72 CC Pseudo Genes (internal stop) :: 5 of 72 CC Pseudo Genes (multiple problems) :: 6 of 72 CC Genome Coverage :: 155x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 155x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..12142 FT /organism="Neisseria sp. HMSC061B04" FT /host="Homo sapiens" FT /strain="HMSC061B04" FT /mol_type="genomic DNA" FT /isolation_source="sputum" FT /db_xref="taxon:1715140" XX CO join(LTQL01000008.1:1..12142) // ID KV830175; SV 1; linear; genomic DNA; CON; PRO; 96810 BP. XX AC KV830175; LTQL01000000; XX PR Project:PRJNA296268; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Neisseria sp. HMSC061B04 genomic scaffold Scaffold14, whole genome shotgun DE sequence. XX KW . XX OS Neisseria sp. HMSC061B04 OC Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Neisseriaceae; OC Neisseria; unclassified Neisseria. XX RN [1] RP 1-96810 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (09-FEB-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; 69f209233c5ad0e7206c8fb6f5620b57. DR ENA; LTQL01000000; SET. DR ENA; LTQL00000000; SET. DR BioSample; SAMN04498636. XX CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 03/03/2016 04:32:09 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 2,213 CC CDS (total) :: 2,154 CC Genes (coding) :: 2,082 CC CDS (coding) :: 2,082 CC Genes (RNA) :: 59 CC rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC tRNAs :: 52 CC ncRNAs :: 4 CC Pseudo Genes (total) :: 72 CC Pseudo Genes (ambiguous residues) :: 0 of 72 CC Pseudo Genes (frameshifted) :: 16 of 72 CC Pseudo Genes (incomplete) :: 57 of 72 CC Pseudo Genes (internal stop) :: 5 of 72 CC Pseudo Genes (multiple problems) :: 6 of 72 CC Genome Coverage :: 155x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 155x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..96810 FT /organism="Neisseria sp. HMSC061B04" FT /host="Homo sapiens" FT /strain="HMSC061B04" FT /mol_type="genomic DNA" FT /isolation_source="sputum" FT /db_xref="taxon:1715140" XX CO join(LTQL01000011.1:1..96810) // ID KV830176; SV 1; linear; genomic DNA; CON; PRO; 19048 BP. XX AC KV830176; LTQL01000000; XX PR Project:PRJNA296268; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Neisseria sp. HMSC061B04 genomic scaffold Scaffold16, whole genome shotgun DE sequence. XX KW . XX OS Neisseria sp. HMSC061B04 OC Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Neisseriaceae; OC Neisseria; unclassified Neisseria. XX RN [1] RP 1-19048 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (09-FEB-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; 70f17d9d593a3ca10a964b3b49ba6ef5. DR ENA; LTQL01000000; SET. DR ENA; LTQL00000000; SET. DR BioSample; SAMN04498636. XX CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 03/03/2016 04:32:09 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 2,213 CC CDS (total) :: 2,154 CC Genes (coding) :: 2,082 CC CDS (coding) :: 2,082 CC Genes (RNA) :: 59 CC rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC tRNAs :: 52 CC ncRNAs :: 4 CC Pseudo Genes (total) :: 72 CC Pseudo Genes (ambiguous residues) :: 0 of 72 CC Pseudo Genes (frameshifted) :: 16 of 72 CC Pseudo Genes (incomplete) :: 57 of 72 CC Pseudo Genes (internal stop) :: 5 of 72 CC Pseudo Genes (multiple problems) :: 6 of 72 CC Genome Coverage :: 155x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 155x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..19048 FT /organism="Neisseria sp. HMSC061B04" FT /host="Homo sapiens" FT /strain="HMSC061B04" FT /mol_type="genomic DNA" FT /isolation_source="sputum" FT /db_xref="taxon:1715140" XX CO join(LTQL01000018.1:1..19048) // ID KV830177; SV 1; linear; genomic DNA; CON; PRO; 76207 BP. XX AC KV830177; LTQL01000000; XX PR Project:PRJNA296268; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Neisseria sp. HMSC061B04 genomic scaffold Scaffold17, whole genome shotgun DE sequence. XX KW . XX OS Neisseria sp. HMSC061B04 OC Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Neisseriaceae; OC Neisseria; unclassified Neisseria. XX RN [1] RP 1-76207 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (09-FEB-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; c7b19a2f7c739332b2307ecc1339bc2c. DR ENA; LTQL01000000; SET. DR ENA; LTQL00000000; SET. DR BioSample; SAMN04498636. XX CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 03/03/2016 04:32:09 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 2,213 CC CDS (total) :: 2,154 CC Genes (coding) :: 2,082 CC CDS (coding) :: 2,082 CC Genes (RNA) :: 59 CC rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC tRNAs :: 52 CC ncRNAs :: 4 CC Pseudo Genes (total) :: 72 CC Pseudo Genes (ambiguous residues) :: 0 of 72 CC Pseudo Genes (frameshifted) :: 16 of 72 CC Pseudo Genes (incomplete) :: 57 of 72 CC Pseudo Genes (internal stop) :: 5 of 72 CC Pseudo Genes (multiple problems) :: 6 of 72 CC Genome Coverage :: 155x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 155x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..76207 FT /organism="Neisseria sp. HMSC061B04" FT /host="Homo sapiens" FT /strain="HMSC061B04" FT /mol_type="genomic DNA" FT /isolation_source="sputum" FT /db_xref="taxon:1715140" FT assembly_gap 48352..48451 FT /estimated_length=unknown FT /gap_type="within scaffold" FT /linkage_evidence="paired-ends" XX CO join(LTQL01000019.1:1..48351,gap(unk100),LTQL01000020.1:1..27756) // ID KV830178; SV 1; linear; genomic DNA; CON; PRO; 86998 BP. XX AC KV830178; LTQL01000000; XX PR Project:PRJNA296268; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Neisseria sp. HMSC061B04 genomic scaffold Scaffold22, whole genome shotgun DE sequence. XX KW . XX OS Neisseria sp. HMSC061B04 OC Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Neisseriaceae; OC Neisseria; unclassified Neisseria. XX RN [1] RP 1-86998 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (09-FEB-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; 71ea3390ce02190be7ce00dc90a388cb. DR ENA; LTQL01000000; SET. DR ENA; LTQL00000000; SET. DR BioSample; SAMN04498636. XX CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 03/03/2016 04:32:09 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 2,213 CC CDS (total) :: 2,154 CC Genes (coding) :: 2,082 CC CDS (coding) :: 2,082 CC Genes (RNA) :: 59 CC rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC tRNAs :: 52 CC ncRNAs :: 4 CC Pseudo Genes (total) :: 72 CC Pseudo Genes (ambiguous residues) :: 0 of 72 CC Pseudo Genes (frameshifted) :: 16 of 72 CC Pseudo Genes (incomplete) :: 57 of 72 CC Pseudo Genes (internal stop) :: 5 of 72 CC Pseudo Genes (multiple problems) :: 6 of 72 CC Genome Coverage :: 155x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 155x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..86998 FT /organism="Neisseria sp. HMSC061B04" FT /host="Homo sapiens" FT /strain="HMSC061B04" FT /mol_type="genomic DNA" FT /isolation_source="sputum" FT /db_xref="taxon:1715140" XX CO join(LTQL01000033.1:1..86998) // ID KV830179; SV 1; linear; genomic DNA; CON; PRO; 22186 BP. XX AC KV830179; LTQL01000000; XX PR Project:PRJNA296268; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Neisseria sp. HMSC061B04 genomic scaffold Scaffold23, whole genome shotgun DE sequence. XX KW . XX OS Neisseria sp. HMSC061B04 OC Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Neisseriaceae; OC Neisseria; unclassified Neisseria. XX RN [1] RP 1-22186 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (09-FEB-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; 657a0b69370820e2ec386ceaeb17014a. DR ENA; LTQL01000000; SET. DR ENA; LTQL00000000; SET. DR BioSample; SAMN04498636. XX CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 03/03/2016 04:32:09 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 2,213 CC CDS (total) :: 2,154 CC Genes (coding) :: 2,082 CC CDS (coding) :: 2,082 CC Genes (RNA) :: 59 CC rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC tRNAs :: 52 CC ncRNAs :: 4 CC Pseudo Genes (total) :: 72 CC Pseudo Genes (ambiguous residues) :: 0 of 72 CC Pseudo Genes (frameshifted) :: 16 of 72 CC Pseudo Genes (incomplete) :: 57 of 72 CC Pseudo Genes (internal stop) :: 5 of 72 CC Pseudo Genes (multiple problems) :: 6 of 72 CC Genome Coverage :: 155x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 155x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..22186 FT /organism="Neisseria sp. HMSC061B04" FT /host="Homo sapiens" FT /strain="HMSC061B04" FT /mol_type="genomic DNA" FT /isolation_source="sputum" FT /db_xref="taxon:1715140" XX CO join(LTQL01000034.1:1..22186) // ID KV830180; SV 1; linear; genomic DNA; CON; PRO; 230506 BP. XX AC KV830180; LTQL01000000; XX PR Project:PRJNA296268; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Neisseria sp. HMSC061B04 genomic scaffold Scaffold24, whole genome shotgun DE sequence. XX KW . XX OS Neisseria sp. HMSC061B04 OC Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Neisseriaceae; OC Neisseria; unclassified Neisseria. XX RN [1] RP 1-230506 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (09-FEB-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; 4a3e6cc037f49298a74e8b1d2529b486. DR ENA; LTQL01000000; SET. DR ENA; LTQL00000000; SET. DR BioSample; SAMN04498636. XX CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 03/03/2016 04:32:09 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 2,213 CC CDS (total) :: 2,154 CC Genes (coding) :: 2,082 CC CDS (coding) :: 2,082 CC Genes (RNA) :: 59 CC rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC tRNAs :: 52 CC ncRNAs :: 4 CC Pseudo Genes (total) :: 72 CC Pseudo Genes (ambiguous residues) :: 0 of 72 CC Pseudo Genes (frameshifted) :: 16 of 72 CC Pseudo Genes (incomplete) :: 57 of 72 CC Pseudo Genes (internal stop) :: 5 of 72 CC Pseudo Genes (multiple problems) :: 6 of 72 CC Genome Coverage :: 155x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 155x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..230506 FT /organism="Neisseria sp. HMSC061B04" FT /host="Homo sapiens" FT /strain="HMSC061B04" FT /mol_type="genomic DNA" FT /isolation_source="sputum" FT /db_xref="taxon:1715140" FT assembly_gap 117855..117954 FT /estimated_length=unknown FT /gap_type="within scaffold" FT /linkage_evidence="paired-ends" FT assembly_gap 207000..207099 FT /estimated_length=unknown FT /gap_type="within scaffold" FT /linkage_evidence="paired-ends" XX CO join(LTQL01000036.1:1..117854,gap(unk100),LTQL01000037.1:1..89045, CO gap(unk100),LTQL01000038.1:1..23407) // ID KV830181; SV 1; linear; genomic DNA; CON; PRO; 6220 BP. XX AC KV830181; LTQL01000000; XX PR Project:PRJNA296268; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Neisseria sp. HMSC061B04 genomic scaffold Scaffold25, whole genome shotgun DE sequence. XX KW . XX OS Neisseria sp. HMSC061B04 OC Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Neisseriaceae; OC Neisseria; unclassified Neisseria. XX RN [1] RP 1-6220 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (09-FEB-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; cbea9b890d5a072da74e24816eb2addf. DR ENA; LTQL01000000; SET. DR ENA; LTQL00000000; SET. DR BioSample; SAMN04498636. XX CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 03/03/2016 04:32:09 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 2,213 CC CDS (total) :: 2,154 CC Genes (coding) :: 2,082 CC CDS (coding) :: 2,082 CC Genes (RNA) :: 59 CC rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC tRNAs :: 52 CC ncRNAs :: 4 CC Pseudo Genes (total) :: 72 CC Pseudo Genes (ambiguous residues) :: 0 of 72 CC Pseudo Genes (frameshifted) :: 16 of 72 CC Pseudo Genes (incomplete) :: 57 of 72 CC Pseudo Genes (internal stop) :: 5 of 72 CC Pseudo Genes (multiple problems) :: 6 of 72 CC Genome Coverage :: 155x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 155x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..6220 FT /organism="Neisseria sp. HMSC061B04" FT /host="Homo sapiens" FT /strain="HMSC061B04" FT /mol_type="genomic DNA" FT /isolation_source="sputum" FT /db_xref="taxon:1715140" XX CO join(LTQL01000041.1:1..6220) // ID KV830182; SV 1; linear; genomic DNA; CON; PRO; 326 BP. XX AC KV830182; LTQL01000000; XX PR Project:PRJNA296268; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Neisseria sp. HMSC061B04 genomic scaffold Scaffold43, whole genome shotgun DE sequence. XX KW . XX OS Neisseria sp. HMSC061B04 OC Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Neisseriaceae; OC Neisseria; unclassified Neisseria. XX RN [1] RP 1-326 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (09-FEB-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; 7ef96f4ac24c2eca0fd60e22dba6ce1b. DR ENA; LTQL01000000; SET. DR ENA; LTQL00000000; SET. DR BioSample; SAMN04498636. XX CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 03/03/2016 04:32:09 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 2,213 CC CDS (total) :: 2,154 CC Genes (coding) :: 2,082 CC CDS (coding) :: 2,082 CC Genes (RNA) :: 59 CC rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC tRNAs :: 52 CC ncRNAs :: 4 CC Pseudo Genes (total) :: 72 CC Pseudo Genes (ambiguous residues) :: 0 of 72 CC Pseudo Genes (frameshifted) :: 16 of 72 CC Pseudo Genes (incomplete) :: 57 of 72 CC Pseudo Genes (internal stop) :: 5 of 72 CC Pseudo Genes (multiple problems) :: 6 of 72 CC Genome Coverage :: 155x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 155x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..326 FT /organism="Neisseria sp. HMSC061B04" FT /host="Homo sapiens" FT /strain="HMSC061B04" FT /mol_type="genomic DNA" FT /isolation_source="sputum" FT /db_xref="taxon:1715140" XX CO join(LTQL01000050.1:1..326) // ID KV830183; SV 1; linear; genomic DNA; CON; PRO; 15602 BP. XX AC KV830183; LTQL01000000; XX PR Project:PRJNA296268; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Neisseria sp. HMSC061B04 genomic scaffold Scaffold44, whole genome shotgun DE sequence. XX KW . XX OS Neisseria sp. HMSC061B04 OC Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Neisseriaceae; OC Neisseria; unclassified Neisseria. XX RN [1] RP 1-15602 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (09-FEB-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; 9d8c1a72124639872d72e6779d17a4db. DR ENA; LTQL01000000; SET. DR ENA; LTQL00000000; SET. DR BioSample; SAMN04498636. XX CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 03/03/2016 04:32:09 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 2,213 CC CDS (total) :: 2,154 CC Genes (coding) :: 2,082 CC CDS (coding) :: 2,082 CC Genes (RNA) :: 59 CC rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC tRNAs :: 52 CC ncRNAs :: 4 CC Pseudo Genes (total) :: 72 CC Pseudo Genes (ambiguous residues) :: 0 of 72 CC Pseudo Genes (frameshifted) :: 16 of 72 CC Pseudo Genes (incomplete) :: 57 of 72 CC Pseudo Genes (internal stop) :: 5 of 72 CC Pseudo Genes (multiple problems) :: 6 of 72 CC Genome Coverage :: 155x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 155x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..15602 FT /organism="Neisseria sp. HMSC061B04" FT /host="Homo sapiens" FT /strain="HMSC061B04" FT /mol_type="genomic DNA" FT /isolation_source="sputum" FT /db_xref="taxon:1715140" XX CO join(LTQL01000051.1:1..15602) // ID KV830184; SV 1; linear; genomic DNA; CON; PRO; 46054 BP. XX AC KV830184; LTQL01000000; XX PR Project:PRJNA296268; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Neisseria sp. HMSC061B04 genomic scaffold Scaffold45, whole genome shotgun DE sequence. XX KW . XX OS Neisseria sp. HMSC061B04 OC Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Neisseriaceae; OC Neisseria; unclassified Neisseria. XX RN [1] RP 1-46054 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (09-FEB-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; fad3c86bcfcb6765581a7d13da02ad76. DR ENA; LTQL01000000; SET. DR ENA; LTQL00000000; SET. DR BioSample; SAMN04498636. XX CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 03/03/2016 04:32:09 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 2,213 CC CDS (total) :: 2,154 CC Genes (coding) :: 2,082 CC CDS (coding) :: 2,082 CC Genes (RNA) :: 59 CC rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC tRNAs :: 52 CC ncRNAs :: 4 CC Pseudo Genes (total) :: 72 CC Pseudo Genes (ambiguous residues) :: 0 of 72 CC Pseudo Genes (frameshifted) :: 16 of 72 CC Pseudo Genes (incomplete) :: 57 of 72 CC Pseudo Genes (internal stop) :: 5 of 72 CC Pseudo Genes (multiple problems) :: 6 of 72 CC Genome Coverage :: 155x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 155x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..46054 FT /organism="Neisseria sp. HMSC061B04" FT /host="Homo sapiens" FT /strain="HMSC061B04" FT /mol_type="genomic DNA" FT /isolation_source="sputum" FT /db_xref="taxon:1715140" XX CO join(LTQL01000052.1:1..46054) // ID KV830185; SV 1; linear; genomic DNA; CON; PRO; 21894 BP. XX AC KV830185; LTQL01000000; XX PR Project:PRJNA296268; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Neisseria sp. HMSC061B04 genomic scaffold Scaffold46, whole genome shotgun DE sequence. XX KW . XX OS Neisseria sp. HMSC061B04 OC Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Neisseriaceae; OC Neisseria; unclassified Neisseria. XX RN [1] RP 1-21894 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (09-FEB-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; 0d90764cb1bcd45de2ffa40c3fabc642. DR ENA; LTQL01000000; SET. DR ENA; LTQL00000000; SET. DR BioSample; SAMN04498636. XX CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 03/03/2016 04:32:09 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 2,213 CC CDS (total) :: 2,154 CC Genes (coding) :: 2,082 CC CDS (coding) :: 2,082 CC Genes (RNA) :: 59 CC rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC tRNAs :: 52 CC ncRNAs :: 4 CC Pseudo Genes (total) :: 72 CC Pseudo Genes (ambiguous residues) :: 0 of 72 CC Pseudo Genes (frameshifted) :: 16 of 72 CC Pseudo Genes (incomplete) :: 57 of 72 CC Pseudo Genes (internal stop) :: 5 of 72 CC Pseudo Genes (multiple problems) :: 6 of 72 CC Genome Coverage :: 155x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 155x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..21894 FT /organism="Neisseria sp. HMSC061B04" FT /host="Homo sapiens" FT /strain="HMSC061B04" FT /mol_type="genomic DNA" FT /isolation_source="sputum" FT /db_xref="taxon:1715140" XX CO join(LTQL01000053.1:1..21894) // ID KV830186; SV 1; linear; genomic DNA; CON; PRO; 341 BP. XX AC KV830186; LTQL01000000; XX PR Project:PRJNA296268; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Neisseria sp. HMSC061B04 genomic scaffold Scaffold47, whole genome shotgun DE sequence. XX KW . XX OS Neisseria sp. HMSC061B04 OC Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Neisseriaceae; OC Neisseria; unclassified Neisseria. XX RN [1] RP 1-341 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (09-FEB-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; 4d858c464d81a1e6c615e783d05ca2f1. DR ENA; LTQL01000000; SET. DR ENA; LTQL00000000; SET. DR BioSample; SAMN04498636. XX CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 03/03/2016 04:32:09 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 2,213 CC CDS (total) :: 2,154 CC Genes (coding) :: 2,082 CC CDS (coding) :: 2,082 CC Genes (RNA) :: 59 CC rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC tRNAs :: 52 CC ncRNAs :: 4 CC Pseudo Genes (total) :: 72 CC Pseudo Genes (ambiguous residues) :: 0 of 72 CC Pseudo Genes (frameshifted) :: 16 of 72 CC Pseudo Genes (incomplete) :: 57 of 72 CC Pseudo Genes (internal stop) :: 5 of 72 CC Pseudo Genes (multiple problems) :: 6 of 72 CC Genome Coverage :: 155x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 155x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..341 FT /organism="Neisseria sp. HMSC061B04" FT /host="Homo sapiens" FT /strain="HMSC061B04" FT /mol_type="genomic DNA" FT /isolation_source="sputum" FT /db_xref="taxon:1715140" XX CO join(LTQL01000054.1:1..341) // ID KV830187; SV 1; linear; genomic DNA; CON; PRO; 17946 BP. XX AC KV830187; LTQL01000000; XX PR Project:PRJNA296268; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Neisseria sp. HMSC061B04 genomic scaffold Scaffold48, whole genome shotgun DE sequence. XX KW . XX OS Neisseria sp. HMSC061B04 OC Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Neisseriaceae; OC Neisseria; unclassified Neisseria. XX RN [1] RP 1-17946 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (09-FEB-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; 126f692c58a96b64b384d15eaccd20db. DR ENA; LTQL01000000; SET. DR ENA; LTQL00000000; SET. DR BioSample; SAMN04498636. XX CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 03/03/2016 04:32:09 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 2,213 CC CDS (total) :: 2,154 CC Genes (coding) :: 2,082 CC CDS (coding) :: 2,082 CC Genes (RNA) :: 59 CC rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC tRNAs :: 52 CC ncRNAs :: 4 CC Pseudo Genes (total) :: 72 CC Pseudo Genes (ambiguous residues) :: 0 of 72 CC Pseudo Genes (frameshifted) :: 16 of 72 CC Pseudo Genes (incomplete) :: 57 of 72 CC Pseudo Genes (internal stop) :: 5 of 72 CC Pseudo Genes (multiple problems) :: 6 of 72 CC Genome Coverage :: 155x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 155x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..17946 FT /organism="Neisseria sp. HMSC061B04" FT /host="Homo sapiens" FT /strain="HMSC061B04" FT /mol_type="genomic DNA" FT /isolation_source="sputum" FT /db_xref="taxon:1715140" XX CO join(LTQL01000055.1:1..17946) // ID KV830188; SV 1; linear; genomic DNA; CON; PRO; 26107 BP. XX AC KV830188; LTQL01000000; XX PR Project:PRJNA296268; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Neisseria sp. HMSC061B04 genomic scaffold Scaffold49, whole genome shotgun DE sequence. XX KW . XX OS Neisseria sp. HMSC061B04 OC Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Neisseriaceae; OC Neisseria; unclassified Neisseria. XX RN [1] RP 1-26107 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (09-FEB-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; c15d9bc7fccc4297b33531a3e5ad93a6. DR ENA; LTQL01000000; SET. DR ENA; LTQL00000000; SET. DR BioSample; SAMN04498636. XX CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 03/03/2016 04:32:09 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 2,213 CC CDS (total) :: 2,154 CC Genes (coding) :: 2,082 CC CDS (coding) :: 2,082 CC Genes (RNA) :: 59 CC rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC tRNAs :: 52 CC ncRNAs :: 4 CC Pseudo Genes (total) :: 72 CC Pseudo Genes (ambiguous residues) :: 0 of 72 CC Pseudo Genes (frameshifted) :: 16 of 72 CC Pseudo Genes (incomplete) :: 57 of 72 CC Pseudo Genes (internal stop) :: 5 of 72 CC Pseudo Genes (multiple problems) :: 6 of 72 CC Genome Coverage :: 155x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 155x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..26107 FT /organism="Neisseria sp. HMSC061B04" FT /host="Homo sapiens" FT /strain="HMSC061B04" FT /mol_type="genomic DNA" FT /isolation_source="sputum" FT /db_xref="taxon:1715140" XX CO join(LTQL01000056.1:1..26107) // ID KV830189; SV 1; linear; genomic DNA; CON; PRO; 167083 BP. XX AC KV830189; LTQL01000000; XX PR Project:PRJNA296268; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Neisseria sp. HMSC061B04 genomic scaffold Scaffold50, whole genome shotgun DE sequence. XX KW . XX OS Neisseria sp. HMSC061B04 OC Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Neisseriaceae; OC Neisseria; unclassified Neisseria. XX RN [1] RP 1-167083 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (09-FEB-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; 195b86c55b74493373ccf5e942ccfafd. DR ENA; LTQL01000000; SET. DR ENA; LTQL00000000; SET. DR BioSample; SAMN04498636. XX CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 03/03/2016 04:32:09 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 2,213 CC CDS (total) :: 2,154 CC Genes (coding) :: 2,082 CC CDS (coding) :: 2,082 CC Genes (RNA) :: 59 CC rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC tRNAs :: 52 CC ncRNAs :: 4 CC Pseudo Genes (total) :: 72 CC Pseudo Genes (ambiguous residues) :: 0 of 72 CC Pseudo Genes (frameshifted) :: 16 of 72 CC Pseudo Genes (incomplete) :: 57 of 72 CC Pseudo Genes (internal stop) :: 5 of 72 CC Pseudo Genes (multiple problems) :: 6 of 72 CC Genome Coverage :: 155x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 155x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..167083 FT /organism="Neisseria sp. HMSC061B04" FT /host="Homo sapiens" FT /strain="HMSC061B04" FT /mol_type="genomic DNA" FT /isolation_source="sputum" FT /db_xref="taxon:1715140" FT assembly_gap 46975..47074 FT /estimated_length=unknown FT /gap_type="within scaffold" FT /linkage_evidence="paired-ends" XX CO join(LTQL01000058.1:1..46974,gap(unk100),LTQL01000059.1:1..120009) // ID KV830190; SV 1; linear; genomic DNA; CON; PRO; 264 BP. XX AC KV830190; LTQL01000000; XX PR Project:PRJNA296268; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Neisseria sp. HMSC061B04 genomic scaffold Scaffold53, whole genome shotgun DE sequence. XX KW . XX OS Neisseria sp. HMSC061B04 OC Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Neisseriaceae; OC Neisseria; unclassified Neisseria. XX RN [1] RP 1-264 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (09-FEB-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; 0ec5e97831444ae4d69705c74f309844. DR ENA; LTQL01000000; SET. DR ENA; LTQL00000000; SET. DR BioSample; SAMN04498636. XX CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 03/03/2016 04:32:09 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 2,213 CC CDS (total) :: 2,154 CC Genes (coding) :: 2,082 CC CDS (coding) :: 2,082 CC Genes (RNA) :: 59 CC rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC tRNAs :: 52 CC ncRNAs :: 4 CC Pseudo Genes (total) :: 72 CC Pseudo Genes (ambiguous residues) :: 0 of 72 CC Pseudo Genes (frameshifted) :: 16 of 72 CC Pseudo Genes (incomplete) :: 57 of 72 CC Pseudo Genes (internal stop) :: 5 of 72 CC Pseudo Genes (multiple problems) :: 6 of 72 CC Genome Coverage :: 155x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 155x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..264 FT /organism="Neisseria sp. HMSC061B04" FT /host="Homo sapiens" FT /strain="HMSC061B04" FT /mol_type="genomic DNA" FT /isolation_source="sputum" FT /db_xref="taxon:1715140" XX CO join(LTQL01000060.1:1..264) // ID KV830191; SV 1; linear; genomic DNA; CON; PRO; 203378 BP. XX AC KV830191; LTQL01000000; XX PR Project:PRJNA296268; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Neisseria sp. HMSC061B04 genomic scaffold Scaffold55, whole genome shotgun DE sequence. XX KW . XX OS Neisseria sp. HMSC061B04 OC Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Neisseriaceae; OC Neisseria; unclassified Neisseria. XX RN [1] RP 1-203378 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (09-FEB-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; b0413ddbf2d5b3e407b50b36b77d4fcf. DR ENA; LTQL01000000; SET. DR ENA; LTQL00000000; SET. DR BioSample; SAMN04498636. XX CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 03/03/2016 04:32:09 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 2,213 CC CDS (total) :: 2,154 CC Genes (coding) :: 2,082 CC CDS (coding) :: 2,082 CC Genes (RNA) :: 59 CC rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC tRNAs :: 52 CC ncRNAs :: 4 CC Pseudo Genes (total) :: 72 CC Pseudo Genes (ambiguous residues) :: 0 of 72 CC Pseudo Genes (frameshifted) :: 16 of 72 CC Pseudo Genes (incomplete) :: 57 of 72 CC Pseudo Genes (internal stop) :: 5 of 72 CC Pseudo Genes (multiple problems) :: 6 of 72 CC Genome Coverage :: 155x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 155x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..203378 FT /organism="Neisseria sp. HMSC061B04" FT /host="Homo sapiens" FT /strain="HMSC061B04" FT /mol_type="genomic DNA" FT /isolation_source="sputum" FT /db_xref="taxon:1715140" XX CO join(LTQL01000061.1:1..203378) // ID KV830192; SV 1; linear; genomic DNA; CON; PRO; 1024 BP. XX AC KV830192; LTQL01000000; XX PR Project:PRJNA296268; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Neisseria sp. HMSC061B04 genomic scaffold Scaffold56, whole genome shotgun DE sequence. XX KW . XX OS Neisseria sp. HMSC061B04 OC Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Neisseriaceae; OC Neisseria; unclassified Neisseria. XX RN [1] RP 1-1024 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (09-FEB-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; 90e524ce142b3aa8ed919fd424651e38. DR ENA; LTQL01000000; SET. DR ENA; LTQL00000000; SET. DR BioSample; SAMN04498636. XX CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 03/03/2016 04:32:09 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 2,213 CC CDS (total) :: 2,154 CC Genes (coding) :: 2,082 CC CDS (coding) :: 2,082 CC Genes (RNA) :: 59 CC rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC tRNAs :: 52 CC ncRNAs :: 4 CC Pseudo Genes (total) :: 72 CC Pseudo Genes (ambiguous residues) :: 0 of 72 CC Pseudo Genes (frameshifted) :: 16 of 72 CC Pseudo Genes (incomplete) :: 57 of 72 CC Pseudo Genes (internal stop) :: 5 of 72 CC Pseudo Genes (multiple problems) :: 6 of 72 CC Genome Coverage :: 155x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 155x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..1024 FT /organism="Neisseria sp. HMSC061B04" FT /host="Homo sapiens" FT /strain="HMSC061B04" FT /mol_type="genomic DNA" FT /isolation_source="sputum" FT /db_xref="taxon:1715140" XX CO join(LTQL01000062.1:1..1024) // ID KV830193; SV 1; linear; genomic DNA; CON; PRO; 59614 BP. XX AC KV830193; LTQL01000000; XX PR Project:PRJNA296268; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Neisseria sp. HMSC061B04 genomic scaffold Scaffold57, whole genome shotgun DE sequence. XX KW . XX OS Neisseria sp. HMSC061B04 OC Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Neisseriaceae; OC Neisseria; unclassified Neisseria. XX RN [1] RP 1-59614 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (09-FEB-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; beb33160d62a83cdf1c6154cfad80f2b. DR ENA; LTQL01000000; SET. DR ENA; LTQL00000000; SET. DR BioSample; SAMN04498636. XX CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 03/03/2016 04:32:09 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 2,213 CC CDS (total) :: 2,154 CC Genes (coding) :: 2,082 CC CDS (coding) :: 2,082 CC Genes (RNA) :: 59 CC rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC tRNAs :: 52 CC ncRNAs :: 4 CC Pseudo Genes (total) :: 72 CC Pseudo Genes (ambiguous residues) :: 0 of 72 CC Pseudo Genes (frameshifted) :: 16 of 72 CC Pseudo Genes (incomplete) :: 57 of 72 CC Pseudo Genes (internal stop) :: 5 of 72 CC Pseudo Genes (multiple problems) :: 6 of 72 CC Genome Coverage :: 155x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 155x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..59614 FT /organism="Neisseria sp. HMSC061B04" FT /host="Homo sapiens" FT /strain="HMSC061B04" FT /mol_type="genomic DNA" FT /isolation_source="sputum" FT /db_xref="taxon:1715140" FT assembly_gap 12662..12761 FT /estimated_length=unknown FT /gap_type="within scaffold" FT /linkage_evidence="paired-ends" XX CO join(LTQL01000063.1:1..12661,gap(unk100),LTQL01000064.1:1..46853) // ID KV830194; SV 1; linear; genomic DNA; CON; PRO; 41786 BP. XX AC KV830194; LTQL01000000; XX PR Project:PRJNA296268; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Neisseria sp. HMSC061B04 genomic scaffold Scaffold58, whole genome shotgun DE sequence. XX KW . XX OS Neisseria sp. HMSC061B04 OC Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Neisseriaceae; OC Neisseria; unclassified Neisseria. XX RN [1] RP 1-41786 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (09-FEB-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; 3436128c133db426c3cdc86782ab1604. DR ENA; LTQL01000000; SET. DR ENA; LTQL00000000; SET. DR BioSample; SAMN04498636. XX CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 03/03/2016 04:32:09 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 2,213 CC CDS (total) :: 2,154 CC Genes (coding) :: 2,082 CC CDS (coding) :: 2,082 CC Genes (RNA) :: 59 CC rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC tRNAs :: 52 CC ncRNAs :: 4 CC Pseudo Genes (total) :: 72 CC Pseudo Genes (ambiguous residues) :: 0 of 72 CC Pseudo Genes (frameshifted) :: 16 of 72 CC Pseudo Genes (incomplete) :: 57 of 72 CC Pseudo Genes (internal stop) :: 5 of 72 CC Pseudo Genes (multiple problems) :: 6 of 72 CC Genome Coverage :: 155x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 155x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..41786 FT /organism="Neisseria sp. HMSC061B04" FT /host="Homo sapiens" FT /strain="HMSC061B04" FT /mol_type="genomic DNA" FT /isolation_source="sputum" FT /db_xref="taxon:1715140" XX CO join(LTQL01000065.1:1..41786) // ID KV830195; SV 1; linear; genomic DNA; CON; PRO; 2434 BP. XX AC KV830195; LTQL01000000; XX PR Project:PRJNA296268; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Neisseria sp. HMSC061B04 genomic scaffold Scaffold59, whole genome shotgun DE sequence. XX KW . XX OS Neisseria sp. HMSC061B04 OC Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Neisseriaceae; OC Neisseria; unclassified Neisseria. XX RN [1] RP 1-2434 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (09-FEB-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; 78b63031e6bc19e53eb69403f65fba26. DR ENA; LTQL01000000; SET. DR ENA; LTQL00000000; SET. DR BioSample; SAMN04498636. XX CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 03/03/2016 04:32:09 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 2,213 CC CDS (total) :: 2,154 CC Genes (coding) :: 2,082 CC CDS (coding) :: 2,082 CC Genes (RNA) :: 59 CC rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC tRNAs :: 52 CC ncRNAs :: 4 CC Pseudo Genes (total) :: 72 CC Pseudo Genes (ambiguous residues) :: 0 of 72 CC Pseudo Genes (frameshifted) :: 16 of 72 CC Pseudo Genes (incomplete) :: 57 of 72 CC Pseudo Genes (internal stop) :: 5 of 72 CC Pseudo Genes (multiple problems) :: 6 of 72 CC Genome Coverage :: 155x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 155x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..2434 FT /organism="Neisseria sp. HMSC061B04" FT /host="Homo sapiens" FT /strain="HMSC061B04" FT /mol_type="genomic DNA" FT /isolation_source="sputum" FT /db_xref="taxon:1715140" XX CO join(LTQL01000066.1:1..2434) // ID KV830196; SV 1; linear; genomic DNA; CON; PRO; 323 BP. XX AC KV830196; LTQL01000000; XX PR Project:PRJNA296268; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Neisseria sp. HMSC061B04 genomic scaffold Scaffold60, whole genome shotgun DE sequence. XX KW . XX OS Neisseria sp. HMSC061B04 OC Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Neisseriaceae; OC Neisseria; unclassified Neisseria. XX RN [1] RP 1-323 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (09-FEB-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; 1e73e8fad11ca67374135fe7a39021f4. DR ENA; LTQL01000000; SET. DR ENA; LTQL00000000; SET. DR BioSample; SAMN04498636. XX CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 03/03/2016 04:32:09 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 2,213 CC CDS (total) :: 2,154 CC Genes (coding) :: 2,082 CC CDS (coding) :: 2,082 CC Genes (RNA) :: 59 CC rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC tRNAs :: 52 CC ncRNAs :: 4 CC Pseudo Genes (total) :: 72 CC Pseudo Genes (ambiguous residues) :: 0 of 72 CC Pseudo Genes (frameshifted) :: 16 of 72 CC Pseudo Genes (incomplete) :: 57 of 72 CC Pseudo Genes (internal stop) :: 5 of 72 CC Pseudo Genes (multiple problems) :: 6 of 72 CC Genome Coverage :: 155x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 155x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..323 FT /organism="Neisseria sp. HMSC061B04" FT /host="Homo sapiens" FT /strain="HMSC061B04" FT /mol_type="genomic DNA" FT /isolation_source="sputum" FT /db_xref="taxon:1715140" XX CO join(LTQL01000068.1:1..323) // ID KV830197; SV 1; linear; genomic DNA; CON; PRO; 91811 BP. XX AC KV830197; LTQL01000000; XX PR Project:PRJNA296268; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Neisseria sp. HMSC061B04 genomic scaffold Scaffold62, whole genome shotgun DE sequence. XX KW . XX OS Neisseria sp. HMSC061B04 OC Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Neisseriaceae; OC Neisseria; unclassified Neisseria. XX RN [1] RP 1-91811 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (09-FEB-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; 4c55b05d09253a6a9939b4a21fbea2e0. DR ENA; LTQL01000000; SET. DR ENA; LTQL00000000; SET. DR BioSample; SAMN04498636. XX CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 03/03/2016 04:32:09 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 2,213 CC CDS (total) :: 2,154 CC Genes (coding) :: 2,082 CC CDS (coding) :: 2,082 CC Genes (RNA) :: 59 CC rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC tRNAs :: 52 CC ncRNAs :: 4 CC Pseudo Genes (total) :: 72 CC Pseudo Genes (ambiguous residues) :: 0 of 72 CC Pseudo Genes (frameshifted) :: 16 of 72 CC Pseudo Genes (incomplete) :: 57 of 72 CC Pseudo Genes (internal stop) :: 5 of 72 CC Pseudo Genes (multiple problems) :: 6 of 72 CC Genome Coverage :: 155x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 155x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..91811 FT /organism="Neisseria sp. HMSC061B04" FT /host="Homo sapiens" FT /strain="HMSC061B04" FT /mol_type="genomic DNA" FT /isolation_source="sputum" FT /db_xref="taxon:1715140" FT assembly_gap 41852..41951 FT /estimated_length=unknown FT /gap_type="within scaffold" FT /linkage_evidence="paired-ends" XX CO join(LTQL01000069.1:1..41851,gap(unk100),LTQL01000070.1:1..49860) // ID KV830198; SV 1; linear; genomic DNA; CON; PRO; 2578 BP. XX AC KV830198; LTQL01000000; XX PR Project:PRJNA296268; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Neisseria sp. HMSC061B04 genomic scaffold Scaffold63, whole genome shotgun DE sequence. XX KW . XX OS Neisseria sp. HMSC061B04 OC Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Neisseriaceae; OC Neisseria; unclassified Neisseria. XX RN [1] RP 1-2578 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (09-FEB-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; 16703c371c2da1cc8f731262810db693. DR ENA; LTQL01000000; SET. DR ENA; LTQL00000000; SET. DR BioSample; SAMN04498636. XX CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 03/03/2016 04:32:09 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 2,213 CC CDS (total) :: 2,154 CC Genes (coding) :: 2,082 CC CDS (coding) :: 2,082 CC Genes (RNA) :: 59 CC rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC tRNAs :: 52 CC ncRNAs :: 4 CC Pseudo Genes (total) :: 72 CC Pseudo Genes (ambiguous residues) :: 0 of 72 CC Pseudo Genes (frameshifted) :: 16 of 72 CC Pseudo Genes (incomplete) :: 57 of 72 CC Pseudo Genes (internal stop) :: 5 of 72 CC Pseudo Genes (multiple problems) :: 6 of 72 CC Genome Coverage :: 155x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 155x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..2578 FT /organism="Neisseria sp. HMSC061B04" FT /host="Homo sapiens" FT /strain="HMSC061B04" FT /mol_type="genomic DNA" FT /isolation_source="sputum" FT /db_xref="taxon:1715140" XX CO join(LTQL01000071.1:1..2578) // ID KV830199; SV 1; linear; genomic DNA; CON; PRO; 10137 BP. XX AC KV830199; LTQL01000000; XX PR Project:PRJNA296268; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Neisseria sp. HMSC061B04 genomic scaffold Scaffold64, whole genome shotgun DE sequence. XX KW . XX OS Neisseria sp. HMSC061B04 OC Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Neisseriaceae; OC Neisseria; unclassified Neisseria. XX RN [1] RP 1-10137 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (09-FEB-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; 95ad1125f51505e29dfdb01345a3ecb3. DR ENA; LTQL01000000; SET. DR ENA; LTQL00000000; SET. DR BioSample; SAMN04498636. XX CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 03/03/2016 04:32:09 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 2,213 CC CDS (total) :: 2,154 CC Genes (coding) :: 2,082 CC CDS (coding) :: 2,082 CC Genes (RNA) :: 59 CC rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC tRNAs :: 52 CC ncRNAs :: 4 CC Pseudo Genes (total) :: 72 CC Pseudo Genes (ambiguous residues) :: 0 of 72 CC Pseudo Genes (frameshifted) :: 16 of 72 CC Pseudo Genes (incomplete) :: 57 of 72 CC Pseudo Genes (internal stop) :: 5 of 72 CC Pseudo Genes (multiple problems) :: 6 of 72 CC Genome Coverage :: 155x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 155x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..10137 FT /organism="Neisseria sp. HMSC061B04" FT /host="Homo sapiens" FT /strain="HMSC061B04" FT /mol_type="genomic DNA" FT /isolation_source="sputum" FT /db_xref="taxon:1715140" XX CO join(LTQL01000072.1:1..10137) // ID KV830200; SV 1; linear; genomic DNA; CON; PRO; 45805 BP. XX AC KV830200; LTQL01000000; XX PR Project:PRJNA296268; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Neisseria sp. HMSC061B04 genomic scaffold Scaffold66, whole genome shotgun DE sequence. XX KW . XX OS Neisseria sp. HMSC061B04 OC Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Neisseriaceae; OC Neisseria; unclassified Neisseria. XX RN [1] RP 1-45805 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (09-FEB-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; 0c185e763376e95d8cc7abdb4138133e. DR ENA; LTQL01000000; SET. DR ENA; LTQL00000000; SET. DR BioSample; SAMN04498636. XX CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 03/03/2016 04:32:09 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 2,213 CC CDS (total) :: 2,154 CC Genes (coding) :: 2,082 CC CDS (coding) :: 2,082 CC Genes (RNA) :: 59 CC rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC tRNAs :: 52 CC ncRNAs :: 4 CC Pseudo Genes (total) :: 72 CC Pseudo Genes (ambiguous residues) :: 0 of 72 CC Pseudo Genes (frameshifted) :: 16 of 72 CC Pseudo Genes (incomplete) :: 57 of 72 CC Pseudo Genes (internal stop) :: 5 of 72 CC Pseudo Genes (multiple problems) :: 6 of 72 CC Genome Coverage :: 155x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 155x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..45805 FT /organism="Neisseria sp. HMSC061B04" FT /host="Homo sapiens" FT /strain="HMSC061B04" FT /mol_type="genomic DNA" FT /isolation_source="sputum" FT /db_xref="taxon:1715140" FT assembly_gap 5090..5189 FT /estimated_length=unknown FT /gap_type="within scaffold" FT /linkage_evidence="paired-ends" XX CO join(LTQL01000073.1:1..5089,gap(unk100),LTQL01000074.1:1..40616) // ID KV830201; SV 1; linear; genomic DNA; CON; PRO; 54577 BP. XX AC KV830201; LTQL01000000; XX PR Project:PRJNA296268; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Neisseria sp. HMSC061B04 genomic scaffold Scaffold67, whole genome shotgun DE sequence. XX KW . XX OS Neisseria sp. HMSC061B04 OC Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Neisseriaceae; OC Neisseria; unclassified Neisseria. XX RN [1] RP 1-54577 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (09-FEB-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; b92cd81e91018b9032bf7490e7846495. DR ENA; LTQL01000000; SET. DR ENA; LTQL00000000; SET. DR BioSample; SAMN04498636. XX CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 03/03/2016 04:32:09 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 2,213 CC CDS (total) :: 2,154 CC Genes (coding) :: 2,082 CC CDS (coding) :: 2,082 CC Genes (RNA) :: 59 CC rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC tRNAs :: 52 CC ncRNAs :: 4 CC Pseudo Genes (total) :: 72 CC Pseudo Genes (ambiguous residues) :: 0 of 72 CC Pseudo Genes (frameshifted) :: 16 of 72 CC Pseudo Genes (incomplete) :: 57 of 72 CC Pseudo Genes (internal stop) :: 5 of 72 CC Pseudo Genes (multiple problems) :: 6 of 72 CC Genome Coverage :: 155x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 155x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..54577 FT /organism="Neisseria sp. HMSC061B04" FT /host="Homo sapiens" FT /strain="HMSC061B04" FT /mol_type="genomic DNA" FT /isolation_source="sputum" FT /db_xref="taxon:1715140" XX CO join(LTQL01000075.1:1..54577) // ID KV830202; SV 1; linear; genomic DNA; CON; PRO; 8684 BP. XX AC KV830202; LTQL01000000; XX PR Project:PRJNA296268; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Neisseria sp. HMSC061B04 genomic scaffold Scaffold68, whole genome shotgun DE sequence. XX KW . XX OS Neisseria sp. HMSC061B04 OC Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Neisseriaceae; OC Neisseria; unclassified Neisseria. XX RN [1] RP 1-8684 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (09-FEB-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; 70ab468a399b722e533e3423dadd0dd8. DR ENA; LTQL01000000; SET. DR ENA; LTQL00000000; SET. DR BioSample; SAMN04498636. XX CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 03/03/2016 04:32:09 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 2,213 CC CDS (total) :: 2,154 CC Genes (coding) :: 2,082 CC CDS (coding) :: 2,082 CC Genes (RNA) :: 59 CC rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC tRNAs :: 52 CC ncRNAs :: 4 CC Pseudo Genes (total) :: 72 CC Pseudo Genes (ambiguous residues) :: 0 of 72 CC Pseudo Genes (frameshifted) :: 16 of 72 CC Pseudo Genes (incomplete) :: 57 of 72 CC Pseudo Genes (internal stop) :: 5 of 72 CC Pseudo Genes (multiple problems) :: 6 of 72 CC Genome Coverage :: 155x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 155x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..8684 FT /organism="Neisseria sp. HMSC061B04" FT /host="Homo sapiens" FT /strain="HMSC061B04" FT /mol_type="genomic DNA" FT /isolation_source="sputum" FT /db_xref="taxon:1715140" XX CO join(LTQL01000076.1:1..8684) // ID KV830203; SV 1; linear; genomic DNA; CON; PRO; 220 BP. XX AC KV830203; LTQL01000000; XX PR Project:PRJNA296268; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Neisseria sp. HMSC061B04 genomic scaffold Scaffold69, whole genome shotgun DE sequence. XX KW . XX OS Neisseria sp. HMSC061B04 OC Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Neisseriaceae; OC Neisseria; unclassified Neisseria. XX RN [1] RP 1-220 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (09-FEB-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; 183af31b8dea83e1b6d8e54df588afe7. DR ENA; LTQL01000000; SET. DR ENA; LTQL00000000; SET. DR BioSample; SAMN04498636. XX CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 03/03/2016 04:32:09 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 2,213 CC CDS (total) :: 2,154 CC Genes (coding) :: 2,082 CC CDS (coding) :: 2,082 CC Genes (RNA) :: 59 CC rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC tRNAs :: 52 CC ncRNAs :: 4 CC Pseudo Genes (total) :: 72 CC Pseudo Genes (ambiguous residues) :: 0 of 72 CC Pseudo Genes (frameshifted) :: 16 of 72 CC Pseudo Genes (incomplete) :: 57 of 72 CC Pseudo Genes (internal stop) :: 5 of 72 CC Pseudo Genes (multiple problems) :: 6 of 72 CC Genome Coverage :: 155x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 155x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..220 FT /organism="Neisseria sp. HMSC061B04" FT /host="Homo sapiens" FT /strain="HMSC061B04" FT /mol_type="genomic DNA" FT /isolation_source="sputum" FT /db_xref="taxon:1715140" XX CO join(LTQL01000077.1:1..220) // ID KV830204; SV 1; linear; genomic DNA; CON; PRO; 322 BP. XX AC KV830204; LTQL01000000; XX PR Project:PRJNA296268; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Neisseria sp. HMSC061B04 genomic scaffold Scaffold70, whole genome shotgun DE sequence. XX KW . XX OS Neisseria sp. HMSC061B04 OC Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Neisseriaceae; OC Neisseria; unclassified Neisseria. XX RN [1] RP 1-322 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (09-FEB-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; 441f3c9fcbc033dfea0330bf49eb6b46. DR ENA; LTQL01000000; SET. DR ENA; LTQL00000000; SET. DR BioSample; SAMN04498636. XX CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 03/03/2016 04:32:09 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 2,213 CC CDS (total) :: 2,154 CC Genes (coding) :: 2,082 CC CDS (coding) :: 2,082 CC Genes (RNA) :: 59 CC rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC tRNAs :: 52 CC ncRNAs :: 4 CC Pseudo Genes (total) :: 72 CC Pseudo Genes (ambiguous residues) :: 0 of 72 CC Pseudo Genes (frameshifted) :: 16 of 72 CC Pseudo Genes (incomplete) :: 57 of 72 CC Pseudo Genes (internal stop) :: 5 of 72 CC Pseudo Genes (multiple problems) :: 6 of 72 CC Genome Coverage :: 155x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 155x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..322 FT /organism="Neisseria sp. HMSC061B04" FT /host="Homo sapiens" FT /strain="HMSC061B04" FT /mol_type="genomic DNA" FT /isolation_source="sputum" FT /db_xref="taxon:1715140" XX CO join(LTQL01000079.1:1..322) // ID KV830205; SV 1; linear; genomic DNA; CON; PRO; 124117 BP. XX AC KV830205; LTQL01000000; XX PR Project:PRJNA296268; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Neisseria sp. HMSC061B04 genomic scaffold Scaffold73, whole genome shotgun DE sequence. XX KW . XX OS Neisseria sp. HMSC061B04 OC Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Neisseriaceae; OC Neisseria; unclassified Neisseria. XX RN [1] RP 1-124117 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (09-FEB-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; 497a7ca054d8a99cf13c01e6cbc5b5e5. DR ENA; LTQL01000000; SET. DR ENA; LTQL00000000; SET. DR BioSample; SAMN04498636. XX CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 03/03/2016 04:32:09 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 2,213 CC CDS (total) :: 2,154 CC Genes (coding) :: 2,082 CC CDS (coding) :: 2,082 CC Genes (RNA) :: 59 CC rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC tRNAs :: 52 CC ncRNAs :: 4 CC Pseudo Genes (total) :: 72 CC Pseudo Genes (ambiguous residues) :: 0 of 72 CC Pseudo Genes (frameshifted) :: 16 of 72 CC Pseudo Genes (incomplete) :: 57 of 72 CC Pseudo Genes (internal stop) :: 5 of 72 CC Pseudo Genes (multiple problems) :: 6 of 72 CC Genome Coverage :: 155x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 155x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..124117 FT /organism="Neisseria sp. HMSC061B04" FT /host="Homo sapiens" FT /strain="HMSC061B04" FT /mol_type="genomic DNA" FT /isolation_source="sputum" FT /db_xref="taxon:1715140" FT assembly_gap 89308..89407 FT /estimated_length=unknown FT /gap_type="within scaffold" FT /linkage_evidence="paired-ends" FT assembly_gap 93844..93943 FT /estimated_length=unknown FT /gap_type="within scaffold" FT /linkage_evidence="paired-ends" XX CO join(LTQL01000080.1:1..89307,gap(unk100),LTQL01000081.1:1..4436, CO gap(unk100),LTQL01000082.1:1..30174) // ID KV830206; SV 1; linear; genomic DNA; CON; PRO; 6266 BP. XX AC KV830206; LTQL01000000; XX PR Project:PRJNA296268; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Neisseria sp. HMSC061B04 genomic scaffold Scaffold80, whole genome shotgun DE sequence. XX KW . XX OS Neisseria sp. HMSC061B04 OC Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Neisseriaceae; OC Neisseria; unclassified Neisseria. XX RN [1] RP 1-6266 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (09-FEB-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; 8436cd471a1d779e597fd45fca5bd3cd. DR ENA; LTQL01000000; SET. DR ENA; LTQL00000000; SET. DR BioSample; SAMN04498636. XX CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 03/03/2016 04:32:09 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 2,213 CC CDS (total) :: 2,154 CC Genes (coding) :: 2,082 CC CDS (coding) :: 2,082 CC Genes (RNA) :: 59 CC rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC tRNAs :: 52 CC ncRNAs :: 4 CC Pseudo Genes (total) :: 72 CC Pseudo Genes (ambiguous residues) :: 0 of 72 CC Pseudo Genes (frameshifted) :: 16 of 72 CC Pseudo Genes (incomplete) :: 57 of 72 CC Pseudo Genes (internal stop) :: 5 of 72 CC Pseudo Genes (multiple problems) :: 6 of 72 CC Genome Coverage :: 155x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 155x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..6266 FT /organism="Neisseria sp. HMSC061B04" FT /host="Homo sapiens" FT /strain="HMSC061B04" FT /mol_type="genomic DNA" FT /isolation_source="sputum" FT /db_xref="taxon:1715140" XX CO join(LTQL01000084.1:1..6266) // ID KV830207; SV 1; linear; genomic DNA; CON; PRO; 439 BP. XX AC KV830207; LTQL01000000; XX PR Project:PRJNA296268; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Neisseria sp. HMSC061B04 genomic scaffold Scaffold83, whole genome shotgun DE sequence. XX KW . XX OS Neisseria sp. HMSC061B04 OC Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Neisseriaceae; OC Neisseria; unclassified Neisseria. XX RN [1] RP 1-439 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (09-FEB-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; 109f162a6151b0c3fa5f59bb7cb16a80. DR ENA; LTQL01000000; SET. DR ENA; LTQL00000000; SET. DR BioSample; SAMN04498636. XX CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 03/03/2016 04:32:09 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 2,213 CC CDS (total) :: 2,154 CC Genes (coding) :: 2,082 CC CDS (coding) :: 2,082 CC Genes (RNA) :: 59 CC rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC tRNAs :: 52 CC ncRNAs :: 4 CC Pseudo Genes (total) :: 72 CC Pseudo Genes (ambiguous residues) :: 0 of 72 CC Pseudo Genes (frameshifted) :: 16 of 72 CC Pseudo Genes (incomplete) :: 57 of 72 CC Pseudo Genes (internal stop) :: 5 of 72 CC Pseudo Genes (multiple problems) :: 6 of 72 CC Genome Coverage :: 155x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 155x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..439 FT /organism="Neisseria sp. HMSC061B04" FT /host="Homo sapiens" FT /strain="HMSC061B04" FT /mol_type="genomic DNA" FT /isolation_source="sputum" FT /db_xref="taxon:1715140" XX CO join(LTQL01000085.1:1..439) // ID KV830208; SV 1; linear; genomic DNA; CON; PRO; 21856 BP. XX AC KV830208; LTQL01000000; XX PR Project:PRJNA296268; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Neisseria sp. HMSC061B04 genomic scaffold Scaffold84, whole genome shotgun DE sequence. XX KW . XX OS Neisseria sp. HMSC061B04 OC Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Neisseriaceae; OC Neisseria; unclassified Neisseria. XX RN [1] RP 1-21856 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (09-FEB-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; baebebcf27a532aa7e5e84a1a6e3ba9e. DR ENA; LTQL01000000; SET. DR ENA; LTQL00000000; SET. DR BioSample; SAMN04498636. XX CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 03/03/2016 04:32:09 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 2,213 CC CDS (total) :: 2,154 CC Genes (coding) :: 2,082 CC CDS (coding) :: 2,082 CC Genes (RNA) :: 59 CC rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC tRNAs :: 52 CC ncRNAs :: 4 CC Pseudo Genes (total) :: 72 CC Pseudo Genes (ambiguous residues) :: 0 of 72 CC Pseudo Genes (frameshifted) :: 16 of 72 CC Pseudo Genes (incomplete) :: 57 of 72 CC Pseudo Genes (internal stop) :: 5 of 72 CC Pseudo Genes (multiple problems) :: 6 of 72 CC Genome Coverage :: 155x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 155x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..21856 FT /organism="Neisseria sp. HMSC061B04" FT /host="Homo sapiens" FT /strain="HMSC061B04" FT /mol_type="genomic DNA" FT /isolation_source="sputum" FT /db_xref="taxon:1715140" XX CO join(LTQL01000086.1:1..21856) // ID KV830209; SV 1; linear; genomic DNA; CON; PRO; 1186 BP. XX AC KV830209; LTQL01000000; XX PR Project:PRJNA296268; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Neisseria sp. HMSC061B04 genomic scaffold Scaffold85, whole genome shotgun DE sequence. XX KW . XX OS Neisseria sp. HMSC061B04 OC Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Neisseriaceae; OC Neisseria; unclassified Neisseria. XX RN [1] RP 1-1186 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (09-FEB-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; 0869eb4be9f46df7064c509681a91aa4. DR ENA; LTQL01000000; SET. DR ENA; LTQL00000000; SET. DR BioSample; SAMN04498636. XX CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 03/03/2016 04:32:09 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 2,213 CC CDS (total) :: 2,154 CC Genes (coding) :: 2,082 CC CDS (coding) :: 2,082 CC Genes (RNA) :: 59 CC rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC tRNAs :: 52 CC ncRNAs :: 4 CC Pseudo Genes (total) :: 72 CC Pseudo Genes (ambiguous residues) :: 0 of 72 CC Pseudo Genes (frameshifted) :: 16 of 72 CC Pseudo Genes (incomplete) :: 57 of 72 CC Pseudo Genes (internal stop) :: 5 of 72 CC Pseudo Genes (multiple problems) :: 6 of 72 CC Genome Coverage :: 155x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 155x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..1186 FT /organism="Neisseria sp. HMSC061B04" FT /host="Homo sapiens" FT /strain="HMSC061B04" FT /mol_type="genomic DNA" FT /isolation_source="sputum" FT /db_xref="taxon:1715140" XX CO join(LTQL01000087.1:1..1186) // ID KV830210; SV 1; linear; genomic DNA; CON; PRO; 1666 BP. XX AC KV830210; LTQL01000000; XX PR Project:PRJNA296268; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Neisseria sp. HMSC061B04 genomic scaffold Scaffold86, whole genome shotgun DE sequence. XX KW . XX OS Neisseria sp. HMSC061B04 OC Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Neisseriaceae; OC Neisseria; unclassified Neisseria. XX RN [1] RP 1-1666 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (09-FEB-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; a10cd86810dfd966713b1bfd39abf267. DR ENA; LTQL01000000; SET. DR ENA; LTQL00000000; SET. DR BioSample; SAMN04498636. XX CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 03/03/2016 04:32:09 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 2,213 CC CDS (total) :: 2,154 CC Genes (coding) :: 2,082 CC CDS (coding) :: 2,082 CC Genes (RNA) :: 59 CC rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC tRNAs :: 52 CC ncRNAs :: 4 CC Pseudo Genes (total) :: 72 CC Pseudo Genes (ambiguous residues) :: 0 of 72 CC Pseudo Genes (frameshifted) :: 16 of 72 CC Pseudo Genes (incomplete) :: 57 of 72 CC Pseudo Genes (internal stop) :: 5 of 72 CC Pseudo Genes (multiple problems) :: 6 of 72 CC Genome Coverage :: 155x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 155x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..1666 FT /organism="Neisseria sp. HMSC061B04" FT /host="Homo sapiens" FT /strain="HMSC061B04" FT /mol_type="genomic DNA" FT /isolation_source="sputum" FT /db_xref="taxon:1715140" FT assembly_gap 727..826 FT /estimated_length=unknown FT /gap_type="within scaffold" FT /linkage_evidence="paired-ends" XX CO join(LTQL01000088.1:1..726,gap(unk100),LTQL01000089.1:1..840) // ID KV830211; SV 1; linear; genomic DNA; CON; PRO; 1589 BP. XX AC KV830211; LTQL01000000; XX PR Project:PRJNA296268; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Neisseria sp. HMSC061B04 genomic scaffold Scaffold91, whole genome shotgun DE sequence. XX KW . XX OS Neisseria sp. HMSC061B04 OC Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Neisseriaceae; OC Neisseria; unclassified Neisseria. XX RN [1] RP 1-1589 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (09-FEB-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; 0c44da089de0b39bb5b1a390ac9886c7. DR ENA; LTQL01000000; SET. DR ENA; LTQL00000000; SET. DR BioSample; SAMN04498636. XX CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 03/03/2016 04:32:09 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 2,213 CC CDS (total) :: 2,154 CC Genes (coding) :: 2,082 CC CDS (coding) :: 2,082 CC Genes (RNA) :: 59 CC rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC tRNAs :: 52 CC ncRNAs :: 4 CC Pseudo Genes (total) :: 72 CC Pseudo Genes (ambiguous residues) :: 0 of 72 CC Pseudo Genes (frameshifted) :: 16 of 72 CC Pseudo Genes (incomplete) :: 57 of 72 CC Pseudo Genes (internal stop) :: 5 of 72 CC Pseudo Genes (multiple problems) :: 6 of 72 CC Genome Coverage :: 155x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 155x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..1589 FT /organism="Neisseria sp. HMSC061B04" FT /host="Homo sapiens" FT /strain="HMSC061B04" FT /mol_type="genomic DNA" FT /isolation_source="sputum" FT /db_xref="taxon:1715140" XX CO join(LTQL01000090.1:1..1589) // ID KV830212; SV 1; linear; genomic DNA; CON; PRO; 439 BP. XX AC KV830212; LTQL01000000; XX PR Project:PRJNA296268; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Neisseria sp. HMSC061B04 genomic scaffold Scaffold92, whole genome shotgun DE sequence. XX KW . XX OS Neisseria sp. HMSC061B04 OC Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Neisseriaceae; OC Neisseria; unclassified Neisseria. XX RN [1] RP 1-439 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (09-FEB-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; 27304f8394315c31674202d65dcedc7f. DR ENA; LTQL01000000; SET. DR ENA; LTQL00000000; SET. DR BioSample; SAMN04498636. XX CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 03/03/2016 04:32:09 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 2,213 CC CDS (total) :: 2,154 CC Genes (coding) :: 2,082 CC CDS (coding) :: 2,082 CC Genes (RNA) :: 59 CC rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC tRNAs :: 52 CC ncRNAs :: 4 CC Pseudo Genes (total) :: 72 CC Pseudo Genes (ambiguous residues) :: 0 of 72 CC Pseudo Genes (frameshifted) :: 16 of 72 CC Pseudo Genes (incomplete) :: 57 of 72 CC Pseudo Genes (internal stop) :: 5 of 72 CC Pseudo Genes (multiple problems) :: 6 of 72 CC Genome Coverage :: 155x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 155x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..439 FT /organism="Neisseria sp. HMSC061B04" FT /host="Homo sapiens" FT /strain="HMSC061B04" FT /mol_type="genomic DNA" FT /isolation_source="sputum" FT /db_xref="taxon:1715140" XX CO join(LTQL01000091.1:1..439) // ID KV830213; SV 1; linear; genomic DNA; CON; PRO; 643 BP. XX AC KV830213; LTQL01000000; XX PR Project:PRJNA296268; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Neisseria sp. HMSC061B04 genomic scaffold Scaffold94, whole genome shotgun DE sequence. XX KW . XX OS Neisseria sp. HMSC061B04 OC Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Neisseriaceae; OC Neisseria; unclassified Neisseria. XX RN [1] RP 1-643 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (09-FEB-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; 40ec820d1d51784346e61f36c2b9fe26. DR ENA; LTQL01000000; SET. DR ENA; LTQL00000000; SET. DR BioSample; SAMN04498636. XX CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 03/03/2016 04:32:09 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 2,213 CC CDS (total) :: 2,154 CC Genes (coding) :: 2,082 CC CDS (coding) :: 2,082 CC Genes (RNA) :: 59 CC rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC tRNAs :: 52 CC ncRNAs :: 4 CC Pseudo Genes (total) :: 72 CC Pseudo Genes (ambiguous residues) :: 0 of 72 CC Pseudo Genes (frameshifted) :: 16 of 72 CC Pseudo Genes (incomplete) :: 57 of 72 CC Pseudo Genes (internal stop) :: 5 of 72 CC Pseudo Genes (multiple problems) :: 6 of 72 CC Genome Coverage :: 155x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 155x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..643 FT /organism="Neisseria sp. HMSC061B04" FT /host="Homo sapiens" FT /strain="HMSC061B04" FT /mol_type="genomic DNA" FT /isolation_source="sputum" FT /db_xref="taxon:1715140" XX CO join(LTQL01000092.1:1..643) // ID KV830214; SV 1; linear; genomic DNA; CON; PRO; 515 BP. XX AC KV830214; LTQL01000000; XX PR Project:PRJNA296268; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Neisseria sp. HMSC061B04 genomic scaffold Scaffold96, whole genome shotgun DE sequence. XX KW . XX OS Neisseria sp. HMSC061B04 OC Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Neisseriaceae; OC Neisseria; unclassified Neisseria. XX RN [1] RP 1-515 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (09-FEB-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; ac176b0d967cdb205c49bc32b05fcd28. DR ENA; LTQL01000000; SET. DR ENA; LTQL00000000; SET. DR BioSample; SAMN04498636. XX CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 03/03/2016 04:32:09 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 2,213 CC CDS (total) :: 2,154 CC Genes (coding) :: 2,082 CC CDS (coding) :: 2,082 CC Genes (RNA) :: 59 CC rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC tRNAs :: 52 CC ncRNAs :: 4 CC Pseudo Genes (total) :: 72 CC Pseudo Genes (ambiguous residues) :: 0 of 72 CC Pseudo Genes (frameshifted) :: 16 of 72 CC Pseudo Genes (incomplete) :: 57 of 72 CC Pseudo Genes (internal stop) :: 5 of 72 CC Pseudo Genes (multiple problems) :: 6 of 72 CC Genome Coverage :: 155x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 155x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..515 FT /organism="Neisseria sp. HMSC061B04" FT /host="Homo sapiens" FT /strain="HMSC061B04" FT /mol_type="genomic DNA" FT /isolation_source="sputum" FT /db_xref="taxon:1715140" XX CO join(LTQL01000093.1:1..515) // ID KV830215; SV 1; linear; genomic DNA; CON; PRO; 384 BP. XX AC KV830215; LTQL01000000; XX PR Project:PRJNA296268; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Neisseria sp. HMSC061B04 genomic scaffold Scaffold97, whole genome shotgun DE sequence. XX KW . XX OS Neisseria sp. HMSC061B04 OC Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Neisseriaceae; OC Neisseria; unclassified Neisseria. XX RN [1] RP 1-384 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (09-FEB-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; 6297855980cbf962cd718793dc702659. DR ENA; LTQL01000000; SET. DR ENA; LTQL00000000; SET. DR BioSample; SAMN04498636. XX CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 03/03/2016 04:32:09 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 2,213 CC CDS (total) :: 2,154 CC Genes (coding) :: 2,082 CC CDS (coding) :: 2,082 CC Genes (RNA) :: 59 CC rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC tRNAs :: 52 CC ncRNAs :: 4 CC Pseudo Genes (total) :: 72 CC Pseudo Genes (ambiguous residues) :: 0 of 72 CC Pseudo Genes (frameshifted) :: 16 of 72 CC Pseudo Genes (incomplete) :: 57 of 72 CC Pseudo Genes (internal stop) :: 5 of 72 CC Pseudo Genes (multiple problems) :: 6 of 72 CC Genome Coverage :: 155x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 155x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..384 FT /organism="Neisseria sp. HMSC061B04" FT /host="Homo sapiens" FT /strain="HMSC061B04" FT /mol_type="genomic DNA" FT /isolation_source="sputum" FT /db_xref="taxon:1715140" XX CO join(LTQL01000094.1:1..384) // ID KV830216; SV 1; linear; genomic DNA; CON; PRO; 356 BP. XX AC KV830216; LTQL01000000; XX PR Project:PRJNA296268; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Neisseria sp. HMSC061B04 genomic scaffold Scaffold107, whole genome shotgun DE sequence. XX KW . XX OS Neisseria sp. HMSC061B04 OC Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Neisseriaceae; OC Neisseria; unclassified Neisseria. XX RN [1] RP 1-356 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (09-FEB-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; f374ee45aab75f6b1a2d4b77ce2be20f. DR ENA; LTQL01000000; SET. DR ENA; LTQL00000000; SET. DR BioSample; SAMN04498636. XX CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 03/03/2016 04:32:09 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 2,213 CC CDS (total) :: 2,154 CC Genes (coding) :: 2,082 CC CDS (coding) :: 2,082 CC Genes (RNA) :: 59 CC rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC tRNAs :: 52 CC ncRNAs :: 4 CC Pseudo Genes (total) :: 72 CC Pseudo Genes (ambiguous residues) :: 0 of 72 CC Pseudo Genes (frameshifted) :: 16 of 72 CC Pseudo Genes (incomplete) :: 57 of 72 CC Pseudo Genes (internal stop) :: 5 of 72 CC Pseudo Genes (multiple problems) :: 6 of 72 CC Genome Coverage :: 155x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 155x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..356 FT /organism="Neisseria sp. HMSC061B04" FT /host="Homo sapiens" FT /strain="HMSC061B04" FT /mol_type="genomic DNA" FT /isolation_source="sputum" FT /db_xref="taxon:1715140" XX CO join(LTQL01000001.1:1..356) // ID KV830217; SV 1; linear; genomic DNA; CON; PRO; 230 BP. XX AC KV830217; LTQL01000000; XX PR Project:PRJNA296268; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Neisseria sp. HMSC061B04 genomic scaffold Scaffold113, whole genome shotgun DE sequence. XX KW . XX OS Neisseria sp. HMSC061B04 OC Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Neisseriaceae; OC Neisseria; unclassified Neisseria. XX RN [1] RP 1-230 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (09-FEB-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; 9c7a10714866c23ccd63ba62db121f58. DR ENA; LTQL01000000; SET. DR ENA; LTQL00000000; SET. DR BioSample; SAMN04498636. XX CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 03/03/2016 04:32:09 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 2,213 CC CDS (total) :: 2,154 CC Genes (coding) :: 2,082 CC CDS (coding) :: 2,082 CC Genes (RNA) :: 59 CC rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC tRNAs :: 52 CC ncRNAs :: 4 CC Pseudo Genes (total) :: 72 CC Pseudo Genes (ambiguous residues) :: 0 of 72 CC Pseudo Genes (frameshifted) :: 16 of 72 CC Pseudo Genes (incomplete) :: 57 of 72 CC Pseudo Genes (internal stop) :: 5 of 72 CC Pseudo Genes (multiple problems) :: 6 of 72 CC Genome Coverage :: 155x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 155x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..230 FT /organism="Neisseria sp. HMSC061B04" FT /host="Homo sapiens" FT /strain="HMSC061B04" FT /mol_type="genomic DNA" FT /isolation_source="sputum" FT /db_xref="taxon:1715140" XX CO join(LTQL01000002.1:1..230) // ID KV830218; SV 1; linear; genomic DNA; CON; PRO; 5697 BP. XX AC KV830218; LTQL01000000; XX PR Project:PRJNA296268; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Neisseria sp. HMSC061B04 genomic scaffold Scaffold116, whole genome shotgun DE sequence. XX KW . XX OS Neisseria sp. HMSC061B04 OC Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Neisseriaceae; OC Neisseria; unclassified Neisseria. XX RN [1] RP 1-5697 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (09-FEB-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; 43106ccbbe8fa4a7266148348d025af8. DR ENA; LTQL01000000; SET. DR ENA; LTQL00000000; SET. DR BioSample; SAMN04498636. XX CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 03/03/2016 04:32:09 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 2,213 CC CDS (total) :: 2,154 CC Genes (coding) :: 2,082 CC CDS (coding) :: 2,082 CC Genes (RNA) :: 59 CC rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC tRNAs :: 52 CC ncRNAs :: 4 CC Pseudo Genes (total) :: 72 CC Pseudo Genes (ambiguous residues) :: 0 of 72 CC Pseudo Genes (frameshifted) :: 16 of 72 CC Pseudo Genes (incomplete) :: 57 of 72 CC Pseudo Genes (internal stop) :: 5 of 72 CC Pseudo Genes (multiple problems) :: 6 of 72 CC Genome Coverage :: 155x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 155x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..5697 FT /organism="Neisseria sp. HMSC061B04" FT /host="Homo sapiens" FT /strain="HMSC061B04" FT /mol_type="genomic DNA" FT /isolation_source="sputum" FT /db_xref="taxon:1715140" XX CO join(LTQL01000003.1:1..5697) // ID KV830219; SV 1; linear; genomic DNA; CON; PRO; 299 BP. XX AC KV830219; LTQL01000000; XX PR Project:PRJNA296268; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Neisseria sp. HMSC061B04 genomic scaffold Scaffold118, whole genome shotgun DE sequence. XX KW . XX OS Neisseria sp. HMSC061B04 OC Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Neisseriaceae; OC Neisseria; unclassified Neisseria. XX RN [1] RP 1-299 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (09-FEB-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; ecc2ad8562099c85fad85691d8475ff3. DR ENA; LTQL01000000; SET. DR ENA; LTQL00000000; SET. DR BioSample; SAMN04498636. XX CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 03/03/2016 04:32:09 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 2,213 CC CDS (total) :: 2,154 CC Genes (coding) :: 2,082 CC CDS (coding) :: 2,082 CC Genes (RNA) :: 59 CC rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC tRNAs :: 52 CC ncRNAs :: 4 CC Pseudo Genes (total) :: 72 CC Pseudo Genes (ambiguous residues) :: 0 of 72 CC Pseudo Genes (frameshifted) :: 16 of 72 CC Pseudo Genes (incomplete) :: 57 of 72 CC Pseudo Genes (internal stop) :: 5 of 72 CC Pseudo Genes (multiple problems) :: 6 of 72 CC Genome Coverage :: 155x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 155x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..299 FT /organism="Neisseria sp. HMSC061B04" FT /host="Homo sapiens" FT /strain="HMSC061B04" FT /mol_type="genomic DNA" FT /isolation_source="sputum" FT /db_xref="taxon:1715140" XX CO join(LTQL01000004.1:1..299) // ID KV830220; SV 1; linear; genomic DNA; CON; PRO; 312 BP. XX AC KV830220; LTQL01000000; XX PR Project:PRJNA296268; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Neisseria sp. HMSC061B04 genomic scaffold Scaffold122, whole genome shotgun DE sequence. XX KW . XX OS Neisseria sp. HMSC061B04 OC Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Neisseriaceae; OC Neisseria; unclassified Neisseria. XX RN [1] RP 1-312 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (09-FEB-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; 882b073227a46411ad749ab372ca4618. DR ENA; LTQL01000000; SET. DR ENA; LTQL00000000; SET. DR BioSample; SAMN04498636. XX CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 03/03/2016 04:32:09 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 2,213 CC CDS (total) :: 2,154 CC Genes (coding) :: 2,082 CC CDS (coding) :: 2,082 CC Genes (RNA) :: 59 CC rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC tRNAs :: 52 CC ncRNAs :: 4 CC Pseudo Genes (total) :: 72 CC Pseudo Genes (ambiguous residues) :: 0 of 72 CC Pseudo Genes (frameshifted) :: 16 of 72 CC Pseudo Genes (incomplete) :: 57 of 72 CC Pseudo Genes (internal stop) :: 5 of 72 CC Pseudo Genes (multiple problems) :: 6 of 72 CC Genome Coverage :: 155x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 155x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..312 FT /organism="Neisseria sp. HMSC061B04" FT /host="Homo sapiens" FT /strain="HMSC061B04" FT /mol_type="genomic DNA" FT /isolation_source="sputum" FT /db_xref="taxon:1715140" XX CO join(LTQL01000007.1:1..312) // ID KV830221; SV 1; linear; genomic DNA; CON; PRO; 16887 BP. XX AC KV830221; LTQL01000000; XX PR Project:PRJNA296268; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Neisseria sp. HMSC061B04 genomic scaffold Scaffold139, whole genome shotgun DE sequence. XX KW . XX OS Neisseria sp. HMSC061B04 OC Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Neisseriaceae; OC Neisseria; unclassified Neisseria. XX RN [1] RP 1-16887 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (09-FEB-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; 61b742625e5c6741268609705dfb5a74. DR ENA; LTQL01000000; SET. DR ENA; LTQL00000000; SET. DR BioSample; SAMN04498636. XX CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 03/03/2016 04:32:09 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 2,213 CC CDS (total) :: 2,154 CC Genes (coding) :: 2,082 CC CDS (coding) :: 2,082 CC Genes (RNA) :: 59 CC rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC tRNAs :: 52 CC ncRNAs :: 4 CC Pseudo Genes (total) :: 72 CC Pseudo Genes (ambiguous residues) :: 0 of 72 CC Pseudo Genes (frameshifted) :: 16 of 72 CC Pseudo Genes (incomplete) :: 57 of 72 CC Pseudo Genes (internal stop) :: 5 of 72 CC Pseudo Genes (multiple problems) :: 6 of 72 CC Genome Coverage :: 155x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 155x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..16887 FT /organism="Neisseria sp. HMSC061B04" FT /host="Homo sapiens" FT /strain="HMSC061B04" FT /mol_type="genomic DNA" FT /isolation_source="sputum" FT /db_xref="taxon:1715140" FT assembly_gap 2231..2330 FT /estimated_length=unknown FT /gap_type="within scaffold" FT /linkage_evidence="paired-ends" XX CO join(LTQL01000009.1:1..2230,gap(unk100),LTQL01000010.1:1..14557) // ID KV830222; SV 1; linear; genomic DNA; CON; PRO; 388 BP. XX AC KV830222; LTQL01000000; XX PR Project:PRJNA296268; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Neisseria sp. HMSC061B04 genomic scaffold Scaffold141, whole genome shotgun DE sequence. XX KW . XX OS Neisseria sp. HMSC061B04 OC Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Neisseriaceae; OC Neisseria; unclassified Neisseria. XX RN [1] RP 1-388 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (09-FEB-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; 98e641d1922f14d09780ce89acf0bc97. DR ENA; LTQL01000000; SET. DR ENA; LTQL00000000; SET. DR BioSample; SAMN04498636. XX CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 03/03/2016 04:32:09 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 2,213 CC CDS (total) :: 2,154 CC Genes (coding) :: 2,082 CC CDS (coding) :: 2,082 CC Genes (RNA) :: 59 CC rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC tRNAs :: 52 CC ncRNAs :: 4 CC Pseudo Genes (total) :: 72 CC Pseudo Genes (ambiguous residues) :: 0 of 72 CC Pseudo Genes (frameshifted) :: 16 of 72 CC Pseudo Genes (incomplete) :: 57 of 72 CC Pseudo Genes (internal stop) :: 5 of 72 CC Pseudo Genes (multiple problems) :: 6 of 72 CC Genome Coverage :: 155x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 155x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..388 FT /organism="Neisseria sp. HMSC061B04" FT /host="Homo sapiens" FT /strain="HMSC061B04" FT /mol_type="genomic DNA" FT /isolation_source="sputum" FT /db_xref="taxon:1715140" XX CO join(LTQL01000012.1:1..388) // ID KV830223; SV 1; linear; genomic DNA; CON; PRO; 12448 BP. XX AC KV830223; LTQL01000000; XX PR Project:PRJNA296268; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Neisseria sp. HMSC061B04 genomic scaffold Scaffold149, whole genome shotgun DE sequence. XX KW . XX OS Neisseria sp. HMSC061B04 OC Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Neisseriaceae; OC Neisseria; unclassified Neisseria. XX RN [1] RP 1-12448 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (09-FEB-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; 2ff17e67b293ef5e750e6bac850c9c51. DR ENA; LTQL01000000; SET. DR ENA; LTQL00000000; SET. DR BioSample; SAMN04498636. XX CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 03/03/2016 04:32:09 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 2,213 CC CDS (total) :: 2,154 CC Genes (coding) :: 2,082 CC CDS (coding) :: 2,082 CC Genes (RNA) :: 59 CC rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC tRNAs :: 52 CC ncRNAs :: 4 CC Pseudo Genes (total) :: 72 CC Pseudo Genes (ambiguous residues) :: 0 of 72 CC Pseudo Genes (frameshifted) :: 16 of 72 CC Pseudo Genes (incomplete) :: 57 of 72 CC Pseudo Genes (internal stop) :: 5 of 72 CC Pseudo Genes (multiple problems) :: 6 of 72 CC Genome Coverage :: 155x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 155x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..12448 FT /organism="Neisseria sp. HMSC061B04" FT /host="Homo sapiens" FT /strain="HMSC061B04" FT /mol_type="genomic DNA" FT /isolation_source="sputum" FT /db_xref="taxon:1715140" FT assembly_gap 7248..7347 FT /estimated_length=unknown FT /gap_type="within scaffold" FT /linkage_evidence="paired-ends" FT assembly_gap 7776..7875 FT /estimated_length=unknown FT /gap_type="within scaffold" FT /linkage_evidence="paired-ends" XX CO join(LTQL01000013.1:1..7247,gap(unk100),LTQL01000014.1:1..428,gap(unk100), CO LTQL01000015.1:1..4573) // ID KV830224; SV 1; linear; genomic DNA; CON; PRO; 165547 BP. XX AC KV830224; LTQL01000000; XX PR Project:PRJNA296268; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Neisseria sp. HMSC061B04 genomic scaffold Scaffold159, whole genome shotgun DE sequence. XX KW . XX OS Neisseria sp. HMSC061B04 OC Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Neisseriaceae; OC Neisseria; unclassified Neisseria. XX RN [1] RP 1-165547 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (09-FEB-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; c2b18d27c7bcd8decdca9f7e0bb13110. DR ENA; LTQL01000000; SET. DR ENA; LTQL00000000; SET. DR BioSample; SAMN04498636. XX CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 03/03/2016 04:32:09 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 2,213 CC CDS (total) :: 2,154 CC Genes (coding) :: 2,082 CC CDS (coding) :: 2,082 CC Genes (RNA) :: 59 CC rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC tRNAs :: 52 CC ncRNAs :: 4 CC Pseudo Genes (total) :: 72 CC Pseudo Genes (ambiguous residues) :: 0 of 72 CC Pseudo Genes (frameshifted) :: 16 of 72 CC Pseudo Genes (incomplete) :: 57 of 72 CC Pseudo Genes (internal stop) :: 5 of 72 CC Pseudo Genes (multiple problems) :: 6 of 72 CC Genome Coverage :: 155x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 155x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..165547 FT /organism="Neisseria sp. HMSC061B04" FT /host="Homo sapiens" FT /strain="HMSC061B04" FT /mol_type="genomic DNA" FT /isolation_source="sputum" FT /db_xref="taxon:1715140" FT assembly_gap 95726..95825 FT /estimated_length=unknown FT /gap_type="within scaffold" FT /linkage_evidence="paired-ends" XX CO join(LTQL01000016.1:1..95725,gap(unk100),LTQL01000017.1:1..69722) // ID KV830225; SV 1; linear; genomic DNA; CON; PRO; 1527 BP. XX AC KV830225; LTQL01000000; XX PR Project:PRJNA296268; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Neisseria sp. HMSC061B04 genomic scaffold Scaffold173, whole genome shotgun DE sequence. XX KW . XX OS Neisseria sp. HMSC061B04 OC Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Neisseriaceae; OC Neisseria; unclassified Neisseria. XX RN [1] RP 1-1527 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (09-FEB-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; 002e6a039cb6a2ef40f3b7cbd4f57124. DR ENA; LTQL01000000; SET. DR ENA; LTQL00000000; SET. DR BioSample; SAMN04498636. XX CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 03/03/2016 04:32:09 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 2,213 CC CDS (total) :: 2,154 CC Genes (coding) :: 2,082 CC CDS (coding) :: 2,082 CC Genes (RNA) :: 59 CC rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC tRNAs :: 52 CC ncRNAs :: 4 CC Pseudo Genes (total) :: 72 CC Pseudo Genes (ambiguous residues) :: 0 of 72 CC Pseudo Genes (frameshifted) :: 16 of 72 CC Pseudo Genes (incomplete) :: 57 of 72 CC Pseudo Genes (internal stop) :: 5 of 72 CC Pseudo Genes (multiple problems) :: 6 of 72 CC Genome Coverage :: 155x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 155x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..1527 FT /organism="Neisseria sp. HMSC061B04" FT /host="Homo sapiens" FT /strain="HMSC061B04" FT /mol_type="genomic DNA" FT /isolation_source="sputum" FT /db_xref="taxon:1715140" XX CO join(LTQL01000021.1:1..1527) // ID KV830226; SV 1; linear; genomic DNA; CON; PRO; 327 BP. XX AC KV830226; LTQL01000000; XX PR Project:PRJNA296268; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Neisseria sp. HMSC061B04 genomic scaffold Scaffold177, whole genome shotgun DE sequence. XX KW . XX OS Neisseria sp. HMSC061B04 OC Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Neisseriaceae; OC Neisseria; unclassified Neisseria. XX RN [1] RP 1-327 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (09-FEB-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; 8176a18fe4b91e48ae745678623b1d95. DR ENA; LTQL01000000; SET. DR ENA; LTQL00000000; SET. DR BioSample; SAMN04498636. XX CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 03/03/2016 04:32:09 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 2,213 CC CDS (total) :: 2,154 CC Genes (coding) :: 2,082 CC CDS (coding) :: 2,082 CC Genes (RNA) :: 59 CC rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC tRNAs :: 52 CC ncRNAs :: 4 CC Pseudo Genes (total) :: 72 CC Pseudo Genes (ambiguous residues) :: 0 of 72 CC Pseudo Genes (frameshifted) :: 16 of 72 CC Pseudo Genes (incomplete) :: 57 of 72 CC Pseudo Genes (internal stop) :: 5 of 72 CC Pseudo Genes (multiple problems) :: 6 of 72 CC Genome Coverage :: 155x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 155x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..327 FT /organism="Neisseria sp. HMSC061B04" FT /host="Homo sapiens" FT /strain="HMSC061B04" FT /mol_type="genomic DNA" FT /isolation_source="sputum" FT /db_xref="taxon:1715140" XX CO join(LTQL01000022.1:1..327) // ID KV830227; SV 1; linear; genomic DNA; CON; PRO; 470 BP. XX AC KV830227; LTQL01000000; XX PR Project:PRJNA296268; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Neisseria sp. HMSC061B04 genomic scaffold Scaffold183, whole genome shotgun DE sequence. XX KW . XX OS Neisseria sp. HMSC061B04 OC Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Neisseriaceae; OC Neisseria; unclassified Neisseria. XX RN [1] RP 1-470 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (09-FEB-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; c66aca98da99c34e7c0041a77bc0839b. DR ENA; LTQL01000000; SET. DR ENA; LTQL00000000; SET. DR BioSample; SAMN04498636. XX CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 03/03/2016 04:32:09 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 2,213 CC CDS (total) :: 2,154 CC Genes (coding) :: 2,082 CC CDS (coding) :: 2,082 CC Genes (RNA) :: 59 CC rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC tRNAs :: 52 CC ncRNAs :: 4 CC Pseudo Genes (total) :: 72 CC Pseudo Genes (ambiguous residues) :: 0 of 72 CC Pseudo Genes (frameshifted) :: 16 of 72 CC Pseudo Genes (incomplete) :: 57 of 72 CC Pseudo Genes (internal stop) :: 5 of 72 CC Pseudo Genes (multiple problems) :: 6 of 72 CC Genome Coverage :: 155x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 155x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..470 FT /organism="Neisseria sp. HMSC061B04" FT /host="Homo sapiens" FT /strain="HMSC061B04" FT /mol_type="genomic DNA" FT /isolation_source="sputum" FT /db_xref="taxon:1715140" XX CO join(LTQL01000023.1:1..470) // ID KV830228; SV 1; linear; genomic DNA; CON; PRO; 288 BP. XX AC KV830228; LTQL01000000; XX PR Project:PRJNA296268; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Neisseria sp. HMSC061B04 genomic scaffold Scaffold184, whole genome shotgun DE sequence. XX KW . XX OS Neisseria sp. HMSC061B04 OC Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Neisseriaceae; OC Neisseria; unclassified Neisseria. XX RN [1] RP 1-288 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (09-FEB-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; 86a0dd1dacec001e7024750303e9a642. DR ENA; LTQL01000000; SET. DR ENA; LTQL00000000; SET. DR BioSample; SAMN04498636. XX CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 03/03/2016 04:32:09 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 2,213 CC CDS (total) :: 2,154 CC Genes (coding) :: 2,082 CC CDS (coding) :: 2,082 CC Genes (RNA) :: 59 CC rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC tRNAs :: 52 CC ncRNAs :: 4 CC Pseudo Genes (total) :: 72 CC Pseudo Genes (ambiguous residues) :: 0 of 72 CC Pseudo Genes (frameshifted) :: 16 of 72 CC Pseudo Genes (incomplete) :: 57 of 72 CC Pseudo Genes (internal stop) :: 5 of 72 CC Pseudo Genes (multiple problems) :: 6 of 72 CC Genome Coverage :: 155x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 155x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..288 FT /organism="Neisseria sp. HMSC061B04" FT /host="Homo sapiens" FT /strain="HMSC061B04" FT /mol_type="genomic DNA" FT /isolation_source="sputum" FT /db_xref="taxon:1715140" XX CO join(LTQL01000024.1:1..288) // ID KV830229; SV 1; linear; genomic DNA; CON; PRO; 2259 BP. XX AC KV830229; LTQL01000000; XX PR Project:PRJNA296268; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Neisseria sp. HMSC061B04 genomic scaffold Scaffold185, whole genome shotgun DE sequence. XX KW . XX OS Neisseria sp. HMSC061B04 OC Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Neisseriaceae; OC Neisseria; unclassified Neisseria. XX RN [1] RP 1-2259 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (09-FEB-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; a51ba7364bbae9acd1b2f14f7d222cc4. DR ENA; LTQL01000000; SET. DR ENA; LTQL00000000; SET. DR BioSample; SAMN04498636. XX CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 03/03/2016 04:32:09 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 2,213 CC CDS (total) :: 2,154 CC Genes (coding) :: 2,082 CC CDS (coding) :: 2,082 CC Genes (RNA) :: 59 CC rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC tRNAs :: 52 CC ncRNAs :: 4 CC Pseudo Genes (total) :: 72 CC Pseudo Genes (ambiguous residues) :: 0 of 72 CC Pseudo Genes (frameshifted) :: 16 of 72 CC Pseudo Genes (incomplete) :: 57 of 72 CC Pseudo Genes (internal stop) :: 5 of 72 CC Pseudo Genes (multiple problems) :: 6 of 72 CC Genome Coverage :: 155x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 155x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..2259 FT /organism="Neisseria sp. HMSC061B04" FT /host="Homo sapiens" FT /strain="HMSC061B04" FT /mol_type="genomic DNA" FT /isolation_source="sputum" FT /db_xref="taxon:1715140" XX CO join(LTQL01000025.1:1..2259) // ID KV830230; SV 1; linear; genomic DNA; CON; PRO; 258 BP. XX AC KV830230; LTQL01000000; XX PR Project:PRJNA296268; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Neisseria sp. HMSC061B04 genomic scaffold Scaffold190, whole genome shotgun DE sequence. XX KW . XX OS Neisseria sp. HMSC061B04 OC Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Neisseriaceae; OC Neisseria; unclassified Neisseria. XX RN [1] RP 1-258 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (09-FEB-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; 68ff1bfe5bbc9eef5844d82581d8b366. DR ENA; LTQL01000000; SET. DR ENA; LTQL00000000; SET. DR BioSample; SAMN04498636. XX CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 03/03/2016 04:32:09 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 2,213 CC CDS (total) :: 2,154 CC Genes (coding) :: 2,082 CC CDS (coding) :: 2,082 CC Genes (RNA) :: 59 CC rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC tRNAs :: 52 CC ncRNAs :: 4 CC Pseudo Genes (total) :: 72 CC Pseudo Genes (ambiguous residues) :: 0 of 72 CC Pseudo Genes (frameshifted) :: 16 of 72 CC Pseudo Genes (incomplete) :: 57 of 72 CC Pseudo Genes (internal stop) :: 5 of 72 CC Pseudo Genes (multiple problems) :: 6 of 72 CC Genome Coverage :: 155x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 155x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..258 FT /organism="Neisseria sp. HMSC061B04" FT /host="Homo sapiens" FT /strain="HMSC061B04" FT /mol_type="genomic DNA" FT /isolation_source="sputum" FT /db_xref="taxon:1715140" XX CO join(LTQL01000026.1:1..258) // ID KV830231; SV 1; linear; genomic DNA; CON; PRO; 36204 BP. XX AC KV830231; LTQL01000000; XX PR Project:PRJNA296268; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Neisseria sp. HMSC061B04 genomic scaffold Scaffold195, whole genome shotgun DE sequence. XX KW . XX OS Neisseria sp. HMSC061B04 OC Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Neisseriaceae; OC Neisseria; unclassified Neisseria. XX RN [1] RP 1-36204 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (09-FEB-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; d3033e6c50390c8d96965d6d4ddaf97c. DR ENA; LTQL01000000; SET. DR ENA; LTQL00000000; SET. DR BioSample; SAMN04498636. XX CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 03/03/2016 04:32:09 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 2,213 CC CDS (total) :: 2,154 CC Genes (coding) :: 2,082 CC CDS (coding) :: 2,082 CC Genes (RNA) :: 59 CC rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC tRNAs :: 52 CC ncRNAs :: 4 CC Pseudo Genes (total) :: 72 CC Pseudo Genes (ambiguous residues) :: 0 of 72 CC Pseudo Genes (frameshifted) :: 16 of 72 CC Pseudo Genes (incomplete) :: 57 of 72 CC Pseudo Genes (internal stop) :: 5 of 72 CC Pseudo Genes (multiple problems) :: 6 of 72 CC Genome Coverage :: 155x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 155x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..36204 FT /organism="Neisseria sp. HMSC061B04" FT /host="Homo sapiens" FT /strain="HMSC061B04" FT /mol_type="genomic DNA" FT /isolation_source="sputum" FT /db_xref="taxon:1715140" XX CO join(LTQL01000027.1:1..36204) // ID KV830232; SV 1; linear; genomic DNA; CON; PRO; 151746 BP. XX AC KV830232; LTQL01000000; XX PR Project:PRJNA296268; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Neisseria sp. HMSC061B04 genomic scaffold Scaffold202, whole genome shotgun DE sequence. XX KW . XX OS Neisseria sp. HMSC061B04 OC Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Neisseriaceae; OC Neisseria; unclassified Neisseria. XX RN [1] RP 1-151746 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (09-FEB-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; f5b5e6c9365c15d7d5bd78c577bd7a66. DR ENA; LTQL01000000; SET. DR ENA; LTQL00000000; SET. DR BioSample; SAMN04498636. XX CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 03/03/2016 04:32:09 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 2,213 CC CDS (total) :: 2,154 CC Genes (coding) :: 2,082 CC CDS (coding) :: 2,082 CC Genes (RNA) :: 59 CC rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC tRNAs :: 52 CC ncRNAs :: 4 CC Pseudo Genes (total) :: 72 CC Pseudo Genes (ambiguous residues) :: 0 of 72 CC Pseudo Genes (frameshifted) :: 16 of 72 CC Pseudo Genes (incomplete) :: 57 of 72 CC Pseudo Genes (internal stop) :: 5 of 72 CC Pseudo Genes (multiple problems) :: 6 of 72 CC Genome Coverage :: 155x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 155x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..151746 FT /organism="Neisseria sp. HMSC061B04" FT /host="Homo sapiens" FT /strain="HMSC061B04" FT /mol_type="genomic DNA" FT /isolation_source="sputum" FT /db_xref="taxon:1715140" FT assembly_gap 74733..74832 FT /estimated_length=unknown FT /gap_type="within scaffold" FT /linkage_evidence="paired-ends" FT assembly_gap 151083..151182 FT /estimated_length=unknown FT /gap_type="within scaffold" FT /linkage_evidence="paired-ends" XX CO join(LTQL01000029.1:1..74732,gap(unk100),LTQL01000030.1:1..76250, CO gap(unk100),LTQL01000031.1:1..564) // ID KV830233; SV 1; linear; genomic DNA; CON; PRO; 348 BP. XX AC KV830233; LTQL01000000; XX PR Project:PRJNA296268; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Neisseria sp. HMSC061B04 genomic scaffold Scaffold205, whole genome shotgun DE sequence. XX KW . XX OS Neisseria sp. HMSC061B04 OC Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Neisseriaceae; OC Neisseria; unclassified Neisseria. XX RN [1] RP 1-348 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (09-FEB-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; 506cebd1db6c072e9685f29a4695e902. DR ENA; LTQL01000000; SET. DR ENA; LTQL00000000; SET. DR BioSample; SAMN04498636. XX CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 03/03/2016 04:32:09 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 2,213 CC CDS (total) :: 2,154 CC Genes (coding) :: 2,082 CC CDS (coding) :: 2,082 CC Genes (RNA) :: 59 CC rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC tRNAs :: 52 CC ncRNAs :: 4 CC Pseudo Genes (total) :: 72 CC Pseudo Genes (ambiguous residues) :: 0 of 72 CC Pseudo Genes (frameshifted) :: 16 of 72 CC Pseudo Genes (incomplete) :: 57 of 72 CC Pseudo Genes (internal stop) :: 5 of 72 CC Pseudo Genes (multiple problems) :: 6 of 72 CC Genome Coverage :: 155x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 155x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..348 FT /organism="Neisseria sp. HMSC061B04" FT /host="Homo sapiens" FT /strain="HMSC061B04" FT /mol_type="genomic DNA" FT /isolation_source="sputum" FT /db_xref="taxon:1715140" XX CO join(LTQL01000032.1:1..348) // ID KV830234; SV 1; linear; genomic DNA; CON; PRO; 510 BP. XX AC KV830234; LTQL01000000; XX PR Project:PRJNA296268; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Neisseria sp. HMSC061B04 genomic scaffold Scaffold238, whole genome shotgun DE sequence. XX KW . XX OS Neisseria sp. HMSC061B04 OC Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Neisseriaceae; OC Neisseria; unclassified Neisseria. XX RN [1] RP 1-510 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (09-FEB-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; f601e1acd2ed75c2ba0c422e27ce9694. DR ENA; LTQL01000000; SET. DR ENA; LTQL00000000; SET. DR BioSample; SAMN04498636. XX CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 03/03/2016 04:32:09 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 2,213 CC CDS (total) :: 2,154 CC Genes (coding) :: 2,082 CC CDS (coding) :: 2,082 CC Genes (RNA) :: 59 CC rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC tRNAs :: 52 CC ncRNAs :: 4 CC Pseudo Genes (total) :: 72 CC Pseudo Genes (ambiguous residues) :: 0 of 72 CC Pseudo Genes (frameshifted) :: 16 of 72 CC Pseudo Genes (incomplete) :: 57 of 72 CC Pseudo Genes (internal stop) :: 5 of 72 CC Pseudo Genes (multiple problems) :: 6 of 72 CC Genome Coverage :: 155x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 155x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..510 FT /organism="Neisseria sp. HMSC061B04" FT /host="Homo sapiens" FT /strain="HMSC061B04" FT /mol_type="genomic DNA" FT /isolation_source="sputum" FT /db_xref="taxon:1715140" XX CO join(LTQL01000035.1:1..510) // ID KV830235; SV 1; linear; genomic DNA; CON; PRO; 2288 BP. XX AC KV830235; LTQL01000000; XX PR Project:PRJNA296268; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Neisseria sp. HMSC061B04 genomic scaffold Scaffold243, whole genome shotgun DE sequence. XX KW . XX OS Neisseria sp. HMSC061B04 OC Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Neisseriaceae; OC Neisseria; unclassified Neisseria. XX RN [1] RP 1-2288 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (09-FEB-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; 471671b68437c424a50de1fe85dad39c. DR ENA; LTQL01000000; SET. DR ENA; LTQL00000000; SET. DR BioSample; SAMN04498636. XX CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 03/03/2016 04:32:09 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 2,213 CC CDS (total) :: 2,154 CC Genes (coding) :: 2,082 CC CDS (coding) :: 2,082 CC Genes (RNA) :: 59 CC rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC tRNAs :: 52 CC ncRNAs :: 4 CC Pseudo Genes (total) :: 72 CC Pseudo Genes (ambiguous residues) :: 0 of 72 CC Pseudo Genes (frameshifted) :: 16 of 72 CC Pseudo Genes (incomplete) :: 57 of 72 CC Pseudo Genes (internal stop) :: 5 of 72 CC Pseudo Genes (multiple problems) :: 6 of 72 CC Genome Coverage :: 155x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 155x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..2288 FT /organism="Neisseria sp. HMSC061B04" FT /host="Homo sapiens" FT /strain="HMSC061B04" FT /mol_type="genomic DNA" FT /isolation_source="sputum" FT /db_xref="taxon:1715140" XX CO join(LTQL01000039.1:1..2288) // ID KV830236; SV 1; linear; genomic DNA; CON; PRO; 613 BP. XX AC KV830236; LTQL01000000; XX PR Project:PRJNA296268; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Neisseria sp. HMSC061B04 genomic scaffold Scaffold249, whole genome shotgun DE sequence. XX KW . XX OS Neisseria sp. HMSC061B04 OC Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Neisseriaceae; OC Neisseria; unclassified Neisseria. XX RN [1] RP 1-613 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (09-FEB-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; af731311b6f54ee2b3cdde5f688ccd99. DR ENA; LTQL01000000; SET. DR ENA; LTQL00000000; SET. DR BioSample; SAMN04498636. XX CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 03/03/2016 04:32:09 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 2,213 CC CDS (total) :: 2,154 CC Genes (coding) :: 2,082 CC CDS (coding) :: 2,082 CC Genes (RNA) :: 59 CC rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC tRNAs :: 52 CC ncRNAs :: 4 CC Pseudo Genes (total) :: 72 CC Pseudo Genes (ambiguous residues) :: 0 of 72 CC Pseudo Genes (frameshifted) :: 16 of 72 CC Pseudo Genes (incomplete) :: 57 of 72 CC Pseudo Genes (internal stop) :: 5 of 72 CC Pseudo Genes (multiple problems) :: 6 of 72 CC Genome Coverage :: 155x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 155x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..613 FT /organism="Neisseria sp. HMSC061B04" FT /host="Homo sapiens" FT /strain="HMSC061B04" FT /mol_type="genomic DNA" FT /isolation_source="sputum" FT /db_xref="taxon:1715140" XX CO join(LTQL01000040.1:1..613) // ID KV830237; SV 1; linear; genomic DNA; CON; PRO; 219 BP. XX AC KV830237; LTQL01000000; XX PR Project:PRJNA296268; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Neisseria sp. HMSC061B04 genomic scaffold Scaffold254, whole genome shotgun DE sequence. XX KW . XX OS Neisseria sp. HMSC061B04 OC Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Neisseriaceae; OC Neisseria; unclassified Neisseria. XX RN [1] RP 1-219 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (09-FEB-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; eb46fcf1a454daec85c086af7c0c26d9. DR ENA; LTQL01000000; SET. DR ENA; LTQL00000000; SET. DR BioSample; SAMN04498636. XX CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 03/03/2016 04:32:09 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 2,213 CC CDS (total) :: 2,154 CC Genes (coding) :: 2,082 CC CDS (coding) :: 2,082 CC Genes (RNA) :: 59 CC rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC tRNAs :: 52 CC ncRNAs :: 4 CC Pseudo Genes (total) :: 72 CC Pseudo Genes (ambiguous residues) :: 0 of 72 CC Pseudo Genes (frameshifted) :: 16 of 72 CC Pseudo Genes (incomplete) :: 57 of 72 CC Pseudo Genes (internal stop) :: 5 of 72 CC Pseudo Genes (multiple problems) :: 6 of 72 CC Genome Coverage :: 155x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 155x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..219 FT /organism="Neisseria sp. HMSC061B04" FT /host="Homo sapiens" FT /strain="HMSC061B04" FT /mol_type="genomic DNA" FT /isolation_source="sputum" FT /db_xref="taxon:1715140" XX CO join(LTQL01000042.1:1..219) // ID KV830238; SV 1; linear; genomic DNA; CON; PRO; 510 BP. XX AC KV830238; LTQL01000000; XX PR Project:PRJNA296268; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Neisseria sp. HMSC061B04 genomic scaffold Scaffold259, whole genome shotgun DE sequence. XX KW . XX OS Neisseria sp. HMSC061B04 OC Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Neisseriaceae; OC Neisseria; unclassified Neisseria. XX RN [1] RP 1-510 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (09-FEB-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; 49559b25d6ed457aa0372402527b7e79. DR ENA; LTQL01000000; SET. DR ENA; LTQL00000000; SET. DR BioSample; SAMN04498636. XX CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 03/03/2016 04:32:09 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 2,213 CC CDS (total) :: 2,154 CC Genes (coding) :: 2,082 CC CDS (coding) :: 2,082 CC Genes (RNA) :: 59 CC rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC tRNAs :: 52 CC ncRNAs :: 4 CC Pseudo Genes (total) :: 72 CC Pseudo Genes (ambiguous residues) :: 0 of 72 CC Pseudo Genes (frameshifted) :: 16 of 72 CC Pseudo Genes (incomplete) :: 57 of 72 CC Pseudo Genes (internal stop) :: 5 of 72 CC Pseudo Genes (multiple problems) :: 6 of 72 CC Genome Coverage :: 155x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 155x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..510 FT /organism="Neisseria sp. HMSC061B04" FT /host="Homo sapiens" FT /strain="HMSC061B04" FT /mol_type="genomic DNA" FT /isolation_source="sputum" FT /db_xref="taxon:1715140" XX CO join(LTQL01000043.1:1..510) // ID KV830239; SV 1; linear; genomic DNA; CON; PRO; 823 BP. XX AC KV830239; LTQL01000000; XX PR Project:PRJNA296268; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Neisseria sp. HMSC061B04 genomic scaffold Scaffold260, whole genome shotgun DE sequence. XX KW . XX OS Neisseria sp. HMSC061B04 OC Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Neisseriaceae; OC Neisseria; unclassified Neisseria. XX RN [1] RP 1-823 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (09-FEB-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; 8664ec562451e72d174ca0485324cd86. DR ENA; LTQL01000000; SET. DR ENA; LTQL00000000; SET. DR BioSample; SAMN04498636. XX CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 03/03/2016 04:32:09 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 2,213 CC CDS (total) :: 2,154 CC Genes (coding) :: 2,082 CC CDS (coding) :: 2,082 CC Genes (RNA) :: 59 CC rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC tRNAs :: 52 CC ncRNAs :: 4 CC Pseudo Genes (total) :: 72 CC Pseudo Genes (ambiguous residues) :: 0 of 72 CC Pseudo Genes (frameshifted) :: 16 of 72 CC Pseudo Genes (incomplete) :: 57 of 72 CC Pseudo Genes (internal stop) :: 5 of 72 CC Pseudo Genes (multiple problems) :: 6 of 72 CC Genome Coverage :: 155x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 155x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..823 FT /organism="Neisseria sp. HMSC061B04" FT /host="Homo sapiens" FT /strain="HMSC061B04" FT /mol_type="genomic DNA" FT /isolation_source="sputum" FT /db_xref="taxon:1715140" XX CO join(LTQL01000044.1:1..823) // ID KV830240; SV 1; linear; genomic DNA; CON; PRO; 49937 BP. XX AC KV830240; LTQL01000000; XX PR Project:PRJNA296268; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Neisseria sp. HMSC061B04 genomic scaffold Scaffold263, whole genome shotgun DE sequence. XX KW . XX OS Neisseria sp. HMSC061B04 OC Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Neisseriaceae; OC Neisseria; unclassified Neisseria. XX RN [1] RP 1-49937 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (09-FEB-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; 25fe1d143e4f6b3fc11397a5d650b72e. DR ENA; LTQL01000000; SET. DR ENA; LTQL00000000; SET. DR BioSample; SAMN04498636. XX CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 03/03/2016 04:32:09 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 2,213 CC CDS (total) :: 2,154 CC Genes (coding) :: 2,082 CC CDS (coding) :: 2,082 CC Genes (RNA) :: 59 CC rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC tRNAs :: 52 CC ncRNAs :: 4 CC Pseudo Genes (total) :: 72 CC Pseudo Genes (ambiguous residues) :: 0 of 72 CC Pseudo Genes (frameshifted) :: 16 of 72 CC Pseudo Genes (incomplete) :: 57 of 72 CC Pseudo Genes (internal stop) :: 5 of 72 CC Pseudo Genes (multiple problems) :: 6 of 72 CC Genome Coverage :: 155x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 155x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..49937 FT /organism="Neisseria sp. HMSC061B04" FT /host="Homo sapiens" FT /strain="HMSC061B04" FT /mol_type="genomic DNA" FT /isolation_source="sputum" FT /db_xref="taxon:1715140" XX CO join(LTQL01000045.1:1..49937) // ID KV830241; SV 1; linear; genomic DNA; CON; PRO; 348 BP. XX AC KV830241; LTQL01000000; XX PR Project:PRJNA296268; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Neisseria sp. HMSC061B04 genomic scaffold Scaffold265, whole genome shotgun DE sequence. XX KW . XX OS Neisseria sp. HMSC061B04 OC Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Neisseriaceae; OC Neisseria; unclassified Neisseria. XX RN [1] RP 1-348 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (09-FEB-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; bd7c00b21be7f8b7099a5a46014b885b. DR ENA; LTQL01000000; SET. DR ENA; LTQL00000000; SET. DR BioSample; SAMN04498636. XX CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 03/03/2016 04:32:09 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 2,213 CC CDS (total) :: 2,154 CC Genes (coding) :: 2,082 CC CDS (coding) :: 2,082 CC Genes (RNA) :: 59 CC rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC tRNAs :: 52 CC ncRNAs :: 4 CC Pseudo Genes (total) :: 72 CC Pseudo Genes (ambiguous residues) :: 0 of 72 CC Pseudo Genes (frameshifted) :: 16 of 72 CC Pseudo Genes (incomplete) :: 57 of 72 CC Pseudo Genes (internal stop) :: 5 of 72 CC Pseudo Genes (multiple problems) :: 6 of 72 CC Genome Coverage :: 155x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 155x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..348 FT /organism="Neisseria sp. HMSC061B04" FT /host="Homo sapiens" FT /strain="HMSC061B04" FT /mol_type="genomic DNA" FT /isolation_source="sputum" FT /db_xref="taxon:1715140" XX CO join(LTQL01000046.1:1..348) // ID KV830242; SV 1; linear; genomic DNA; CON; PRO; 822 BP. XX AC KV830242; LTQL01000000; XX PR Project:PRJNA296268; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Neisseria sp. HMSC061B04 genomic scaffold Scaffold282, whole genome shotgun DE sequence. XX KW . XX OS Neisseria sp. HMSC061B04 OC Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Neisseriaceae; OC Neisseria; unclassified Neisseria. XX RN [1] RP 1-822 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (09-FEB-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; 679dbbfc1306f64bd7a03680295828ca. DR ENA; LTQL01000000; SET. DR ENA; LTQL00000000; SET. DR BioSample; SAMN04498636. XX CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 03/03/2016 04:32:09 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 2,213 CC CDS (total) :: 2,154 CC Genes (coding) :: 2,082 CC CDS (coding) :: 2,082 CC Genes (RNA) :: 59 CC rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC tRNAs :: 52 CC ncRNAs :: 4 CC Pseudo Genes (total) :: 72 CC Pseudo Genes (ambiguous residues) :: 0 of 72 CC Pseudo Genes (frameshifted) :: 16 of 72 CC Pseudo Genes (incomplete) :: 57 of 72 CC Pseudo Genes (internal stop) :: 5 of 72 CC Pseudo Genes (multiple problems) :: 6 of 72 CC Genome Coverage :: 155x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 155x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..822 FT /organism="Neisseria sp. HMSC061B04" FT /host="Homo sapiens" FT /strain="HMSC061B04" FT /mol_type="genomic DNA" FT /isolation_source="sputum" FT /db_xref="taxon:1715140" XX CO join(LTQL01000047.1:1..822) // ID KV830243; SV 1; linear; genomic DNA; CON; PRO; 32874 BP. XX AC KV830243; LTQK01000000; XX PR Project:PRJNA296184; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Staphylococcus sp. HMSC061C10 genomic scaffold Scaffold0, whole genome DE shotgun sequence. XX KW . XX OS Staphylococcus sp. HMSC061C10 OC Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcaceae; OC Staphylococcus. XX RN [1] RP 1-32874 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (09-FEB-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; ad958db72bc65b2f6c7f0a0fe17468c0. DR ENA; LTQK01000000; SET. DR ENA; LTQK00000000; SET. DR BioSample; SAMN04498585. XX CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 03/03/2016 04:16:58 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 2,410 CC CDS (total) :: 2,382 CC Genes (coding) :: 2,324 CC CDS (coding) :: 2,324 CC Genes (RNA) :: 28 CC rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC tRNAs :: 21 CC ncRNAs :: 4 CC Pseudo Genes (total) :: 58 CC Pseudo Genes (ambiguous residues) :: 0 of 58 CC Pseudo Genes (frameshifted) :: 8 of 58 CC Pseudo Genes (incomplete) :: 44 of 58 CC Pseudo Genes (internal stop) :: 6 of 58 CC Genome Coverage :: 156x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 156x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..32874 FT /organism="Staphylococcus sp. HMSC061C10" FT /host="Homo sapiens" FT /strain="HMSC061C10" FT /mol_type="genomic DNA" FT /isolation_source="vaginal/rectal" FT /db_xref="taxon:1715056" XX CO join(LTQK01000001.1:1..32874) // ID KV830244; SV 1; linear; genomic DNA; CON; PRO; 2050 BP. XX AC KV830244; LTQK01000000; XX PR Project:PRJNA296184; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Staphylococcus sp. HMSC061C10 genomic scaffold Scaffold1, whole genome DE shotgun sequence. XX KW . XX OS Staphylococcus sp. HMSC061C10 OC Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcaceae; OC Staphylococcus. XX RN [1] RP 1-2050 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (09-FEB-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; 6cf86e89e4084ee77a543320f17b7fd8. DR ENA; LTQK01000000; SET. DR ENA; LTQK00000000; SET. DR BioSample; SAMN04498585. XX CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 03/03/2016 04:16:58 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 2,410 CC CDS (total) :: 2,382 CC Genes (coding) :: 2,324 CC CDS (coding) :: 2,324 CC Genes (RNA) :: 28 CC rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC tRNAs :: 21 CC ncRNAs :: 4 CC Pseudo Genes (total) :: 58 CC Pseudo Genes (ambiguous residues) :: 0 of 58 CC Pseudo Genes (frameshifted) :: 8 of 58 CC Pseudo Genes (incomplete) :: 44 of 58 CC Pseudo Genes (internal stop) :: 6 of 58 CC Genome Coverage :: 156x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 156x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..2050 FT /organism="Staphylococcus sp. HMSC061C10" FT /host="Homo sapiens" FT /strain="HMSC061C10" FT /mol_type="genomic DNA" FT /isolation_source="vaginal/rectal" FT /db_xref="taxon:1715056" XX CO join(LTQK01000002.1:1..2050) // ID KV830245; SV 1; linear; genomic DNA; CON; PRO; 4344 BP. XX AC KV830245; LTQK01000000; XX PR Project:PRJNA296184; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Staphylococcus sp. HMSC061C10 genomic scaffold Scaffold2, whole genome DE shotgun sequence. XX KW . XX OS Staphylococcus sp. HMSC061C10 OC Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcaceae; OC Staphylococcus. XX RN [1] RP 1-4344 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (09-FEB-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; b21c3f6ca4ff0a28e5b8816204448da0. DR ENA; LTQK01000000; SET. DR ENA; LTQK00000000; SET. DR BioSample; SAMN04498585. XX CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 03/03/2016 04:16:58 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 2,410 CC CDS (total) :: 2,382 CC Genes (coding) :: 2,324 CC CDS (coding) :: 2,324 CC Genes (RNA) :: 28 CC rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC tRNAs :: 21 CC ncRNAs :: 4 CC Pseudo Genes (total) :: 58 CC Pseudo Genes (ambiguous residues) :: 0 of 58 CC Pseudo Genes (frameshifted) :: 8 of 58 CC Pseudo Genes (incomplete) :: 44 of 58 CC Pseudo Genes (internal stop) :: 6 of 58 CC Genome Coverage :: 156x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 156x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..4344 FT /organism="Staphylococcus sp. HMSC061C10" FT /host="Homo sapiens" FT /strain="HMSC061C10" FT /mol_type="genomic DNA" FT /isolation_source="vaginal/rectal" FT /db_xref="taxon:1715056" XX CO join(LTQK01000022.1:1..4344) // ID KV830246; SV 1; linear; genomic DNA; CON; PRO; 3996 BP. XX AC KV830246; LTQK01000000; XX PR Project:PRJNA296184; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Staphylococcus sp. HMSC061C10 genomic scaffold Scaffold3, whole genome DE shotgun sequence. XX KW . XX OS Staphylococcus sp. HMSC061C10 OC Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcaceae; OC Staphylococcus. XX RN [1] RP 1-3996 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (09-FEB-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; 12b771ab8bf94575c72ee4dc4dd5dab0. DR ENA; LTQK01000000; SET. DR ENA; LTQK00000000; SET. DR BioSample; SAMN04498585. XX CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 03/03/2016 04:16:58 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 2,410 CC CDS (total) :: 2,382 CC Genes (coding) :: 2,324 CC CDS (coding) :: 2,324 CC Genes (RNA) :: 28 CC rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC tRNAs :: 21 CC ncRNAs :: 4 CC Pseudo Genes (total) :: 58 CC Pseudo Genes (ambiguous residues) :: 0 of 58 CC Pseudo Genes (frameshifted) :: 8 of 58 CC Pseudo Genes (incomplete) :: 44 of 58 CC Pseudo Genes (internal stop) :: 6 of 58 CC Genome Coverage :: 156x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 156x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..3996 FT /organism="Staphylococcus sp. HMSC061C10" FT /host="Homo sapiens" FT /strain="HMSC061C10" FT /mol_type="genomic DNA" FT /isolation_source="vaginal/rectal" FT /db_xref="taxon:1715056" XX CO join(LTQK01000050.1:1..3996) // ID KV830247; SV 1; linear; genomic DNA; CON; PRO; 2022 BP. XX AC KV830247; LTQK01000000; XX PR Project:PRJNA296184; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Staphylococcus sp. HMSC061C10 genomic scaffold Scaffold4, whole genome DE shotgun sequence. XX KW . XX OS Staphylococcus sp. HMSC061C10 OC Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcaceae; OC Staphylococcus. XX RN [1] RP 1-2022 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (09-FEB-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; 9b515fdcda04982e19578d75e9b03698. DR ENA; LTQK01000000; SET. DR ENA; LTQK00000000; SET. DR BioSample; SAMN04498585. XX CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 03/03/2016 04:16:58 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 2,410 CC CDS (total) :: 2,382 CC Genes (coding) :: 2,324 CC CDS (coding) :: 2,324 CC Genes (RNA) :: 28 CC rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC tRNAs :: 21 CC ncRNAs :: 4 CC Pseudo Genes (total) :: 58 CC Pseudo Genes (ambiguous residues) :: 0 of 58 CC Pseudo Genes (frameshifted) :: 8 of 58 CC Pseudo Genes (incomplete) :: 44 of 58 CC Pseudo Genes (internal stop) :: 6 of 58 CC Genome Coverage :: 156x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 156x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..2022 FT /organism="Staphylococcus sp. HMSC061C10" FT /host="Homo sapiens" FT /strain="HMSC061C10" FT /mol_type="genomic DNA" FT /isolation_source="vaginal/rectal" FT /db_xref="taxon:1715056" XX CO join(LTQK01000054.1:1..2022) // ID KV830248; SV 1; linear; genomic DNA; CON; PRO; 4574 BP. XX AC KV830248; LTQK01000000; XX PR Project:PRJNA296184; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Staphylococcus sp. HMSC061C10 genomic scaffold Scaffold5, whole genome DE shotgun sequence. XX KW . XX OS Staphylococcus sp. HMSC061C10 OC Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcaceae; OC Staphylococcus. XX RN [1] RP 1-4574 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (09-FEB-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; e0d32b67fe8978f546b6345d79f85b91. DR ENA; LTQK01000000; SET. DR ENA; LTQK00000000; SET. DR BioSample; SAMN04498585. XX CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 03/03/2016 04:16:58 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 2,410 CC CDS (total) :: 2,382 CC Genes (coding) :: 2,324 CC CDS (coding) :: 2,324 CC Genes (RNA) :: 28 CC rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC tRNAs :: 21 CC ncRNAs :: 4 CC Pseudo Genes (total) :: 58 CC Pseudo Genes (ambiguous residues) :: 0 of 58 CC Pseudo Genes (frameshifted) :: 8 of 58 CC Pseudo Genes (incomplete) :: 44 of 58 CC Pseudo Genes (internal stop) :: 6 of 58 CC Genome Coverage :: 156x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 156x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..4574 FT /organism="Staphylococcus sp. HMSC061C10" FT /host="Homo sapiens" FT /strain="HMSC061C10" FT /mol_type="genomic DNA" FT /isolation_source="vaginal/rectal" FT /db_xref="taxon:1715056" XX CO join(LTQK01000079.1:1..4574) // ID KV830249; SV 1; linear; genomic DNA; CON; PRO; 3535 BP. XX AC KV830249; LTQK01000000; XX PR Project:PRJNA296184; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Staphylococcus sp. HMSC061C10 genomic scaffold Scaffold6, whole genome DE shotgun sequence. XX KW . XX OS Staphylococcus sp. HMSC061C10 OC Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcaceae; OC Staphylococcus. XX RN [1] RP 1-3535 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (09-FEB-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; b8321bf57fdf8130a0a275e389c6ca38. DR ENA; LTQK01000000; SET. DR ENA; LTQK00000000; SET. DR BioSample; SAMN04498585. XX CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 03/03/2016 04:16:58 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 2,410 CC CDS (total) :: 2,382 CC Genes (coding) :: 2,324 CC CDS (coding) :: 2,324 CC Genes (RNA) :: 28 CC rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC tRNAs :: 21 CC ncRNAs :: 4 CC Pseudo Genes (total) :: 58 CC Pseudo Genes (ambiguous residues) :: 0 of 58 CC Pseudo Genes (frameshifted) :: 8 of 58 CC Pseudo Genes (incomplete) :: 44 of 58 CC Pseudo Genes (internal stop) :: 6 of 58 CC Genome Coverage :: 156x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 156x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..3535 FT /organism="Staphylococcus sp. HMSC061C10" FT /host="Homo sapiens" FT /strain="HMSC061C10" FT /mol_type="genomic DNA" FT /isolation_source="vaginal/rectal" FT /db_xref="taxon:1715056" XX CO join(LTQK01000093.1:1..3535) // ID KV830250; SV 1; linear; genomic DNA; CON; PRO; 3057 BP. XX AC KV830250; LTQK01000000; XX PR Project:PRJNA296184; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Staphylococcus sp. HMSC061C10 genomic scaffold Scaffold8, whole genome DE shotgun sequence. XX KW . XX OS Staphylococcus sp. HMSC061C10 OC Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcaceae; OC Staphylococcus. XX RN [1] RP 1-3057 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (09-FEB-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; bdaf4775b1783a3411ba52ca7dcbe8f5. DR ENA; LTQK01000000; SET. DR ENA; LTQK00000000; SET. DR BioSample; SAMN04498585. XX CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 03/03/2016 04:16:58 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 2,410 CC CDS (total) :: 2,382 CC Genes (coding) :: 2,324 CC CDS (coding) :: 2,324 CC Genes (RNA) :: 28 CC rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC tRNAs :: 21 CC ncRNAs :: 4 CC Pseudo Genes (total) :: 58 CC Pseudo Genes (ambiguous residues) :: 0 of 58 CC Pseudo Genes (frameshifted) :: 8 of 58 CC Pseudo Genes (incomplete) :: 44 of 58 CC Pseudo Genes (internal stop) :: 6 of 58 CC Genome Coverage :: 156x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 156x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..3057 FT /organism="Staphylococcus sp. HMSC061C10" FT /host="Homo sapiens" FT /strain="HMSC061C10" FT /mol_type="genomic DNA" FT /isolation_source="vaginal/rectal" FT /db_xref="taxon:1715056" XX CO join(LTQK01000108.1:1..3057) // ID KV830251; SV 1; linear; genomic DNA; CON; PRO; 203 BP. XX AC KV830251; LTQK01000000; XX PR Project:PRJNA296184; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Staphylococcus sp. HMSC061C10 genomic scaffold Scaffold11, whole genome DE shotgun sequence. XX KW . XX OS Staphylococcus sp. HMSC061C10 OC Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcaceae; OC Staphylococcus. XX RN [1] RP 1-203 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (09-FEB-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; 317f3f105cd0aad0ecbf6c7391a66841. DR ENA; LTQK01000000; SET. DR ENA; LTQK00000000; SET. DR BioSample; SAMN04498585. XX CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 03/03/2016 04:16:58 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 2,410 CC CDS (total) :: 2,382 CC Genes (coding) :: 2,324 CC CDS (coding) :: 2,324 CC Genes (RNA) :: 28 CC rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC tRNAs :: 21 CC ncRNAs :: 4 CC Pseudo Genes (total) :: 58 CC Pseudo Genes (ambiguous residues) :: 0 of 58 CC Pseudo Genes (frameshifted) :: 8 of 58 CC Pseudo Genes (incomplete) :: 44 of 58 CC Pseudo Genes (internal stop) :: 6 of 58 CC Genome Coverage :: 156x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 156x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..203 FT /organism="Staphylococcus sp. HMSC061C10" FT /host="Homo sapiens" FT /strain="HMSC061C10" FT /mol_type="genomic DNA" FT /isolation_source="vaginal/rectal" FT /db_xref="taxon:1715056" XX CO join(LTQK01000004.1:1..203) // ID KV830252; SV 1; linear; genomic DNA; CON; PRO; 724 BP. XX AC KV830252; LTQK01000000; XX PR Project:PRJNA296184; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Staphylococcus sp. HMSC061C10 genomic scaffold Scaffold13, whole genome DE shotgun sequence. XX KW . XX OS Staphylococcus sp. HMSC061C10 OC Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcaceae; OC Staphylococcus. XX RN [1] RP 1-724 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (09-FEB-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; e4991eb8ad8a03d360c8f80a75e96c65. DR ENA; LTQK01000000; SET. DR ENA; LTQK00000000; SET. DR BioSample; SAMN04498585. XX CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 03/03/2016 04:16:58 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 2,410 CC CDS (total) :: 2,382 CC Genes (coding) :: 2,324 CC CDS (coding) :: 2,324 CC Genes (RNA) :: 28 CC rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC tRNAs :: 21 CC ncRNAs :: 4 CC Pseudo Genes (total) :: 58 CC Pseudo Genes (ambiguous residues) :: 0 of 58 CC Pseudo Genes (frameshifted) :: 8 of 58 CC Pseudo Genes (incomplete) :: 44 of 58 CC Pseudo Genes (internal stop) :: 6 of 58 CC Genome Coverage :: 156x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 156x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..724 FT /organism="Staphylococcus sp. HMSC061C10" FT /host="Homo sapiens" FT /strain="HMSC061C10" FT /mol_type="genomic DNA" FT /isolation_source="vaginal/rectal" FT /db_xref="taxon:1715056" XX CO join(LTQK01000005.1:1..724) // ID KV830253; SV 1; linear; genomic DNA; CON; PRO; 171817 BP. XX AC KV830253; LTQK01000000; XX PR Project:PRJNA296184; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Staphylococcus sp. HMSC061C10 genomic scaffold Scaffold19, whole genome DE shotgun sequence. XX KW . XX OS Staphylococcus sp. HMSC061C10 OC Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcaceae; OC Staphylococcus. XX RN [1] RP 1-171817 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (09-FEB-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; 3eca9a455641a3b49251f9a190b6d670. DR ENA; LTQK01000000; SET. DR ENA; LTQK00000000; SET. DR BioSample; SAMN04498585. XX CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 03/03/2016 04:16:58 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 2,410 CC CDS (total) :: 2,382 CC Genes (coding) :: 2,324 CC CDS (coding) :: 2,324 CC Genes (RNA) :: 28 CC rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC tRNAs :: 21 CC ncRNAs :: 4 CC Pseudo Genes (total) :: 58 CC Pseudo Genes (ambiguous residues) :: 0 of 58 CC Pseudo Genes (frameshifted) :: 8 of 58 CC Pseudo Genes (incomplete) :: 44 of 58 CC Pseudo Genes (internal stop) :: 6 of 58 CC Genome Coverage :: 156x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 156x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..171817 FT /organism="Staphylococcus sp. HMSC061C10" FT /host="Homo sapiens" FT /strain="HMSC061C10" FT /mol_type="genomic DNA" FT /isolation_source="vaginal/rectal" FT /db_xref="taxon:1715056" FT assembly_gap 21671..21770 FT /estimated_length=unknown FT /gap_type="within scaffold" FT /linkage_evidence="paired-ends" FT assembly_gap 68731..68830 FT /estimated_length=unknown FT /gap_type="within scaffold" FT /linkage_evidence="paired-ends" FT assembly_gap 98915..99014 FT /estimated_length=unknown FT /gap_type="within scaffold" FT /linkage_evidence="paired-ends" FT assembly_gap 132415..132514 FT /estimated_length=unknown FT /gap_type="within scaffold" FT /linkage_evidence="paired-ends" XX CO join(LTQK01000013.1:1..21670,gap(unk100),LTQK01000014.1:1..46960, CO gap(unk100),LTQK01000015.1:1..30084,gap(unk100),LTQK01000016.1:1..33400, CO gap(unk100),LTQK01000017.1:1..39303) // ID KV830254; SV 1; linear; genomic DNA; CON; PRO; 44279 BP. XX AC KV830254; LTQK01000000; XX PR Project:PRJNA296184; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Staphylococcus sp. HMSC061C10 genomic scaffold Scaffold28, whole genome DE shotgun sequence. XX KW . XX OS Staphylococcus sp. HMSC061C10 OC Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcaceae; OC Staphylococcus. XX RN [1] RP 1-44279 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (09-FEB-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; 6e32c097d8387b34ea1ff3c459c95693. DR ENA; LTQK01000000; SET. DR ENA; LTQK00000000; SET. DR BioSample; SAMN04498585. XX CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 03/03/2016 04:16:58 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 2,410 CC CDS (total) :: 2,382 CC Genes (coding) :: 2,324 CC CDS (coding) :: 2,324 CC Genes (RNA) :: 28 CC rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC tRNAs :: 21 CC ncRNAs :: 4 CC Pseudo Genes (total) :: 58 CC Pseudo Genes (ambiguous residues) :: 0 of 58 CC Pseudo Genes (frameshifted) :: 8 of 58 CC Pseudo Genes (incomplete) :: 44 of 58 CC Pseudo Genes (internal stop) :: 6 of 58 CC Genome Coverage :: 156x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 156x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..44279 FT /organism="Staphylococcus sp. HMSC061C10" FT /host="Homo sapiens" FT /strain="HMSC061C10" FT /mol_type="genomic DNA" FT /isolation_source="vaginal/rectal" FT /db_xref="taxon:1715056" XX CO join(LTQK01000044.1:1..44279) // ID KV830255; SV 1; linear; genomic DNA; CON; PRO; 73376 BP. XX AC KV830255; LTQK01000000; XX PR Project:PRJNA296184; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Staphylococcus sp. HMSC061C10 genomic scaffold Scaffold29, whole genome DE shotgun sequence. XX KW . XX OS Staphylococcus sp. HMSC061C10 OC Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcaceae; OC Staphylococcus. XX RN [1] RP 1-73376 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (09-FEB-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; 5c1aad42dff6bfeadd557755924d4f11. DR ENA; LTQK01000000; SET. DR ENA; LTQK00000000; SET. DR BioSample; SAMN04498585. XX CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 03/03/2016 04:16:58 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 2,410 CC CDS (total) :: 2,382 CC Genes (coding) :: 2,324 CC CDS (coding) :: 2,324 CC Genes (RNA) :: 28 CC rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC tRNAs :: 21 CC ncRNAs :: 4 CC Pseudo Genes (total) :: 58 CC Pseudo Genes (ambiguous residues) :: 0 of 58 CC Pseudo Genes (frameshifted) :: 8 of 58 CC Pseudo Genes (incomplete) :: 44 of 58 CC Pseudo Genes (internal stop) :: 6 of 58 CC Genome Coverage :: 156x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 156x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..73376 FT /organism="Staphylococcus sp. HMSC061C10" FT /host="Homo sapiens" FT /strain="HMSC061C10" FT /mol_type="genomic DNA" FT /isolation_source="vaginal/rectal" FT /db_xref="taxon:1715056" FT assembly_gap 738..837 FT /estimated_length=unknown FT /gap_type="within scaffold" FT /linkage_evidence="paired-ends" FT assembly_gap 1308..1407 FT /estimated_length=unknown FT /gap_type="within scaffold" FT /linkage_evidence="paired-ends" FT assembly_gap 1686..1785 FT /estimated_length=unknown FT /gap_type="within scaffold" FT /linkage_evidence="paired-ends" FT assembly_gap 30920..31019 FT /estimated_length=unknown FT /gap_type="within scaffold" FT /linkage_evidence="paired-ends" XX CO join(LTQK01000045.1:1..737,gap(unk100),LTQK01000046.1:1..470,gap(unk100), CO LTQK01000047.1:1..278,gap(unk100),LTQK01000048.1:1..29134,gap(unk100), CO LTQK01000049.1:1..42357) // ID KV830256; SV 1; linear; genomic DNA; CON; PRO; 235 BP. XX AC KV830256; LTQK01000000; XX PR Project:PRJNA296184; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Staphylococcus sp. HMSC061C10 genomic scaffold Scaffold31, whole genome DE shotgun sequence. XX KW . XX OS Staphylococcus sp. HMSC061C10 OC Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcaceae; OC Staphylococcus. XX RN [1] RP 1-235 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (09-FEB-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; cbace6a7424af7c0b3dee06bf24116fa. DR ENA; LTQK01000000; SET. DR ENA; LTQK00000000; SET. DR BioSample; SAMN04498585. XX CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 03/03/2016 04:16:58 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 2,410 CC CDS (total) :: 2,382 CC Genes (coding) :: 2,324 CC CDS (coding) :: 2,324 CC Genes (RNA) :: 28 CC rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC tRNAs :: 21 CC ncRNAs :: 4 CC Pseudo Genes (total) :: 58 CC Pseudo Genes (ambiguous residues) :: 0 of 58 CC Pseudo Genes (frameshifted) :: 8 of 58 CC Pseudo Genes (incomplete) :: 44 of 58 CC Pseudo Genes (internal stop) :: 6 of 58 CC Genome Coverage :: 156x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 156x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..235 FT /organism="Staphylococcus sp. HMSC061C10" FT /host="Homo sapiens" FT /strain="HMSC061C10" FT /mol_type="genomic DNA" FT /isolation_source="vaginal/rectal" FT /db_xref="taxon:1715056" XX CO join(LTQK01000051.1:1..235) // ID KV830257; SV 1; linear; genomic DNA; CON; PRO; 279 BP. XX AC KV830257; LTQK01000000; XX PR Project:PRJNA296184; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Staphylococcus sp. HMSC061C10 genomic scaffold Scaffold35, whole genome DE shotgun sequence. XX KW . XX OS Staphylococcus sp. HMSC061C10 OC Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcaceae; OC Staphylococcus. XX RN [1] RP 1-279 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (09-FEB-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; c7c26026dd1b0d380e63cb834b140735. DR ENA; LTQK01000000; SET. DR ENA; LTQK00000000; SET. DR BioSample; SAMN04498585. XX CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 03/03/2016 04:16:58 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 2,410 CC CDS (total) :: 2,382 CC Genes (coding) :: 2,324 CC CDS (coding) :: 2,324 CC Genes (RNA) :: 28 CC rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC tRNAs :: 21 CC ncRNAs :: 4 CC Pseudo Genes (total) :: 58 CC Pseudo Genes (ambiguous residues) :: 0 of 58 CC Pseudo Genes (frameshifted) :: 8 of 58 CC Pseudo Genes (incomplete) :: 44 of 58 CC Pseudo Genes (internal stop) :: 6 of 58 CC Genome Coverage :: 156x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 156x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..279 FT /organism="Staphylococcus sp. HMSC061C10" FT /host="Homo sapiens" FT /strain="HMSC061C10" FT /mol_type="genomic DNA" FT /isolation_source="vaginal/rectal" FT /db_xref="taxon:1715056" XX CO join(LTQK01000052.1:1..279) // ID KV830258; SV 1; linear; genomic DNA; CON; PRO; 28367 BP. XX AC KV830258; LTQK01000000; XX PR Project:PRJNA296184; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Staphylococcus sp. HMSC061C10 genomic scaffold Scaffold39, whole genome DE shotgun sequence. XX KW . XX OS Staphylococcus sp. HMSC061C10 OC Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcaceae; OC Staphylococcus. XX RN [1] RP 1-28367 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (09-FEB-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; c111a54f8c15866e445f3a84de331ed1. DR ENA; LTQK01000000; SET. DR ENA; LTQK00000000; SET. DR BioSample; SAMN04498585. XX CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 03/03/2016 04:16:58 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 2,410 CC CDS (total) :: 2,382 CC Genes (coding) :: 2,324 CC CDS (coding) :: 2,324 CC Genes (RNA) :: 28 CC rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC tRNAs :: 21 CC ncRNAs :: 4 CC Pseudo Genes (total) :: 58 CC Pseudo Genes (ambiguous residues) :: 0 of 58 CC Pseudo Genes (frameshifted) :: 8 of 58 CC Pseudo Genes (incomplete) :: 44 of 58 CC Pseudo Genes (internal stop) :: 6 of 58 CC Genome Coverage :: 156x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 156x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..28367 FT /organism="Staphylococcus sp. HMSC061C10" FT /host="Homo sapiens" FT /strain="HMSC061C10" FT /mol_type="genomic DNA" FT /isolation_source="vaginal/rectal" FT /db_xref="taxon:1715056" XX CO join(LTQK01000053.1:1..28367) // ID KV830259; SV 1; linear; genomic DNA; CON; PRO; 290 BP. XX AC KV830259; LTQK01000000; XX PR Project:PRJNA296184; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Staphylococcus sp. HMSC061C10 genomic scaffold Scaffold41, whole genome DE shotgun sequence. XX KW . XX OS Staphylococcus sp. HMSC061C10 OC Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcaceae; OC Staphylococcus. XX RN [1] RP 1-290 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (09-FEB-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; 01b0312d163d32fba25bfabd86f5d274. DR ENA; LTQK01000000; SET. DR ENA; LTQK00000000; SET. DR BioSample; SAMN04498585. XX CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 03/03/2016 04:16:58 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 2,410 CC CDS (total) :: 2,382 CC Genes (coding) :: 2,324 CC CDS (coding) :: 2,324 CC Genes (RNA) :: 28 CC rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC tRNAs :: 21 CC ncRNAs :: 4 CC Pseudo Genes (total) :: 58 CC Pseudo Genes (ambiguous residues) :: 0 of 58 CC Pseudo Genes (frameshifted) :: 8 of 58 CC Pseudo Genes (incomplete) :: 44 of 58 CC Pseudo Genes (internal stop) :: 6 of 58 CC Genome Coverage :: 156x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 156x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..290 FT /organism="Staphylococcus sp. HMSC061C10" FT /host="Homo sapiens" FT /strain="HMSC061C10" FT /mol_type="genomic DNA" FT /isolation_source="vaginal/rectal" FT /db_xref="taxon:1715056" XX CO join(LTQK01000056.1:1..290) // ID KV830260; SV 1; linear; genomic DNA; CON; PRO; 574 BP. XX AC KV830260; LTQK01000000; XX PR Project:PRJNA296184; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Staphylococcus sp. HMSC061C10 genomic scaffold Scaffold42, whole genome DE shotgun sequence. XX KW . XX OS Staphylococcus sp. HMSC061C10 OC Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcaceae; OC Staphylococcus. XX RN [1] RP 1-574 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (09-FEB-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; 6f646dbf65feed03122d6d23289eddc9. DR ENA; LTQK01000000; SET. DR ENA; LTQK00000000; SET. DR BioSample; SAMN04498585. XX CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 03/03/2016 04:16:58 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 2,410 CC CDS (total) :: 2,382 CC Genes (coding) :: 2,324 CC CDS (coding) :: 2,324 CC Genes (RNA) :: 28 CC rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC tRNAs :: 21 CC ncRNAs :: 4 CC Pseudo Genes (total) :: 58 CC Pseudo Genes (ambiguous residues) :: 0 of 58 CC Pseudo Genes (frameshifted) :: 8 of 58 CC Pseudo Genes (incomplete) :: 44 of 58 CC Pseudo Genes (internal stop) :: 6 of 58 CC Genome Coverage :: 156x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 156x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..574 FT /organism="Staphylococcus sp. HMSC061C10" FT /host="Homo sapiens" FT /strain="HMSC061C10" FT /mol_type="genomic DNA" FT /isolation_source="vaginal/rectal" FT /db_xref="taxon:1715056" XX CO join(LTQK01000057.1:1..574) // ID KV830261; SV 1; linear; genomic DNA; CON; PRO; 168103 BP. XX AC KV830261; LTQK01000000; XX PR Project:PRJNA296184; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Staphylococcus sp. HMSC061C10 genomic scaffold Scaffold43, whole genome DE shotgun sequence. XX KW . XX OS Staphylococcus sp. HMSC061C10 OC Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcaceae; OC Staphylococcus. XX RN [1] RP 1-168103 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (09-FEB-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; 306e9da0db8393395c020db4f1282947. DR ENA; LTQK01000000; SET. DR ENA; LTQK00000000; SET. DR BioSample; SAMN04498585. XX CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 03/03/2016 04:16:58 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 2,410 CC CDS (total) :: 2,382 CC Genes (coding) :: 2,324 CC CDS (coding) :: 2,324 CC Genes (RNA) :: 28 CC rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC tRNAs :: 21 CC ncRNAs :: 4 CC Pseudo Genes (total) :: 58 CC Pseudo Genes (ambiguous residues) :: 0 of 58 CC Pseudo Genes (frameshifted) :: 8 of 58 CC Pseudo Genes (incomplete) :: 44 of 58 CC Pseudo Genes (internal stop) :: 6 of 58 CC Genome Coverage :: 156x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 156x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..168103 FT /organism="Staphylococcus sp. HMSC061C10" FT /host="Homo sapiens" FT /strain="HMSC061C10" FT /mol_type="genomic DNA" FT /isolation_source="vaginal/rectal" FT /db_xref="taxon:1715056" FT assembly_gap 17915..18014 FT /estimated_length=unknown FT /gap_type="within scaffold" FT /linkage_evidence="paired-ends" FT assembly_gap 72017..72116 FT /estimated_length=unknown FT /gap_type="within scaffold" FT /linkage_evidence="paired-ends" XX CO join(LTQK01000058.1:1..17914,gap(unk100),LTQK01000059.1:1..54002, CO gap(unk100),LTQK01000060.1:1..95987) // ID KV830262; SV 1; linear; genomic DNA; CON; PRO; 32602 BP. XX AC KV830262; LTQK01000000; XX PR Project:PRJNA296184; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Staphylococcus sp. HMSC061C10 genomic scaffold Scaffold44, whole genome DE shotgun sequence. XX KW . XX OS Staphylococcus sp. HMSC061C10 OC Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcaceae; OC Staphylococcus. XX RN [1] RP 1-32602 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (09-FEB-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; f330b4615e5a51028bbcbf860eb2ddd4. DR ENA; LTQK01000000; SET. DR ENA; LTQK00000000; SET. DR BioSample; SAMN04498585. XX CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 03/03/2016 04:16:58 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 2,410 CC CDS (total) :: 2,382 CC Genes (coding) :: 2,324 CC CDS (coding) :: 2,324 CC Genes (RNA) :: 28 CC rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC tRNAs :: 21 CC ncRNAs :: 4 CC Pseudo Genes (total) :: 58 CC Pseudo Genes (ambiguous residues) :: 0 of 58 CC Pseudo Genes (frameshifted) :: 8 of 58 CC Pseudo Genes (incomplete) :: 44 of 58 CC Pseudo Genes (internal stop) :: 6 of 58 CC Genome Coverage :: 156x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 156x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..32602 FT /organism="Staphylococcus sp. HMSC061C10" FT /host="Homo sapiens" FT /strain="HMSC061C10" FT /mol_type="genomic DNA" FT /isolation_source="vaginal/rectal" FT /db_xref="taxon:1715056" XX CO join(LTQK01000062.1:1..32602) // ID KV830263; SV 1; linear; genomic DNA; CON; PRO; 1175 BP. XX AC KV830263; LTQK01000000; XX PR Project:PRJNA296184; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Staphylococcus sp. HMSC061C10 genomic scaffold Scaffold47, whole genome DE shotgun sequence. XX KW . XX OS Staphylococcus sp. HMSC061C10 OC Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcaceae; OC Staphylococcus. XX RN [1] RP 1-1175 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (09-FEB-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; 866c37c768fe687dbbf9518495089717. DR ENA; LTQK01000000; SET. DR ENA; LTQK00000000; SET. DR BioSample; SAMN04498585. XX CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 03/03/2016 04:16:58 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 2,410 CC CDS (total) :: 2,382 CC Genes (coding) :: 2,324 CC CDS (coding) :: 2,324 CC Genes (RNA) :: 28 CC rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC tRNAs :: 21 CC ncRNAs :: 4 CC Pseudo Genes (total) :: 58 CC Pseudo Genes (ambiguous residues) :: 0 of 58 CC Pseudo Genes (frameshifted) :: 8 of 58 CC Pseudo Genes (incomplete) :: 44 of 58 CC Pseudo Genes (internal stop) :: 6 of 58 CC Genome Coverage :: 156x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 156x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..1175 FT /organism="Staphylococcus sp. HMSC061C10" FT /host="Homo sapiens" FT /strain="HMSC061C10" FT /mol_type="genomic DNA" FT /isolation_source="vaginal/rectal" FT /db_xref="taxon:1715056" XX CO join(LTQK01000063.1:1..1175) // ID KV830264; SV 1; linear; genomic DNA; CON; PRO; 97832 BP. XX AC KV830264; LTQK01000000; XX PR Project:PRJNA296184; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Staphylococcus sp. HMSC061C10 genomic scaffold Scaffold53, whole genome DE shotgun sequence. XX KW . XX OS Staphylococcus sp. HMSC061C10 OC Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcaceae; OC Staphylococcus. XX RN [1] RP 1-97832 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (09-FEB-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; d8b0239313662f892f943d4b2736d233. DR ENA; LTQK01000000; SET. DR ENA; LTQK00000000; SET. DR BioSample; SAMN04498585. XX CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 03/03/2016 04:16:58 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 2,410 CC CDS (total) :: 2,382 CC Genes (coding) :: 2,324 CC CDS (coding) :: 2,324 CC Genes (RNA) :: 28 CC rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC tRNAs :: 21 CC ncRNAs :: 4 CC Pseudo Genes (total) :: 58 CC Pseudo Genes (ambiguous residues) :: 0 of 58 CC Pseudo Genes (frameshifted) :: 8 of 58 CC Pseudo Genes (incomplete) :: 44 of 58 CC Pseudo Genes (internal stop) :: 6 of 58 CC Genome Coverage :: 156x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 156x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..97832 FT /organism="Staphylococcus sp. HMSC061C10" FT /host="Homo sapiens" FT /strain="HMSC061C10" FT /mol_type="genomic DNA" FT /isolation_source="vaginal/rectal" FT /db_xref="taxon:1715056" FT assembly_gap 32198..32297 FT /estimated_length=unknown FT /gap_type="within scaffold" FT /linkage_evidence="paired-ends" FT assembly_gap 83258..83357 FT /estimated_length=unknown FT /gap_type="within scaffold" FT /linkage_evidence="paired-ends" XX CO join(LTQK01000083.1:1..32197,gap(unk100),LTQK01000084.1:1..50960, CO gap(unk100),LTQK01000085.1:1..14475) // ID KV830265; SV 1; linear; genomic DNA; CON; PRO; 81636 BP. XX AC KV830265; LTQK01000000; XX PR Project:PRJNA296184; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Staphylococcus sp. HMSC061C10 genomic scaffold Scaffold58, whole genome DE shotgun sequence. XX KW . XX OS Staphylococcus sp. HMSC061C10 OC Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcaceae; OC Staphylococcus. XX RN [1] RP 1-81636 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (09-FEB-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; b48b9f99ef558e9e7e37eae3cf9cee24. DR ENA; LTQK01000000; SET. DR ENA; LTQK00000000; SET. DR BioSample; SAMN04498585. XX CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 03/03/2016 04:16:58 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 2,410 CC CDS (total) :: 2,382 CC Genes (coding) :: 2,324 CC CDS (coding) :: 2,324 CC Genes (RNA) :: 28 CC rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC tRNAs :: 21 CC ncRNAs :: 4 CC Pseudo Genes (total) :: 58 CC Pseudo Genes (ambiguous residues) :: 0 of 58 CC Pseudo Genes (frameshifted) :: 8 of 58 CC Pseudo Genes (incomplete) :: 44 of 58 CC Pseudo Genes (internal stop) :: 6 of 58 CC Genome Coverage :: 156x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 156x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..81636 FT /organism="Staphylococcus sp. HMSC061C10" FT /host="Homo sapiens" FT /strain="HMSC061C10" FT /mol_type="genomic DNA" FT /isolation_source="vaginal/rectal" FT /db_xref="taxon:1715056" FT assembly_gap 28714..28813 FT /estimated_length=unknown FT /gap_type="within scaffold" FT /linkage_evidence="paired-ends" FT assembly_gap 58491..58590 FT /estimated_length=unknown FT /gap_type="within scaffold" FT /linkage_evidence="paired-ends" XX CO join(LTQK01000088.1:1..28713,gap(unk100),LTQK01000089.1:1..29677, CO gap(unk100),LTQK01000090.1:1..23046) // ID KV830266; SV 1; linear; genomic DNA; CON; PRO; 16504 BP. XX AC KV830266; LTQK01000000; XX PR Project:PRJNA296184; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Staphylococcus sp. HMSC061C10 genomic scaffold Scaffold60, whole genome DE shotgun sequence. XX KW . XX OS Staphylococcus sp. HMSC061C10 OC Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcaceae; OC Staphylococcus. XX RN [1] RP 1-16504 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (09-FEB-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; 9bde8dd711994ef48c3486fe60234619. DR ENA; LTQK01000000; SET. DR ENA; LTQK00000000; SET. DR BioSample; SAMN04498585. XX CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 03/03/2016 04:16:58 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 2,410 CC CDS (total) :: 2,382 CC Genes (coding) :: 2,324 CC CDS (coding) :: 2,324 CC Genes (RNA) :: 28 CC rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC tRNAs :: 21 CC ncRNAs :: 4 CC Pseudo Genes (total) :: 58 CC Pseudo Genes (ambiguous residues) :: 0 of 58 CC Pseudo Genes (frameshifted) :: 8 of 58 CC Pseudo Genes (incomplete) :: 44 of 58 CC Pseudo Genes (internal stop) :: 6 of 58 CC Genome Coverage :: 156x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 156x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..16504 FT /organism="Staphylococcus sp. HMSC061C10" FT /host="Homo sapiens" FT /strain="HMSC061C10" FT /mol_type="genomic DNA" FT /isolation_source="vaginal/rectal" FT /db_xref="taxon:1715056" XX CO join(LTQK01000094.1:1..16504) // ID KV830267; SV 1; linear; genomic DNA; CON; PRO; 2374 BP. XX AC KV830267; LTQK01000000; XX PR Project:PRJNA296184; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Staphylococcus sp. HMSC061C10 genomic scaffold Scaffold61, whole genome DE shotgun sequence. XX KW . XX OS Staphylococcus sp. HMSC061C10 OC Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcaceae; OC Staphylococcus. XX RN [1] RP 1-2374 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (09-FEB-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; 5c7aab61fab5930958f529f2fa5d0656. DR ENA; LTQK01000000; SET. DR ENA; LTQK00000000; SET. DR BioSample; SAMN04498585. XX CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 03/03/2016 04:16:58 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 2,410 CC CDS (total) :: 2,382 CC Genes (coding) :: 2,324 CC CDS (coding) :: 2,324 CC Genes (RNA) :: 28 CC rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC tRNAs :: 21 CC ncRNAs :: 4 CC Pseudo Genes (total) :: 58 CC Pseudo Genes (ambiguous residues) :: 0 of 58 CC Pseudo Genes (frameshifted) :: 8 of 58 CC Pseudo Genes (incomplete) :: 44 of 58 CC Pseudo Genes (internal stop) :: 6 of 58 CC Genome Coverage :: 156x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 156x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..2374 FT /organism="Staphylococcus sp. HMSC061C10" FT /host="Homo sapiens" FT /strain="HMSC061C10" FT /mol_type="genomic DNA" FT /isolation_source="vaginal/rectal" FT /db_xref="taxon:1715056" XX CO join(LTQK01000095.1:1..2374) // ID KV830268; SV 1; linear; genomic DNA; CON; PRO; 936 BP. XX AC KV830268; LTQK01000000; XX PR Project:PRJNA296184; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Staphylococcus sp. HMSC061C10 genomic scaffold Scaffold62, whole genome DE shotgun sequence. XX KW . XX OS Staphylococcus sp. HMSC061C10 OC Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcaceae; OC Staphylococcus. XX RN [1] RP 1-936 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (09-FEB-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; e2cb81b8a4dbcc4885329d05496dfd58. DR ENA; LTQK01000000; SET. DR ENA; LTQK00000000; SET. DR BioSample; SAMN04498585. XX CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 03/03/2016 04:16:58 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 2,410 CC CDS (total) :: 2,382 CC Genes (coding) :: 2,324 CC CDS (coding) :: 2,324 CC Genes (RNA) :: 28 CC rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC tRNAs :: 21 CC ncRNAs :: 4 CC Pseudo Genes (total) :: 58 CC Pseudo Genes (ambiguous residues) :: 0 of 58 CC Pseudo Genes (frameshifted) :: 8 of 58 CC Pseudo Genes (incomplete) :: 44 of 58 CC Pseudo Genes (internal stop) :: 6 of 58 CC Genome Coverage :: 156x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 156x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..936 FT /organism="Staphylococcus sp. HMSC061C10" FT /host="Homo sapiens" FT /strain="HMSC061C10" FT /mol_type="genomic DNA" FT /isolation_source="vaginal/rectal" FT /db_xref="taxon:1715056" XX CO join(LTQK01000096.1:1..936) // ID KV830269; SV 1; linear; genomic DNA; CON; PRO; 21564 BP. XX AC KV830269; LTQK01000000; XX PR Project:PRJNA296184; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Staphylococcus sp. HMSC061C10 genomic scaffold Scaffold65, whole genome DE shotgun sequence. XX KW . XX OS Staphylococcus sp. HMSC061C10 OC Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcaceae; OC Staphylococcus. XX RN [1] RP 1-21564 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (09-FEB-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; bb0e4ef1576dca8b35bb9236a5e514ac. DR ENA; LTQK01000000; SET. DR ENA; LTQK00000000; SET. DR BioSample; SAMN04498585. XX CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 03/03/2016 04:16:58 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 2,410 CC CDS (total) :: 2,382 CC Genes (coding) :: 2,324 CC CDS (coding) :: 2,324 CC Genes (RNA) :: 28 CC rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC tRNAs :: 21 CC ncRNAs :: 4 CC Pseudo Genes (total) :: 58 CC Pseudo Genes (ambiguous residues) :: 0 of 58 CC Pseudo Genes (frameshifted) :: 8 of 58 CC Pseudo Genes (incomplete) :: 44 of 58 CC Pseudo Genes (internal stop) :: 6 of 58 CC Genome Coverage :: 156x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 156x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..21564 FT /organism="Staphylococcus sp. HMSC061C10" FT /host="Homo sapiens" FT /strain="HMSC061C10" FT /mol_type="genomic DNA" FT /isolation_source="vaginal/rectal" FT /db_xref="taxon:1715056" FT assembly_gap 19960..20059 FT /estimated_length=unknown FT /gap_type="within scaffold" FT /linkage_evidence="paired-ends" XX CO join(LTQK01000098.1:1..19959,gap(unk100),LTQK01000099.1:1..1505) // ID KV830270; SV 1; linear; genomic DNA; CON; PRO; 252581 BP. XX AC KV830270; LTQK01000000; XX PR Project:PRJNA296184; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Staphylococcus sp. HMSC061C10 genomic scaffold Scaffold67, whole genome DE shotgun sequence. XX KW . XX OS Staphylococcus sp. HMSC061C10 OC Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcaceae; OC Staphylococcus. XX RN [1] RP 1-252581 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (09-FEB-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; 2b1bc163b30350811a61bcaa37df1ee6. DR ENA; LTQK01000000; SET. DR ENA; LTQK00000000; SET. DR BioSample; SAMN04498585. XX CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 03/03/2016 04:16:58 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 2,410 CC CDS (total) :: 2,382 CC Genes (coding) :: 2,324 CC CDS (coding) :: 2,324 CC Genes (RNA) :: 28 CC rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC tRNAs :: 21 CC ncRNAs :: 4 CC Pseudo Genes (total) :: 58 CC Pseudo Genes (ambiguous residues) :: 0 of 58 CC Pseudo Genes (frameshifted) :: 8 of 58 CC Pseudo Genes (incomplete) :: 44 of 58 CC Pseudo Genes (internal stop) :: 6 of 58 CC Genome Coverage :: 156x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 156x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..252581 FT /organism="Staphylococcus sp. HMSC061C10" FT /host="Homo sapiens" FT /strain="HMSC061C10" FT /mol_type="genomic DNA" FT /isolation_source="vaginal/rectal" FT /db_xref="taxon:1715056" FT assembly_gap 98799..98898 FT /estimated_length=unknown FT /gap_type="within scaffold" FT /linkage_evidence="paired-ends" XX CO join(LTQK01000100.1:1..98798,gap(unk100),LTQK01000101.1:1..153683) // ID KV830271; SV 1; linear; genomic DNA; CON; PRO; 34482 BP. XX AC KV830271; LTQK01000000; XX PR Project:PRJNA296184; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Staphylococcus sp. HMSC061C10 genomic scaffold Scaffold68, whole genome DE shotgun sequence. XX KW . XX OS Staphylococcus sp. HMSC061C10 OC Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcaceae; OC Staphylococcus. XX RN [1] RP 1-34482 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (09-FEB-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; 1f8e4eb58d7ef1d33b782ee36cf1baec. DR ENA; LTQK01000000; SET. DR ENA; LTQK00000000; SET. DR BioSample; SAMN04498585. XX CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 03/03/2016 04:16:58 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 2,410 CC CDS (total) :: 2,382 CC Genes (coding) :: 2,324 CC CDS (coding) :: 2,324 CC Genes (RNA) :: 28 CC rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC tRNAs :: 21 CC ncRNAs :: 4 CC Pseudo Genes (total) :: 58 CC Pseudo Genes (ambiguous residues) :: 0 of 58 CC Pseudo Genes (frameshifted) :: 8 of 58 CC Pseudo Genes (incomplete) :: 44 of 58 CC Pseudo Genes (internal stop) :: 6 of 58 CC Genome Coverage :: 156x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 156x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..34482 FT /organism="Staphylococcus sp. HMSC061C10" FT /host="Homo sapiens" FT /strain="HMSC061C10" FT /mol_type="genomic DNA" FT /isolation_source="vaginal/rectal" FT /db_xref="taxon:1715056" FT assembly_gap 12473..12572 FT /estimated_length=unknown FT /gap_type="within scaffold" FT /linkage_evidence="paired-ends" FT assembly_gap 20220..20319 FT /estimated_length=unknown FT /gap_type="within scaffold" FT /linkage_evidence="paired-ends" XX CO join(LTQK01000102.1:1..12472,gap(unk100),LTQK01000103.1:1..7647, CO gap(unk100),LTQK01000104.1:1..14163) // ID KV830272; SV 1; linear; genomic DNA; CON; PRO; 7146 BP. XX AC KV830272; LTQK01000000; XX PR Project:PRJNA296184; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Staphylococcus sp. HMSC061C10 genomic scaffold Scaffold70, whole genome DE shotgun sequence. XX KW . XX OS Staphylococcus sp. HMSC061C10 OC Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcaceae; OC Staphylococcus. XX RN [1] RP 1-7146 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (09-FEB-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; 55dd6e2bf84abda36539fd0e749eba4d. DR ENA; LTQK01000000; SET. DR ENA; LTQK00000000; SET. DR BioSample; SAMN04498585. XX CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 03/03/2016 04:16:58 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 2,410 CC CDS (total) :: 2,382 CC Genes (coding) :: 2,324 CC CDS (coding) :: 2,324 CC Genes (RNA) :: 28 CC rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC tRNAs :: 21 CC ncRNAs :: 4 CC Pseudo Genes (total) :: 58 CC Pseudo Genes (ambiguous residues) :: 0 of 58 CC Pseudo Genes (frameshifted) :: 8 of 58 CC Pseudo Genes (incomplete) :: 44 of 58 CC Pseudo Genes (internal stop) :: 6 of 58 CC Genome Coverage :: 156x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 156x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..7146 FT /organism="Staphylococcus sp. HMSC061C10" FT /host="Homo sapiens" FT /strain="HMSC061C10" FT /mol_type="genomic DNA" FT /isolation_source="vaginal/rectal" FT /db_xref="taxon:1715056" XX CO join(LTQK01000105.1:1..7146) // ID KV830273; SV 1; linear; genomic DNA; CON; PRO; 124867 BP. XX AC KV830273; LTQK01000000; XX PR Project:PRJNA296184; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Staphylococcus sp. HMSC061C10 genomic scaffold Scaffold71, whole genome DE shotgun sequence. XX KW . XX OS Staphylococcus sp. HMSC061C10 OC Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcaceae; OC Staphylococcus. XX RN [1] RP 1-124867 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (09-FEB-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; 6217da303e38cac4c243908815c3e484. DR ENA; LTQK01000000; SET. DR ENA; LTQK00000000; SET. DR BioSample; SAMN04498585. XX CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 03/03/2016 04:16:58 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 2,410 CC CDS (total) :: 2,382 CC Genes (coding) :: 2,324 CC CDS (coding) :: 2,324 CC Genes (RNA) :: 28 CC rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC tRNAs :: 21 CC ncRNAs :: 4 CC Pseudo Genes (total) :: 58 CC Pseudo Genes (ambiguous residues) :: 0 of 58 CC Pseudo Genes (frameshifted) :: 8 of 58 CC Pseudo Genes (incomplete) :: 44 of 58 CC Pseudo Genes (internal stop) :: 6 of 58 CC Genome Coverage :: 156x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 156x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..124867 FT /organism="Staphylococcus sp. HMSC061C10" FT /host="Homo sapiens" FT /strain="HMSC061C10" FT /mol_type="genomic DNA" FT /isolation_source="vaginal/rectal" FT /db_xref="taxon:1715056" XX CO join(LTQK01000106.1:1..124867) // ID KV830274; SV 1; linear; genomic DNA; CON; PRO; 1734 BP. XX AC KV830274; LTQK01000000; XX PR Project:PRJNA296184; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Staphylococcus sp. HMSC061C10 genomic scaffold Scaffold72, whole genome DE shotgun sequence. XX KW . XX OS Staphylococcus sp. HMSC061C10 OC Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcaceae; OC Staphylococcus. XX RN [1] RP 1-1734 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (09-FEB-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; 8cb5a4d76a622ceaa22b1d5346e9804e. DR ENA; LTQK01000000; SET. DR ENA; LTQK00000000; SET. DR BioSample; SAMN04498585. XX CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 03/03/2016 04:16:58 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 2,410 CC CDS (total) :: 2,382 CC Genes (coding) :: 2,324 CC CDS (coding) :: 2,324 CC Genes (RNA) :: 28 CC rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC tRNAs :: 21 CC ncRNAs :: 4 CC Pseudo Genes (total) :: 58 CC Pseudo Genes (ambiguous residues) :: 0 of 58 CC Pseudo Genes (frameshifted) :: 8 of 58 CC Pseudo Genes (incomplete) :: 44 of 58 CC Pseudo Genes (internal stop) :: 6 of 58 CC Genome Coverage :: 156x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 156x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..1734 FT /organism="Staphylococcus sp. HMSC061C10" FT /host="Homo sapiens" FT /strain="HMSC061C10" FT /mol_type="genomic DNA" FT /isolation_source="vaginal/rectal" FT /db_xref="taxon:1715056" XX CO join(LTQK01000107.1:1..1734) // ID KV830275; SV 1; linear; genomic DNA; CON; PRO; 46194 BP. XX AC KV830275; LTQK01000000; XX PR Project:PRJNA296184; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Staphylococcus sp. HMSC061C10 genomic scaffold Scaffold85, whole genome DE shotgun sequence. XX KW . XX OS Staphylococcus sp. HMSC061C10 OC Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcaceae; OC Staphylococcus. XX RN [1] RP 1-46194 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (09-FEB-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; d5354f04161934a0b9885434734a52ee. DR ENA; LTQK01000000; SET. DR ENA; LTQK00000000; SET. DR BioSample; SAMN04498585. XX CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 03/03/2016 04:16:58 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 2,410 CC CDS (total) :: 2,382 CC Genes (coding) :: 2,324 CC CDS (coding) :: 2,324 CC Genes (RNA) :: 28 CC rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC tRNAs :: 21 CC ncRNAs :: 4 CC Pseudo Genes (total) :: 58 CC Pseudo Genes (ambiguous residues) :: 0 of 58 CC Pseudo Genes (frameshifted) :: 8 of 58 CC Pseudo Genes (incomplete) :: 44 of 58 CC Pseudo Genes (internal stop) :: 6 of 58 CC Genome Coverage :: 156x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 156x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..46194 FT /organism="Staphylococcus sp. HMSC061C10" FT /host="Homo sapiens" FT /strain="HMSC061C10" FT /mol_type="genomic DNA" FT /isolation_source="vaginal/rectal" FT /db_xref="taxon:1715056" FT assembly_gap 36235..36334 FT /estimated_length=unknown FT /gap_type="within scaffold" FT /linkage_evidence="paired-ends" XX CO join(LTQK01000109.1:1..36234,gap(unk100),LTQK01000110.1:1..9860) // ID KV830276; SV 1; linear; genomic DNA; CON; PRO; 1776 BP. XX AC KV830276; LTQK01000000; XX PR Project:PRJNA296184; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Staphylococcus sp. HMSC061C10 genomic scaffold Scaffold91, whole genome DE shotgun sequence. XX KW . XX OS Staphylococcus sp. HMSC061C10 OC Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcaceae; OC Staphylococcus. XX RN [1] RP 1-1776 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (09-FEB-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; 24250e172831cadf63e0e8491e24faf1. DR ENA; LTQK01000000; SET. DR ENA; LTQK00000000; SET. DR BioSample; SAMN04498585. XX CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 03/03/2016 04:16:58 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 2,410 CC CDS (total) :: 2,382 CC Genes (coding) :: 2,324 CC CDS (coding) :: 2,324 CC Genes (RNA) :: 28 CC rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC tRNAs :: 21 CC ncRNAs :: 4 CC Pseudo Genes (total) :: 58 CC Pseudo Genes (ambiguous residues) :: 0 of 58 CC Pseudo Genes (frameshifted) :: 8 of 58 CC Pseudo Genes (incomplete) :: 44 of 58 CC Pseudo Genes (internal stop) :: 6 of 58 CC Genome Coverage :: 156x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 156x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..1776 FT /organism="Staphylococcus sp. HMSC061C10" FT /host="Homo sapiens" FT /strain="HMSC061C10" FT /mol_type="genomic DNA" FT /isolation_source="vaginal/rectal" FT /db_xref="taxon:1715056" XX CO join(LTQK01000111.1:1..1776) // ID KV830277; SV 1; linear; genomic DNA; CON; PRO; 1008 BP. XX AC KV830277; LTQK01000000; XX PR Project:PRJNA296184; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Staphylococcus sp. HMSC061C10 genomic scaffold Scaffold109, whole genome DE shotgun sequence. XX KW . XX OS Staphylococcus sp. HMSC061C10 OC Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcaceae; OC Staphylococcus. XX RN [1] RP 1-1008 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (09-FEB-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; ffb1efb1ef246d0ad67d508762f5fdae. DR ENA; LTQK01000000; SET. DR ENA; LTQK00000000; SET. DR BioSample; SAMN04498585. XX CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 03/03/2016 04:16:58 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 2,410 CC CDS (total) :: 2,382 CC Genes (coding) :: 2,324 CC CDS (coding) :: 2,324 CC Genes (RNA) :: 28 CC rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC tRNAs :: 21 CC ncRNAs :: 4 CC Pseudo Genes (total) :: 58 CC Pseudo Genes (ambiguous residues) :: 0 of 58 CC Pseudo Genes (frameshifted) :: 8 of 58 CC Pseudo Genes (incomplete) :: 44 of 58 CC Pseudo Genes (internal stop) :: 6 of 58 CC Genome Coverage :: 156x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 156x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..1008 FT /organism="Staphylococcus sp. HMSC061C10" FT /host="Homo sapiens" FT /strain="HMSC061C10" FT /mol_type="genomic DNA" FT /isolation_source="vaginal/rectal" FT /db_xref="taxon:1715056" XX CO join(LTQK01000003.1:1..1008) // ID KV830278; SV 1; linear; genomic DNA; CON; PRO; 235 BP. XX AC KV830278; LTQK01000000; XX PR Project:PRJNA296184; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Staphylococcus sp. HMSC061C10 genomic scaffold Scaffold136, whole genome DE shotgun sequence. XX KW . XX OS Staphylococcus sp. HMSC061C10 OC Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcaceae; OC Staphylococcus. XX RN [1] RP 1-235 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (09-FEB-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; 7384c8ef7d822007f8907a087ed7baea. DR ENA; LTQK01000000; SET. DR ENA; LTQK00000000; SET. DR BioSample; SAMN04498585. XX CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 03/03/2016 04:16:58 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 2,410 CC CDS (total) :: 2,382 CC Genes (coding) :: 2,324 CC CDS (coding) :: 2,324 CC Genes (RNA) :: 28 CC rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC tRNAs :: 21 CC ncRNAs :: 4 CC Pseudo Genes (total) :: 58 CC Pseudo Genes (ambiguous residues) :: 0 of 58 CC Pseudo Genes (frameshifted) :: 8 of 58 CC Pseudo Genes (incomplete) :: 44 of 58 CC Pseudo Genes (internal stop) :: 6 of 58 CC Genome Coverage :: 156x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 156x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..235 FT /organism="Staphylococcus sp. HMSC061C10" FT /host="Homo sapiens" FT /strain="HMSC061C10" FT /mol_type="genomic DNA" FT /isolation_source="vaginal/rectal" FT /db_xref="taxon:1715056" XX CO join(LTQK01000006.1:1..235) // ID KV830279; SV 1; linear; genomic DNA; CON; PRO; 187892 BP. XX AC KV830279; LTQK01000000; XX PR Project:PRJNA296184; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Staphylococcus sp. HMSC061C10 genomic scaffold Scaffold147, whole genome DE shotgun sequence. XX KW . XX OS Staphylococcus sp. HMSC061C10 OC Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcaceae; OC Staphylococcus. XX RN [1] RP 1-187892 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (09-FEB-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; e7d5692924d97179e9fb1d842d9d1732. DR ENA; LTQK01000000; SET. DR ENA; LTQK00000000; SET. DR BioSample; SAMN04498585. XX CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 03/03/2016 04:16:58 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 2,410 CC CDS (total) :: 2,382 CC Genes (coding) :: 2,324 CC CDS (coding) :: 2,324 CC Genes (RNA) :: 28 CC rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC tRNAs :: 21 CC ncRNAs :: 4 CC Pseudo Genes (total) :: 58 CC Pseudo Genes (ambiguous residues) :: 0 of 58 CC Pseudo Genes (frameshifted) :: 8 of 58 CC Pseudo Genes (incomplete) :: 44 of 58 CC Pseudo Genes (internal stop) :: 6 of 58 CC Genome Coverage :: 156x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 156x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..187892 FT /organism="Staphylococcus sp. HMSC061C10" FT /host="Homo sapiens" FT /strain="HMSC061C10" FT /mol_type="genomic DNA" FT /isolation_source="vaginal/rectal" FT /db_xref="taxon:1715056" FT assembly_gap 50798..50897 FT /estimated_length=unknown FT /gap_type="within scaffold" FT /linkage_evidence="paired-ends" FT assembly_gap 52925..53024 FT /estimated_length=unknown FT /gap_type="within scaffold" FT /linkage_evidence="paired-ends" XX CO join(LTQK01000007.1:1..50797,gap(unk100),LTQK01000008.1:1..2027, CO gap(unk100),LTQK01000009.1:1..134868) // ID KV830280; SV 1; linear; genomic DNA; CON; PRO; 452 BP. XX AC KV830280; LTQK01000000; XX PR Project:PRJNA296184; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Staphylococcus sp. HMSC061C10 genomic scaffold Scaffold170, whole genome DE shotgun sequence. XX KW . XX OS Staphylococcus sp. HMSC061C10 OC Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcaceae; OC Staphylococcus. XX RN [1] RP 1-452 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (09-FEB-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; 7002b7343f66b8720176523c76d79a48. DR ENA; LTQK01000000; SET. DR ENA; LTQK00000000; SET. DR BioSample; SAMN04498585. XX CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 03/03/2016 04:16:58 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 2,410 CC CDS (total) :: 2,382 CC Genes (coding) :: 2,324 CC CDS (coding) :: 2,324 CC Genes (RNA) :: 28 CC rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC tRNAs :: 21 CC ncRNAs :: 4 CC Pseudo Genes (total) :: 58 CC Pseudo Genes (ambiguous residues) :: 0 of 58 CC Pseudo Genes (frameshifted) :: 8 of 58 CC Pseudo Genes (incomplete) :: 44 of 58 CC Pseudo Genes (internal stop) :: 6 of 58 CC Genome Coverage :: 156x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 156x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..452 FT /organism="Staphylococcus sp. HMSC061C10" FT /host="Homo sapiens" FT /strain="HMSC061C10" FT /mol_type="genomic DNA" FT /isolation_source="vaginal/rectal" FT /db_xref="taxon:1715056" XX CO join(LTQK01000010.1:1..452) // ID KV830281; SV 1; linear; genomic DNA; CON; PRO; 1803 BP. XX AC KV830281; LTQK01000000; XX PR Project:PRJNA296184; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Staphylococcus sp. HMSC061C10 genomic scaffold Scaffold172, whole genome DE shotgun sequence. XX KW . XX OS Staphylococcus sp. HMSC061C10 OC Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcaceae; OC Staphylococcus. XX RN [1] RP 1-1803 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (09-FEB-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; cfd7656990d4c034bc1a6630b2be6755. DR ENA; LTQK01000000; SET. DR ENA; LTQK00000000; SET. DR BioSample; SAMN04498585. XX CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 03/03/2016 04:16:58 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 2,410 CC CDS (total) :: 2,382 CC Genes (coding) :: 2,324 CC CDS (coding) :: 2,324 CC Genes (RNA) :: 28 CC rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC tRNAs :: 21 CC ncRNAs :: 4 CC Pseudo Genes (total) :: 58 CC Pseudo Genes (ambiguous residues) :: 0 of 58 CC Pseudo Genes (frameshifted) :: 8 of 58 CC Pseudo Genes (incomplete) :: 44 of 58 CC Pseudo Genes (internal stop) :: 6 of 58 CC Genome Coverage :: 156x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 156x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..1803 FT /organism="Staphylococcus sp. HMSC061C10" FT /host="Homo sapiens" FT /strain="HMSC061C10" FT /mol_type="genomic DNA" FT /isolation_source="vaginal/rectal" FT /db_xref="taxon:1715056" XX CO join(LTQK01000011.1:1..1803) // ID KV830282; SV 1; linear; genomic DNA; CON; PRO; 52699 BP. XX AC KV830282; LTQK01000000; XX PR Project:PRJNA296184; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Staphylococcus sp. HMSC061C10 genomic scaffold Scaffold187, whole genome DE shotgun sequence. XX KW . XX OS Staphylococcus sp. HMSC061C10 OC Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcaceae; OC Staphylococcus. XX RN [1] RP 1-52699 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (09-FEB-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; 3bd5983e2fec2b2cc17eb9bb7f5bde61. DR ENA; LTQK01000000; SET. DR ENA; LTQK00000000; SET. DR BioSample; SAMN04498585. XX CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 03/03/2016 04:16:58 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 2,410 CC CDS (total) :: 2,382 CC Genes (coding) :: 2,324 CC CDS (coding) :: 2,324 CC Genes (RNA) :: 28 CC rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC tRNAs :: 21 CC ncRNAs :: 4 CC Pseudo Genes (total) :: 58 CC Pseudo Genes (ambiguous residues) :: 0 of 58 CC Pseudo Genes (frameshifted) :: 8 of 58 CC Pseudo Genes (incomplete) :: 44 of 58 CC Pseudo Genes (internal stop) :: 6 of 58 CC Genome Coverage :: 156x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 156x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..52699 FT /organism="Staphylococcus sp. HMSC061C10" FT /host="Homo sapiens" FT /strain="HMSC061C10" FT /mol_type="genomic DNA" FT /isolation_source="vaginal/rectal" FT /db_xref="taxon:1715056" XX CO join(LTQK01000012.1:1..52699) // ID KV830283; SV 1; linear; genomic DNA; CON; PRO; 68980 BP. XX AC KV830283; LTQK01000000; XX PR Project:PRJNA296184; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Staphylococcus sp. HMSC061C10 genomic scaffold Scaffold196, whole genome DE shotgun sequence. XX KW . XX OS Staphylococcus sp. HMSC061C10 OC Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcaceae; OC Staphylococcus. XX RN [1] RP 1-68980 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (09-FEB-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; 81359a9ee987a9bef2f0ae6f518737a8. DR ENA; LTQK01000000; SET. DR ENA; LTQK00000000; SET. DR BioSample; SAMN04498585. XX CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 03/03/2016 04:16:58 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 2,410 CC CDS (total) :: 2,382 CC Genes (coding) :: 2,324 CC CDS (coding) :: 2,324 CC Genes (RNA) :: 28 CC rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC tRNAs :: 21 CC ncRNAs :: 4 CC Pseudo Genes (total) :: 58 CC Pseudo Genes (ambiguous residues) :: 0 of 58 CC Pseudo Genes (frameshifted) :: 8 of 58 CC Pseudo Genes (incomplete) :: 44 of 58 CC Pseudo Genes (internal stop) :: 6 of 58 CC Genome Coverage :: 156x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 156x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..68980 FT /organism="Staphylococcus sp. HMSC061C10" FT /host="Homo sapiens" FT /strain="HMSC061C10" FT /mol_type="genomic DNA" FT /isolation_source="vaginal/rectal" FT /db_xref="taxon:1715056" FT assembly_gap 38431..38530 FT /estimated_length=unknown FT /gap_type="within scaffold" FT /linkage_evidence="paired-ends" FT assembly_gap 59798..59897 FT /estimated_length=unknown FT /gap_type="within scaffold" FT /linkage_evidence="paired-ends" XX CO join(LTQK01000018.1:1..38430,gap(unk100),LTQK01000019.1:1..21267, CO gap(unk100),LTQK01000020.1:1..9083) // ID KV830284; SV 1; linear; genomic DNA; CON; PRO; 78603 BP. XX AC KV830284; LTQK01000000; XX PR Project:PRJNA296184; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Staphylococcus sp. HMSC061C10 genomic scaffold Scaffold197, whole genome DE shotgun sequence. XX KW . XX OS Staphylococcus sp. HMSC061C10 OC Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcaceae; OC Staphylococcus. XX RN [1] RP 1-78603 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (09-FEB-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; a53892d21d60fd8e5be30775c6aa3be8. DR ENA; LTQK01000000; SET. DR ENA; LTQK00000000; SET. DR BioSample; SAMN04498585. XX CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 03/03/2016 04:16:58 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 2,410 CC CDS (total) :: 2,382 CC Genes (coding) :: 2,324 CC CDS (coding) :: 2,324 CC Genes (RNA) :: 28 CC rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC tRNAs :: 21 CC ncRNAs :: 4 CC Pseudo Genes (total) :: 58 CC Pseudo Genes (ambiguous residues) :: 0 of 58 CC Pseudo Genes (frameshifted) :: 8 of 58 CC Pseudo Genes (incomplete) :: 44 of 58 CC Pseudo Genes (internal stop) :: 6 of 58 CC Genome Coverage :: 156x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 156x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..78603 FT /organism="Staphylococcus sp. HMSC061C10" FT /host="Homo sapiens" FT /strain="HMSC061C10" FT /mol_type="genomic DNA" FT /isolation_source="vaginal/rectal" FT /db_xref="taxon:1715056" XX CO join(LTQK01000021.1:1..78603) // ID KV830285; SV 1; linear; genomic DNA; CON; PRO; 3116 BP. XX AC KV830285; LTQK01000000; XX PR Project:PRJNA296184; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Staphylococcus sp. HMSC061C10 genomic scaffold Scaffold236, whole genome DE shotgun sequence. XX KW . XX OS Staphylococcus sp. HMSC061C10 OC Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcaceae; OC Staphylococcus. XX RN [1] RP 1-3116 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (09-FEB-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; 2b7be9384b9b5ace13fc686defa5c62a. DR ENA; LTQK01000000; SET. DR ENA; LTQK00000000; SET. DR BioSample; SAMN04498585. XX CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 03/03/2016 04:16:58 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 2,410 CC CDS (total) :: 2,382 CC Genes (coding) :: 2,324 CC CDS (coding) :: 2,324 CC Genes (RNA) :: 28 CC rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC tRNAs :: 21 CC ncRNAs :: 4 CC Pseudo Genes (total) :: 58 CC Pseudo Genes (ambiguous residues) :: 0 of 58 CC Pseudo Genes (frameshifted) :: 8 of 58 CC Pseudo Genes (incomplete) :: 44 of 58 CC Pseudo Genes (internal stop) :: 6 of 58 CC Genome Coverage :: 156x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 156x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..3116 FT /organism="Staphylococcus sp. HMSC061C10" FT /host="Homo sapiens" FT /strain="HMSC061C10" FT /mol_type="genomic DNA" FT /isolation_source="vaginal/rectal" FT /db_xref="taxon:1715056" XX CO join(LTQK01000023.1:1..3116) // ID KV830286; SV 1; linear; genomic DNA; CON; PRO; 207935 BP. XX AC KV830286; LTQK01000000; XX PR Project:PRJNA296184; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Staphylococcus sp. HMSC061C10 genomic scaffold Scaffold241, whole genome DE shotgun sequence. XX KW . XX OS Staphylococcus sp. HMSC061C10 OC Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcaceae; OC Staphylococcus. XX RN [1] RP 1-207935 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (09-FEB-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; 7523add68e3fcb10a7ae3be2d2323b5f. DR ENA; LTQK01000000; SET. DR ENA; LTQK00000000; SET. DR BioSample; SAMN04498585. XX CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 03/03/2016 04:16:58 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 2,410 CC CDS (total) :: 2,382 CC Genes (coding) :: 2,324 CC CDS (coding) :: 2,324 CC Genes (RNA) :: 28 CC rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC tRNAs :: 21 CC ncRNAs :: 4 CC Pseudo Genes (total) :: 58 CC Pseudo Genes (ambiguous residues) :: 0 of 58 CC Pseudo Genes (frameshifted) :: 8 of 58 CC Pseudo Genes (incomplete) :: 44 of 58 CC Pseudo Genes (internal stop) :: 6 of 58 CC Genome Coverage :: 156x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 156x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..207935 FT /organism="Staphylococcus sp. HMSC061C10" FT /host="Homo sapiens" FT /strain="HMSC061C10" FT /mol_type="genomic DNA" FT /isolation_source="vaginal/rectal" FT /db_xref="taxon:1715056" FT assembly_gap 3034..3133 FT /estimated_length=unknown FT /gap_type="within scaffold" FT /linkage_evidence="paired-ends" FT assembly_gap 50614..50713 FT /estimated_length=unknown FT /gap_type="within scaffold" FT /linkage_evidence="paired-ends" FT assembly_gap 90966..91065 FT /estimated_length=unknown FT /gap_type="within scaffold" FT /linkage_evidence="paired-ends" FT assembly_gap 120257..120356 FT /estimated_length=unknown FT /gap_type="within scaffold" FT /linkage_evidence="paired-ends" FT assembly_gap 121694..121793 FT /estimated_length=unknown FT /gap_type="within scaffold" FT /linkage_evidence="paired-ends" FT assembly_gap 122042..122141 FT /estimated_length=unknown FT /gap_type="within scaffold" FT /linkage_evidence="paired-ends" FT assembly_gap 122522..122621 FT /estimated_length=unknown FT /gap_type="within scaffold" FT /linkage_evidence="paired-ends" FT assembly_gap 122879..122978 FT /estimated_length=unknown FT /gap_type="within scaffold" FT /linkage_evidence="paired-ends" FT assembly_gap 124438..124537 FT /estimated_length=unknown FT /gap_type="within scaffold" FT /linkage_evidence="paired-ends" FT assembly_gap 205442..205541 FT /estimated_length=unknown FT /gap_type="within scaffold" FT /linkage_evidence="paired-ends" FT assembly_gap 206224..206323 FT /estimated_length=unknown FT /gap_type="within scaffold" FT /linkage_evidence="paired-ends" XX CO join(LTQK01000024.1:1..3033,gap(unk100),LTQK01000029.1:1..47480, CO gap(unk100),LTQK01000030.1:1..40252,gap(unk100),LTQK01000031.1:1..29191, CO gap(unk100),LTQK01000032.1:1..1337,gap(unk100),LTQK01000033.1:1..248, CO gap(unk100),LTQK01000034.1:1..380,gap(unk100),LTQK01000035.1:1..257, CO gap(unk100),LTQK01000025.1:1..1459,gap(unk100),LTQK01000026.1:1..80904, CO gap(unk100),LTQK01000027.1:1..682,gap(unk100),LTQK01000028.1:1..1612) // ID KV830287; SV 1; linear; genomic DNA; CON; PRO; 56116 BP. XX AC KV830287; LTQK01000000; XX PR Project:PRJNA296184; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Staphylococcus sp. HMSC061C10 genomic scaffold Scaffold253, whole genome DE shotgun sequence. XX KW . XX OS Staphylococcus sp. HMSC061C10 OC Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcaceae; OC Staphylococcus. XX RN [1] RP 1-56116 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (09-FEB-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; 863fdcce33a37f795a31ee8d27f0b37c. DR ENA; LTQK01000000; SET. DR ENA; LTQK00000000; SET. DR BioSample; SAMN04498585. XX CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 03/03/2016 04:16:58 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 2,410 CC CDS (total) :: 2,382 CC Genes (coding) :: 2,324 CC CDS (coding) :: 2,324 CC Genes (RNA) :: 28 CC rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC tRNAs :: 21 CC ncRNAs :: 4 CC Pseudo Genes (total) :: 58 CC Pseudo Genes (ambiguous residues) :: 0 of 58 CC Pseudo Genes (frameshifted) :: 8 of 58 CC Pseudo Genes (incomplete) :: 44 of 58 CC Pseudo Genes (internal stop) :: 6 of 58 CC Genome Coverage :: 156x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 156x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..56116 FT /organism="Staphylococcus sp. HMSC061C10" FT /host="Homo sapiens" FT /strain="HMSC061C10" FT /mol_type="genomic DNA" FT /isolation_source="vaginal/rectal" FT /db_xref="taxon:1715056" FT assembly_gap 7700..7799 FT /estimated_length=unknown FT /gap_type="within scaffold" FT /linkage_evidence="paired-ends" FT assembly_gap 40395..40494 FT /estimated_length=unknown FT /gap_type="within scaffold" FT /linkage_evidence="paired-ends" XX CO join(LTQK01000036.1:1..7699,gap(unk100),LTQK01000037.1:1..32595, CO gap(unk100),LTQK01000038.1:1..15622) // ID KV830288; SV 1; linear; genomic DNA; CON; PRO; 66168 BP. XX AC KV830288; LTQK01000000; XX PR Project:PRJNA296184; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Staphylococcus sp. HMSC061C10 genomic scaffold Scaffold263, whole genome DE shotgun sequence. XX KW . XX OS Staphylococcus sp. HMSC061C10 OC Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcaceae; OC Staphylococcus. XX RN [1] RP 1-66168 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (09-FEB-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; c32094087746674d1cbdfcd101cbfdc4. DR ENA; LTQK01000000; SET. DR ENA; LTQK00000000; SET. DR BioSample; SAMN04498585. XX CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 03/03/2016 04:16:58 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 2,410 CC CDS (total) :: 2,382 CC Genes (coding) :: 2,324 CC CDS (coding) :: 2,324 CC Genes (RNA) :: 28 CC rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC tRNAs :: 21 CC ncRNAs :: 4 CC Pseudo Genes (total) :: 58 CC Pseudo Genes (ambiguous residues) :: 0 of 58 CC Pseudo Genes (frameshifted) :: 8 of 58 CC Pseudo Genes (incomplete) :: 44 of 58 CC Pseudo Genes (internal stop) :: 6 of 58 CC Genome Coverage :: 156x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 156x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..66168 FT /organism="Staphylococcus sp. HMSC061C10" FT /host="Homo sapiens" FT /strain="HMSC061C10" FT /mol_type="genomic DNA" FT /isolation_source="vaginal/rectal" FT /db_xref="taxon:1715056" XX CO join(LTQK01000039.1:1..66168) // ID KV830289; SV 1; linear; genomic DNA; CON; PRO; 76275 BP. XX AC KV830289; LTQK01000000; XX PR Project:PRJNA296184; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Staphylococcus sp. HMSC061C10 genomic scaffold Scaffold268, whole genome DE shotgun sequence. XX KW . XX OS Staphylococcus sp. HMSC061C10 OC Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcaceae; OC Staphylococcus. XX RN [1] RP 1-76275 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (09-FEB-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; 4b87a0e67f104c5f46732764b829028e. DR ENA; LTQK01000000; SET. DR ENA; LTQK00000000; SET. DR BioSample; SAMN04498585. XX CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 03/03/2016 04:16:58 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 2,410 CC CDS (total) :: 2,382 CC Genes (coding) :: 2,324 CC CDS (coding) :: 2,324 CC Genes (RNA) :: 28 CC rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC tRNAs :: 21 CC ncRNAs :: 4 CC Pseudo Genes (total) :: 58 CC Pseudo Genes (ambiguous residues) :: 0 of 58 CC Pseudo Genes (frameshifted) :: 8 of 58 CC Pseudo Genes (incomplete) :: 44 of 58 CC Pseudo Genes (internal stop) :: 6 of 58 CC Genome Coverage :: 156x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 156x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..76275 FT /organism="Staphylococcus sp. HMSC061C10" FT /host="Homo sapiens" FT /strain="HMSC061C10" FT /mol_type="genomic DNA" FT /isolation_source="vaginal/rectal" FT /db_xref="taxon:1715056" FT assembly_gap 35023..35122 FT /estimated_length=unknown FT /gap_type="within scaffold" FT /linkage_evidence="paired-ends" FT assembly_gap 58390..58489 FT /estimated_length=unknown FT /gap_type="within scaffold" FT /linkage_evidence="paired-ends" FT assembly_gap 73173..73272 FT /estimated_length=unknown FT /gap_type="within scaffold" FT /linkage_evidence="paired-ends" XX CO join(LTQK01000040.1:1..35022,gap(unk100),LTQK01000041.1:1..23267, CO gap(unk100),LTQK01000042.1:1..14683,gap(unk100),LTQK01000043.1:1..3003) // ID KV830290; SV 1; linear; genomic DNA; CON; PRO; 29848 BP. XX AC KV830290; LTQK01000000; XX PR Project:PRJNA296184; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Staphylococcus sp. HMSC061C10 genomic scaffold Scaffold406, whole genome DE shotgun sequence. XX KW . XX OS Staphylococcus sp. HMSC061C10 OC Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcaceae; OC Staphylococcus. XX RN [1] RP 1-29848 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (09-FEB-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; 1478b902eae8fb555d41b9c54aaa554b. DR ENA; LTQK01000000; SET. DR ENA; LTQK00000000; SET. DR BioSample; SAMN04498585. XX CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 03/03/2016 04:16:58 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 2,410 CC CDS (total) :: 2,382 CC Genes (coding) :: 2,324 CC CDS (coding) :: 2,324 CC Genes (RNA) :: 28 CC rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC tRNAs :: 21 CC ncRNAs :: 4 CC Pseudo Genes (total) :: 58 CC Pseudo Genes (ambiguous residues) :: 0 of 58 CC Pseudo Genes (frameshifted) :: 8 of 58 CC Pseudo Genes (incomplete) :: 44 of 58 CC Pseudo Genes (internal stop) :: 6 of 58 CC Genome Coverage :: 156x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 156x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..29848 FT /organism="Staphylococcus sp. HMSC061C10" FT /host="Homo sapiens" FT /strain="HMSC061C10" FT /mol_type="genomic DNA" FT /isolation_source="vaginal/rectal" FT /db_xref="taxon:1715056" XX CO join(LTQK01000055.1:1..29848) // ID KV830291; SV 1; linear; genomic DNA; CON; PRO; 209 BP. XX AC KV830291; LTQK01000000; XX PR Project:PRJNA296184; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Staphylococcus sp. HMSC061C10 genomic scaffold Scaffold438, whole genome DE shotgun sequence. XX KW . XX OS Staphylococcus sp. HMSC061C10 OC Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcaceae; OC Staphylococcus. XX RN [1] RP 1-209 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (09-FEB-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; 6c309b50474af50a767bfbea9b62233d. DR ENA; LTQK01000000; SET. DR ENA; LTQK00000000; SET. DR BioSample; SAMN04498585. XX CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 03/03/2016 04:16:58 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 2,410 CC CDS (total) :: 2,382 CC Genes (coding) :: 2,324 CC CDS (coding) :: 2,324 CC Genes (RNA) :: 28 CC rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC tRNAs :: 21 CC ncRNAs :: 4 CC Pseudo Genes (total) :: 58 CC Pseudo Genes (ambiguous residues) :: 0 of 58 CC Pseudo Genes (frameshifted) :: 8 of 58 CC Pseudo Genes (incomplete) :: 44 of 58 CC Pseudo Genes (internal stop) :: 6 of 58 CC Genome Coverage :: 156x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 156x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..209 FT /organism="Staphylococcus sp. HMSC061C10" FT /host="Homo sapiens" FT /strain="HMSC061C10" FT /mol_type="genomic DNA" FT /isolation_source="vaginal/rectal" FT /db_xref="taxon:1715056" XX CO join(LTQK01000061.1:1..209) // ID KV830292; SV 1; linear; genomic DNA; CON; PRO; 301865 BP. XX AC KV830292; LTQK01000000; XX PR Project:PRJNA296184; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Staphylococcus sp. HMSC061C10 genomic scaffold Scaffold473, whole genome DE shotgun sequence. XX KW . XX OS Staphylococcus sp. HMSC061C10 OC Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcaceae; OC Staphylococcus. XX RN [1] RP 1-301865 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (09-FEB-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; d040eb3eeccbfb73124bf160c3a3a796. DR ENA; LTQK01000000; SET. DR ENA; LTQK00000000; SET. DR BioSample; SAMN04498585. XX CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 03/03/2016 04:16:58 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 2,410 CC CDS (total) :: 2,382 CC Genes (coding) :: 2,324 CC CDS (coding) :: 2,324 CC Genes (RNA) :: 28 CC rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC tRNAs :: 21 CC ncRNAs :: 4 CC Pseudo Genes (total) :: 58 CC Pseudo Genes (ambiguous residues) :: 0 of 58 CC Pseudo Genes (frameshifted) :: 8 of 58 CC Pseudo Genes (incomplete) :: 44 of 58 CC Pseudo Genes (internal stop) :: 6 of 58 CC Genome Coverage :: 156x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 156x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..301865 FT /organism="Staphylococcus sp. HMSC061C10" FT /host="Homo sapiens" FT /strain="HMSC061C10" FT /mol_type="genomic DNA" FT /isolation_source="vaginal/rectal" FT /db_xref="taxon:1715056" FT assembly_gap 41874..41973 FT /estimated_length=unknown FT /gap_type="within scaffold" FT /linkage_evidence="paired-ends" FT assembly_gap 55482..55581 FT /estimated_length=unknown FT /gap_type="within scaffold" FT /linkage_evidence="paired-ends" FT assembly_gap 85060..85159 FT /estimated_length=unknown FT /gap_type="within scaffold" FT /linkage_evidence="paired-ends" FT assembly_gap 117294..117393 FT /estimated_length=unknown FT /gap_type="within scaffold" FT /linkage_evidence="paired-ends" FT assembly_gap 117641..117740 FT /estimated_length=unknown FT /gap_type="within scaffold" FT /linkage_evidence="paired-ends" FT assembly_gap 138714..138813 FT /estimated_length=unknown FT /gap_type="within scaffold" FT /linkage_evidence="paired-ends" FT assembly_gap 159242..159341 FT /estimated_length=unknown FT /gap_type="within scaffold" FT /linkage_evidence="paired-ends" FT assembly_gap 160239..160338 FT /estimated_length=unknown FT /gap_type="within scaffold" FT /linkage_evidence="paired-ends" FT assembly_gap 161083..161182 FT /estimated_length=unknown FT /gap_type="within scaffold" FT /linkage_evidence="paired-ends" FT assembly_gap 162146..162245 FT /estimated_length=unknown FT /gap_type="within scaffold" FT /linkage_evidence="paired-ends" FT assembly_gap 202042..202141 FT /estimated_length=unknown FT /gap_type="within scaffold" FT /linkage_evidence="paired-ends" FT assembly_gap 274032..274131 FT /estimated_length=unknown FT /gap_type="within scaffold" FT /linkage_evidence="paired-ends" XX CO join(LTQK01000064.1:1..41873,gap(unk100),LTQK01000069.1:1..13508, CO gap(unk100),LTQK01000070.1:1..29478,gap(unk100),LTQK01000071.1:1..32134, CO gap(unk100),LTQK01000072.1:1..247,gap(unk100),LTQK01000073.1:1..20973, CO gap(unk100),LTQK01000074.1:1..20428,gap(unk100),LTQK01000075.1:1..897, CO gap(unk100),LTQK01000076.1:1..744,gap(unk100),LTQK01000065.1:1..963, CO gap(unk100),LTQK01000066.1:1..39796,gap(unk100),LTQK01000067.1:1..71890, CO gap(unk100),LTQK01000068.1:1..27734) // ID KV830293; SV 1; linear; genomic DNA; CON; PRO; 211 BP. XX AC KV830293; LTQK01000000; XX PR Project:PRJNA296184; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Staphylococcus sp. HMSC061C10 genomic scaffold Scaffold478, whole genome DE shotgun sequence. XX KW . XX OS Staphylococcus sp. HMSC061C10 OC Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcaceae; OC Staphylococcus. XX RN [1] RP 1-211 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (09-FEB-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; c502ca396b2339817d6c1e50b00d002d. DR ENA; LTQK01000000; SET. DR ENA; LTQK00000000; SET. DR BioSample; SAMN04498585. XX CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 03/03/2016 04:16:58 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 2,410 CC CDS (total) :: 2,382 CC Genes (coding) :: 2,324 CC CDS (coding) :: 2,324 CC Genes (RNA) :: 28 CC rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC tRNAs :: 21 CC ncRNAs :: 4 CC Pseudo Genes (total) :: 58 CC Pseudo Genes (ambiguous residues) :: 0 of 58 CC Pseudo Genes (frameshifted) :: 8 of 58 CC Pseudo Genes (incomplete) :: 44 of 58 CC Pseudo Genes (internal stop) :: 6 of 58 CC Genome Coverage :: 156x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 156x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..211 FT /organism="Staphylococcus sp. HMSC061C10" FT /host="Homo sapiens" FT /strain="HMSC061C10" FT /mol_type="genomic DNA" FT /isolation_source="vaginal/rectal" FT /db_xref="taxon:1715056" XX CO join(LTQK01000077.1:1..211) // ID KV830294; SV 1; linear; genomic DNA; CON; PRO; 791 BP. XX AC KV830294; LTQK01000000; XX PR Project:PRJNA296184; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Staphylococcus sp. HMSC061C10 genomic scaffold Scaffold486, whole genome DE shotgun sequence. XX KW . XX OS Staphylococcus sp. HMSC061C10 OC Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcaceae; OC Staphylococcus. XX RN [1] RP 1-791 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (09-FEB-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; d6c895189ef9071f5f094b75601fb759. DR ENA; LTQK01000000; SET. DR ENA; LTQK00000000; SET. DR BioSample; SAMN04498585. XX CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 03/03/2016 04:16:58 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 2,410 CC CDS (total) :: 2,382 CC Genes (coding) :: 2,324 CC CDS (coding) :: 2,324 CC Genes (RNA) :: 28 CC rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC tRNAs :: 21 CC ncRNAs :: 4 CC Pseudo Genes (total) :: 58 CC Pseudo Genes (ambiguous residues) :: 0 of 58 CC Pseudo Genes (frameshifted) :: 8 of 58 CC Pseudo Genes (incomplete) :: 44 of 58 CC Pseudo Genes (internal stop) :: 6 of 58 CC Genome Coverage :: 156x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 156x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..791 FT /organism="Staphylococcus sp. HMSC061C10" FT /host="Homo sapiens" FT /strain="HMSC061C10" FT /mol_type="genomic DNA" FT /isolation_source="vaginal/rectal" FT /db_xref="taxon:1715056" XX CO join(LTQK01000078.1:1..791) // ID KV830295; SV 1; linear; genomic DNA; CON; PRO; 58586 BP. XX AC KV830295; LTQK01000000; XX PR Project:PRJNA296184; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Staphylococcus sp. HMSC061C10 genomic scaffold Scaffold510, whole genome DE shotgun sequence. XX KW . XX OS Staphylococcus sp. HMSC061C10 OC Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcaceae; OC Staphylococcus. XX RN [1] RP 1-58586 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (09-FEB-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; a1a3669cc762c25fcaaa87aecdd6804a. DR ENA; LTQK01000000; SET. DR ENA; LTQK00000000; SET. DR BioSample; SAMN04498585. XX CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 03/03/2016 04:16:58 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 2,410 CC CDS (total) :: 2,382 CC Genes (coding) :: 2,324 CC CDS (coding) :: 2,324 CC Genes (RNA) :: 28 CC rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC tRNAs :: 21 CC ncRNAs :: 4 CC Pseudo Genes (total) :: 58 CC Pseudo Genes (ambiguous residues) :: 0 of 58 CC Pseudo Genes (frameshifted) :: 8 of 58 CC Pseudo Genes (incomplete) :: 44 of 58 CC Pseudo Genes (internal stop) :: 6 of 58 CC Genome Coverage :: 156x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 156x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..58586 FT /organism="Staphylococcus sp. HMSC061C10" FT /host="Homo sapiens" FT /strain="HMSC061C10" FT /mol_type="genomic DNA" FT /isolation_source="vaginal/rectal" FT /db_xref="taxon:1715056" FT assembly_gap 57419..57518 FT /estimated_length=unknown FT /gap_type="within scaffold" FT /linkage_evidence="paired-ends" FT assembly_gap 57952..58051 FT /estimated_length=unknown FT /gap_type="within scaffold" FT /linkage_evidence="paired-ends" XX CO join(LTQK01000080.1:1..57418,gap(unk100),LTQK01000081.1:1..433,gap(unk100), CO LTQK01000082.1:1..535) // ID KV830296; SV 1; linear; genomic DNA; CON; PRO; 5431 BP. XX AC KV830296; LTQK01000000; XX PR Project:PRJNA296184; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Staphylococcus sp. HMSC061C10 genomic scaffold Scaffold556, whole genome DE shotgun sequence. XX KW . XX OS Staphylococcus sp. HMSC061C10 OC Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcaceae; OC Staphylococcus. XX RN [1] RP 1-5431 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (09-FEB-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; 2fc6ca0aa7b2a5c678c0e2c1b1f3415c. DR ENA; LTQK01000000; SET. DR ENA; LTQK00000000; SET. DR BioSample; SAMN04498585. XX CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 03/03/2016 04:16:58 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 2,410 CC CDS (total) :: 2,382 CC Genes (coding) :: 2,324 CC CDS (coding) :: 2,324 CC Genes (RNA) :: 28 CC rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC tRNAs :: 21 CC ncRNAs :: 4 CC Pseudo Genes (total) :: 58 CC Pseudo Genes (ambiguous residues) :: 0 of 58 CC Pseudo Genes (frameshifted) :: 8 of 58 CC Pseudo Genes (incomplete) :: 44 of 58 CC Pseudo Genes (internal stop) :: 6 of 58 CC Genome Coverage :: 156x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 156x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..5431 FT /organism="Staphylococcus sp. HMSC061C10" FT /host="Homo sapiens" FT /strain="HMSC061C10" FT /mol_type="genomic DNA" FT /isolation_source="vaginal/rectal" FT /db_xref="taxon:1715056" FT assembly_gap 4592..4691 FT /estimated_length=unknown FT /gap_type="within scaffold" FT /linkage_evidence="paired-ends" XX CO join(LTQK01000086.1:1..4591,gap(unk100),LTQK01000087.1:1..740) // ID KV830297; SV 1; linear; genomic DNA; CON; PRO; 39055 BP. XX AC KV830297; LTQK01000000; XX PR Project:PRJNA296184; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Staphylococcus sp. HMSC061C10 genomic scaffold Scaffold593, whole genome DE shotgun sequence. XX KW . XX OS Staphylococcus sp. HMSC061C10 OC Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcaceae; OC Staphylococcus. XX RN [1] RP 1-39055 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (09-FEB-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; 84d8cf7ebd848ac815ae3f20297fe8e3. DR ENA; LTQK01000000; SET. DR ENA; LTQK00000000; SET. DR BioSample; SAMN04498585. XX CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 03/03/2016 04:16:58 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 2,410 CC CDS (total) :: 2,382 CC Genes (coding) :: 2,324 CC CDS (coding) :: 2,324 CC Genes (RNA) :: 28 CC rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC tRNAs :: 21 CC ncRNAs :: 4 CC Pseudo Genes (total) :: 58 CC Pseudo Genes (ambiguous residues) :: 0 of 58 CC Pseudo Genes (frameshifted) :: 8 of 58 CC Pseudo Genes (incomplete) :: 44 of 58 CC Pseudo Genes (internal stop) :: 6 of 58 CC Genome Coverage :: 156x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 156x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..39055 FT /organism="Staphylococcus sp. HMSC061C10" FT /host="Homo sapiens" FT /strain="HMSC061C10" FT /mol_type="genomic DNA" FT /isolation_source="vaginal/rectal" FT /db_xref="taxon:1715056" FT assembly_gap 38503..38602 FT /estimated_length=unknown FT /gap_type="within scaffold" FT /linkage_evidence="paired-ends" XX CO join(LTQK01000091.1:1..38502,gap(unk100),LTQK01000092.1:1..453) // ID KV830298; SV 1; linear; genomic DNA; CON; PRO; 48678 BP. XX AC KV830298; LTQK01000000; XX PR Project:PRJNA296184; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Staphylococcus sp. HMSC061C10 genomic scaffold Scaffold622, whole genome DE shotgun sequence. XX KW . XX OS Staphylococcus sp. HMSC061C10 OC Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcaceae; OC Staphylococcus. XX RN [1] RP 1-48678 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (09-FEB-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; 667a20f01c0d16387e17285601fad751. DR ENA; LTQK01000000; SET. DR ENA; LTQK00000000; SET. DR BioSample; SAMN04498585. XX CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 03/03/2016 04:16:58 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 2,410 CC CDS (total) :: 2,382 CC Genes (coding) :: 2,324 CC CDS (coding) :: 2,324 CC Genes (RNA) :: 28 CC rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) CC tRNAs :: 21 CC ncRNAs :: 4 CC Pseudo Genes (total) :: 58 CC Pseudo Genes (ambiguous residues) :: 0 of 58 CC Pseudo Genes (frameshifted) :: 8 of 58 CC Pseudo Genes (incomplete) :: 44 of 58 CC Pseudo Genes (internal stop) :: 6 of 58 CC Genome Coverage :: 156x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 156x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..48678 FT /organism="Staphylococcus sp. HMSC061C10" FT /host="Homo sapiens" FT /strain="HMSC061C10" FT /mol_type="genomic DNA" FT /isolation_source="vaginal/rectal" FT /db_xref="taxon:1715056" XX CO join(LTQK01000097.1:1..48678) // ID KV830299; SV 1; linear; genomic DNA; CON; PRO; 5176 BP. XX AC KV830299; LTQJ01000000; XX PR Project:PRJNA296289; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Rothia sp. HMSC061D12 genomic scaffold Scaffold0, whole genome shotgun DE sequence. XX KW . XX OS Rothia sp. HMSC061D12 OC Bacteria; Actinobacteria; Micrococcales; Micrococcaceae; Rothia; OC unclassified Rothia (in: Bacteria). XX RN [1] RP 1-5176 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (09-FEB-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; 12fca06453c7d0d4774b4cd70597a994. DR ENA; LTQJ01000000; SET. DR ENA; LTQJ00000000; SET. DR BioSample; SAMN04498645. XX CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 03/03/2016 04:31:51 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 1,839 CC CDS (total) :: 1,782 CC Genes (coding) :: 1,759 CC CDS (coding) :: 1,759 CC Genes (RNA) :: 57 CC rRNAs :: 4, 1, 1 (5S, 16S, 23S) CC complete rRNAs :: 4, 1, 1 (5S, 16S, 23S) CC tRNAs :: 48 CC ncRNAs :: 3 CC Pseudo Genes (total) :: 23 CC Pseudo Genes (ambiguous residues) :: 0 of 23 CC Pseudo Genes (frameshifted) :: 4 of 23 CC Pseudo Genes (incomplete) :: 18 of 23 CC Pseudo Genes (internal stop) :: 1 of 23 CC CRISPR Arrays :: 4 CC Genome Coverage :: 171x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 171x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..5176 FT /organism="Rothia sp. HMSC061D12" FT /host="Homo sapiens" FT /strain="HMSC061D12" FT /mol_type="genomic DNA" FT /isolation_source="sputum" FT /db_xref="taxon:1715161" XX CO join(LTQJ01000001.1:1..5176) // ID KV830300; SV 1; linear; genomic DNA; CON; PRO; 1475 BP. XX AC KV830300; LTQJ01000000; XX PR Project:PRJNA296289; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Rothia sp. HMSC061D12 genomic scaffold Scaffold1, whole genome shotgun DE sequence. XX KW . XX OS Rothia sp. HMSC061D12 OC Bacteria; Actinobacteria; Micrococcales; Micrococcaceae; Rothia; OC unclassified Rothia (in: Bacteria). XX RN [1] RP 1-1475 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (09-FEB-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; 567ddaf1a554e435c10616b6533beb10. DR ENA; LTQJ01000000; SET. DR ENA; LTQJ00000000; SET. DR BioSample; SAMN04498645. XX CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 03/03/2016 04:31:51 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 1,839 CC CDS (total) :: 1,782 CC Genes (coding) :: 1,759 CC CDS (coding) :: 1,759 CC Genes (RNA) :: 57 CC rRNAs :: 4, 1, 1 (5S, 16S, 23S) CC complete rRNAs :: 4, 1, 1 (5S, 16S, 23S) CC tRNAs :: 48 CC ncRNAs :: 3 CC Pseudo Genes (total) :: 23 CC Pseudo Genes (ambiguous residues) :: 0 of 23 CC Pseudo Genes (frameshifted) :: 4 of 23 CC Pseudo Genes (incomplete) :: 18 of 23 CC Pseudo Genes (internal stop) :: 1 of 23 CC CRISPR Arrays :: 4 CC Genome Coverage :: 171x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 171x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..1475 FT /organism="Rothia sp. HMSC061D12" FT /host="Homo sapiens" FT /strain="HMSC061D12" FT /mol_type="genomic DNA" FT /isolation_source="sputum" FT /db_xref="taxon:1715161" XX CO join(LTQJ01000002.1:1..1475) // ID KV830301; SV 1; linear; genomic DNA; CON; PRO; 1837 BP. XX AC KV830301; LTQJ01000000; XX PR Project:PRJNA296289; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Rothia sp. HMSC061D12 genomic scaffold Scaffold3, whole genome shotgun DE sequence. XX KW . XX OS Rothia sp. HMSC061D12 OC Bacteria; Actinobacteria; Micrococcales; Micrococcaceae; Rothia; OC unclassified Rothia (in: Bacteria). XX RN [1] RP 1-1837 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (09-FEB-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; 45162d39f8ced14b5419390816a84329. DR ENA; LTQJ01000000; SET. DR ENA; LTQJ00000000; SET. DR BioSample; SAMN04498645. XX CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 03/03/2016 04:31:51 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 1,839 CC CDS (total) :: 1,782 CC Genes (coding) :: 1,759 CC CDS (coding) :: 1,759 CC Genes (RNA) :: 57 CC rRNAs :: 4, 1, 1 (5S, 16S, 23S) CC complete rRNAs :: 4, 1, 1 (5S, 16S, 23S) CC tRNAs :: 48 CC ncRNAs :: 3 CC Pseudo Genes (total) :: 23 CC Pseudo Genes (ambiguous residues) :: 0 of 23 CC Pseudo Genes (frameshifted) :: 4 of 23 CC Pseudo Genes (incomplete) :: 18 of 23 CC Pseudo Genes (internal stop) :: 1 of 23 CC CRISPR Arrays :: 4 CC Genome Coverage :: 171x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 171x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..1837 FT /organism="Rothia sp. HMSC061D12" FT /host="Homo sapiens" FT /strain="HMSC061D12" FT /mol_type="genomic DNA" FT /isolation_source="sputum" FT /db_xref="taxon:1715161" XX CO join(LTQJ01000052.1:1..1837) // ID KV830302; SV 1; linear; genomic DNA; CON; PRO; 452 BP. XX AC KV830302; LTQJ01000000; XX PR Project:PRJNA296289; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Rothia sp. HMSC061D12 genomic scaffold Scaffold4, whole genome shotgun DE sequence. XX KW . XX OS Rothia sp. HMSC061D12 OC Bacteria; Actinobacteria; Micrococcales; Micrococcaceae; Rothia; OC unclassified Rothia (in: Bacteria). XX RN [1] RP 1-452 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (09-FEB-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; e17ffca17b801e95c78304ba5de71b0c. DR ENA; LTQJ01000000; SET. DR ENA; LTQJ00000000; SET. DR BioSample; SAMN04498645. XX CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 03/03/2016 04:31:51 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 1,839 CC CDS (total) :: 1,782 CC Genes (coding) :: 1,759 CC CDS (coding) :: 1,759 CC Genes (RNA) :: 57 CC rRNAs :: 4, 1, 1 (5S, 16S, 23S) CC complete rRNAs :: 4, 1, 1 (5S, 16S, 23S) CC tRNAs :: 48 CC ncRNAs :: 3 CC Pseudo Genes (total) :: 23 CC Pseudo Genes (ambiguous residues) :: 0 of 23 CC Pseudo Genes (frameshifted) :: 4 of 23 CC Pseudo Genes (incomplete) :: 18 of 23 CC Pseudo Genes (internal stop) :: 1 of 23 CC CRISPR Arrays :: 4 CC Genome Coverage :: 171x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 171x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..452 FT /organism="Rothia sp. HMSC061D12" FT /host="Homo sapiens" FT /strain="HMSC061D12" FT /mol_type="genomic DNA" FT /isolation_source="sputum" FT /db_xref="taxon:1715161" XX CO join(LTQJ01000053.1:1..452) // ID KV830303; SV 1; linear; genomic DNA; CON; PRO; 1397 BP. XX AC KV830303; LTQJ01000000; XX PR Project:PRJNA296289; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Rothia sp. HMSC061D12 genomic scaffold Scaffold8, whole genome shotgun DE sequence. XX KW . XX OS Rothia sp. HMSC061D12 OC Bacteria; Actinobacteria; Micrococcales; Micrococcaceae; Rothia; OC unclassified Rothia (in: Bacteria). XX RN [1] RP 1-1397 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (09-FEB-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; a0fb9984a474c73ade2bf0713ff6b4e4. DR ENA; LTQJ01000000; SET. DR ENA; LTQJ00000000; SET. DR BioSample; SAMN04498645. XX CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 03/03/2016 04:31:51 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 1,839 CC CDS (total) :: 1,782 CC Genes (coding) :: 1,759 CC CDS (coding) :: 1,759 CC Genes (RNA) :: 57 CC rRNAs :: 4, 1, 1 (5S, 16S, 23S) CC complete rRNAs :: 4, 1, 1 (5S, 16S, 23S) CC tRNAs :: 48 CC ncRNAs :: 3 CC Pseudo Genes (total) :: 23 CC Pseudo Genes (ambiguous residues) :: 0 of 23 CC Pseudo Genes (frameshifted) :: 4 of 23 CC Pseudo Genes (incomplete) :: 18 of 23 CC Pseudo Genes (internal stop) :: 1 of 23 CC CRISPR Arrays :: 4 CC Genome Coverage :: 171x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 171x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..1397 FT /organism="Rothia sp. HMSC061D12" FT /host="Homo sapiens" FT /strain="HMSC061D12" FT /mol_type="genomic DNA" FT /isolation_source="sputum" FT /db_xref="taxon:1715161" XX CO join(LTQJ01000059.1:1..1397) // ID KV830304; SV 1; linear; genomic DNA; CON; PRO; 2664 BP. XX AC KV830304; LTQJ01000000; XX PR Project:PRJNA296289; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Rothia sp. HMSC061D12 genomic scaffold Scaffold10, whole genome shotgun DE sequence. XX KW . XX OS Rothia sp. HMSC061D12 OC Bacteria; Actinobacteria; Micrococcales; Micrococcaceae; Rothia; OC unclassified Rothia (in: Bacteria). XX RN [1] RP 1-2664 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (09-FEB-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; 08224c3d66d1a45fb07ec6406322ef78. DR ENA; LTQJ01000000; SET. DR ENA; LTQJ00000000; SET. DR BioSample; SAMN04498645. XX CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 03/03/2016 04:31:51 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 1,839 CC CDS (total) :: 1,782 CC Genes (coding) :: 1,759 CC CDS (coding) :: 1,759 CC Genes (RNA) :: 57 CC rRNAs :: 4, 1, 1 (5S, 16S, 23S) CC complete rRNAs :: 4, 1, 1 (5S, 16S, 23S) CC tRNAs :: 48 CC ncRNAs :: 3 CC Pseudo Genes (total) :: 23 CC Pseudo Genes (ambiguous residues) :: 0 of 23 CC Pseudo Genes (frameshifted) :: 4 of 23 CC Pseudo Genes (incomplete) :: 18 of 23 CC Pseudo Genes (internal stop) :: 1 of 23 CC CRISPR Arrays :: 4 CC Genome Coverage :: 171x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 171x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..2664 FT /organism="Rothia sp. HMSC061D12" FT /host="Homo sapiens" FT /strain="HMSC061D12" FT /mol_type="genomic DNA" FT /isolation_source="sputum" FT /db_xref="taxon:1715161" XX CO join(LTQJ01000003.1:1..2664) // ID KV830305; SV 1; linear; genomic DNA; CON; PRO; 1675525 BP. XX AC KV830305; LTQJ01000000; XX PR Project:PRJNA296289; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Rothia sp. HMSC061D12 genomic scaffold Scaffold11, whole genome shotgun DE sequence. XX KW . XX OS Rothia sp. HMSC061D12 OC Bacteria; Actinobacteria; Micrococcales; Micrococcaceae; Rothia; OC unclassified Rothia (in: Bacteria). XX RN [1] RP 1-1675525 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (09-FEB-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; e3bec568d2e9023f5cf30ca9ccad0d9e. DR ENA; LTQJ01000000; SET. DR ENA; LTQJ00000000; SET. DR BioSample; SAMN04498645. XX CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 03/03/2016 04:31:51 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 1,839 CC CDS (total) :: 1,782 CC Genes (coding) :: 1,759 CC CDS (coding) :: 1,759 CC Genes (RNA) :: 57 CC rRNAs :: 4, 1, 1 (5S, 16S, 23S) CC complete rRNAs :: 4, 1, 1 (5S, 16S, 23S) CC tRNAs :: 48 CC ncRNAs :: 3 CC Pseudo Genes (total) :: 23 CC Pseudo Genes (ambiguous residues) :: 0 of 23 CC Pseudo Genes (frameshifted) :: 4 of 23 CC Pseudo Genes (incomplete) :: 18 of 23 CC Pseudo Genes (internal stop) :: 1 of 23 CC CRISPR Arrays :: 4 CC Genome Coverage :: 171x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 171x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..1675525 FT /organism="Rothia sp. HMSC061D12" FT /host="Homo sapiens" FT /strain="HMSC061D12" FT /mol_type="genomic DNA" FT /isolation_source="sputum" FT /db_xref="taxon:1715161" FT assembly_gap 104364..104463 FT /estimated_length=unknown FT /gap_type="within scaffold" FT /linkage_evidence="paired-ends" FT assembly_gap 172353..172452 FT /estimated_length=unknown FT /gap_type="within scaffold" FT /linkage_evidence="paired-ends" FT assembly_gap 204610..204709 FT /estimated_length=unknown FT /gap_type="within scaffold" FT /linkage_evidence="paired-ends" FT assembly_gap 209403..209502 FT /estimated_length=unknown FT /gap_type="within scaffold" FT /linkage_evidence="paired-ends" FT assembly_gap 209739..209838 FT /estimated_length=unknown FT /gap_type="within scaffold" FT /linkage_evidence="paired-ends" FT assembly_gap 210152..210251 FT /estimated_length=unknown FT /gap_type="within scaffold" FT /linkage_evidence="paired-ends" FT assembly_gap 210488..210587 FT /estimated_length=unknown FT /gap_type="within scaffold" FT /linkage_evidence="paired-ends" FT assembly_gap 211773..211872 FT /estimated_length=unknown FT /gap_type="within scaffold" FT /linkage_evidence="paired-ends" FT assembly_gap 212328..212427 FT /estimated_length=unknown FT /gap_type="within scaffold" FT /linkage_evidence="paired-ends" FT assembly_gap 212664..212763 FT /estimated_length=unknown FT /gap_type="within scaffold" FT /linkage_evidence="paired-ends" FT assembly_gap 213002..213101 FT /estimated_length=unknown FT /gap_type="within scaffold" FT /linkage_evidence="paired-ends" FT assembly_gap 213778..213877 FT /estimated_length=unknown FT /gap_type="within scaffold" FT /linkage_evidence="paired-ends" FT assembly_gap 239925..240024 FT /estimated_length=unknown FT /gap_type="within scaffold" FT /linkage_evidence="paired-ends" FT assembly_gap 248072..248171 FT /estimated_length=unknown FT /gap_type="within scaffold" FT /linkage_evidence="paired-ends" FT assembly_gap 263780..263879 FT /estimated_length=unknown FT /gap_type="within scaffold" FT /linkage_evidence="paired-ends" FT assembly_gap 267968..268067 FT /estimated_length=unknown FT /gap_type="within scaffold" FT /linkage_evidence="paired-ends" FT assembly_gap 269847..269946 FT /estimated_length=unknown FT /gap_type="within scaffold" FT /linkage_evidence="paired-ends" FT assembly_gap 305109..305208 FT /estimated_length=unknown FT /gap_type="within scaffold" FT /linkage_evidence="paired-ends" FT assembly_gap 481174..481273 FT /estimated_length=unknown FT /gap_type="within scaffold" FT /linkage_evidence="paired-ends" FT assembly_gap 537845..537944 FT /estimated_length=unknown FT /gap_type="within scaffold" FT /linkage_evidence="paired-ends" FT assembly_gap 539628..539727 FT /estimated_length=unknown FT /gap_type="within scaffold" FT /linkage_evidence="paired-ends" FT assembly_gap 540884..540983 FT /estimated_length=unknown FT /gap_type="within scaffold" FT /linkage_evidence="paired-ends" FT assembly_gap 769456..769555 FT /estimated_length=unknown FT /gap_type="within scaffold" FT /linkage_evidence="paired-ends" FT assembly_gap 795918..796017 FT /estimated_length=unknown FT /gap_type="within scaffold" FT /linkage_evidence="paired-ends" FT assembly_gap 834605..834704 FT /estimated_length=unknown FT /gap_type="within scaffold" FT /linkage_evidence="paired-ends" FT assembly_gap 895254..895353 FT /estimated_length=unknown FT /gap_type="within scaffold" FT /linkage_evidence="paired-ends" FT assembly_gap 900121..900220 FT /estimated_length=unknown FT /gap_type="within scaffold" FT /linkage_evidence="paired-ends" FT assembly_gap 1039224..1039323 FT /estimated_length=unknown FT /gap_type="within scaffold" FT /linkage_evidence="paired-ends" FT assembly_gap 1225396..1225495 FT /estimated_length=unknown FT /gap_type="within scaffold" FT /linkage_evidence="paired-ends" FT assembly_gap 1288391..1288490 FT /estimated_length=unknown FT /gap_type="within scaffold" FT /linkage_evidence="paired-ends" FT assembly_gap 1439318..1439417 FT /estimated_length=unknown FT /gap_type="within scaffold" FT /linkage_evidence="paired-ends" FT assembly_gap 1541625..1541724 FT /estimated_length=unknown FT /gap_type="within scaffold" FT /linkage_evidence="paired-ends" FT assembly_gap 1543453..1543552 FT /estimated_length=unknown FT /gap_type="within scaffold" FT /linkage_evidence="paired-ends" FT assembly_gap 1597738..1597837 FT /estimated_length=unknown FT /gap_type="within scaffold" FT /linkage_evidence="paired-ends" FT assembly_gap 1637744..1637843 FT /estimated_length=unknown FT /gap_type="within scaffold" FT /linkage_evidence="paired-ends" FT assembly_gap 1654767..1654866 FT /estimated_length=unknown FT /gap_type="within scaffold" FT /linkage_evidence="paired-ends" XX CO join(LTQJ01000004.1:1..104363,gap(unk100),LTQJ01000011.1:1..67889, CO gap(unk100),LTQJ01000022.1:1..32157,gap(unk100),LTQJ01000033.1:1..4693, CO gap(unk100),LTQJ01000039.1:1..236,gap(unk100),LTQJ01000040.1:1..313, CO gap(unk100),LTQJ01000005.1:1..236,gap(unk100),LTQJ01000006.1:1..1185, CO gap(unk100),LTQJ01000007.1:1..455,gap(unk100),LTQJ01000008.1:1..236, CO gap(unk100),LTQJ01000009.1:1..238,gap(unk100),LTQJ01000010.1:1..676, CO gap(unk100),LTQJ01000012.1:1..26047,gap(unk100),LTQJ01000013.1:1..8047, CO gap(unk100),LTQJ01000014.1:1..15608,gap(unk100),LTQJ01000015.1:1..4088, CO gap(unk100),LTQJ01000016.1:1..1779,gap(unk100),LTQJ01000017.1:1..35162, CO gap(unk100),LTQJ01000018.1:1..175965,gap(unk100),LTQJ01000019.1:1..56571, CO gap(unk100),LTQJ01000020.1:1..1683,gap(unk100),LTQJ01000021.1:1..1156, CO gap(unk100),LTQJ01000023.1:1..228472,gap(unk100),LTQJ01000024.1:1..26362, CO gap(unk100),LTQJ01000025.1:1..38587,gap(unk100),LTQJ01000026.1:1..60549, CO gap(unk100),LTQJ01000027.1:1..4767,gap(unk100),LTQJ01000028.1:1..139003, CO gap(unk100),LTQJ01000029.1:1..186072,gap(unk100),LTQJ01000030.1:1..62895, CO gap(unk100),LTQJ01000031.1:1..150827,gap(unk100),LTQJ01000032.1:1..102207, CO gap(unk100),LTQJ01000034.1:1..1728,gap(unk100),LTQJ01000035.1:1..54185, CO gap(unk100),LTQJ01000036.1:1..39906,gap(unk100),LTQJ01000037.1:1..16923, CO gap(unk100),LTQJ01000038.1:1..20659) // ID KV830306; SV 1; linear; genomic DNA; CON; PRO; 205 BP. XX AC KV830306; LTQJ01000000; XX PR Project:PRJNA296289; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Rothia sp. HMSC061D12 genomic scaffold Scaffold48, whole genome shotgun DE sequence. XX KW . XX OS Rothia sp. HMSC061D12 OC Bacteria; Actinobacteria; Micrococcales; Micrococcaceae; Rothia; OC unclassified Rothia (in: Bacteria). XX RN [1] RP 1-205 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (09-FEB-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; 02128399e433c1f3ad0cb0a1a6d57891. DR ENA; LTQJ01000000; SET. DR ENA; LTQJ00000000; SET. DR BioSample; SAMN04498645. XX CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 03/03/2016 04:31:51 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 1,839 CC CDS (total) :: 1,782 CC Genes (coding) :: 1,759 CC CDS (coding) :: 1,759 CC Genes (RNA) :: 57 CC rRNAs :: 4, 1, 1 (5S, 16S, 23S) CC complete rRNAs :: 4, 1, 1 (5S, 16S, 23S) CC tRNAs :: 48 CC ncRNAs :: 3 CC Pseudo Genes (total) :: 23 CC Pseudo Genes (ambiguous residues) :: 0 of 23 CC Pseudo Genes (frameshifted) :: 4 of 23 CC Pseudo Genes (incomplete) :: 18 of 23 CC Pseudo Genes (internal stop) :: 1 of 23 CC CRISPR Arrays :: 4 CC Genome Coverage :: 171x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 171x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..205 FT /organism="Rothia sp. HMSC061D12" FT /host="Homo sapiens" FT /strain="HMSC061D12" FT /mol_type="genomic DNA" FT /isolation_source="sputum" FT /db_xref="taxon:1715161" XX CO join(LTQJ01000054.1:1..205) // ID KV830307; SV 1; linear; genomic DNA; CON; PRO; 310851 BP. XX AC KV830307; LTQJ01000000; XX PR Project:PRJNA296289; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Rothia sp. HMSC061D12 genomic scaffold Scaffold79, whole genome shotgun DE sequence. XX KW . XX OS Rothia sp. HMSC061D12 OC Bacteria; Actinobacteria; Micrococcales; Micrococcaceae; Rothia; OC unclassified Rothia (in: Bacteria). XX RN [1] RP 1-310851 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (09-FEB-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; db2f2d15a05c38a20bb864c29e35b8c1. DR ENA; LTQJ01000000; SET. DR ENA; LTQJ00000000; SET. DR BioSample; SAMN04498645. XX CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 03/03/2016 04:31:51 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 1,839 CC CDS (total) :: 1,782 CC Genes (coding) :: 1,759 CC CDS (coding) :: 1,759 CC Genes (RNA) :: 57 CC rRNAs :: 4, 1, 1 (5S, 16S, 23S) CC complete rRNAs :: 4, 1, 1 (5S, 16S, 23S) CC tRNAs :: 48 CC ncRNAs :: 3 CC Pseudo Genes (total) :: 23 CC Pseudo Genes (ambiguous residues) :: 0 of 23 CC Pseudo Genes (frameshifted) :: 4 of 23 CC Pseudo Genes (incomplete) :: 18 of 23 CC Pseudo Genes (internal stop) :: 1 of 23 CC CRISPR Arrays :: 4 CC Genome Coverage :: 171x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 171x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..310851 FT /organism="Rothia sp. HMSC061D12" FT /host="Homo sapiens" FT /strain="HMSC061D12" FT /mol_type="genomic DNA" FT /isolation_source="sputum" FT /db_xref="taxon:1715161" FT assembly_gap 46830..46929 FT /estimated_length=unknown FT /gap_type="within scaffold" FT /linkage_evidence="paired-ends" FT assembly_gap 74965..75064 FT /estimated_length=unknown FT /gap_type="within scaffold" FT /linkage_evidence="paired-ends" FT assembly_gap 119530..119629 FT /estimated_length=unknown FT /gap_type="within scaffold" FT /linkage_evidence="paired-ends" XX CO join(LTQJ01000055.1:1..46829,gap(unk100),LTQJ01000056.1:1..28035, CO gap(unk100),LTQJ01000057.1:1..44465,gap(unk100),LTQJ01000058.1:1..191222) // ID KV830308; SV 1; linear; genomic DNA; CON; PRO; 215 BP. XX AC KV830308; LTQJ01000000; XX PR Project:PRJNA296289; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Rothia sp. HMSC061D12 genomic scaffold Scaffold80, whole genome shotgun DE sequence. XX KW . XX OS Rothia sp. HMSC061D12 OC Bacteria; Actinobacteria; Micrococcales; Micrococcaceae; Rothia; OC unclassified Rothia (in: Bacteria). XX RN [1] RP 1-215 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (09-FEB-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; 27246904f0241ecaf32e9025600922c7. DR ENA; LTQJ01000000; SET. DR ENA; LTQJ00000000; SET. DR BioSample; SAMN04498645. XX CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 03/03/2016 04:31:51 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 1,839 CC CDS (total) :: 1,782 CC Genes (coding) :: 1,759 CC CDS (coding) :: 1,759 CC Genes (RNA) :: 57 CC rRNAs :: 4, 1, 1 (5S, 16S, 23S) CC complete rRNAs :: 4, 1, 1 (5S, 16S, 23S) CC tRNAs :: 48 CC ncRNAs :: 3 CC Pseudo Genes (total) :: 23 CC Pseudo Genes (ambiguous residues) :: 0 of 23 CC Pseudo Genes (frameshifted) :: 4 of 23 CC Pseudo Genes (incomplete) :: 18 of 23 CC Pseudo Genes (internal stop) :: 1 of 23 CC CRISPR Arrays :: 4 CC Genome Coverage :: 171x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 171x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..215 FT /organism="Rothia sp. HMSC061D12" FT /host="Homo sapiens" FT /strain="HMSC061D12" FT /mol_type="genomic DNA" FT /isolation_source="sputum" FT /db_xref="taxon:1715161" XX CO join(LTQJ01000060.1:1..215) // ID KV830309; SV 1; linear; genomic DNA; CON; PRO; 33397 BP. XX AC KV830309; LTQJ01000000; XX PR Project:PRJNA296289; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Rothia sp. HMSC061D12 genomic scaffold Scaffold120, whole genome shotgun DE sequence. XX KW . XX OS Rothia sp. HMSC061D12 OC Bacteria; Actinobacteria; Micrococcales; Micrococcaceae; Rothia; OC unclassified Rothia (in: Bacteria). XX RN [1] RP 1-33397 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (09-FEB-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; a7af79abe308fee4c2b3590f3e507b6e. DR ENA; LTQJ01000000; SET. DR ENA; LTQJ00000000; SET. DR BioSample; SAMN04498645. XX CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 03/03/2016 04:31:51 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 1,839 CC CDS (total) :: 1,782 CC Genes (coding) :: 1,759 CC CDS (coding) :: 1,759 CC Genes (RNA) :: 57 CC rRNAs :: 4, 1, 1 (5S, 16S, 23S) CC complete rRNAs :: 4, 1, 1 (5S, 16S, 23S) CC tRNAs :: 48 CC ncRNAs :: 3 CC Pseudo Genes (total) :: 23 CC Pseudo Genes (ambiguous residues) :: 0 of 23 CC Pseudo Genes (frameshifted) :: 4 of 23 CC Pseudo Genes (incomplete) :: 18 of 23 CC Pseudo Genes (internal stop) :: 1 of 23 CC CRISPR Arrays :: 4 CC Genome Coverage :: 171x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 171x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..33397 FT /organism="Rothia sp. HMSC061D12" FT /host="Homo sapiens" FT /strain="HMSC061D12" FT /mol_type="genomic DNA" FT /isolation_source="sputum" FT /db_xref="taxon:1715161" FT assembly_gap 17933..18032 FT /estimated_length=unknown FT /gap_type="within scaffold" FT /linkage_evidence="paired-ends" XX CO join(LTQJ01000041.1:1..17932,gap(unk100),LTQJ01000042.1:1..15365) // ID KV830310; SV 1; linear; genomic DNA; CON; PRO; 97079 BP. XX AC KV830310; LTQJ01000000; XX PR Project:PRJNA296289; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Rothia sp. HMSC061D12 genomic scaffold Scaffold150, whole genome shotgun DE sequence. XX KW . XX OS Rothia sp. HMSC061D12 OC Bacteria; Actinobacteria; Micrococcales; Micrococcaceae; Rothia; OC unclassified Rothia (in: Bacteria). XX RN [1] RP 1-97079 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (09-FEB-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; 2eed70a71345d247e06e43912448842e. DR ENA; LTQJ01000000; SET. DR ENA; LTQJ00000000; SET. DR BioSample; SAMN04498645. XX CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 03/03/2016 04:31:51 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 1,839 CC CDS (total) :: 1,782 CC Genes (coding) :: 1,759 CC CDS (coding) :: 1,759 CC Genes (RNA) :: 57 CC rRNAs :: 4, 1, 1 (5S, 16S, 23S) CC complete rRNAs :: 4, 1, 1 (5S, 16S, 23S) CC tRNAs :: 48 CC ncRNAs :: 3 CC Pseudo Genes (total) :: 23 CC Pseudo Genes (ambiguous residues) :: 0 of 23 CC Pseudo Genes (frameshifted) :: 4 of 23 CC Pseudo Genes (incomplete) :: 18 of 23 CC Pseudo Genes (internal stop) :: 1 of 23 CC CRISPR Arrays :: 4 CC Genome Coverage :: 171x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 171x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..97079 FT /organism="Rothia sp. HMSC061D12" FT /host="Homo sapiens" FT /strain="HMSC061D12" FT /mol_type="genomic DNA" FT /isolation_source="sputum" FT /db_xref="taxon:1715161" FT assembly_gap 30881..30980 FT /estimated_length=unknown FT /gap_type="within scaffold" FT /linkage_evidence="paired-ends" FT assembly_gap 33185..33284 FT /estimated_length=unknown FT /gap_type="within scaffold" FT /linkage_evidence="paired-ends" FT assembly_gap 53868..53967 FT /estimated_length=unknown FT /gap_type="within scaffold" FT /linkage_evidence="paired-ends" FT assembly_gap 61118..61217 FT /estimated_length=unknown FT /gap_type="within scaffold" FT /linkage_evidence="paired-ends" XX CO join(LTQJ01000043.1:1..30880,gap(unk100),LTQJ01000044.1:1..2204, CO gap(unk100),LTQJ01000045.1:1..20583,gap(unk100),LTQJ01000046.1:1..7150, CO gap(unk100),LTQJ01000047.1:1..35862) // ID KV830311; SV 1; linear; genomic DNA; CON; PRO; 206262 BP. XX AC KV830311; LTQJ01000000; XX PR Project:PRJNA296289; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Rothia sp. HMSC061D12 genomic scaffold Scaffold197, whole genome shotgun DE sequence. XX KW . XX OS Rothia sp. HMSC061D12 OC Bacteria; Actinobacteria; Micrococcales; Micrococcaceae; Rothia; OC unclassified Rothia (in: Bacteria). XX RN [1] RP 1-206262 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (09-FEB-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; ad3c4cef96af48d65e6200a32bc39d67. DR ENA; LTQJ01000000; SET. DR ENA; LTQJ00000000; SET. DR BioSample; SAMN04498645. XX CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 03/03/2016 04:31:51 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 1,839 CC CDS (total) :: 1,782 CC Genes (coding) :: 1,759 CC CDS (coding) :: 1,759 CC Genes (RNA) :: 57 CC rRNAs :: 4, 1, 1 (5S, 16S, 23S) CC complete rRNAs :: 4, 1, 1 (5S, 16S, 23S) CC tRNAs :: 48 CC ncRNAs :: 3 CC Pseudo Genes (total) :: 23 CC Pseudo Genes (ambiguous residues) :: 0 of 23 CC Pseudo Genes (frameshifted) :: 4 of 23 CC Pseudo Genes (incomplete) :: 18 of 23 CC Pseudo Genes (internal stop) :: 1 of 23 CC CRISPR Arrays :: 4 CC Genome Coverage :: 171x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 171x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..206262 FT /organism="Rothia sp. HMSC061D12" FT /host="Homo sapiens" FT /strain="HMSC061D12" FT /mol_type="genomic DNA" FT /isolation_source="sputum" FT /db_xref="taxon:1715161" FT assembly_gap 94866..94965 FT /estimated_length=unknown FT /gap_type="within scaffold" FT /linkage_evidence="paired-ends" FT assembly_gap 137904..138003 FT /estimated_length=unknown FT /gap_type="within scaffold" FT /linkage_evidence="paired-ends" FT assembly_gap 195838..195937 FT /estimated_length=unknown FT /gap_type="within scaffold" FT /linkage_evidence="paired-ends" XX CO join(LTQJ01000048.1:1..94865,gap(unk100),LTQJ01000049.1:1..42938, CO gap(unk100),LTQJ01000050.1:1..57834,gap(unk100),LTQJ01000051.1:1..10325) // ID KV830312; SV 1; linear; genomic DNA; CON; PRO; 35105 BP. XX AC KV830312; LWQD01000000; XX PR Project:PRJNA296234; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Staphylococcus sp. HMSC061F10 genomic scaffold Scaffold1026, whole genome DE shotgun sequence. XX KW . XX OS Staphylococcus sp. HMSC061F10 OC Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcaceae; OC Staphylococcus. XX RN [1] RP 1-35105 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (25-MAR-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; 39c90b699b575598060a14505d9a53ec. DR ENA; LWQD01000000; SET. DR ENA; LWQD00000000; SET. DR BioSample; SAMN04498612. XX CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 04/22/2016 17:47:28 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 2,375 CC CDS (total) :: 2,333 CC Genes (coding) :: 2,241 CC CDS (coding) :: 2,241 CC Genes (RNA) :: 42 CC rRNAs :: 2, 2 (16S, 23S) CC partial rRNAs :: 2, 2 (16S, 23S) CC tRNAs :: 34 CC ncRNAs :: 4 CC Pseudo Genes (total) :: 92 CC Pseudo Genes (ambiguous residues) :: 0 of 92 CC Pseudo Genes (frameshifted) :: 17 of 92 CC Pseudo Genes (incomplete) :: 71 of 92 CC Pseudo Genes (internal stop) :: 12 of 92 CC Pseudo Genes (multiple problems) :: 6 of 92 CC Genome Coverage :: 164x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 164x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..35105 FT /organism="Staphylococcus sp. HMSC061F10" FT /host="Homo sapiens" FT /strain="HMSC061F10" FT /mol_type="genomic DNA" FT /isolation_source="vaginal/rectal" FT /db_xref="taxon:1715106" FT assembly_gap 9276..9375 FT /estimated_length=unknown FT /gap_type="within scaffold" FT /linkage_evidence="paired-ends" XX CO join(LWQD01000001.1:1..9275,gap(unk100),LWQD01000002.1:1..25730) // ID KV830313; SV 1; linear; genomic DNA; CON; PRO; 454 BP. XX AC KV830313; LWQD01000000; XX PR Project:PRJNA296234; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Staphylococcus sp. HMSC061F10 genomic scaffold Scaffold1036, whole genome DE shotgun sequence. XX KW . XX OS Staphylococcus sp. HMSC061F10 OC Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcaceae; OC Staphylococcus. XX RN [1] RP 1-454 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (25-MAR-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; d1fe664ced3f811d88ffed86a0f7a734. DR ENA; LWQD01000000; SET. DR ENA; LWQD00000000; SET. DR BioSample; SAMN04498612. XX CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 04/22/2016 17:47:28 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 2,375 CC CDS (total) :: 2,333 CC Genes (coding) :: 2,241 CC CDS (coding) :: 2,241 CC Genes (RNA) :: 42 CC rRNAs :: 2, 2 (16S, 23S) CC partial rRNAs :: 2, 2 (16S, 23S) CC tRNAs :: 34 CC ncRNAs :: 4 CC Pseudo Genes (total) :: 92 CC Pseudo Genes (ambiguous residues) :: 0 of 92 CC Pseudo Genes (frameshifted) :: 17 of 92 CC Pseudo Genes (incomplete) :: 71 of 92 CC Pseudo Genes (internal stop) :: 12 of 92 CC Pseudo Genes (multiple problems) :: 6 of 92 CC Genome Coverage :: 164x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 164x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..454 FT /organism="Staphylococcus sp. HMSC061F10" FT /host="Homo sapiens" FT /strain="HMSC061F10" FT /mol_type="genomic DNA" FT /isolation_source="vaginal/rectal" FT /db_xref="taxon:1715106" XX CO join(LWQD01000003.1:1..454) // ID KV830314; SV 1; linear; genomic DNA; CON; PRO; 905 BP. XX AC KV830314; LWQD01000000; XX PR Project:PRJNA296234; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Staphylococcus sp. HMSC061F10 genomic scaffold Scaffold1052, whole genome DE shotgun sequence. XX KW . XX OS Staphylococcus sp. HMSC061F10 OC Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcaceae; OC Staphylococcus. XX RN [1] RP 1-905 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (25-MAR-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; d09b9b5c9b893ee05b418c287f14e613. DR ENA; LWQD01000000; SET. DR ENA; LWQD00000000; SET. DR BioSample; SAMN04498612. XX CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 04/22/2016 17:47:28 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 2,375 CC CDS (total) :: 2,333 CC Genes (coding) :: 2,241 CC CDS (coding) :: 2,241 CC Genes (RNA) :: 42 CC rRNAs :: 2, 2 (16S, 23S) CC partial rRNAs :: 2, 2 (16S, 23S) CC tRNAs :: 34 CC ncRNAs :: 4 CC Pseudo Genes (total) :: 92 CC Pseudo Genes (ambiguous residues) :: 0 of 92 CC Pseudo Genes (frameshifted) :: 17 of 92 CC Pseudo Genes (incomplete) :: 71 of 92 CC Pseudo Genes (internal stop) :: 12 of 92 CC Pseudo Genes (multiple problems) :: 6 of 92 CC Genome Coverage :: 164x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 164x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..905 FT /organism="Staphylococcus sp. HMSC061F10" FT /host="Homo sapiens" FT /strain="HMSC061F10" FT /mol_type="genomic DNA" FT /isolation_source="vaginal/rectal" FT /db_xref="taxon:1715106" XX CO join(LWQD01000004.1:1..905) // ID KV830315; SV 1; linear; genomic DNA; CON; PRO; 10437 BP. XX AC KV830315; LWQD01000000; XX PR Project:PRJNA296234; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Staphylococcus sp. HMSC061F10 genomic scaffold Scaffold1059, whole genome DE shotgun sequence. XX KW . XX OS Staphylococcus sp. HMSC061F10 OC Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcaceae; OC Staphylococcus. XX RN [1] RP 1-10437 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (25-MAR-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; 9afd14f6f5b520ccc2e9ac400081316e. DR ENA; LWQD01000000; SET. DR ENA; LWQD00000000; SET. DR BioSample; SAMN04498612. XX CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 04/22/2016 17:47:28 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 2,375 CC CDS (total) :: 2,333 CC Genes (coding) :: 2,241 CC CDS (coding) :: 2,241 CC Genes (RNA) :: 42 CC rRNAs :: 2, 2 (16S, 23S) CC partial rRNAs :: 2, 2 (16S, 23S) CC tRNAs :: 34 CC ncRNAs :: 4 CC Pseudo Genes (total) :: 92 CC Pseudo Genes (ambiguous residues) :: 0 of 92 CC Pseudo Genes (frameshifted) :: 17 of 92 CC Pseudo Genes (incomplete) :: 71 of 92 CC Pseudo Genes (internal stop) :: 12 of 92 CC Pseudo Genes (multiple problems) :: 6 of 92 CC Genome Coverage :: 164x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 164x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..10437 FT /organism="Staphylococcus sp. HMSC061F10" FT /host="Homo sapiens" FT /strain="HMSC061F10" FT /mol_type="genomic DNA" FT /isolation_source="vaginal/rectal" FT /db_xref="taxon:1715106" XX CO join(LWQD01000005.1:1..10437) // ID KV830316; SV 1; linear; genomic DNA; CON; PRO; 223 BP. XX AC KV830316; LWQD01000000; XX PR Project:PRJNA296234; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Staphylococcus sp. HMSC061F10 genomic scaffold Scaffold1077, whole genome DE shotgun sequence. XX KW . XX OS Staphylococcus sp. HMSC061F10 OC Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcaceae; OC Staphylococcus. XX RN [1] RP 1-223 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (25-MAR-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; f3f62a0ddd5189480f15b1ef475121fc. DR ENA; LWQD01000000; SET. DR ENA; LWQD00000000; SET. DR BioSample; SAMN04498612. XX CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 04/22/2016 17:47:28 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 2,375 CC CDS (total) :: 2,333 CC Genes (coding) :: 2,241 CC CDS (coding) :: 2,241 CC Genes (RNA) :: 42 CC rRNAs :: 2, 2 (16S, 23S) CC partial rRNAs :: 2, 2 (16S, 23S) CC tRNAs :: 34 CC ncRNAs :: 4 CC Pseudo Genes (total) :: 92 CC Pseudo Genes (ambiguous residues) :: 0 of 92 CC Pseudo Genes (frameshifted) :: 17 of 92 CC Pseudo Genes (incomplete) :: 71 of 92 CC Pseudo Genes (internal stop) :: 12 of 92 CC Pseudo Genes (multiple problems) :: 6 of 92 CC Genome Coverage :: 164x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 164x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..223 FT /organism="Staphylococcus sp. HMSC061F10" FT /host="Homo sapiens" FT /strain="HMSC061F10" FT /mol_type="genomic DNA" FT /isolation_source="vaginal/rectal" FT /db_xref="taxon:1715106" XX CO join(LWQD01000006.1:1..223) // ID KV830317; SV 1; linear; genomic DNA; CON; PRO; 21557 BP. XX AC KV830317; LWQD01000000; XX PR Project:PRJNA296234; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Staphylococcus sp. HMSC061F10 genomic scaffold Scaffold109, whole genome DE shotgun sequence. XX KW . XX OS Staphylococcus sp. HMSC061F10 OC Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcaceae; OC Staphylococcus. XX RN [1] RP 1-21557 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (25-MAR-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; d71509681a2ab9aa44a018b8b042759f. DR ENA; LWQD01000000; SET. DR ENA; LWQD00000000; SET. DR BioSample; SAMN04498612. XX CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 04/22/2016 17:47:28 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 2,375 CC CDS (total) :: 2,333 CC Genes (coding) :: 2,241 CC CDS (coding) :: 2,241 CC Genes (RNA) :: 42 CC rRNAs :: 2, 2 (16S, 23S) CC partial rRNAs :: 2, 2 (16S, 23S) CC tRNAs :: 34 CC ncRNAs :: 4 CC Pseudo Genes (total) :: 92 CC Pseudo Genes (ambiguous residues) :: 0 of 92 CC Pseudo Genes (frameshifted) :: 17 of 92 CC Pseudo Genes (incomplete) :: 71 of 92 CC Pseudo Genes (internal stop) :: 12 of 92 CC Pseudo Genes (multiple problems) :: 6 of 92 CC Genome Coverage :: 164x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 164x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..21557 FT /organism="Staphylococcus sp. HMSC061F10" FT /host="Homo sapiens" FT /strain="HMSC061F10" FT /mol_type="genomic DNA" FT /isolation_source="vaginal/rectal" FT /db_xref="taxon:1715106" XX CO join(LWQD01000007.1:1..21557) // ID KV830318; SV 1; linear; genomic DNA; CON; PRO; 227 BP. XX AC KV830318; LWQD01000000; XX PR Project:PRJNA296234; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Staphylococcus sp. HMSC061F10 genomic scaffold Scaffold1116, whole genome DE shotgun sequence. XX KW . XX OS Staphylococcus sp. HMSC061F10 OC Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcaceae; OC Staphylococcus. XX RN [1] RP 1-227 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (25-MAR-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; 2a18c01c987217180fa604a87e7120c0. DR ENA; LWQD01000000; SET. DR ENA; LWQD00000000; SET. DR BioSample; SAMN04498612. XX CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 04/22/2016 17:47:28 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 2,375 CC CDS (total) :: 2,333 CC Genes (coding) :: 2,241 CC CDS (coding) :: 2,241 CC Genes (RNA) :: 42 CC rRNAs :: 2, 2 (16S, 23S) CC partial rRNAs :: 2, 2 (16S, 23S) CC tRNAs :: 34 CC ncRNAs :: 4 CC Pseudo Genes (total) :: 92 CC Pseudo Genes (ambiguous residues) :: 0 of 92 CC Pseudo Genes (frameshifted) :: 17 of 92 CC Pseudo Genes (incomplete) :: 71 of 92 CC Pseudo Genes (internal stop) :: 12 of 92 CC Pseudo Genes (multiple problems) :: 6 of 92 CC Genome Coverage :: 164x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 164x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..227 FT /organism="Staphylococcus sp. HMSC061F10" FT /host="Homo sapiens" FT /strain="HMSC061F10" FT /mol_type="genomic DNA" FT /isolation_source="vaginal/rectal" FT /db_xref="taxon:1715106" XX CO join(LWQD01000008.1:1..227) // ID KV830319; SV 1; linear; genomic DNA; CON; PRO; 427 BP. XX AC KV830319; LWQD01000000; XX PR Project:PRJNA296234; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Staphylococcus sp. HMSC061F10 genomic scaffold Scaffold1135, whole genome DE shotgun sequence. XX KW . XX OS Staphylococcus sp. HMSC061F10 OC Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcaceae; OC Staphylococcus. XX RN [1] RP 1-427 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (25-MAR-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; c0abe2fa95effea13b88338753e6bb8e. DR ENA; LWQD01000000; SET. DR ENA; LWQD00000000; SET. DR BioSample; SAMN04498612. XX CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 04/22/2016 17:47:28 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 2,375 CC CDS (total) :: 2,333 CC Genes (coding) :: 2,241 CC CDS (coding) :: 2,241 CC Genes (RNA) :: 42 CC rRNAs :: 2, 2 (16S, 23S) CC partial rRNAs :: 2, 2 (16S, 23S) CC tRNAs :: 34 CC ncRNAs :: 4 CC Pseudo Genes (total) :: 92 CC Pseudo Genes (ambiguous residues) :: 0 of 92 CC Pseudo Genes (frameshifted) :: 17 of 92 CC Pseudo Genes (incomplete) :: 71 of 92 CC Pseudo Genes (internal stop) :: 12 of 92 CC Pseudo Genes (multiple problems) :: 6 of 92 CC Genome Coverage :: 164x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 164x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..427 FT /organism="Staphylococcus sp. HMSC061F10" FT /host="Homo sapiens" FT /strain="HMSC061F10" FT /mol_type="genomic DNA" FT /isolation_source="vaginal/rectal" FT /db_xref="taxon:1715106" XX CO join(LWQD01000009.1:1..427) // ID KV830320; SV 1; linear; genomic DNA; CON; PRO; 3141 BP. XX AC KV830320; LWQD01000000; XX PR Project:PRJNA296234; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Staphylococcus sp. HMSC061F10 genomic scaffold Scaffold114, whole genome DE shotgun sequence. XX KW . XX OS Staphylococcus sp. HMSC061F10 OC Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcaceae; OC Staphylococcus. XX RN [1] RP 1-3141 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (25-MAR-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; c587186fed6ecd4dd81d04948fed4179. DR ENA; LWQD01000000; SET. DR ENA; LWQD00000000; SET. DR BioSample; SAMN04498612. XX CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 04/22/2016 17:47:28 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 2,375 CC CDS (total) :: 2,333 CC Genes (coding) :: 2,241 CC CDS (coding) :: 2,241 CC Genes (RNA) :: 42 CC rRNAs :: 2, 2 (16S, 23S) CC partial rRNAs :: 2, 2 (16S, 23S) CC tRNAs :: 34 CC ncRNAs :: 4 CC Pseudo Genes (total) :: 92 CC Pseudo Genes (ambiguous residues) :: 0 of 92 CC Pseudo Genes (frameshifted) :: 17 of 92 CC Pseudo Genes (incomplete) :: 71 of 92 CC Pseudo Genes (internal stop) :: 12 of 92 CC Pseudo Genes (multiple problems) :: 6 of 92 CC Genome Coverage :: 164x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 164x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..3141 FT /organism="Staphylococcus sp. HMSC061F10" FT /host="Homo sapiens" FT /strain="HMSC061F10" FT /mol_type="genomic DNA" FT /isolation_source="vaginal/rectal" FT /db_xref="taxon:1715106" XX CO join(LWQD01000010.1:1..3141) // ID KV830321; SV 1; linear; genomic DNA; CON; PRO; 226 BP. XX AC KV830321; LWQD01000000; XX PR Project:PRJNA296234; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Staphylococcus sp. HMSC061F10 genomic scaffold Scaffold1165, whole genome DE shotgun sequence. XX KW . XX OS Staphylococcus sp. HMSC061F10 OC Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcaceae; OC Staphylococcus. XX RN [1] RP 1-226 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (25-MAR-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; ace8439f8ce02f9bc228dbcae04f7ba4. DR ENA; LWQD01000000; SET. DR ENA; LWQD00000000; SET. DR BioSample; SAMN04498612. XX CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 04/22/2016 17:47:28 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 2,375 CC CDS (total) :: 2,333 CC Genes (coding) :: 2,241 CC CDS (coding) :: 2,241 CC Genes (RNA) :: 42 CC rRNAs :: 2, 2 (16S, 23S) CC partial rRNAs :: 2, 2 (16S, 23S) CC tRNAs :: 34 CC ncRNAs :: 4 CC Pseudo Genes (total) :: 92 CC Pseudo Genes (ambiguous residues) :: 0 of 92 CC Pseudo Genes (frameshifted) :: 17 of 92 CC Pseudo Genes (incomplete) :: 71 of 92 CC Pseudo Genes (internal stop) :: 12 of 92 CC Pseudo Genes (multiple problems) :: 6 of 92 CC Genome Coverage :: 164x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 164x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..226 FT /organism="Staphylococcus sp. HMSC061F10" FT /host="Homo sapiens" FT /strain="HMSC061F10" FT /mol_type="genomic DNA" FT /isolation_source="vaginal/rectal" FT /db_xref="taxon:1715106" XX CO join(LWQD01000011.1:1..226) // ID KV830322; SV 1; linear; genomic DNA; CON; PRO; 38194 BP. XX AC KV830322; LWQD01000000; XX PR Project:PRJNA296234; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Staphylococcus sp. HMSC061F10 genomic scaffold Scaffold118, whole genome DE shotgun sequence. XX KW . XX OS Staphylococcus sp. HMSC061F10 OC Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcaceae; OC Staphylococcus. XX RN [1] RP 1-38194 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (25-MAR-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; dc18ad6cc193684a4cbbd01c3d6de1c0. DR ENA; LWQD01000000; SET. DR ENA; LWQD00000000; SET. DR BioSample; SAMN04498612. XX CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 04/22/2016 17:47:28 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 2,375 CC CDS (total) :: 2,333 CC Genes (coding) :: 2,241 CC CDS (coding) :: 2,241 CC Genes (RNA) :: 42 CC rRNAs :: 2, 2 (16S, 23S) CC partial rRNAs :: 2, 2 (16S, 23S) CC tRNAs :: 34 CC ncRNAs :: 4 CC Pseudo Genes (total) :: 92 CC Pseudo Genes (ambiguous residues) :: 0 of 92 CC Pseudo Genes (frameshifted) :: 17 of 92 CC Pseudo Genes (incomplete) :: 71 of 92 CC Pseudo Genes (internal stop) :: 12 of 92 CC Pseudo Genes (multiple problems) :: 6 of 92 CC Genome Coverage :: 164x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 164x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..38194 FT /organism="Staphylococcus sp. HMSC061F10" FT /host="Homo sapiens" FT /strain="HMSC061F10" FT /mol_type="genomic DNA" FT /isolation_source="vaginal/rectal" FT /db_xref="taxon:1715106" XX CO join(LWQD01000012.1:1..38194) // ID KV830323; SV 1; linear; genomic DNA; CON; PRO; 1921 BP. XX AC KV830323; LWQD01000000; XX PR Project:PRJNA296234; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Staphylococcus sp. HMSC061F10 genomic scaffold Scaffold1189, whole genome DE shotgun sequence. XX KW . XX OS Staphylococcus sp. HMSC061F10 OC Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcaceae; OC Staphylococcus. XX RN [1] RP 1-1921 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (25-MAR-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; 52badbd7d3445c21a602cfc2607e8563. DR ENA; LWQD01000000; SET. DR ENA; LWQD00000000; SET. DR BioSample; SAMN04498612. XX CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 04/22/2016 17:47:28 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 2,375 CC CDS (total) :: 2,333 CC Genes (coding) :: 2,241 CC CDS (coding) :: 2,241 CC Genes (RNA) :: 42 CC rRNAs :: 2, 2 (16S, 23S) CC partial rRNAs :: 2, 2 (16S, 23S) CC tRNAs :: 34 CC ncRNAs :: 4 CC Pseudo Genes (total) :: 92 CC Pseudo Genes (ambiguous residues) :: 0 of 92 CC Pseudo Genes (frameshifted) :: 17 of 92 CC Pseudo Genes (incomplete) :: 71 of 92 CC Pseudo Genes (internal stop) :: 12 of 92 CC Pseudo Genes (multiple problems) :: 6 of 92 CC Genome Coverage :: 164x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 164x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..1921 FT /organism="Staphylococcus sp. HMSC061F10" FT /host="Homo sapiens" FT /strain="HMSC061F10" FT /mol_type="genomic DNA" FT /isolation_source="vaginal/rectal" FT /db_xref="taxon:1715106" XX CO join(LWQD01000013.1:1..1921) // ID KV830324; SV 1; linear; genomic DNA; CON; PRO; 93432 BP. XX AC KV830324; LWQD01000000; XX PR Project:PRJNA296234; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Staphylococcus sp. HMSC061F10 genomic scaffold Scaffold119, whole genome DE shotgun sequence. XX KW . XX OS Staphylococcus sp. HMSC061F10 OC Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcaceae; OC Staphylococcus. XX RN [1] RP 1-93432 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (25-MAR-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; 85de897bfde3e4c5d29155d44ea71e2e. DR ENA; LWQD01000000; SET. DR ENA; LWQD00000000; SET. DR BioSample; SAMN04498612. XX CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 04/22/2016 17:47:28 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 2,375 CC CDS (total) :: 2,333 CC Genes (coding) :: 2,241 CC CDS (coding) :: 2,241 CC Genes (RNA) :: 42 CC rRNAs :: 2, 2 (16S, 23S) CC partial rRNAs :: 2, 2 (16S, 23S) CC tRNAs :: 34 CC ncRNAs :: 4 CC Pseudo Genes (total) :: 92 CC Pseudo Genes (ambiguous residues) :: 0 of 92 CC Pseudo Genes (frameshifted) :: 17 of 92 CC Pseudo Genes (incomplete) :: 71 of 92 CC Pseudo Genes (internal stop) :: 12 of 92 CC Pseudo Genes (multiple problems) :: 6 of 92 CC Genome Coverage :: 164x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 164x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..93432 FT /organism="Staphylococcus sp. HMSC061F10" FT /host="Homo sapiens" FT /strain="HMSC061F10" FT /mol_type="genomic DNA" FT /isolation_source="vaginal/rectal" FT /db_xref="taxon:1715106" FT assembly_gap 26420..26519 FT /estimated_length=unknown FT /gap_type="within scaffold" FT /linkage_evidence="paired-ends" XX CO join(LWQD01000014.1:1..26419,gap(unk100),LWQD01000015.1:1..66913) // ID KV830325; SV 1; linear; genomic DNA; CON; PRO; 388 BP. XX AC KV830325; LWQD01000000; XX PR Project:PRJNA296234; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Staphylococcus sp. HMSC061F10 genomic scaffold Scaffold120, whole genome DE shotgun sequence. XX KW . XX OS Staphylococcus sp. HMSC061F10 OC Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcaceae; OC Staphylococcus. XX RN [1] RP 1-388 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (25-MAR-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; 902dfb2c0651da3e4324533a6f6b7462. DR ENA; LWQD01000000; SET. DR ENA; LWQD00000000; SET. DR BioSample; SAMN04498612. XX CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 04/22/2016 17:47:28 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 2,375 CC CDS (total) :: 2,333 CC Genes (coding) :: 2,241 CC CDS (coding) :: 2,241 CC Genes (RNA) :: 42 CC rRNAs :: 2, 2 (16S, 23S) CC partial rRNAs :: 2, 2 (16S, 23S) CC tRNAs :: 34 CC ncRNAs :: 4 CC Pseudo Genes (total) :: 92 CC Pseudo Genes (ambiguous residues) :: 0 of 92 CC Pseudo Genes (frameshifted) :: 17 of 92 CC Pseudo Genes (incomplete) :: 71 of 92 CC Pseudo Genes (internal stop) :: 12 of 92 CC Pseudo Genes (multiple problems) :: 6 of 92 CC Genome Coverage :: 164x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 164x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..388 FT /organism="Staphylococcus sp. HMSC061F10" FT /host="Homo sapiens" FT /strain="HMSC061F10" FT /mol_type="genomic DNA" FT /isolation_source="vaginal/rectal" FT /db_xref="taxon:1715106" XX CO join(LWQD01000016.1:1..388) // ID KV830326; SV 1; linear; genomic DNA; CON; PRO; 21614 BP. XX AC KV830326; LWQD01000000; XX PR Project:PRJNA296234; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Staphylococcus sp. HMSC061F10 genomic scaffold Scaffold122, whole genome DE shotgun sequence. XX KW . XX OS Staphylococcus sp. HMSC061F10 OC Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcaceae; OC Staphylococcus. XX RN [1] RP 1-21614 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (25-MAR-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; a37877f363a15733e3ca7c054113a6b9. DR ENA; LWQD01000000; SET. DR ENA; LWQD00000000; SET. DR BioSample; SAMN04498612. XX CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 04/22/2016 17:47:28 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 2,375 CC CDS (total) :: 2,333 CC Genes (coding) :: 2,241 CC CDS (coding) :: 2,241 CC Genes (RNA) :: 42 CC rRNAs :: 2, 2 (16S, 23S) CC partial rRNAs :: 2, 2 (16S, 23S) CC tRNAs :: 34 CC ncRNAs :: 4 CC Pseudo Genes (total) :: 92 CC Pseudo Genes (ambiguous residues) :: 0 of 92 CC Pseudo Genes (frameshifted) :: 17 of 92 CC Pseudo Genes (incomplete) :: 71 of 92 CC Pseudo Genes (internal stop) :: 12 of 92 CC Pseudo Genes (multiple problems) :: 6 of 92 CC Genome Coverage :: 164x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 164x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..21614 FT /organism="Staphylococcus sp. HMSC061F10" FT /host="Homo sapiens" FT /strain="HMSC061F10" FT /mol_type="genomic DNA" FT /isolation_source="vaginal/rectal" FT /db_xref="taxon:1715106" XX CO join(LWQD01000017.1:1..21614) // ID KV830327; SV 1; linear; genomic DNA; CON; PRO; 212 BP. XX AC KV830327; LWQD01000000; XX PR Project:PRJNA296234; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Staphylococcus sp. HMSC061F10 genomic scaffold Scaffold1222, whole genome DE shotgun sequence. XX KW . XX OS Staphylococcus sp. HMSC061F10 OC Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcaceae; OC Staphylococcus. XX RN [1] RP 1-212 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (25-MAR-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; fbafa085cd802650e332a920bf35858b. DR ENA; LWQD01000000; SET. DR ENA; LWQD00000000; SET. DR BioSample; SAMN04498612. XX CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 04/22/2016 17:47:28 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 2,375 CC CDS (total) :: 2,333 CC Genes (coding) :: 2,241 CC CDS (coding) :: 2,241 CC Genes (RNA) :: 42 CC rRNAs :: 2, 2 (16S, 23S) CC partial rRNAs :: 2, 2 (16S, 23S) CC tRNAs :: 34 CC ncRNAs :: 4 CC Pseudo Genes (total) :: 92 CC Pseudo Genes (ambiguous residues) :: 0 of 92 CC Pseudo Genes (frameshifted) :: 17 of 92 CC Pseudo Genes (incomplete) :: 71 of 92 CC Pseudo Genes (internal stop) :: 12 of 92 CC Pseudo Genes (multiple problems) :: 6 of 92 CC Genome Coverage :: 164x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 164x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..212 FT /organism="Staphylococcus sp. HMSC061F10" FT /host="Homo sapiens" FT /strain="HMSC061F10" FT /mol_type="genomic DNA" FT /isolation_source="vaginal/rectal" FT /db_xref="taxon:1715106" XX CO join(LWQD01000018.1:1..212) // ID KV830328; SV 1; linear; genomic DNA; CON; PRO; 1280 BP. XX AC KV830328; LWQD01000000; XX PR Project:PRJNA296234; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Staphylococcus sp. HMSC061F10 genomic scaffold Scaffold1239, whole genome DE shotgun sequence. XX KW . XX OS Staphylococcus sp. HMSC061F10 OC Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcaceae; OC Staphylococcus. XX RN [1] RP 1-1280 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (25-MAR-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; 334a5be5b9af34037a291b8a47717681. DR ENA; LWQD01000000; SET. DR ENA; LWQD00000000; SET. DR BioSample; SAMN04498612. XX CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 04/22/2016 17:47:28 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 2,375 CC CDS (total) :: 2,333 CC Genes (coding) :: 2,241 CC CDS (coding) :: 2,241 CC Genes (RNA) :: 42 CC rRNAs :: 2, 2 (16S, 23S) CC partial rRNAs :: 2, 2 (16S, 23S) CC tRNAs :: 34 CC ncRNAs :: 4 CC Pseudo Genes (total) :: 92 CC Pseudo Genes (ambiguous residues) :: 0 of 92 CC Pseudo Genes (frameshifted) :: 17 of 92 CC Pseudo Genes (incomplete) :: 71 of 92 CC Pseudo Genes (internal stop) :: 12 of 92 CC Pseudo Genes (multiple problems) :: 6 of 92 CC Genome Coverage :: 164x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 164x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..1280 FT /organism="Staphylococcus sp. HMSC061F10" FT /host="Homo sapiens" FT /strain="HMSC061F10" FT /mol_type="genomic DNA" FT /isolation_source="vaginal/rectal" FT /db_xref="taxon:1715106" XX CO join(LWQD01000019.1:1..1280) // ID KV830329; SV 1; linear; genomic DNA; CON; PRO; 6855 BP. XX AC KV830329; LWQD01000000; XX PR Project:PRJNA296234; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Staphylococcus sp. HMSC061F10 genomic scaffold Scaffold1280, whole genome DE shotgun sequence. XX KW . XX OS Staphylococcus sp. HMSC061F10 OC Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcaceae; OC Staphylococcus. XX RN [1] RP 1-6855 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (25-MAR-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; 7ee937995f2fc3e720c7a89b99d850e4. DR ENA; LWQD01000000; SET. DR ENA; LWQD00000000; SET. DR BioSample; SAMN04498612. XX CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 04/22/2016 17:47:28 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 2,375 CC CDS (total) :: 2,333 CC Genes (coding) :: 2,241 CC CDS (coding) :: 2,241 CC Genes (RNA) :: 42 CC rRNAs :: 2, 2 (16S, 23S) CC partial rRNAs :: 2, 2 (16S, 23S) CC tRNAs :: 34 CC ncRNAs :: 4 CC Pseudo Genes (total) :: 92 CC Pseudo Genes (ambiguous residues) :: 0 of 92 CC Pseudo Genes (frameshifted) :: 17 of 92 CC Pseudo Genes (incomplete) :: 71 of 92 CC Pseudo Genes (internal stop) :: 12 of 92 CC Pseudo Genes (multiple problems) :: 6 of 92 CC Genome Coverage :: 164x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 164x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..6855 FT /organism="Staphylococcus sp. HMSC061F10" FT /host="Homo sapiens" FT /strain="HMSC061F10" FT /mol_type="genomic DNA" FT /isolation_source="vaginal/rectal" FT /db_xref="taxon:1715106" FT assembly_gap 2783..2882 FT /estimated_length=unknown FT /gap_type="within scaffold" FT /linkage_evidence="paired-ends" XX CO join(LWQD01000020.1:1..2782,gap(unk100),LWQD01000021.1:1..3973) // ID KV830330; SV 1; linear; genomic DNA; CON; PRO; 40438 BP. XX AC KV830330; LWQD01000000; XX PR Project:PRJNA296234; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Staphylococcus sp. HMSC061F10 genomic scaffold Scaffold129, whole genome DE shotgun sequence. XX KW . XX OS Staphylococcus sp. HMSC061F10 OC Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcaceae; OC Staphylococcus. XX RN [1] RP 1-40438 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (25-MAR-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; b2ed8687249d4eedf0969fa087bf4b8c. DR ENA; LWQD01000000; SET. DR ENA; LWQD00000000; SET. DR BioSample; SAMN04498612. XX CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 04/22/2016 17:47:28 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 2,375 CC CDS (total) :: 2,333 CC Genes (coding) :: 2,241 CC CDS (coding) :: 2,241 CC Genes (RNA) :: 42 CC rRNAs :: 2, 2 (16S, 23S) CC partial rRNAs :: 2, 2 (16S, 23S) CC tRNAs :: 34 CC ncRNAs :: 4 CC Pseudo Genes (total) :: 92 CC Pseudo Genes (ambiguous residues) :: 0 of 92 CC Pseudo Genes (frameshifted) :: 17 of 92 CC Pseudo Genes (incomplete) :: 71 of 92 CC Pseudo Genes (internal stop) :: 12 of 92 CC Pseudo Genes (multiple problems) :: 6 of 92 CC Genome Coverage :: 164x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 164x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..40438 FT /organism="Staphylococcus sp. HMSC061F10" FT /host="Homo sapiens" FT /strain="HMSC061F10" FT /mol_type="genomic DNA" FT /isolation_source="vaginal/rectal" FT /db_xref="taxon:1715106" XX CO join(LWQD01000022.1:1..40438) // ID KV830331; SV 1; linear; genomic DNA; CON; PRO; 10012 BP. XX AC KV830331; LWQD01000000; XX PR Project:PRJNA296234; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Staphylococcus sp. HMSC061F10 genomic scaffold Scaffold1313, whole genome DE shotgun sequence. XX KW . XX OS Staphylococcus sp. HMSC061F10 OC Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcaceae; OC Staphylococcus. XX RN [1] RP 1-10012 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (25-MAR-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; 5841f648967354d1fc802941fd2a61bf. DR ENA; LWQD01000000; SET. DR ENA; LWQD00000000; SET. DR BioSample; SAMN04498612. XX CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 04/22/2016 17:47:28 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 2,375 CC CDS (total) :: 2,333 CC Genes (coding) :: 2,241 CC CDS (coding) :: 2,241 CC Genes (RNA) :: 42 CC rRNAs :: 2, 2 (16S, 23S) CC partial rRNAs :: 2, 2 (16S, 23S) CC tRNAs :: 34 CC ncRNAs :: 4 CC Pseudo Genes (total) :: 92 CC Pseudo Genes (ambiguous residues) :: 0 of 92 CC Pseudo Genes (frameshifted) :: 17 of 92 CC Pseudo Genes (incomplete) :: 71 of 92 CC Pseudo Genes (internal stop) :: 12 of 92 CC Pseudo Genes (multiple problems) :: 6 of 92 CC Genome Coverage :: 164x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 164x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..10012 FT /organism="Staphylococcus sp. HMSC061F10" FT /host="Homo sapiens" FT /strain="HMSC061F10" FT /mol_type="genomic DNA" FT /isolation_source="vaginal/rectal" FT /db_xref="taxon:1715106" XX CO join(LWQD01000023.1:1..10012) // ID KV830332; SV 1; linear; genomic DNA; CON; PRO; 17005 BP. XX AC KV830332; LWQD01000000; XX PR Project:PRJNA296234; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Staphylococcus sp. HMSC061F10 genomic scaffold Scaffold133, whole genome DE shotgun sequence. XX KW . XX OS Staphylococcus sp. HMSC061F10 OC Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcaceae; OC Staphylococcus. XX RN [1] RP 1-17005 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (25-MAR-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; 115933ae9be6f7f0e771e014497ed11a. DR ENA; LWQD01000000; SET. DR ENA; LWQD00000000; SET. DR BioSample; SAMN04498612. XX CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 04/22/2016 17:47:28 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 2,375 CC CDS (total) :: 2,333 CC Genes (coding) :: 2,241 CC CDS (coding) :: 2,241 CC Genes (RNA) :: 42 CC rRNAs :: 2, 2 (16S, 23S) CC partial rRNAs :: 2, 2 (16S, 23S) CC tRNAs :: 34 CC ncRNAs :: 4 CC Pseudo Genes (total) :: 92 CC Pseudo Genes (ambiguous residues) :: 0 of 92 CC Pseudo Genes (frameshifted) :: 17 of 92 CC Pseudo Genes (incomplete) :: 71 of 92 CC Pseudo Genes (internal stop) :: 12 of 92 CC Pseudo Genes (multiple problems) :: 6 of 92 CC Genome Coverage :: 164x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 164x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..17005 FT /organism="Staphylococcus sp. HMSC061F10" FT /host="Homo sapiens" FT /strain="HMSC061F10" FT /mol_type="genomic DNA" FT /isolation_source="vaginal/rectal" FT /db_xref="taxon:1715106" XX CO join(LWQD01000024.1:1..17005) // ID KV830333; SV 1; linear; genomic DNA; CON; PRO; 21143 BP. XX AC KV830333; LWQD01000000; XX PR Project:PRJNA296234; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Staphylococcus sp. HMSC061F10 genomic scaffold Scaffold134, whole genome DE shotgun sequence. XX KW . XX OS Staphylococcus sp. HMSC061F10 OC Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcaceae; OC Staphylococcus. XX RN [1] RP 1-21143 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (25-MAR-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; e95046d1a625e8e6e28fffb5a2e6e66f. DR ENA; LWQD01000000; SET. DR ENA; LWQD00000000; SET. DR BioSample; SAMN04498612. XX CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 04/22/2016 17:47:28 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 2,375 CC CDS (total) :: 2,333 CC Genes (coding) :: 2,241 CC CDS (coding) :: 2,241 CC Genes (RNA) :: 42 CC rRNAs :: 2, 2 (16S, 23S) CC partial rRNAs :: 2, 2 (16S, 23S) CC tRNAs :: 34 CC ncRNAs :: 4 CC Pseudo Genes (total) :: 92 CC Pseudo Genes (ambiguous residues) :: 0 of 92 CC Pseudo Genes (frameshifted) :: 17 of 92 CC Pseudo Genes (incomplete) :: 71 of 92 CC Pseudo Genes (internal stop) :: 12 of 92 CC Pseudo Genes (multiple problems) :: 6 of 92 CC Genome Coverage :: 164x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 164x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..21143 FT /organism="Staphylococcus sp. HMSC061F10" FT /host="Homo sapiens" FT /strain="HMSC061F10" FT /mol_type="genomic DNA" FT /isolation_source="vaginal/rectal" FT /db_xref="taxon:1715106" XX CO join(LWQD01000025.1:1..21143) // ID KV830334; SV 1; linear; genomic DNA; CON; PRO; 6335 BP. XX AC KV830334; LWQD01000000; XX PR Project:PRJNA296234; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Staphylococcus sp. HMSC061F10 genomic scaffold Scaffold139, whole genome DE shotgun sequence. XX KW . XX OS Staphylococcus sp. HMSC061F10 OC Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcaceae; OC Staphylococcus. XX RN [1] RP 1-6335 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (25-MAR-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; 3bcc08a6147da6d506897a199e99ea95. DR ENA; LWQD01000000; SET. DR ENA; LWQD00000000; SET. DR BioSample; SAMN04498612. XX CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 04/22/2016 17:47:28 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 2,375 CC CDS (total) :: 2,333 CC Genes (coding) :: 2,241 CC CDS (coding) :: 2,241 CC Genes (RNA) :: 42 CC rRNAs :: 2, 2 (16S, 23S) CC partial rRNAs :: 2, 2 (16S, 23S) CC tRNAs :: 34 CC ncRNAs :: 4 CC Pseudo Genes (total) :: 92 CC Pseudo Genes (ambiguous residues) :: 0 of 92 CC Pseudo Genes (frameshifted) :: 17 of 92 CC Pseudo Genes (incomplete) :: 71 of 92 CC Pseudo Genes (internal stop) :: 12 of 92 CC Pseudo Genes (multiple problems) :: 6 of 92 CC Genome Coverage :: 164x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 164x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..6335 FT /organism="Staphylococcus sp. HMSC061F10" FT /host="Homo sapiens" FT /strain="HMSC061F10" FT /mol_type="genomic DNA" FT /isolation_source="vaginal/rectal" FT /db_xref="taxon:1715106" XX CO join(LWQD01000026.1:1..6335) // ID KV830335; SV 1; linear; genomic DNA; CON; PRO; 35416 BP. XX AC KV830335; LWQD01000000; XX PR Project:PRJNA296234; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Staphylococcus sp. HMSC061F10 genomic scaffold Scaffold14, whole genome DE shotgun sequence. XX KW . XX OS Staphylococcus sp. HMSC061F10 OC Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcaceae; OC Staphylococcus. XX RN [1] RP 1-35416 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (25-MAR-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; 21785651fe96acac25a921a17b316aaf. DR ENA; LWQD01000000; SET. DR ENA; LWQD00000000; SET. DR BioSample; SAMN04498612. XX CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 04/22/2016 17:47:28 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 2,375 CC CDS (total) :: 2,333 CC Genes (coding) :: 2,241 CC CDS (coding) :: 2,241 CC Genes (RNA) :: 42 CC rRNAs :: 2, 2 (16S, 23S) CC partial rRNAs :: 2, 2 (16S, 23S) CC tRNAs :: 34 CC ncRNAs :: 4 CC Pseudo Genes (total) :: 92 CC Pseudo Genes (ambiguous residues) :: 0 of 92 CC Pseudo Genes (frameshifted) :: 17 of 92 CC Pseudo Genes (incomplete) :: 71 of 92 CC Pseudo Genes (internal stop) :: 12 of 92 CC Pseudo Genes (multiple problems) :: 6 of 92 CC Genome Coverage :: 164x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 164x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..35416 FT /organism="Staphylococcus sp. HMSC061F10" FT /host="Homo sapiens" FT /strain="HMSC061F10" FT /mol_type="genomic DNA" FT /isolation_source="vaginal/rectal" FT /db_xref="taxon:1715106" XX CO join(LWQD01000027.1:1..35416) // ID KV830336; SV 1; linear; genomic DNA; CON; PRO; 3701 BP. XX AC KV830336; LWQD01000000; XX PR Project:PRJNA296234; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Staphylococcus sp. HMSC061F10 genomic scaffold Scaffold144, whole genome DE shotgun sequence. XX KW . XX OS Staphylococcus sp. HMSC061F10 OC Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcaceae; OC Staphylococcus. XX RN [1] RP 1-3701 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (25-MAR-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; 95afe8964a758f1dc2beb6a4b3caa53b. DR ENA; LWQD01000000; SET. DR ENA; LWQD00000000; SET. DR BioSample; SAMN04498612. XX CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 04/22/2016 17:47:28 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 2,375 CC CDS (total) :: 2,333 CC Genes (coding) :: 2,241 CC CDS (coding) :: 2,241 CC Genes (RNA) :: 42 CC rRNAs :: 2, 2 (16S, 23S) CC partial rRNAs :: 2, 2 (16S, 23S) CC tRNAs :: 34 CC ncRNAs :: 4 CC Pseudo Genes (total) :: 92 CC Pseudo Genes (ambiguous residues) :: 0 of 92 CC Pseudo Genes (frameshifted) :: 17 of 92 CC Pseudo Genes (incomplete) :: 71 of 92 CC Pseudo Genes (internal stop) :: 12 of 92 CC Pseudo Genes (multiple problems) :: 6 of 92 CC Genome Coverage :: 164x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 164x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..3701 FT /organism="Staphylococcus sp. HMSC061F10" FT /host="Homo sapiens" FT /strain="HMSC061F10" FT /mol_type="genomic DNA" FT /isolation_source="vaginal/rectal" FT /db_xref="taxon:1715106" XX CO join(LWQD01000028.1:1..3701) // ID KV830337; SV 1; linear; genomic DNA; CON; PRO; 21594 BP. XX AC KV830337; LWQD01000000; XX PR Project:PRJNA296234; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Staphylococcus sp. HMSC061F10 genomic scaffold Scaffold148, whole genome DE shotgun sequence. XX KW . XX OS Staphylococcus sp. HMSC061F10 OC Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcaceae; OC Staphylococcus. XX RN [1] RP 1-21594 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (25-MAR-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; 35d912ae4dd593a98d466e168d957353. DR ENA; LWQD01000000; SET. DR ENA; LWQD00000000; SET. DR BioSample; SAMN04498612. XX CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 04/22/2016 17:47:28 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 2,375 CC CDS (total) :: 2,333 CC Genes (coding) :: 2,241 CC CDS (coding) :: 2,241 CC Genes (RNA) :: 42 CC rRNAs :: 2, 2 (16S, 23S) CC partial rRNAs :: 2, 2 (16S, 23S) CC tRNAs :: 34 CC ncRNAs :: 4 CC Pseudo Genes (total) :: 92 CC Pseudo Genes (ambiguous residues) :: 0 of 92 CC Pseudo Genes (frameshifted) :: 17 of 92 CC Pseudo Genes (incomplete) :: 71 of 92 CC Pseudo Genes (internal stop) :: 12 of 92 CC Pseudo Genes (multiple problems) :: 6 of 92 CC Genome Coverage :: 164x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 164x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..21594 FT /organism="Staphylococcus sp. HMSC061F10" FT /host="Homo sapiens" FT /strain="HMSC061F10" FT /mol_type="genomic DNA" FT /isolation_source="vaginal/rectal" FT /db_xref="taxon:1715106" XX CO join(LWQD01000029.1:1..21594) // ID KV830338; SV 1; linear; genomic DNA; CON; PRO; 250 BP. XX AC KV830338; LWQD01000000; XX PR Project:PRJNA296234; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Staphylococcus sp. HMSC061F10 genomic scaffold Scaffold1529, whole genome DE shotgun sequence. XX KW . XX OS Staphylococcus sp. HMSC061F10 OC Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcaceae; OC Staphylococcus. XX RN [1] RP 1-250 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (25-MAR-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; 766986d48d2fe150e9c5b60d7281fae5. DR ENA; LWQD01000000; SET. DR ENA; LWQD00000000; SET. DR BioSample; SAMN04498612. XX CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 04/22/2016 17:47:28 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 2,375 CC CDS (total) :: 2,333 CC Genes (coding) :: 2,241 CC CDS (coding) :: 2,241 CC Genes (RNA) :: 42 CC rRNAs :: 2, 2 (16S, 23S) CC partial rRNAs :: 2, 2 (16S, 23S) CC tRNAs :: 34 CC ncRNAs :: 4 CC Pseudo Genes (total) :: 92 CC Pseudo Genes (ambiguous residues) :: 0 of 92 CC Pseudo Genes (frameshifted) :: 17 of 92 CC Pseudo Genes (incomplete) :: 71 of 92 CC Pseudo Genes (internal stop) :: 12 of 92 CC Pseudo Genes (multiple problems) :: 6 of 92 CC Genome Coverage :: 164x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 164x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..250 FT /organism="Staphylococcus sp. HMSC061F10" FT /host="Homo sapiens" FT /strain="HMSC061F10" FT /mol_type="genomic DNA" FT /isolation_source="vaginal/rectal" FT /db_xref="taxon:1715106" XX CO join(LWQD01000030.1:1..250) // ID KV830339; SV 1; linear; genomic DNA; CON; PRO; 2766 BP. XX AC KV830339; LWQD01000000; XX PR Project:PRJNA296234; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Staphylococcus sp. HMSC061F10 genomic scaffold Scaffold154, whole genome DE shotgun sequence. XX KW . XX OS Staphylococcus sp. HMSC061F10 OC Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcaceae; OC Staphylococcus. XX RN [1] RP 1-2766 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (25-MAR-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; 12af32da753f05d860a1baa1f325615f. DR ENA; LWQD01000000; SET. DR ENA; LWQD00000000; SET. DR BioSample; SAMN04498612. XX CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 04/22/2016 17:47:28 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 2,375 CC CDS (total) :: 2,333 CC Genes (coding) :: 2,241 CC CDS (coding) :: 2,241 CC Genes (RNA) :: 42 CC rRNAs :: 2, 2 (16S, 23S) CC partial rRNAs :: 2, 2 (16S, 23S) CC tRNAs :: 34 CC ncRNAs :: 4 CC Pseudo Genes (total) :: 92 CC Pseudo Genes (ambiguous residues) :: 0 of 92 CC Pseudo Genes (frameshifted) :: 17 of 92 CC Pseudo Genes (incomplete) :: 71 of 92 CC Pseudo Genes (internal stop) :: 12 of 92 CC Pseudo Genes (multiple problems) :: 6 of 92 CC Genome Coverage :: 164x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 164x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..2766 FT /organism="Staphylococcus sp. HMSC061F10" FT /host="Homo sapiens" FT /strain="HMSC061F10" FT /mol_type="genomic DNA" FT /isolation_source="vaginal/rectal" FT /db_xref="taxon:1715106" XX CO join(LWQD01000031.1:1..2766) // ID KV830340; SV 1; linear; genomic DNA; CON; PRO; 465 BP. XX AC KV830340; LWQD01000000; XX PR Project:PRJNA296234; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Staphylococcus sp. HMSC061F10 genomic scaffold Scaffold1546, whole genome DE shotgun sequence. XX KW . XX OS Staphylococcus sp. HMSC061F10 OC Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcaceae; OC Staphylococcus. XX RN [1] RP 1-465 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (25-MAR-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; 861b080366f4e1a3bf663db1ed75b7f2. DR ENA; LWQD01000000; SET. DR ENA; LWQD00000000; SET. DR BioSample; SAMN04498612. XX CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 04/22/2016 17:47:28 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 2,375 CC CDS (total) :: 2,333 CC Genes (coding) :: 2,241 CC CDS (coding) :: 2,241 CC Genes (RNA) :: 42 CC rRNAs :: 2, 2 (16S, 23S) CC partial rRNAs :: 2, 2 (16S, 23S) CC tRNAs :: 34 CC ncRNAs :: 4 CC Pseudo Genes (total) :: 92 CC Pseudo Genes (ambiguous residues) :: 0 of 92 CC Pseudo Genes (frameshifted) :: 17 of 92 CC Pseudo Genes (incomplete) :: 71 of 92 CC Pseudo Genes (internal stop) :: 12 of 92 CC Pseudo Genes (multiple problems) :: 6 of 92 CC Genome Coverage :: 164x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 164x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..465 FT /organism="Staphylococcus sp. HMSC061F10" FT /host="Homo sapiens" FT /strain="HMSC061F10" FT /mol_type="genomic DNA" FT /isolation_source="vaginal/rectal" FT /db_xref="taxon:1715106" XX CO join(LWQD01000032.1:1..465) // ID KV830341; SV 1; linear; genomic DNA; CON; PRO; 37106 BP. XX AC KV830341; LWQD01000000; XX PR Project:PRJNA296234; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Staphylococcus sp. HMSC061F10 genomic scaffold Scaffold155, whole genome DE shotgun sequence. XX KW . XX OS Staphylococcus sp. HMSC061F10 OC Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcaceae; OC Staphylococcus. XX RN [1] RP 1-37106 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (25-MAR-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; ac7c5a6ac09fa17b1d7179b407768e13. DR ENA; LWQD01000000; SET. DR ENA; LWQD00000000; SET. DR BioSample; SAMN04498612. XX CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 04/22/2016 17:47:28 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 2,375 CC CDS (total) :: 2,333 CC Genes (coding) :: 2,241 CC CDS (coding) :: 2,241 CC Genes (RNA) :: 42 CC rRNAs :: 2, 2 (16S, 23S) CC partial rRNAs :: 2, 2 (16S, 23S) CC tRNAs :: 34 CC ncRNAs :: 4 CC Pseudo Genes (total) :: 92 CC Pseudo Genes (ambiguous residues) :: 0 of 92 CC Pseudo Genes (frameshifted) :: 17 of 92 CC Pseudo Genes (incomplete) :: 71 of 92 CC Pseudo Genes (internal stop) :: 12 of 92 CC Pseudo Genes (multiple problems) :: 6 of 92 CC Genome Coverage :: 164x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 164x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..37106 FT /organism="Staphylococcus sp. HMSC061F10" FT /host="Homo sapiens" FT /strain="HMSC061F10" FT /mol_type="genomic DNA" FT /isolation_source="vaginal/rectal" FT /db_xref="taxon:1715106" FT assembly_gap 10707..10806 FT /estimated_length=unknown FT /gap_type="within scaffold" FT /linkage_evidence="paired-ends" FT assembly_gap 35283..35382 FT /estimated_length=unknown FT /gap_type="within scaffold" FT /linkage_evidence="paired-ends" XX CO join(LWQD01000033.1:1..10706,gap(unk100),LWQD01000034.1:1..24476, CO gap(unk100),LWQD01000035.1:1..1724) // ID KV830342; SV 1; linear; genomic DNA; CON; PRO; 3231 BP. XX AC KV830342; LWQD01000000; XX PR Project:PRJNA296234; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Staphylococcus sp. HMSC061F10 genomic scaffold Scaffold159, whole genome DE shotgun sequence. XX KW . XX OS Staphylococcus sp. HMSC061F10 OC Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcaceae; OC Staphylococcus. XX RN [1] RP 1-3231 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (25-MAR-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; 6cb9c5dcbdc8bbb3d8a3d2166b6969bf. DR ENA; LWQD01000000; SET. DR ENA; LWQD00000000; SET. DR BioSample; SAMN04498612. XX CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 04/22/2016 17:47:28 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 2,375 CC CDS (total) :: 2,333 CC Genes (coding) :: 2,241 CC CDS (coding) :: 2,241 CC Genes (RNA) :: 42 CC rRNAs :: 2, 2 (16S, 23S) CC partial rRNAs :: 2, 2 (16S, 23S) CC tRNAs :: 34 CC ncRNAs :: 4 CC Pseudo Genes (total) :: 92 CC Pseudo Genes (ambiguous residues) :: 0 of 92 CC Pseudo Genes (frameshifted) :: 17 of 92 CC Pseudo Genes (incomplete) :: 71 of 92 CC Pseudo Genes (internal stop) :: 12 of 92 CC Pseudo Genes (multiple problems) :: 6 of 92 CC Genome Coverage :: 164x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 164x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..3231 FT /organism="Staphylococcus sp. HMSC061F10" FT /host="Homo sapiens" FT /strain="HMSC061F10" FT /mol_type="genomic DNA" FT /isolation_source="vaginal/rectal" FT /db_xref="taxon:1715106" XX CO join(LWQD01000036.1:1..3231) // ID KV830343; SV 1; linear; genomic DNA; CON; PRO; 21066 BP. XX AC KV830343; LWQD01000000; XX PR Project:PRJNA296234; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Staphylococcus sp. HMSC061F10 genomic scaffold Scaffold16, whole genome DE shotgun sequence. XX KW . XX OS Staphylococcus sp. HMSC061F10 OC Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcaceae; OC Staphylococcus. XX RN [1] RP 1-21066 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (25-MAR-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; 6c4d1ff64b8ad472ba42950a94824384. DR ENA; LWQD01000000; SET. DR ENA; LWQD00000000; SET. DR BioSample; SAMN04498612. XX CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 04/22/2016 17:47:28 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 2,375 CC CDS (total) :: 2,333 CC Genes (coding) :: 2,241 CC CDS (coding) :: 2,241 CC Genes (RNA) :: 42 CC rRNAs :: 2, 2 (16S, 23S) CC partial rRNAs :: 2, 2 (16S, 23S) CC tRNAs :: 34 CC ncRNAs :: 4 CC Pseudo Genes (total) :: 92 CC Pseudo Genes (ambiguous residues) :: 0 of 92 CC Pseudo Genes (frameshifted) :: 17 of 92 CC Pseudo Genes (incomplete) :: 71 of 92 CC Pseudo Genes (internal stop) :: 12 of 92 CC Pseudo Genes (multiple problems) :: 6 of 92 CC Genome Coverage :: 164x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 164x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..21066 FT /organism="Staphylococcus sp. HMSC061F10" FT /host="Homo sapiens" FT /strain="HMSC061F10" FT /mol_type="genomic DNA" FT /isolation_source="vaginal/rectal" FT /db_xref="taxon:1715106" XX CO join(LWQD01000037.1:1..21066) // ID KV830344; SV 1; linear; genomic DNA; CON; PRO; 10336 BP. XX AC KV830344; LWQD01000000; XX PR Project:PRJNA296234; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Staphylococcus sp. HMSC061F10 genomic scaffold Scaffold160, whole genome DE shotgun sequence. XX KW . XX OS Staphylococcus sp. HMSC061F10 OC Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcaceae; OC Staphylococcus. XX RN [1] RP 1-10336 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (25-MAR-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; 1412ef5cc5db67c088636eba9f3464ab. DR ENA; LWQD01000000; SET. DR ENA; LWQD00000000; SET. DR BioSample; SAMN04498612. XX CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 04/22/2016 17:47:28 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 2,375 CC CDS (total) :: 2,333 CC Genes (coding) :: 2,241 CC CDS (coding) :: 2,241 CC Genes (RNA) :: 42 CC rRNAs :: 2, 2 (16S, 23S) CC partial rRNAs :: 2, 2 (16S, 23S) CC tRNAs :: 34 CC ncRNAs :: 4 CC Pseudo Genes (total) :: 92 CC Pseudo Genes (ambiguous residues) :: 0 of 92 CC Pseudo Genes (frameshifted) :: 17 of 92 CC Pseudo Genes (incomplete) :: 71 of 92 CC Pseudo Genes (internal stop) :: 12 of 92 CC Pseudo Genes (multiple problems) :: 6 of 92 CC Genome Coverage :: 164x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 164x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..10336 FT /organism="Staphylococcus sp. HMSC061F10" FT /host="Homo sapiens" FT /strain="HMSC061F10" FT /mol_type="genomic DNA" FT /isolation_source="vaginal/rectal" FT /db_xref="taxon:1715106" XX CO join(LWQD01000038.1:1..10336) // ID KV830345; SV 1; linear; genomic DNA; CON; PRO; 5400 BP. XX AC KV830345; LWQD01000000; XX PR Project:PRJNA296234; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Staphylococcus sp. HMSC061F10 genomic scaffold Scaffold17, whole genome DE shotgun sequence. XX KW . XX OS Staphylococcus sp. HMSC061F10 OC Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcaceae; OC Staphylococcus. XX RN [1] RP 1-5400 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (25-MAR-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; addf5baa34bba4432324ad2c5e2886fd. DR ENA; LWQD01000000; SET. DR ENA; LWQD00000000; SET. DR BioSample; SAMN04498612. XX CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 04/22/2016 17:47:28 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 2,375 CC CDS (total) :: 2,333 CC Genes (coding) :: 2,241 CC CDS (coding) :: 2,241 CC Genes (RNA) :: 42 CC rRNAs :: 2, 2 (16S, 23S) CC partial rRNAs :: 2, 2 (16S, 23S) CC tRNAs :: 34 CC ncRNAs :: 4 CC Pseudo Genes (total) :: 92 CC Pseudo Genes (ambiguous residues) :: 0 of 92 CC Pseudo Genes (frameshifted) :: 17 of 92 CC Pseudo Genes (incomplete) :: 71 of 92 CC Pseudo Genes (internal stop) :: 12 of 92 CC Pseudo Genes (multiple problems) :: 6 of 92 CC Genome Coverage :: 164x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 164x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..5400 FT /organism="Staphylococcus sp. HMSC061F10" FT /host="Homo sapiens" FT /strain="HMSC061F10" FT /mol_type="genomic DNA" FT /isolation_source="vaginal/rectal" FT /db_xref="taxon:1715106" XX CO join(LWQD01000039.1:1..5400) // ID KV830346; SV 1; linear; genomic DNA; CON; PRO; 1111 BP. XX AC KV830346; LWQD01000000; XX PR Project:PRJNA296234; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Staphylococcus sp. HMSC061F10 genomic scaffold Scaffold178, whole genome DE shotgun sequence. XX KW . XX OS Staphylococcus sp. HMSC061F10 OC Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcaceae; OC Staphylococcus. XX RN [1] RP 1-1111 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (25-MAR-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; 996358b7d0ffe482c2cca3cfdddbed83. DR ENA; LWQD01000000; SET. DR ENA; LWQD00000000; SET. DR BioSample; SAMN04498612. XX CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 04/22/2016 17:47:28 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 2,375 CC CDS (total) :: 2,333 CC Genes (coding) :: 2,241 CC CDS (coding) :: 2,241 CC Genes (RNA) :: 42 CC rRNAs :: 2, 2 (16S, 23S) CC partial rRNAs :: 2, 2 (16S, 23S) CC tRNAs :: 34 CC ncRNAs :: 4 CC Pseudo Genes (total) :: 92 CC Pseudo Genes (ambiguous residues) :: 0 of 92 CC Pseudo Genes (frameshifted) :: 17 of 92 CC Pseudo Genes (incomplete) :: 71 of 92 CC Pseudo Genes (internal stop) :: 12 of 92 CC Pseudo Genes (multiple problems) :: 6 of 92 CC Genome Coverage :: 164x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 164x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..1111 FT /organism="Staphylococcus sp. HMSC061F10" FT /host="Homo sapiens" FT /strain="HMSC061F10" FT /mol_type="genomic DNA" FT /isolation_source="vaginal/rectal" FT /db_xref="taxon:1715106" XX CO join(LWQD01000040.1:1..1111) // ID KV830347; SV 1; linear; genomic DNA; CON; PRO; 251 BP. XX AC KV830347; LWQD01000000; XX PR Project:PRJNA296234; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Staphylococcus sp. HMSC061F10 genomic scaffold Scaffold179, whole genome DE shotgun sequence. XX KW . XX OS Staphylococcus sp. HMSC061F10 OC Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcaceae; OC Staphylococcus. XX RN [1] RP 1-251 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (25-MAR-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; 635539932bb2ac5165dc11906fe325bb. DR ENA; LWQD01000000; SET. DR ENA; LWQD00000000; SET. DR BioSample; SAMN04498612. XX CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 04/22/2016 17:47:28 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 2,375 CC CDS (total) :: 2,333 CC Genes (coding) :: 2,241 CC CDS (coding) :: 2,241 CC Genes (RNA) :: 42 CC rRNAs :: 2, 2 (16S, 23S) CC partial rRNAs :: 2, 2 (16S, 23S) CC tRNAs :: 34 CC ncRNAs :: 4 CC Pseudo Genes (total) :: 92 CC Pseudo Genes (ambiguous residues) :: 0 of 92 CC Pseudo Genes (frameshifted) :: 17 of 92 CC Pseudo Genes (incomplete) :: 71 of 92 CC Pseudo Genes (internal stop) :: 12 of 92 CC Pseudo Genes (multiple problems) :: 6 of 92 CC Genome Coverage :: 164x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 164x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..251 FT /organism="Staphylococcus sp. HMSC061F10" FT /host="Homo sapiens" FT /strain="HMSC061F10" FT /mol_type="genomic DNA" FT /isolation_source="vaginal/rectal" FT /db_xref="taxon:1715106" XX CO join(LWQD01000041.1:1..251) // ID KV830348; SV 1; linear; genomic DNA; CON; PRO; 77172 BP. XX AC KV830348; LWQD01000000; XX PR Project:PRJNA296234; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Staphylococcus sp. HMSC061F10 genomic scaffold Scaffold18, whole genome DE shotgun sequence. XX KW . XX OS Staphylococcus sp. HMSC061F10 OC Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcaceae; OC Staphylococcus. XX RN [1] RP 1-77172 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (25-MAR-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; aade5a68f975ce445ef7e7140148b906. DR ENA; LWQD01000000; SET. DR ENA; LWQD00000000; SET. DR BioSample; SAMN04498612. XX CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 04/22/2016 17:47:28 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 2,375 CC CDS (total) :: 2,333 CC Genes (coding) :: 2,241 CC CDS (coding) :: 2,241 CC Genes (RNA) :: 42 CC rRNAs :: 2, 2 (16S, 23S) CC partial rRNAs :: 2, 2 (16S, 23S) CC tRNAs :: 34 CC ncRNAs :: 4 CC Pseudo Genes (total) :: 92 CC Pseudo Genes (ambiguous residues) :: 0 of 92 CC Pseudo Genes (frameshifted) :: 17 of 92 CC Pseudo Genes (incomplete) :: 71 of 92 CC Pseudo Genes (internal stop) :: 12 of 92 CC Pseudo Genes (multiple problems) :: 6 of 92 CC Genome Coverage :: 164x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 164x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..77172 FT /organism="Staphylococcus sp. HMSC061F10" FT /host="Homo sapiens" FT /strain="HMSC061F10" FT /mol_type="genomic DNA" FT /isolation_source="vaginal/rectal" FT /db_xref="taxon:1715106" XX CO join(LWQD01000042.1:1..77172) // ID KV830349; SV 1; linear; genomic DNA; CON; PRO; 1025 BP. XX AC KV830349; LWQD01000000; XX PR Project:PRJNA296234; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Staphylococcus sp. HMSC061F10 genomic scaffold Scaffold1801, whole genome DE shotgun sequence. XX KW . XX OS Staphylococcus sp. HMSC061F10 OC Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcaceae; OC Staphylococcus. XX RN [1] RP 1-1025 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (25-MAR-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; e68c0b4fd2df94ad207140e81e742b5e. DR ENA; LWQD01000000; SET. DR ENA; LWQD00000000; SET. DR BioSample; SAMN04498612. XX CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 04/22/2016 17:47:28 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 2,375 CC CDS (total) :: 2,333 CC Genes (coding) :: 2,241 CC CDS (coding) :: 2,241 CC Genes (RNA) :: 42 CC rRNAs :: 2, 2 (16S, 23S) CC partial rRNAs :: 2, 2 (16S, 23S) CC tRNAs :: 34 CC ncRNAs :: 4 CC Pseudo Genes (total) :: 92 CC Pseudo Genes (ambiguous residues) :: 0 of 92 CC Pseudo Genes (frameshifted) :: 17 of 92 CC Pseudo Genes (incomplete) :: 71 of 92 CC Pseudo Genes (internal stop) :: 12 of 92 CC Pseudo Genes (multiple problems) :: 6 of 92 CC Genome Coverage :: 164x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 164x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..1025 FT /organism="Staphylococcus sp. HMSC061F10" FT /host="Homo sapiens" FT /strain="HMSC061F10" FT /mol_type="genomic DNA" FT /isolation_source="vaginal/rectal" FT /db_xref="taxon:1715106" XX CO join(LWQD01000043.1:1..1025) // ID KV830350; SV 1; linear; genomic DNA; CON; PRO; 7367 BP. XX AC KV830350; LWQD01000000; XX PR Project:PRJNA296234; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Staphylococcus sp. HMSC061F10 genomic scaffold Scaffold181, whole genome DE shotgun sequence. XX KW . XX OS Staphylococcus sp. HMSC061F10 OC Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcaceae; OC Staphylococcus. XX RN [1] RP 1-7367 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (25-MAR-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; 2fed11da178983b4f042c3ebb576d2c5. DR ENA; LWQD01000000; SET. DR ENA; LWQD00000000; SET. DR BioSample; SAMN04498612. XX CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 04/22/2016 17:47:28 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 2,375 CC CDS (total) :: 2,333 CC Genes (coding) :: 2,241 CC CDS (coding) :: 2,241 CC Genes (RNA) :: 42 CC rRNAs :: 2, 2 (16S, 23S) CC partial rRNAs :: 2, 2 (16S, 23S) CC tRNAs :: 34 CC ncRNAs :: 4 CC Pseudo Genes (total) :: 92 CC Pseudo Genes (ambiguous residues) :: 0 of 92 CC Pseudo Genes (frameshifted) :: 17 of 92 CC Pseudo Genes (incomplete) :: 71 of 92 CC Pseudo Genes (internal stop) :: 12 of 92 CC Pseudo Genes (multiple problems) :: 6 of 92 CC Genome Coverage :: 164x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 164x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..7367 FT /organism="Staphylococcus sp. HMSC061F10" FT /host="Homo sapiens" FT /strain="HMSC061F10" FT /mol_type="genomic DNA" FT /isolation_source="vaginal/rectal" FT /db_xref="taxon:1715106" FT assembly_gap 1742..1841 FT /estimated_length=unknown FT /gap_type="within scaffold" FT /linkage_evidence="paired-ends" XX CO join(LWQD01000044.1:1..1741,gap(unk100),LWQD01000045.1:1..5526) // ID KV830351; SV 1; linear; genomic DNA; CON; PRO; 15987 BP. XX AC KV830351; LWQD01000000; XX PR Project:PRJNA296234; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Staphylococcus sp. HMSC061F10 genomic scaffold Scaffold1833, whole genome DE shotgun sequence. XX KW . XX OS Staphylococcus sp. HMSC061F10 OC Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcaceae; OC Staphylococcus. XX RN [1] RP 1-15987 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (25-MAR-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; 72c959a2a11f74ed35674d137ca8856a. DR ENA; LWQD01000000; SET. DR ENA; LWQD00000000; SET. DR BioSample; SAMN04498612. XX CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 04/22/2016 17:47:28 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 2,375 CC CDS (total) :: 2,333 CC Genes (coding) :: 2,241 CC CDS (coding) :: 2,241 CC Genes (RNA) :: 42 CC rRNAs :: 2, 2 (16S, 23S) CC partial rRNAs :: 2, 2 (16S, 23S) CC tRNAs :: 34 CC ncRNAs :: 4 CC Pseudo Genes (total) :: 92 CC Pseudo Genes (ambiguous residues) :: 0 of 92 CC Pseudo Genes (frameshifted) :: 17 of 92 CC Pseudo Genes (incomplete) :: 71 of 92 CC Pseudo Genes (internal stop) :: 12 of 92 CC Pseudo Genes (multiple problems) :: 6 of 92 CC Genome Coverage :: 164x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 164x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..15987 FT /organism="Staphylococcus sp. HMSC061F10" FT /host="Homo sapiens" FT /strain="HMSC061F10" FT /mol_type="genomic DNA" FT /isolation_source="vaginal/rectal" FT /db_xref="taxon:1715106" XX CO join(LWQD01000046.1:1..15987) // ID KV830352; SV 1; linear; genomic DNA; CON; PRO; 368 BP. XX AC KV830352; LWQD01000000; XX PR Project:PRJNA296234; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Staphylococcus sp. HMSC061F10 genomic scaffold Scaffold184, whole genome DE shotgun sequence. XX KW . XX OS Staphylococcus sp. HMSC061F10 OC Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcaceae; OC Staphylococcus. XX RN [1] RP 1-368 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (25-MAR-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; fd71d466d88ac84e4789e26a9c0210bb. DR ENA; LWQD01000000; SET. DR ENA; LWQD00000000; SET. DR BioSample; SAMN04498612. XX CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 04/22/2016 17:47:28 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 2,375 CC CDS (total) :: 2,333 CC Genes (coding) :: 2,241 CC CDS (coding) :: 2,241 CC Genes (RNA) :: 42 CC rRNAs :: 2, 2 (16S, 23S) CC partial rRNAs :: 2, 2 (16S, 23S) CC tRNAs :: 34 CC ncRNAs :: 4 CC Pseudo Genes (total) :: 92 CC Pseudo Genes (ambiguous residues) :: 0 of 92 CC Pseudo Genes (frameshifted) :: 17 of 92 CC Pseudo Genes (incomplete) :: 71 of 92 CC Pseudo Genes (internal stop) :: 12 of 92 CC Pseudo Genes (multiple problems) :: 6 of 92 CC Genome Coverage :: 164x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 164x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..368 FT /organism="Staphylococcus sp. HMSC061F10" FT /host="Homo sapiens" FT /strain="HMSC061F10" FT /mol_type="genomic DNA" FT /isolation_source="vaginal/rectal" FT /db_xref="taxon:1715106" XX CO join(LWQD01000047.1:1..368) // ID KV830353; SV 1; linear; genomic DNA; CON; PRO; 523 BP. XX AC KV830353; LWQD01000000; XX PR Project:PRJNA296234; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Staphylococcus sp. HMSC061F10 genomic scaffold Scaffold193, whole genome DE shotgun sequence. XX KW . XX OS Staphylococcus sp. HMSC061F10 OC Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcaceae; OC Staphylococcus. XX RN [1] RP 1-523 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (25-MAR-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; b294cad18a11053c41561ad02680ada4. DR ENA; LWQD01000000; SET. DR ENA; LWQD00000000; SET. DR BioSample; SAMN04498612. XX CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 04/22/2016 17:47:28 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 2,375 CC CDS (total) :: 2,333 CC Genes (coding) :: 2,241 CC CDS (coding) :: 2,241 CC Genes (RNA) :: 42 CC rRNAs :: 2, 2 (16S, 23S) CC partial rRNAs :: 2, 2 (16S, 23S) CC tRNAs :: 34 CC ncRNAs :: 4 CC Pseudo Genes (total) :: 92 CC Pseudo Genes (ambiguous residues) :: 0 of 92 CC Pseudo Genes (frameshifted) :: 17 of 92 CC Pseudo Genes (incomplete) :: 71 of 92 CC Pseudo Genes (internal stop) :: 12 of 92 CC Pseudo Genes (multiple problems) :: 6 of 92 CC Genome Coverage :: 164x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 164x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..523 FT /organism="Staphylococcus sp. HMSC061F10" FT /host="Homo sapiens" FT /strain="HMSC061F10" FT /mol_type="genomic DNA" FT /isolation_source="vaginal/rectal" FT /db_xref="taxon:1715106" XX CO join(LWQD01000048.1:1..523) // ID KV830354; SV 1; linear; genomic DNA; CON; PRO; 30700 BP. XX AC KV830354; LWQD01000000; XX PR Project:PRJNA296234; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Staphylococcus sp. HMSC061F10 genomic scaffold Scaffold1966, whole genome DE shotgun sequence. XX KW . XX OS Staphylococcus sp. HMSC061F10 OC Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcaceae; OC Staphylococcus. XX RN [1] RP 1-30700 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (25-MAR-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; 9b8e9171a2389863b11278c0ed3f08dd. DR ENA; LWQD01000000; SET. DR ENA; LWQD00000000; SET. DR BioSample; SAMN04498612. XX CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 04/22/2016 17:47:28 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 2,375 CC CDS (total) :: 2,333 CC Genes (coding) :: 2,241 CC CDS (coding) :: 2,241 CC Genes (RNA) :: 42 CC rRNAs :: 2, 2 (16S, 23S) CC partial rRNAs :: 2, 2 (16S, 23S) CC tRNAs :: 34 CC ncRNAs :: 4 CC Pseudo Genes (total) :: 92 CC Pseudo Genes (ambiguous residues) :: 0 of 92 CC Pseudo Genes (frameshifted) :: 17 of 92 CC Pseudo Genes (incomplete) :: 71 of 92 CC Pseudo Genes (internal stop) :: 12 of 92 CC Pseudo Genes (multiple problems) :: 6 of 92 CC Genome Coverage :: 164x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 164x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..30700 FT /organism="Staphylococcus sp. HMSC061F10" FT /host="Homo sapiens" FT /strain="HMSC061F10" FT /mol_type="genomic DNA" FT /isolation_source="vaginal/rectal" FT /db_xref="taxon:1715106" FT assembly_gap 15937..16036 FT /estimated_length=unknown FT /gap_type="within scaffold" FT /linkage_evidence="paired-ends" XX CO join(LWQD01000049.1:1..15936,gap(unk100),LWQD01000050.1:1..14664) // ID KV830355; SV 1; linear; genomic DNA; CON; PRO; 439 BP. XX AC KV830355; LWQD01000000; XX PR Project:PRJNA296234; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Staphylococcus sp. HMSC061F10 genomic scaffold Scaffold199, whole genome DE shotgun sequence. XX KW . XX OS Staphylococcus sp. HMSC061F10 OC Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcaceae; OC Staphylococcus. XX RN [1] RP 1-439 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (25-MAR-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; 5684507f39064c13078c907a2ef106f4. DR ENA; LWQD01000000; SET. DR ENA; LWQD00000000; SET. DR BioSample; SAMN04498612. XX CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 04/22/2016 17:47:28 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 2,375 CC CDS (total) :: 2,333 CC Genes (coding) :: 2,241 CC CDS (coding) :: 2,241 CC Genes (RNA) :: 42 CC rRNAs :: 2, 2 (16S, 23S) CC partial rRNAs :: 2, 2 (16S, 23S) CC tRNAs :: 34 CC ncRNAs :: 4 CC Pseudo Genes (total) :: 92 CC Pseudo Genes (ambiguous residues) :: 0 of 92 CC Pseudo Genes (frameshifted) :: 17 of 92 CC Pseudo Genes (incomplete) :: 71 of 92 CC Pseudo Genes (internal stop) :: 12 of 92 CC Pseudo Genes (multiple problems) :: 6 of 92 CC Genome Coverage :: 164x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 164x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..439 FT /organism="Staphylococcus sp. HMSC061F10" FT /host="Homo sapiens" FT /strain="HMSC061F10" FT /mol_type="genomic DNA" FT /isolation_source="vaginal/rectal" FT /db_xref="taxon:1715106" XX CO join(LWQD01000051.1:1..439) // ID KV830356; SV 1; linear; genomic DNA; CON; PRO; 85395 BP. XX AC KV830356; LWQD01000000; XX PR Project:PRJNA296234; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Staphylococcus sp. HMSC061F10 genomic scaffold Scaffold203, whole genome DE shotgun sequence. XX KW . XX OS Staphylococcus sp. HMSC061F10 OC Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcaceae; OC Staphylococcus. XX RN [1] RP 1-85395 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (25-MAR-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; 6e1f14a9e18ab97d1589486de2954fc6. DR ENA; LWQD01000000; SET. DR ENA; LWQD00000000; SET. DR BioSample; SAMN04498612. XX CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 04/22/2016 17:47:28 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 2,375 CC CDS (total) :: 2,333 CC Genes (coding) :: 2,241 CC CDS (coding) :: 2,241 CC Genes (RNA) :: 42 CC rRNAs :: 2, 2 (16S, 23S) CC partial rRNAs :: 2, 2 (16S, 23S) CC tRNAs :: 34 CC ncRNAs :: 4 CC Pseudo Genes (total) :: 92 CC Pseudo Genes (ambiguous residues) :: 0 of 92 CC Pseudo Genes (frameshifted) :: 17 of 92 CC Pseudo Genes (incomplete) :: 71 of 92 CC Pseudo Genes (internal stop) :: 12 of 92 CC Pseudo Genes (multiple problems) :: 6 of 92 CC Genome Coverage :: 164x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 164x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..85395 FT /organism="Staphylococcus sp. HMSC061F10" FT /host="Homo sapiens" FT /strain="HMSC061F10" FT /mol_type="genomic DNA" FT /isolation_source="vaginal/rectal" FT /db_xref="taxon:1715106" XX CO join(LWQD01000052.1:1..85395) // ID KV830357; SV 1; linear; genomic DNA; CON; PRO; 32330 BP. XX AC KV830357; LWQD01000000; XX PR Project:PRJNA296234; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Staphylococcus sp. HMSC061F10 genomic scaffold Scaffold205, whole genome DE shotgun sequence. XX KW . XX OS Staphylococcus sp. HMSC061F10 OC Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcaceae; OC Staphylococcus. XX RN [1] RP 1-32330 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (25-MAR-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; 99b3ae368478798fe1f4e458a9e8be78. DR ENA; LWQD01000000; SET. DR ENA; LWQD00000000; SET. DR BioSample; SAMN04498612. XX CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 04/22/2016 17:47:28 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 2,375 CC CDS (total) :: 2,333 CC Genes (coding) :: 2,241 CC CDS (coding) :: 2,241 CC Genes (RNA) :: 42 CC rRNAs :: 2, 2 (16S, 23S) CC partial rRNAs :: 2, 2 (16S, 23S) CC tRNAs :: 34 CC ncRNAs :: 4 CC Pseudo Genes (total) :: 92 CC Pseudo Genes (ambiguous residues) :: 0 of 92 CC Pseudo Genes (frameshifted) :: 17 of 92 CC Pseudo Genes (incomplete) :: 71 of 92 CC Pseudo Genes (internal stop) :: 12 of 92 CC Pseudo Genes (multiple problems) :: 6 of 92 CC Genome Coverage :: 164x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 164x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..32330 FT /organism="Staphylococcus sp. HMSC061F10" FT /host="Homo sapiens" FT /strain="HMSC061F10" FT /mol_type="genomic DNA" FT /isolation_source="vaginal/rectal" FT /db_xref="taxon:1715106" XX CO join(LWQD01000053.1:1..32330) // ID KV830358; SV 1; linear; genomic DNA; CON; PRO; 37734 BP. XX AC KV830358; LWQD01000000; XX PR Project:PRJNA296234; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Staphylococcus sp. HMSC061F10 genomic scaffold Scaffold206, whole genome DE shotgun sequence. XX KW . XX OS Staphylococcus sp. HMSC061F10 OC Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcaceae; OC Staphylococcus. XX RN [1] RP 1-37734 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (25-MAR-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; 2f5dece8c158a7eceeb394d0c57193ba. DR ENA; LWQD01000000; SET. DR ENA; LWQD00000000; SET. DR BioSample; SAMN04498612. XX CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 04/22/2016 17:47:28 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 2,375 CC CDS (total) :: 2,333 CC Genes (coding) :: 2,241 CC CDS (coding) :: 2,241 CC Genes (RNA) :: 42 CC rRNAs :: 2, 2 (16S, 23S) CC partial rRNAs :: 2, 2 (16S, 23S) CC tRNAs :: 34 CC ncRNAs :: 4 CC Pseudo Genes (total) :: 92 CC Pseudo Genes (ambiguous residues) :: 0 of 92 CC Pseudo Genes (frameshifted) :: 17 of 92 CC Pseudo Genes (incomplete) :: 71 of 92 CC Pseudo Genes (internal stop) :: 12 of 92 CC Pseudo Genes (multiple problems) :: 6 of 92 CC Genome Coverage :: 164x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 164x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..37734 FT /organism="Staphylococcus sp. HMSC061F10" FT /host="Homo sapiens" FT /strain="HMSC061F10" FT /mol_type="genomic DNA" FT /isolation_source="vaginal/rectal" FT /db_xref="taxon:1715106" XX CO join(LWQD01000054.1:1..37734) // ID KV830359; SV 1; linear; genomic DNA; CON; PRO; 73470 BP. XX AC KV830359; LWQD01000000; XX PR Project:PRJNA296234; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Staphylococcus sp. HMSC061F10 genomic scaffold Scaffold214, whole genome DE shotgun sequence. XX KW . XX OS Staphylococcus sp. HMSC061F10 OC Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcaceae; OC Staphylococcus. XX RN [1] RP 1-73470 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (25-MAR-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; 96c36506206f3fbf4603cee71471f0f5. DR ENA; LWQD01000000; SET. DR ENA; LWQD00000000; SET. DR BioSample; SAMN04498612. XX CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 04/22/2016 17:47:28 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 2,375 CC CDS (total) :: 2,333 CC Genes (coding) :: 2,241 CC CDS (coding) :: 2,241 CC Genes (RNA) :: 42 CC rRNAs :: 2, 2 (16S, 23S) CC partial rRNAs :: 2, 2 (16S, 23S) CC tRNAs :: 34 CC ncRNAs :: 4 CC Pseudo Genes (total) :: 92 CC Pseudo Genes (ambiguous residues) :: 0 of 92 CC Pseudo Genes (frameshifted) :: 17 of 92 CC Pseudo Genes (incomplete) :: 71 of 92 CC Pseudo Genes (internal stop) :: 12 of 92 CC Pseudo Genes (multiple problems) :: 6 of 92 CC Genome Coverage :: 164x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 164x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..73470 FT /organism="Staphylococcus sp. HMSC061F10" FT /host="Homo sapiens" FT /strain="HMSC061F10" FT /mol_type="genomic DNA" FT /isolation_source="vaginal/rectal" FT /db_xref="taxon:1715106" FT assembly_gap 46745..46844 FT /estimated_length=unknown FT /gap_type="within scaffold" FT /linkage_evidence="paired-ends" FT assembly_gap 62420..62519 FT /estimated_length=unknown FT /gap_type="within scaffold" FT /linkage_evidence="paired-ends" XX CO join(LWQD01000055.1:1..46744,gap(unk100),LWQD01000056.1:1..15575, CO gap(unk100),LWQD01000057.1:1..10951) // ID KV830360; SV 1; linear; genomic DNA; CON; PRO; 8508 BP. XX AC KV830360; LWQD01000000; XX PR Project:PRJNA296234; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Staphylococcus sp. HMSC061F10 genomic scaffold Scaffold215, whole genome DE shotgun sequence. XX KW . XX OS Staphylococcus sp. HMSC061F10 OC Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcaceae; OC Staphylococcus. XX RN [1] RP 1-8508 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (25-MAR-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; e49e0cf103ed3bdb4fdf30027346af32. DR ENA; LWQD01000000; SET. DR ENA; LWQD00000000; SET. DR BioSample; SAMN04498612. XX CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 04/22/2016 17:47:28 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 2,375 CC CDS (total) :: 2,333 CC Genes (coding) :: 2,241 CC CDS (coding) :: 2,241 CC Genes (RNA) :: 42 CC rRNAs :: 2, 2 (16S, 23S) CC partial rRNAs :: 2, 2 (16S, 23S) CC tRNAs :: 34 CC ncRNAs :: 4 CC Pseudo Genes (total) :: 92 CC Pseudo Genes (ambiguous residues) :: 0 of 92 CC Pseudo Genes (frameshifted) :: 17 of 92 CC Pseudo Genes (incomplete) :: 71 of 92 CC Pseudo Genes (internal stop) :: 12 of 92 CC Pseudo Genes (multiple problems) :: 6 of 92 CC Genome Coverage :: 164x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 164x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..8508 FT /organism="Staphylococcus sp. HMSC061F10" FT /host="Homo sapiens" FT /strain="HMSC061F10" FT /mol_type="genomic DNA" FT /isolation_source="vaginal/rectal" FT /db_xref="taxon:1715106" XX CO join(LWQD01000058.1:1..8508) // ID KV830361; SV 1; linear; genomic DNA; CON; PRO; 4265 BP. XX AC KV830361; LWQD01000000; XX PR Project:PRJNA296234; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Staphylococcus sp. HMSC061F10 genomic scaffold Scaffold221, whole genome DE shotgun sequence. XX KW . XX OS Staphylococcus sp. HMSC061F10 OC Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcaceae; OC Staphylococcus. XX RN [1] RP 1-4265 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (25-MAR-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; 17cc37583cd71d1542ab41e18e00df1d. DR ENA; LWQD01000000; SET. DR ENA; LWQD00000000; SET. DR BioSample; SAMN04498612. XX CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 04/22/2016 17:47:28 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 2,375 CC CDS (total) :: 2,333 CC Genes (coding) :: 2,241 CC CDS (coding) :: 2,241 CC Genes (RNA) :: 42 CC rRNAs :: 2, 2 (16S, 23S) CC partial rRNAs :: 2, 2 (16S, 23S) CC tRNAs :: 34 CC ncRNAs :: 4 CC Pseudo Genes (total) :: 92 CC Pseudo Genes (ambiguous residues) :: 0 of 92 CC Pseudo Genes (frameshifted) :: 17 of 92 CC Pseudo Genes (incomplete) :: 71 of 92 CC Pseudo Genes (internal stop) :: 12 of 92 CC Pseudo Genes (multiple problems) :: 6 of 92 CC Genome Coverage :: 164x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 164x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..4265 FT /organism="Staphylococcus sp. HMSC061F10" FT /host="Homo sapiens" FT /strain="HMSC061F10" FT /mol_type="genomic DNA" FT /isolation_source="vaginal/rectal" FT /db_xref="taxon:1715106" XX CO join(LWQD01000059.1:1..4265) // ID KV830362; SV 1; linear; genomic DNA; CON; PRO; 692 BP. XX AC KV830362; LWQD01000000; XX PR Project:PRJNA296234; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Staphylococcus sp. HMSC061F10 genomic scaffold Scaffold225, whole genome DE shotgun sequence. XX KW . XX OS Staphylococcus sp. HMSC061F10 OC Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcaceae; OC Staphylococcus. XX RN [1] RP 1-692 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (25-MAR-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; 0539670f94b71339222c3fcdd59607f6. DR ENA; LWQD01000000; SET. DR ENA; LWQD00000000; SET. DR BioSample; SAMN04498612. XX CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 04/22/2016 17:47:28 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 2,375 CC CDS (total) :: 2,333 CC Genes (coding) :: 2,241 CC CDS (coding) :: 2,241 CC Genes (RNA) :: 42 CC rRNAs :: 2, 2 (16S, 23S) CC partial rRNAs :: 2, 2 (16S, 23S) CC tRNAs :: 34 CC ncRNAs :: 4 CC Pseudo Genes (total) :: 92 CC Pseudo Genes (ambiguous residues) :: 0 of 92 CC Pseudo Genes (frameshifted) :: 17 of 92 CC Pseudo Genes (incomplete) :: 71 of 92 CC Pseudo Genes (internal stop) :: 12 of 92 CC Pseudo Genes (multiple problems) :: 6 of 92 CC Genome Coverage :: 164x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 164x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..692 FT /organism="Staphylococcus sp. HMSC061F10" FT /host="Homo sapiens" FT /strain="HMSC061F10" FT /mol_type="genomic DNA" FT /isolation_source="vaginal/rectal" FT /db_xref="taxon:1715106" XX CO join(LWQD01000060.1:1..692) // ID KV830363; SV 1; linear; genomic DNA; CON; PRO; 371 BP. XX AC KV830363; LWQD01000000; XX PR Project:PRJNA296234; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Staphylococcus sp. HMSC061F10 genomic scaffold Scaffold231, whole genome DE shotgun sequence. XX KW . XX OS Staphylococcus sp. HMSC061F10 OC Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcaceae; OC Staphylococcus. XX RN [1] RP 1-371 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (25-MAR-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; cf86081ab78429583969e75c2705810d. DR ENA; LWQD01000000; SET. DR ENA; LWQD00000000; SET. DR BioSample; SAMN04498612. XX CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 04/22/2016 17:47:28 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 2,375 CC CDS (total) :: 2,333 CC Genes (coding) :: 2,241 CC CDS (coding) :: 2,241 CC Genes (RNA) :: 42 CC rRNAs :: 2, 2 (16S, 23S) CC partial rRNAs :: 2, 2 (16S, 23S) CC tRNAs :: 34 CC ncRNAs :: 4 CC Pseudo Genes (total) :: 92 CC Pseudo Genes (ambiguous residues) :: 0 of 92 CC Pseudo Genes (frameshifted) :: 17 of 92 CC Pseudo Genes (incomplete) :: 71 of 92 CC Pseudo Genes (internal stop) :: 12 of 92 CC Pseudo Genes (multiple problems) :: 6 of 92 CC Genome Coverage :: 164x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 164x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..371 FT /organism="Staphylococcus sp. HMSC061F10" FT /host="Homo sapiens" FT /strain="HMSC061F10" FT /mol_type="genomic DNA" FT /isolation_source="vaginal/rectal" FT /db_xref="taxon:1715106" XX CO join(LWQD01000061.1:1..371) // ID KV830364; SV 1; linear; genomic DNA; CON; PRO; 46803 BP. XX AC KV830364; LWQD01000000; XX PR Project:PRJNA296234; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Staphylococcus sp. HMSC061F10 genomic scaffold Scaffold236, whole genome DE shotgun sequence. XX KW . XX OS Staphylococcus sp. HMSC061F10 OC Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcaceae; OC Staphylococcus. XX RN [1] RP 1-46803 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (25-MAR-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; 0bbea1e5130299e5ec4fa3a48a989d6d. DR ENA; LWQD01000000; SET. DR ENA; LWQD00000000; SET. DR BioSample; SAMN04498612. XX CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 04/22/2016 17:47:28 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 2,375 CC CDS (total) :: 2,333 CC Genes (coding) :: 2,241 CC CDS (coding) :: 2,241 CC Genes (RNA) :: 42 CC rRNAs :: 2, 2 (16S, 23S) CC partial rRNAs :: 2, 2 (16S, 23S) CC tRNAs :: 34 CC ncRNAs :: 4 CC Pseudo Genes (total) :: 92 CC Pseudo Genes (ambiguous residues) :: 0 of 92 CC Pseudo Genes (frameshifted) :: 17 of 92 CC Pseudo Genes (incomplete) :: 71 of 92 CC Pseudo Genes (internal stop) :: 12 of 92 CC Pseudo Genes (multiple problems) :: 6 of 92 CC Genome Coverage :: 164x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 164x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..46803 FT /organism="Staphylococcus sp. HMSC061F10" FT /host="Homo sapiens" FT /strain="HMSC061F10" FT /mol_type="genomic DNA" FT /isolation_source="vaginal/rectal" FT /db_xref="taxon:1715106" XX CO join(LWQD01000062.1:1..46803) // ID KV830365; SV 1; linear; genomic DNA; CON; PRO; 127002 BP. XX AC KV830365; LWQD01000000; XX PR Project:PRJNA296234; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Staphylococcus sp. HMSC061F10 genomic scaffold Scaffold237, whole genome DE shotgun sequence. XX KW . XX OS Staphylococcus sp. HMSC061F10 OC Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcaceae; OC Staphylococcus. XX RN [1] RP 1-127002 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (25-MAR-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; 470c30d7712d92930c61d15d43a9f4fb. DR ENA; LWQD01000000; SET. DR ENA; LWQD00000000; SET. DR BioSample; SAMN04498612. XX CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 04/22/2016 17:47:28 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 2,375 CC CDS (total) :: 2,333 CC Genes (coding) :: 2,241 CC CDS (coding) :: 2,241 CC Genes (RNA) :: 42 CC rRNAs :: 2, 2 (16S, 23S) CC partial rRNAs :: 2, 2 (16S, 23S) CC tRNAs :: 34 CC ncRNAs :: 4 CC Pseudo Genes (total) :: 92 CC Pseudo Genes (ambiguous residues) :: 0 of 92 CC Pseudo Genes (frameshifted) :: 17 of 92 CC Pseudo Genes (incomplete) :: 71 of 92 CC Pseudo Genes (internal stop) :: 12 of 92 CC Pseudo Genes (multiple problems) :: 6 of 92 CC Genome Coverage :: 164x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 164x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..127002 FT /organism="Staphylococcus sp. HMSC061F10" FT /host="Homo sapiens" FT /strain="HMSC061F10" FT /mol_type="genomic DNA" FT /isolation_source="vaginal/rectal" FT /db_xref="taxon:1715106" FT assembly_gap 28570..28669 FT /estimated_length=unknown FT /gap_type="within scaffold" FT /linkage_evidence="paired-ends" FT assembly_gap 80736..80835 FT /estimated_length=unknown FT /gap_type="within scaffold" FT /linkage_evidence="paired-ends" XX CO join(LWQD01000063.1:1..28569,gap(unk100),LWQD01000064.1:1..52066, CO gap(unk100),LWQD01000065.1:1..46167) // ID KV830366; SV 1; linear; genomic DNA; CON; PRO; 474 BP. XX AC KV830366; LWQD01000000; XX PR Project:PRJNA296234; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Staphylococcus sp. HMSC061F10 genomic scaffold Scaffold238, whole genome DE shotgun sequence. XX KW . XX OS Staphylococcus sp. HMSC061F10 OC Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcaceae; OC Staphylococcus. XX RN [1] RP 1-474 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (25-MAR-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; 5107c87aca62bb8f86fa5d0a1f37099f. DR ENA; LWQD01000000; SET. DR ENA; LWQD00000000; SET. DR BioSample; SAMN04498612. XX CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 04/22/2016 17:47:28 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 2,375 CC CDS (total) :: 2,333 CC Genes (coding) :: 2,241 CC CDS (coding) :: 2,241 CC Genes (RNA) :: 42 CC rRNAs :: 2, 2 (16S, 23S) CC partial rRNAs :: 2, 2 (16S, 23S) CC tRNAs :: 34 CC ncRNAs :: 4 CC Pseudo Genes (total) :: 92 CC Pseudo Genes (ambiguous residues) :: 0 of 92 CC Pseudo Genes (frameshifted) :: 17 of 92 CC Pseudo Genes (incomplete) :: 71 of 92 CC Pseudo Genes (internal stop) :: 12 of 92 CC Pseudo Genes (multiple problems) :: 6 of 92 CC Genome Coverage :: 164x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 164x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..474 FT /organism="Staphylococcus sp. HMSC061F10" FT /host="Homo sapiens" FT /strain="HMSC061F10" FT /mol_type="genomic DNA" FT /isolation_source="vaginal/rectal" FT /db_xref="taxon:1715106" XX CO join(LWQD01000066.1:1..474) // ID KV830367; SV 1; linear; genomic DNA; CON; PRO; 578 BP. XX AC KV830367; LWQD01000000; XX PR Project:PRJNA296234; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Staphylococcus sp. HMSC061F10 genomic scaffold Scaffold240, whole genome DE shotgun sequence. XX KW . XX OS Staphylococcus sp. HMSC061F10 OC Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcaceae; OC Staphylococcus. XX RN [1] RP 1-578 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (25-MAR-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; 8e87692096df04ffbd1dd671f6962ec4. DR ENA; LWQD01000000; SET. DR ENA; LWQD00000000; SET. DR BioSample; SAMN04498612. XX CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 04/22/2016 17:47:28 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 2,375 CC CDS (total) :: 2,333 CC Genes (coding) :: 2,241 CC CDS (coding) :: 2,241 CC Genes (RNA) :: 42 CC rRNAs :: 2, 2 (16S, 23S) CC partial rRNAs :: 2, 2 (16S, 23S) CC tRNAs :: 34 CC ncRNAs :: 4 CC Pseudo Genes (total) :: 92 CC Pseudo Genes (ambiguous residues) :: 0 of 92 CC Pseudo Genes (frameshifted) :: 17 of 92 CC Pseudo Genes (incomplete) :: 71 of 92 CC Pseudo Genes (internal stop) :: 12 of 92 CC Pseudo Genes (multiple problems) :: 6 of 92 CC Genome Coverage :: 164x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 164x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..578 FT /organism="Staphylococcus sp. HMSC061F10" FT /host="Homo sapiens" FT /strain="HMSC061F10" FT /mol_type="genomic DNA" FT /isolation_source="vaginal/rectal" FT /db_xref="taxon:1715106" XX CO join(LWQD01000067.1:1..578) // ID KV830368; SV 1; linear; genomic DNA; CON; PRO; 274 BP. XX AC KV830368; LWQD01000000; XX PR Project:PRJNA296234; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Staphylococcus sp. HMSC061F10 genomic scaffold Scaffold241, whole genome DE shotgun sequence. XX KW . XX OS Staphylococcus sp. HMSC061F10 OC Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcaceae; OC Staphylococcus. XX RN [1] RP 1-274 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (25-MAR-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; 04d51a2c5fde7a7a9fe1f643508a946e. DR ENA; LWQD01000000; SET. DR ENA; LWQD00000000; SET. DR BioSample; SAMN04498612. XX CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 04/22/2016 17:47:28 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 2,375 CC CDS (total) :: 2,333 CC Genes (coding) :: 2,241 CC CDS (coding) :: 2,241 CC Genes (RNA) :: 42 CC rRNAs :: 2, 2 (16S, 23S) CC partial rRNAs :: 2, 2 (16S, 23S) CC tRNAs :: 34 CC ncRNAs :: 4 CC Pseudo Genes (total) :: 92 CC Pseudo Genes (ambiguous residues) :: 0 of 92 CC Pseudo Genes (frameshifted) :: 17 of 92 CC Pseudo Genes (incomplete) :: 71 of 92 CC Pseudo Genes (internal stop) :: 12 of 92 CC Pseudo Genes (multiple problems) :: 6 of 92 CC Genome Coverage :: 164x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 164x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..274 FT /organism="Staphylococcus sp. HMSC061F10" FT /host="Homo sapiens" FT /strain="HMSC061F10" FT /mol_type="genomic DNA" FT /isolation_source="vaginal/rectal" FT /db_xref="taxon:1715106" XX CO join(LWQD01000068.1:1..274) // ID KV830369; SV 1; linear; genomic DNA; CON; PRO; 38407 BP. XX AC KV830369; LWQD01000000; XX PR Project:PRJNA296234; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Staphylococcus sp. HMSC061F10 genomic scaffold Scaffold242, whole genome DE shotgun sequence. XX KW . XX OS Staphylococcus sp. HMSC061F10 OC Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcaceae; OC Staphylococcus. XX RN [1] RP 1-38407 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (25-MAR-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; 384a8d40782ad1b133fcb5c585637d0f. DR ENA; LWQD01000000; SET. DR ENA; LWQD00000000; SET. DR BioSample; SAMN04498612. XX CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 04/22/2016 17:47:28 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 2,375 CC CDS (total) :: 2,333 CC Genes (coding) :: 2,241 CC CDS (coding) :: 2,241 CC Genes (RNA) :: 42 CC rRNAs :: 2, 2 (16S, 23S) CC partial rRNAs :: 2, 2 (16S, 23S) CC tRNAs :: 34 CC ncRNAs :: 4 CC Pseudo Genes (total) :: 92 CC Pseudo Genes (ambiguous residues) :: 0 of 92 CC Pseudo Genes (frameshifted) :: 17 of 92 CC Pseudo Genes (incomplete) :: 71 of 92 CC Pseudo Genes (internal stop) :: 12 of 92 CC Pseudo Genes (multiple problems) :: 6 of 92 CC Genome Coverage :: 164x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 164x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..38407 FT /organism="Staphylococcus sp. HMSC061F10" FT /host="Homo sapiens" FT /strain="HMSC061F10" FT /mol_type="genomic DNA" FT /isolation_source="vaginal/rectal" FT /db_xref="taxon:1715106" XX CO join(LWQD01000069.1:1..38407) // ID KV830370; SV 1; linear; genomic DNA; CON; PRO; 36342 BP. XX AC KV830370; LWQD01000000; XX PR Project:PRJNA296234; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Staphylococcus sp. HMSC061F10 genomic scaffold Scaffold244, whole genome DE shotgun sequence. XX KW . XX OS Staphylococcus sp. HMSC061F10 OC Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcaceae; OC Staphylococcus. XX RN [1] RP 1-36342 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (25-MAR-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; 08845a7dffd1784c4e6af423a39813c8. DR ENA; LWQD01000000; SET. DR ENA; LWQD00000000; SET. DR BioSample; SAMN04498612. XX CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 04/22/2016 17:47:28 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 2,375 CC CDS (total) :: 2,333 CC Genes (coding) :: 2,241 CC CDS (coding) :: 2,241 CC Genes (RNA) :: 42 CC rRNAs :: 2, 2 (16S, 23S) CC partial rRNAs :: 2, 2 (16S, 23S) CC tRNAs :: 34 CC ncRNAs :: 4 CC Pseudo Genes (total) :: 92 CC Pseudo Genes (ambiguous residues) :: 0 of 92 CC Pseudo Genes (frameshifted) :: 17 of 92 CC Pseudo Genes (incomplete) :: 71 of 92 CC Pseudo Genes (internal stop) :: 12 of 92 CC Pseudo Genes (multiple problems) :: 6 of 92 CC Genome Coverage :: 164x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 164x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..36342 FT /organism="Staphylococcus sp. HMSC061F10" FT /host="Homo sapiens" FT /strain="HMSC061F10" FT /mol_type="genomic DNA" FT /isolation_source="vaginal/rectal" FT /db_xref="taxon:1715106" XX CO join(LWQD01000070.1:1..36342) // ID KV830371; SV 1; linear; genomic DNA; CON; PRO; 148783 BP. XX AC KV830371; LWQD01000000; XX PR Project:PRJNA296234; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Staphylococcus sp. HMSC061F10 genomic scaffold Scaffold248, whole genome DE shotgun sequence. XX KW . XX OS Staphylococcus sp. HMSC061F10 OC Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcaceae; OC Staphylococcus. XX RN [1] RP 1-148783 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (25-MAR-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; 38f39810b5a16151de66197cb0409001. DR ENA; LWQD01000000; SET. DR ENA; LWQD00000000; SET. DR BioSample; SAMN04498612. XX CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 04/22/2016 17:47:28 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 2,375 CC CDS (total) :: 2,333 CC Genes (coding) :: 2,241 CC CDS (coding) :: 2,241 CC Genes (RNA) :: 42 CC rRNAs :: 2, 2 (16S, 23S) CC partial rRNAs :: 2, 2 (16S, 23S) CC tRNAs :: 34 CC ncRNAs :: 4 CC Pseudo Genes (total) :: 92 CC Pseudo Genes (ambiguous residues) :: 0 of 92 CC Pseudo Genes (frameshifted) :: 17 of 92 CC Pseudo Genes (incomplete) :: 71 of 92 CC Pseudo Genes (internal stop) :: 12 of 92 CC Pseudo Genes (multiple problems) :: 6 of 92 CC Genome Coverage :: 164x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 164x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..148783 FT /organism="Staphylococcus sp. HMSC061F10" FT /host="Homo sapiens" FT /strain="HMSC061F10" FT /mol_type="genomic DNA" FT /isolation_source="vaginal/rectal" FT /db_xref="taxon:1715106" FT assembly_gap 82155..82254 FT /estimated_length=unknown FT /gap_type="within scaffold" FT /linkage_evidence="paired-ends" XX CO join(LWQD01000071.1:1..82154,gap(unk100),LWQD01000072.1:1..66529) // ID KV830372; SV 1; linear; genomic DNA; CON; PRO; 24510 BP. XX AC KV830372; LWQD01000000; XX PR Project:PRJNA296234; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Staphylococcus sp. HMSC061F10 genomic scaffold Scaffold250, whole genome DE shotgun sequence. XX KW . XX OS Staphylococcus sp. HMSC061F10 OC Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcaceae; OC Staphylococcus. XX RN [1] RP 1-24510 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (25-MAR-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; 84ea9eae5accf767a804f41e9be3a8a4. DR ENA; LWQD01000000; SET. DR ENA; LWQD00000000; SET. DR BioSample; SAMN04498612. XX CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 04/22/2016 17:47:28 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 2,375 CC CDS (total) :: 2,333 CC Genes (coding) :: 2,241 CC CDS (coding) :: 2,241 CC Genes (RNA) :: 42 CC rRNAs :: 2, 2 (16S, 23S) CC partial rRNAs :: 2, 2 (16S, 23S) CC tRNAs :: 34 CC ncRNAs :: 4 CC Pseudo Genes (total) :: 92 CC Pseudo Genes (ambiguous residues) :: 0 of 92 CC Pseudo Genes (frameshifted) :: 17 of 92 CC Pseudo Genes (incomplete) :: 71 of 92 CC Pseudo Genes (internal stop) :: 12 of 92 CC Pseudo Genes (multiple problems) :: 6 of 92 CC Genome Coverage :: 164x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 164x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..24510 FT /organism="Staphylococcus sp. HMSC061F10" FT /host="Homo sapiens" FT /strain="HMSC061F10" FT /mol_type="genomic DNA" FT /isolation_source="vaginal/rectal" FT /db_xref="taxon:1715106" XX CO join(LWQD01000073.1:1..24510) // ID KV830373; SV 1; linear; genomic DNA; CON; PRO; 247 BP. XX AC KV830373; LWQD01000000; XX PR Project:PRJNA296234; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Staphylococcus sp. HMSC061F10 genomic scaffold Scaffold251, whole genome DE shotgun sequence. XX KW . XX OS Staphylococcus sp. HMSC061F10 OC Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcaceae; OC Staphylococcus. XX RN [1] RP 1-247 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (25-MAR-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; 9dd8286b53b1a9b4050729da88d3896d. DR ENA; LWQD01000000; SET. DR ENA; LWQD00000000; SET. DR BioSample; SAMN04498612. XX CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 04/22/2016 17:47:28 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 2,375 CC CDS (total) :: 2,333 CC Genes (coding) :: 2,241 CC CDS (coding) :: 2,241 CC Genes (RNA) :: 42 CC rRNAs :: 2, 2 (16S, 23S) CC partial rRNAs :: 2, 2 (16S, 23S) CC tRNAs :: 34 CC ncRNAs :: 4 CC Pseudo Genes (total) :: 92 CC Pseudo Genes (ambiguous residues) :: 0 of 92 CC Pseudo Genes (frameshifted) :: 17 of 92 CC Pseudo Genes (incomplete) :: 71 of 92 CC Pseudo Genes (internal stop) :: 12 of 92 CC Pseudo Genes (multiple problems) :: 6 of 92 CC Genome Coverage :: 164x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 164x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..247 FT /organism="Staphylococcus sp. HMSC061F10" FT /host="Homo sapiens" FT /strain="HMSC061F10" FT /mol_type="genomic DNA" FT /isolation_source="vaginal/rectal" FT /db_xref="taxon:1715106" XX CO join(LWQD01000074.1:1..247) // ID KV830374; SV 1; linear; genomic DNA; CON; PRO; 522 BP. XX AC KV830374; LWQD01000000; XX PR Project:PRJNA296234; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Staphylococcus sp. HMSC061F10 genomic scaffold Scaffold255, whole genome DE shotgun sequence. XX KW . XX OS Staphylococcus sp. HMSC061F10 OC Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcaceae; OC Staphylococcus. XX RN [1] RP 1-522 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (25-MAR-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; 69f2eb5066880c0b54789337093f4d7e. DR ENA; LWQD01000000; SET. DR ENA; LWQD00000000; SET. DR BioSample; SAMN04498612. XX CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 04/22/2016 17:47:28 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 2,375 CC CDS (total) :: 2,333 CC Genes (coding) :: 2,241 CC CDS (coding) :: 2,241 CC Genes (RNA) :: 42 CC rRNAs :: 2, 2 (16S, 23S) CC partial rRNAs :: 2, 2 (16S, 23S) CC tRNAs :: 34 CC ncRNAs :: 4 CC Pseudo Genes (total) :: 92 CC Pseudo Genes (ambiguous residues) :: 0 of 92 CC Pseudo Genes (frameshifted) :: 17 of 92 CC Pseudo Genes (incomplete) :: 71 of 92 CC Pseudo Genes (internal stop) :: 12 of 92 CC Pseudo Genes (multiple problems) :: 6 of 92 CC Genome Coverage :: 164x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 164x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..522 FT /organism="Staphylococcus sp. HMSC061F10" FT /host="Homo sapiens" FT /strain="HMSC061F10" FT /mol_type="genomic DNA" FT /isolation_source="vaginal/rectal" FT /db_xref="taxon:1715106" XX CO join(LWQD01000075.1:1..522) // ID KV830375; SV 1; linear; genomic DNA; CON; PRO; 20266 BP. XX AC KV830375; LWQD01000000; XX PR Project:PRJNA296234; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Staphylococcus sp. HMSC061F10 genomic scaffold Scaffold262, whole genome DE shotgun sequence. XX KW . XX OS Staphylococcus sp. HMSC061F10 OC Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcaceae; OC Staphylococcus. XX RN [1] RP 1-20266 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (25-MAR-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; 21539543ab6690126bf4c54609be19cc. DR ENA; LWQD01000000; SET. DR ENA; LWQD00000000; SET. DR BioSample; SAMN04498612. XX CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 04/22/2016 17:47:28 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 2,375 CC CDS (total) :: 2,333 CC Genes (coding) :: 2,241 CC CDS (coding) :: 2,241 CC Genes (RNA) :: 42 CC rRNAs :: 2, 2 (16S, 23S) CC partial rRNAs :: 2, 2 (16S, 23S) CC tRNAs :: 34 CC ncRNAs :: 4 CC Pseudo Genes (total) :: 92 CC Pseudo Genes (ambiguous residues) :: 0 of 92 CC Pseudo Genes (frameshifted) :: 17 of 92 CC Pseudo Genes (incomplete) :: 71 of 92 CC Pseudo Genes (internal stop) :: 12 of 92 CC Pseudo Genes (multiple problems) :: 6 of 92 CC Genome Coverage :: 164x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 164x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..20266 FT /organism="Staphylococcus sp. HMSC061F10" FT /host="Homo sapiens" FT /strain="HMSC061F10" FT /mol_type="genomic DNA" FT /isolation_source="vaginal/rectal" FT /db_xref="taxon:1715106" XX CO join(LWQD01000076.1:1..20266) // ID KV830376; SV 1; linear; genomic DNA; CON; PRO; 3079 BP. XX AC KV830376; LWQD01000000; XX PR Project:PRJNA296234; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Staphylococcus sp. HMSC061F10 genomic scaffold Scaffold263, whole genome DE shotgun sequence. XX KW . XX OS Staphylococcus sp. HMSC061F10 OC Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcaceae; OC Staphylococcus. XX RN [1] RP 1-3079 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (25-MAR-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; 90d65aed6cc20c09d0c41a57a764115e. DR ENA; LWQD01000000; SET. DR ENA; LWQD00000000; SET. DR BioSample; SAMN04498612. XX CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 04/22/2016 17:47:28 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 2,375 CC CDS (total) :: 2,333 CC Genes (coding) :: 2,241 CC CDS (coding) :: 2,241 CC Genes (RNA) :: 42 CC rRNAs :: 2, 2 (16S, 23S) CC partial rRNAs :: 2, 2 (16S, 23S) CC tRNAs :: 34 CC ncRNAs :: 4 CC Pseudo Genes (total) :: 92 CC Pseudo Genes (ambiguous residues) :: 0 of 92 CC Pseudo Genes (frameshifted) :: 17 of 92 CC Pseudo Genes (incomplete) :: 71 of 92 CC Pseudo Genes (internal stop) :: 12 of 92 CC Pseudo Genes (multiple problems) :: 6 of 92 CC Genome Coverage :: 164x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 164x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..3079 FT /organism="Staphylococcus sp. HMSC061F10" FT /host="Homo sapiens" FT /strain="HMSC061F10" FT /mol_type="genomic DNA" FT /isolation_source="vaginal/rectal" FT /db_xref="taxon:1715106" XX CO join(LWQD01000077.1:1..3079) // ID KV830377; SV 1; linear; genomic DNA; CON; PRO; 823 BP. XX AC KV830377; LWQD01000000; XX PR Project:PRJNA296234; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Staphylococcus sp. HMSC061F10 genomic scaffold Scaffold27, whole genome DE shotgun sequence. XX KW . XX OS Staphylococcus sp. HMSC061F10 OC Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcaceae; OC Staphylococcus. XX RN [1] RP 1-823 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (25-MAR-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; 9468ee5eed1c021209d89eb496f99b6f. DR ENA; LWQD01000000; SET. DR ENA; LWQD00000000; SET. DR BioSample; SAMN04498612. XX CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 04/22/2016 17:47:28 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 2,375 CC CDS (total) :: 2,333 CC Genes (coding) :: 2,241 CC CDS (coding) :: 2,241 CC Genes (RNA) :: 42 CC rRNAs :: 2, 2 (16S, 23S) CC partial rRNAs :: 2, 2 (16S, 23S) CC tRNAs :: 34 CC ncRNAs :: 4 CC Pseudo Genes (total) :: 92 CC Pseudo Genes (ambiguous residues) :: 0 of 92 CC Pseudo Genes (frameshifted) :: 17 of 92 CC Pseudo Genes (incomplete) :: 71 of 92 CC Pseudo Genes (internal stop) :: 12 of 92 CC Pseudo Genes (multiple problems) :: 6 of 92 CC Genome Coverage :: 164x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 164x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..823 FT /organism="Staphylococcus sp. HMSC061F10" FT /host="Homo sapiens" FT /strain="HMSC061F10" FT /mol_type="genomic DNA" FT /isolation_source="vaginal/rectal" FT /db_xref="taxon:1715106" XX CO join(LWQD01000078.1:1..823) // ID KV830378; SV 1; linear; genomic DNA; CON; PRO; 1252 BP. XX AC KV830378; LWQD01000000; XX PR Project:PRJNA296234; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Staphylococcus sp. HMSC061F10 genomic scaffold Scaffold271, whole genome DE shotgun sequence. XX KW . XX OS Staphylococcus sp. HMSC061F10 OC Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcaceae; OC Staphylococcus. XX RN [1] RP 1-1252 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (25-MAR-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; 25fc74884491e3e2c745858ec7085928. DR ENA; LWQD01000000; SET. DR ENA; LWQD00000000; SET. DR BioSample; SAMN04498612. XX CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 04/22/2016 17:47:28 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 2,375 CC CDS (total) :: 2,333 CC Genes (coding) :: 2,241 CC CDS (coding) :: 2,241 CC Genes (RNA) :: 42 CC rRNAs :: 2, 2 (16S, 23S) CC partial rRNAs :: 2, 2 (16S, 23S) CC tRNAs :: 34 CC ncRNAs :: 4 CC Pseudo Genes (total) :: 92 CC Pseudo Genes (ambiguous residues) :: 0 of 92 CC Pseudo Genes (frameshifted) :: 17 of 92 CC Pseudo Genes (incomplete) :: 71 of 92 CC Pseudo Genes (internal stop) :: 12 of 92 CC Pseudo Genes (multiple problems) :: 6 of 92 CC Genome Coverage :: 164x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 164x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..1252 FT /organism="Staphylococcus sp. HMSC061F10" FT /host="Homo sapiens" FT /strain="HMSC061F10" FT /mol_type="genomic DNA" FT /isolation_source="vaginal/rectal" FT /db_xref="taxon:1715106" XX CO join(LWQD01000079.1:1..1252) // ID KV830379; SV 1; linear; genomic DNA; CON; PRO; 4865 BP. XX AC KV830379; LWQD01000000; XX PR Project:PRJNA296234; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Staphylococcus sp. HMSC061F10 genomic scaffold Scaffold272, whole genome DE shotgun sequence. XX KW . XX OS Staphylococcus sp. HMSC061F10 OC Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcaceae; OC Staphylococcus. XX RN [1] RP 1-4865 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (25-MAR-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; 2e77c38db966336003219797ed739e2c. DR ENA; LWQD01000000; SET. DR ENA; LWQD00000000; SET. DR BioSample; SAMN04498612. XX CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 04/22/2016 17:47:28 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 2,375 CC CDS (total) :: 2,333 CC Genes (coding) :: 2,241 CC CDS (coding) :: 2,241 CC Genes (RNA) :: 42 CC rRNAs :: 2, 2 (16S, 23S) CC partial rRNAs :: 2, 2 (16S, 23S) CC tRNAs :: 34 CC ncRNAs :: 4 CC Pseudo Genes (total) :: 92 CC Pseudo Genes (ambiguous residues) :: 0 of 92 CC Pseudo Genes (frameshifted) :: 17 of 92 CC Pseudo Genes (incomplete) :: 71 of 92 CC Pseudo Genes (internal stop) :: 12 of 92 CC Pseudo Genes (multiple problems) :: 6 of 92 CC Genome Coverage :: 164x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 164x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..4865 FT /organism="Staphylococcus sp. HMSC061F10" FT /host="Homo sapiens" FT /strain="HMSC061F10" FT /mol_type="genomic DNA" FT /isolation_source="vaginal/rectal" FT /db_xref="taxon:1715106" XX CO join(LWQD01000080.1:1..4865) // ID KV830380; SV 1; linear; genomic DNA; CON; PRO; 1034 BP. XX AC KV830380; LWQD01000000; XX PR Project:PRJNA296234; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Staphylococcus sp. HMSC061F10 genomic scaffold Scaffold273, whole genome DE shotgun sequence. XX KW . XX OS Staphylococcus sp. HMSC061F10 OC Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcaceae; OC Staphylococcus. XX RN [1] RP 1-1034 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (25-MAR-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; aad10370cb6b9e87fb5768fb17c8c7ce. DR ENA; LWQD01000000; SET. DR ENA; LWQD00000000; SET. DR BioSample; SAMN04498612. XX CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 04/22/2016 17:47:28 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 2,375 CC CDS (total) :: 2,333 CC Genes (coding) :: 2,241 CC CDS (coding) :: 2,241 CC Genes (RNA) :: 42 CC rRNAs :: 2, 2 (16S, 23S) CC partial rRNAs :: 2, 2 (16S, 23S) CC tRNAs :: 34 CC ncRNAs :: 4 CC Pseudo Genes (total) :: 92 CC Pseudo Genes (ambiguous residues) :: 0 of 92 CC Pseudo Genes (frameshifted) :: 17 of 92 CC Pseudo Genes (incomplete) :: 71 of 92 CC Pseudo Genes (internal stop) :: 12 of 92 CC Pseudo Genes (multiple problems) :: 6 of 92 CC Genome Coverage :: 164x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 164x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..1034 FT /organism="Staphylococcus sp. HMSC061F10" FT /host="Homo sapiens" FT /strain="HMSC061F10" FT /mol_type="genomic DNA" FT /isolation_source="vaginal/rectal" FT /db_xref="taxon:1715106" XX CO join(LWQD01000081.1:1..1034) // ID KV830381; SV 1; linear; genomic DNA; CON; PRO; 1178 BP. XX AC KV830381; LWQD01000000; XX PR Project:PRJNA296234; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Staphylococcus sp. HMSC061F10 genomic scaffold Scaffold277, whole genome DE shotgun sequence. XX KW . XX OS Staphylococcus sp. HMSC061F10 OC Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcaceae; OC Staphylococcus. XX RN [1] RP 1-1178 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (25-MAR-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; bc226b6d55e3eb8bb2dba7c5d35506a2. DR ENA; LWQD01000000; SET. DR ENA; LWQD00000000; SET. DR BioSample; SAMN04498612. XX CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 04/22/2016 17:47:28 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 2,375 CC CDS (total) :: 2,333 CC Genes (coding) :: 2,241 CC CDS (coding) :: 2,241 CC Genes (RNA) :: 42 CC rRNAs :: 2, 2 (16S, 23S) CC partial rRNAs :: 2, 2 (16S, 23S) CC tRNAs :: 34 CC ncRNAs :: 4 CC Pseudo Genes (total) :: 92 CC Pseudo Genes (ambiguous residues) :: 0 of 92 CC Pseudo Genes (frameshifted) :: 17 of 92 CC Pseudo Genes (incomplete) :: 71 of 92 CC Pseudo Genes (internal stop) :: 12 of 92 CC Pseudo Genes (multiple problems) :: 6 of 92 CC Genome Coverage :: 164x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 164x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..1178 FT /organism="Staphylococcus sp. HMSC061F10" FT /host="Homo sapiens" FT /strain="HMSC061F10" FT /mol_type="genomic DNA" FT /isolation_source="vaginal/rectal" FT /db_xref="taxon:1715106" XX CO join(LWQD01000082.1:1..1178) // ID KV830382; SV 1; linear; genomic DNA; CON; PRO; 226 BP. XX AC KV830382; LWQD01000000; XX PR Project:PRJNA296234; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Staphylococcus sp. HMSC061F10 genomic scaffold Scaffold278, whole genome DE shotgun sequence. XX KW . XX OS Staphylococcus sp. HMSC061F10 OC Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcaceae; OC Staphylococcus. XX RN [1] RP 1-226 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (25-MAR-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; 6dea42fb66f9c91fcf3b527602830346. DR ENA; LWQD01000000; SET. DR ENA; LWQD00000000; SET. DR BioSample; SAMN04498612. XX CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 04/22/2016 17:47:28 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 2,375 CC CDS (total) :: 2,333 CC Genes (coding) :: 2,241 CC CDS (coding) :: 2,241 CC Genes (RNA) :: 42 CC rRNAs :: 2, 2 (16S, 23S) CC partial rRNAs :: 2, 2 (16S, 23S) CC tRNAs :: 34 CC ncRNAs :: 4 CC Pseudo Genes (total) :: 92 CC Pseudo Genes (ambiguous residues) :: 0 of 92 CC Pseudo Genes (frameshifted) :: 17 of 92 CC Pseudo Genes (incomplete) :: 71 of 92 CC Pseudo Genes (internal stop) :: 12 of 92 CC Pseudo Genes (multiple problems) :: 6 of 92 CC Genome Coverage :: 164x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 164x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..226 FT /organism="Staphylococcus sp. HMSC061F10" FT /host="Homo sapiens" FT /strain="HMSC061F10" FT /mol_type="genomic DNA" FT /isolation_source="vaginal/rectal" FT /db_xref="taxon:1715106" XX CO join(LWQD01000083.1:1..226) // ID KV830383; SV 1; linear; genomic DNA; CON; PRO; 13942 BP. XX AC KV830383; LWQD01000000; XX PR Project:PRJNA296234; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Staphylococcus sp. HMSC061F10 genomic scaffold Scaffold283, whole genome DE shotgun sequence. XX KW . XX OS Staphylococcus sp. HMSC061F10 OC Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcaceae; OC Staphylococcus. XX RN [1] RP 1-13942 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (25-MAR-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; 2b244b5f78aa409d456114ccf5b3e206. DR ENA; LWQD01000000; SET. DR ENA; LWQD00000000; SET. DR BioSample; SAMN04498612. XX CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 04/22/2016 17:47:28 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 2,375 CC CDS (total) :: 2,333 CC Genes (coding) :: 2,241 CC CDS (coding) :: 2,241 CC Genes (RNA) :: 42 CC rRNAs :: 2, 2 (16S, 23S) CC partial rRNAs :: 2, 2 (16S, 23S) CC tRNAs :: 34 CC ncRNAs :: 4 CC Pseudo Genes (total) :: 92 CC Pseudo Genes (ambiguous residues) :: 0 of 92 CC Pseudo Genes (frameshifted) :: 17 of 92 CC Pseudo Genes (incomplete) :: 71 of 92 CC Pseudo Genes (internal stop) :: 12 of 92 CC Pseudo Genes (multiple problems) :: 6 of 92 CC Genome Coverage :: 164x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 164x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..13942 FT /organism="Staphylococcus sp. HMSC061F10" FT /host="Homo sapiens" FT /strain="HMSC061F10" FT /mol_type="genomic DNA" FT /isolation_source="vaginal/rectal" FT /db_xref="taxon:1715106" FT assembly_gap 5533..5632 FT /estimated_length=unknown FT /gap_type="within scaffold" FT /linkage_evidence="paired-ends" XX CO join(LWQD01000084.1:1..5532,gap(unk100),LWQD01000085.1:1..8310) // ID KV830384; SV 1; linear; genomic DNA; CON; PRO; 1340 BP. XX AC KV830384; LWQD01000000; XX PR Project:PRJNA296234; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Staphylococcus sp. HMSC061F10 genomic scaffold Scaffold35, whole genome DE shotgun sequence. XX KW . XX OS Staphylococcus sp. HMSC061F10 OC Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcaceae; OC Staphylococcus. XX RN [1] RP 1-1340 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (25-MAR-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; bb65ad0f86600fc25a1dc6cef7536bf2. DR ENA; LWQD01000000; SET. DR ENA; LWQD00000000; SET. DR BioSample; SAMN04498612. XX CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 04/22/2016 17:47:28 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 2,375 CC CDS (total) :: 2,333 CC Genes (coding) :: 2,241 CC CDS (coding) :: 2,241 CC Genes (RNA) :: 42 CC rRNAs :: 2, 2 (16S, 23S) CC partial rRNAs :: 2, 2 (16S, 23S) CC tRNAs :: 34 CC ncRNAs :: 4 CC Pseudo Genes (total) :: 92 CC Pseudo Genes (ambiguous residues) :: 0 of 92 CC Pseudo Genes (frameshifted) :: 17 of 92 CC Pseudo Genes (incomplete) :: 71 of 92 CC Pseudo Genes (internal stop) :: 12 of 92 CC Pseudo Genes (multiple problems) :: 6 of 92 CC Genome Coverage :: 164x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 164x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..1340 FT /organism="Staphylococcus sp. HMSC061F10" FT /host="Homo sapiens" FT /strain="HMSC061F10" FT /mol_type="genomic DNA" FT /isolation_source="vaginal/rectal" FT /db_xref="taxon:1715106" XX CO join(LWQD01000086.1:1..1340) // ID KV830385; SV 1; linear; genomic DNA; CON; PRO; 206 BP. XX AC KV830385; LWQD01000000; XX PR Project:PRJNA296234; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Staphylococcus sp. HMSC061F10 genomic scaffold Scaffold355, whole genome DE shotgun sequence. XX KW . XX OS Staphylococcus sp. HMSC061F10 OC Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcaceae; OC Staphylococcus. XX RN [1] RP 1-206 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (25-MAR-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; 0b67507413e17dd6d432f5e251da6dda. DR ENA; LWQD01000000; SET. DR ENA; LWQD00000000; SET. DR BioSample; SAMN04498612. XX CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 04/22/2016 17:47:28 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 2,375 CC CDS (total) :: 2,333 CC Genes (coding) :: 2,241 CC CDS (coding) :: 2,241 CC Genes (RNA) :: 42 CC rRNAs :: 2, 2 (16S, 23S) CC partial rRNAs :: 2, 2 (16S, 23S) CC tRNAs :: 34 CC ncRNAs :: 4 CC Pseudo Genes (total) :: 92 CC Pseudo Genes (ambiguous residues) :: 0 of 92 CC Pseudo Genes (frameshifted) :: 17 of 92 CC Pseudo Genes (incomplete) :: 71 of 92 CC Pseudo Genes (internal stop) :: 12 of 92 CC Pseudo Genes (multiple problems) :: 6 of 92 CC Genome Coverage :: 164x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 164x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..206 FT /organism="Staphylococcus sp. HMSC061F10" FT /host="Homo sapiens" FT /strain="HMSC061F10" FT /mol_type="genomic DNA" FT /isolation_source="vaginal/rectal" FT /db_xref="taxon:1715106" XX CO join(LWQD01000087.1:1..206) // ID KV830386; SV 1; linear; genomic DNA; CON; PRO; 4527 BP. XX AC KV830386; LWQD01000000; XX PR Project:PRJNA296234; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Staphylococcus sp. HMSC061F10 genomic scaffold Scaffold359, whole genome DE shotgun sequence. XX KW . XX OS Staphylococcus sp. HMSC061F10 OC Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcaceae; OC Staphylococcus. XX RN [1] RP 1-4527 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (25-MAR-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; 3d0d703ba927708d4bf0a6778228a50d. DR ENA; LWQD01000000; SET. DR ENA; LWQD00000000; SET. DR BioSample; SAMN04498612. XX CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 04/22/2016 17:47:28 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 2,375 CC CDS (total) :: 2,333 CC Genes (coding) :: 2,241 CC CDS (coding) :: 2,241 CC Genes (RNA) :: 42 CC rRNAs :: 2, 2 (16S, 23S) CC partial rRNAs :: 2, 2 (16S, 23S) CC tRNAs :: 34 CC ncRNAs :: 4 CC Pseudo Genes (total) :: 92 CC Pseudo Genes (ambiguous residues) :: 0 of 92 CC Pseudo Genes (frameshifted) :: 17 of 92 CC Pseudo Genes (incomplete) :: 71 of 92 CC Pseudo Genes (internal stop) :: 12 of 92 CC Pseudo Genes (multiple problems) :: 6 of 92 CC Genome Coverage :: 164x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 164x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..4527 FT /organism="Staphylococcus sp. HMSC061F10" FT /host="Homo sapiens" FT /strain="HMSC061F10" FT /mol_type="genomic DNA" FT /isolation_source="vaginal/rectal" FT /db_xref="taxon:1715106" XX CO join(LWQD01000088.1:1..4527) // ID KV830387; SV 1; linear; genomic DNA; CON; PRO; 3389 BP. XX AC KV830387; LWQD01000000; XX PR Project:PRJNA296234; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Staphylococcus sp. HMSC061F10 genomic scaffold Scaffold36, whole genome DE shotgun sequence. XX KW . XX OS Staphylococcus sp. HMSC061F10 OC Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcaceae; OC Staphylococcus. XX RN [1] RP 1-3389 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (25-MAR-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; c6d2229884caca724633c0064493cecf. DR ENA; LWQD01000000; SET. DR ENA; LWQD00000000; SET. DR BioSample; SAMN04498612. XX CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 04/22/2016 17:47:28 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 2,375 CC CDS (total) :: 2,333 CC Genes (coding) :: 2,241 CC CDS (coding) :: 2,241 CC Genes (RNA) :: 42 CC rRNAs :: 2, 2 (16S, 23S) CC partial rRNAs :: 2, 2 (16S, 23S) CC tRNAs :: 34 CC ncRNAs :: 4 CC Pseudo Genes (total) :: 92 CC Pseudo Genes (ambiguous residues) :: 0 of 92 CC Pseudo Genes (frameshifted) :: 17 of 92 CC Pseudo Genes (incomplete) :: 71 of 92 CC Pseudo Genes (internal stop) :: 12 of 92 CC Pseudo Genes (multiple problems) :: 6 of 92 CC Genome Coverage :: 164x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 164x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..3389 FT /organism="Staphylococcus sp. HMSC061F10" FT /host="Homo sapiens" FT /strain="HMSC061F10" FT /mol_type="genomic DNA" FT /isolation_source="vaginal/rectal" FT /db_xref="taxon:1715106" XX CO join(LWQD01000089.1:1..3389) // ID KV830388; SV 1; linear; genomic DNA; CON; PRO; 12161 BP. XX AC KV830388; LWQD01000000; XX PR Project:PRJNA296234; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Staphylococcus sp. HMSC061F10 genomic scaffold Scaffold360, whole genome DE shotgun sequence. XX KW . XX OS Staphylococcus sp. HMSC061F10 OC Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcaceae; OC Staphylococcus. XX RN [1] RP 1-12161 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (25-MAR-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; 8747579f35ef061bc457f501cbabbfc0. DR ENA; LWQD01000000; SET. DR ENA; LWQD00000000; SET. DR BioSample; SAMN04498612. XX CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 04/22/2016 17:47:28 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 2,375 CC CDS (total) :: 2,333 CC Genes (coding) :: 2,241 CC CDS (coding) :: 2,241 CC Genes (RNA) :: 42 CC rRNAs :: 2, 2 (16S, 23S) CC partial rRNAs :: 2, 2 (16S, 23S) CC tRNAs :: 34 CC ncRNAs :: 4 CC Pseudo Genes (total) :: 92 CC Pseudo Genes (ambiguous residues) :: 0 of 92 CC Pseudo Genes (frameshifted) :: 17 of 92 CC Pseudo Genes (incomplete) :: 71 of 92 CC Pseudo Genes (internal stop) :: 12 of 92 CC Pseudo Genes (multiple problems) :: 6 of 92 CC Genome Coverage :: 164x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 164x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..12161 FT /organism="Staphylococcus sp. HMSC061F10" FT /host="Homo sapiens" FT /strain="HMSC061F10" FT /mol_type="genomic DNA" FT /isolation_source="vaginal/rectal" FT /db_xref="taxon:1715106" XX CO join(LWQD01000090.1:1..12161) // ID KV830389; SV 1; linear; genomic DNA; CON; PRO; 7533 BP. XX AC KV830389; LWQD01000000; XX PR Project:PRJNA296234; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Staphylococcus sp. HMSC061F10 genomic scaffold Scaffold361, whole genome DE shotgun sequence. XX KW . XX OS Staphylococcus sp. HMSC061F10 OC Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcaceae; OC Staphylococcus. XX RN [1] RP 1-7533 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (25-MAR-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; a7784b50da4074ce56e4acd86296e8fa. DR ENA; LWQD01000000; SET. DR ENA; LWQD00000000; SET. DR BioSample; SAMN04498612. XX CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 04/22/2016 17:47:28 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 2,375 CC CDS (total) :: 2,333 CC Genes (coding) :: 2,241 CC CDS (coding) :: 2,241 CC Genes (RNA) :: 42 CC rRNAs :: 2, 2 (16S, 23S) CC partial rRNAs :: 2, 2 (16S, 23S) CC tRNAs :: 34 CC ncRNAs :: 4 CC Pseudo Genes (total) :: 92 CC Pseudo Genes (ambiguous residues) :: 0 of 92 CC Pseudo Genes (frameshifted) :: 17 of 92 CC Pseudo Genes (incomplete) :: 71 of 92 CC Pseudo Genes (internal stop) :: 12 of 92 CC Pseudo Genes (multiple problems) :: 6 of 92 CC Genome Coverage :: 164x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 164x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..7533 FT /organism="Staphylococcus sp. HMSC061F10" FT /host="Homo sapiens" FT /strain="HMSC061F10" FT /mol_type="genomic DNA" FT /isolation_source="vaginal/rectal" FT /db_xref="taxon:1715106" XX CO join(LWQD01000091.1:1..7533) // ID KV830390; SV 1; linear; genomic DNA; CON; PRO; 6599 BP. XX AC KV830390; LWQD01000000; XX PR Project:PRJNA296234; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Staphylococcus sp. HMSC061F10 genomic scaffold Scaffold37, whole genome DE shotgun sequence. XX KW . XX OS Staphylococcus sp. HMSC061F10 OC Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcaceae; OC Staphylococcus. XX RN [1] RP 1-6599 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (25-MAR-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; 0e9f8e341fbde008010878d578bfada1. DR ENA; LWQD01000000; SET. DR ENA; LWQD00000000; SET. DR BioSample; SAMN04498612. XX CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 04/22/2016 17:47:28 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 2,375 CC CDS (total) :: 2,333 CC Genes (coding) :: 2,241 CC CDS (coding) :: 2,241 CC Genes (RNA) :: 42 CC rRNAs :: 2, 2 (16S, 23S) CC partial rRNAs :: 2, 2 (16S, 23S) CC tRNAs :: 34 CC ncRNAs :: 4 CC Pseudo Genes (total) :: 92 CC Pseudo Genes (ambiguous residues) :: 0 of 92 CC Pseudo Genes (frameshifted) :: 17 of 92 CC Pseudo Genes (incomplete) :: 71 of 92 CC Pseudo Genes (internal stop) :: 12 of 92 CC Pseudo Genes (multiple problems) :: 6 of 92 CC Genome Coverage :: 164x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 164x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..6599 FT /organism="Staphylococcus sp. HMSC061F10" FT /host="Homo sapiens" FT /strain="HMSC061F10" FT /mol_type="genomic DNA" FT /isolation_source="vaginal/rectal" FT /db_xref="taxon:1715106" XX CO join(LWQD01000092.1:1..6599) // ID KV830391; SV 1; linear; genomic DNA; CON; PRO; 319 BP. XX AC KV830391; LWQD01000000; XX PR Project:PRJNA296234; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Staphylococcus sp. HMSC061F10 genomic scaffold Scaffold371, whole genome DE shotgun sequence. XX KW . XX OS Staphylococcus sp. HMSC061F10 OC Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcaceae; OC Staphylococcus. XX RN [1] RP 1-319 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (25-MAR-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; 599c0c8f3257a351046d66811a371e2a. DR ENA; LWQD01000000; SET. DR ENA; LWQD00000000; SET. DR BioSample; SAMN04498612. XX CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 04/22/2016 17:47:28 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 2,375 CC CDS (total) :: 2,333 CC Genes (coding) :: 2,241 CC CDS (coding) :: 2,241 CC Genes (RNA) :: 42 CC rRNAs :: 2, 2 (16S, 23S) CC partial rRNAs :: 2, 2 (16S, 23S) CC tRNAs :: 34 CC ncRNAs :: 4 CC Pseudo Genes (total) :: 92 CC Pseudo Genes (ambiguous residues) :: 0 of 92 CC Pseudo Genes (frameshifted) :: 17 of 92 CC Pseudo Genes (incomplete) :: 71 of 92 CC Pseudo Genes (internal stop) :: 12 of 92 CC Pseudo Genes (multiple problems) :: 6 of 92 CC Genome Coverage :: 164x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 164x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..319 FT /organism="Staphylococcus sp. HMSC061F10" FT /host="Homo sapiens" FT /strain="HMSC061F10" FT /mol_type="genomic DNA" FT /isolation_source="vaginal/rectal" FT /db_xref="taxon:1715106" XX CO join(LWQD01000093.1:1..319) // ID KV830392; SV 1; linear; genomic DNA; CON; PRO; 4486 BP. XX AC KV830392; LWQD01000000; XX PR Project:PRJNA296234; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Staphylococcus sp. HMSC061F10 genomic scaffold Scaffold375, whole genome DE shotgun sequence. XX KW . XX OS Staphylococcus sp. HMSC061F10 OC Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcaceae; OC Staphylococcus. XX RN [1] RP 1-4486 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (25-MAR-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; 795364a032ecbba9e77bec24608b813b. DR ENA; LWQD01000000; SET. DR ENA; LWQD00000000; SET. DR BioSample; SAMN04498612. XX CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 04/22/2016 17:47:28 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 2,375 CC CDS (total) :: 2,333 CC Genes (coding) :: 2,241 CC CDS (coding) :: 2,241 CC Genes (RNA) :: 42 CC rRNAs :: 2, 2 (16S, 23S) CC partial rRNAs :: 2, 2 (16S, 23S) CC tRNAs :: 34 CC ncRNAs :: 4 CC Pseudo Genes (total) :: 92 CC Pseudo Genes (ambiguous residues) :: 0 of 92 CC Pseudo Genes (frameshifted) :: 17 of 92 CC Pseudo Genes (incomplete) :: 71 of 92 CC Pseudo Genes (internal stop) :: 12 of 92 CC Pseudo Genes (multiple problems) :: 6 of 92 CC Genome Coverage :: 164x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 164x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..4486 FT /organism="Staphylococcus sp. HMSC061F10" FT /host="Homo sapiens" FT /strain="HMSC061F10" FT /mol_type="genomic DNA" FT /isolation_source="vaginal/rectal" FT /db_xref="taxon:1715106" XX CO join(LWQD01000094.1:1..4486) // ID KV830393; SV 1; linear; genomic DNA; CON; PRO; 7132 BP. XX AC KV830393; LWQD01000000; XX PR Project:PRJNA296234; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Staphylococcus sp. HMSC061F10 genomic scaffold Scaffold38, whole genome DE shotgun sequence. XX KW . XX OS Staphylococcus sp. HMSC061F10 OC Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcaceae; OC Staphylococcus. XX RN [1] RP 1-7132 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (25-MAR-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; ef22ccd988b47d7b8e3b8fa67823e036. DR ENA; LWQD01000000; SET. DR ENA; LWQD00000000; SET. DR BioSample; SAMN04498612. XX CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 04/22/2016 17:47:28 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 2,375 CC CDS (total) :: 2,333 CC Genes (coding) :: 2,241 CC CDS (coding) :: 2,241 CC Genes (RNA) :: 42 CC rRNAs :: 2, 2 (16S, 23S) CC partial rRNAs :: 2, 2 (16S, 23S) CC tRNAs :: 34 CC ncRNAs :: 4 CC Pseudo Genes (total) :: 92 CC Pseudo Genes (ambiguous residues) :: 0 of 92 CC Pseudo Genes (frameshifted) :: 17 of 92 CC Pseudo Genes (incomplete) :: 71 of 92 CC Pseudo Genes (internal stop) :: 12 of 92 CC Pseudo Genes (multiple problems) :: 6 of 92 CC Genome Coverage :: 164x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 164x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..7132 FT /organism="Staphylococcus sp. HMSC061F10" FT /host="Homo sapiens" FT /strain="HMSC061F10" FT /mol_type="genomic DNA" FT /isolation_source="vaginal/rectal" FT /db_xref="taxon:1715106" XX CO join(LWQD01000095.1:1..7132) // ID KV830394; SV 1; linear; genomic DNA; CON; PRO; 419 BP. XX AC KV830394; LWQD01000000; XX PR Project:PRJNA296234; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Staphylococcus sp. HMSC061F10 genomic scaffold Scaffold390, whole genome DE shotgun sequence. XX KW . XX OS Staphylococcus sp. HMSC061F10 OC Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcaceae; OC Staphylococcus. XX RN [1] RP 1-419 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (25-MAR-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; 0819b61521d417ff57fc3b8ab1659c8c. DR ENA; LWQD01000000; SET. DR ENA; LWQD00000000; SET. DR BioSample; SAMN04498612. XX CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 04/22/2016 17:47:28 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 2,375 CC CDS (total) :: 2,333 CC Genes (coding) :: 2,241 CC CDS (coding) :: 2,241 CC Genes (RNA) :: 42 CC rRNAs :: 2, 2 (16S, 23S) CC partial rRNAs :: 2, 2 (16S, 23S) CC tRNAs :: 34 CC ncRNAs :: 4 CC Pseudo Genes (total) :: 92 CC Pseudo Genes (ambiguous residues) :: 0 of 92 CC Pseudo Genes (frameshifted) :: 17 of 92 CC Pseudo Genes (incomplete) :: 71 of 92 CC Pseudo Genes (internal stop) :: 12 of 92 CC Pseudo Genes (multiple problems) :: 6 of 92 CC Genome Coverage :: 164x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 164x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..419 FT /organism="Staphylococcus sp. HMSC061F10" FT /host="Homo sapiens" FT /strain="HMSC061F10" FT /mol_type="genomic DNA" FT /isolation_source="vaginal/rectal" FT /db_xref="taxon:1715106" XX CO join(LWQD01000096.1:1..419) // ID KV830395; SV 1; linear; genomic DNA; CON; PRO; 282407 BP. XX AC KV830395; LWQD01000000; XX PR Project:PRJNA296234; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Staphylococcus sp. HMSC061F10 genomic scaffold Scaffold394, whole genome DE shotgun sequence. XX KW . XX OS Staphylococcus sp. HMSC061F10 OC Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcaceae; OC Staphylococcus. XX RN [1] RP 1-282407 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (25-MAR-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; 235cd8f7683d80b955f7d539f80e24ac. DR ENA; LWQD01000000; SET. DR ENA; LWQD00000000; SET. DR BioSample; SAMN04498612. XX CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 04/22/2016 17:47:28 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 2,375 CC CDS (total) :: 2,333 CC Genes (coding) :: 2,241 CC CDS (coding) :: 2,241 CC Genes (RNA) :: 42 CC rRNAs :: 2, 2 (16S, 23S) CC partial rRNAs :: 2, 2 (16S, 23S) CC tRNAs :: 34 CC ncRNAs :: 4 CC Pseudo Genes (total) :: 92 CC Pseudo Genes (ambiguous residues) :: 0 of 92 CC Pseudo Genes (frameshifted) :: 17 of 92 CC Pseudo Genes (incomplete) :: 71 of 92 CC Pseudo Genes (internal stop) :: 12 of 92 CC Pseudo Genes (multiple problems) :: 6 of 92 CC Genome Coverage :: 164x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 164x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..282407 FT /organism="Staphylococcus sp. HMSC061F10" FT /host="Homo sapiens" FT /strain="HMSC061F10" FT /mol_type="genomic DNA" FT /isolation_source="vaginal/rectal" FT /db_xref="taxon:1715106" FT assembly_gap 15917..16016 FT /estimated_length=unknown FT /gap_type="within scaffold" FT /linkage_evidence="paired-ends" FT assembly_gap 58456..58555 FT /estimated_length=unknown FT /gap_type="within scaffold" FT /linkage_evidence="paired-ends" FT assembly_gap 83185..83284 FT /estimated_length=unknown FT /gap_type="within scaffold" FT /linkage_evidence="paired-ends" FT assembly_gap 217908..218007 FT /estimated_length=unknown FT /gap_type="within scaffold" FT /linkage_evidence="paired-ends" FT assembly_gap 244799..244898 FT /estimated_length=unknown FT /gap_type="within scaffold" FT /linkage_evidence="paired-ends" XX CO join(LWQD01000097.1:1..15916,gap(unk100),LWQD01000098.1:1..42439, CO gap(unk100),LWQD01000099.1:1..24629,gap(unk100),LWQD01000100.1:1..134623, CO gap(unk100),LWQD01000101.1:1..26791,gap(unk100),LWQD01000102.1:1..37509) // ID KV830396; SV 1; linear; genomic DNA; CON; PRO; 30309 BP. XX AC KV830396; LWQD01000000; XX PR Project:PRJNA296234; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Staphylococcus sp. HMSC061F10 genomic scaffold Scaffold403, whole genome DE shotgun sequence. XX KW . XX OS Staphylococcus sp. HMSC061F10 OC Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcaceae; OC Staphylococcus. XX RN [1] RP 1-30309 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (25-MAR-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; 25ed62c44950280d5c3885d8fc725f2c. DR ENA; LWQD01000000; SET. DR ENA; LWQD00000000; SET. DR BioSample; SAMN04498612. XX CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 04/22/2016 17:47:28 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 2,375 CC CDS (total) :: 2,333 CC Genes (coding) :: 2,241 CC CDS (coding) :: 2,241 CC Genes (RNA) :: 42 CC rRNAs :: 2, 2 (16S, 23S) CC partial rRNAs :: 2, 2 (16S, 23S) CC tRNAs :: 34 CC ncRNAs :: 4 CC Pseudo Genes (total) :: 92 CC Pseudo Genes (ambiguous residues) :: 0 of 92 CC Pseudo Genes (frameshifted) :: 17 of 92 CC Pseudo Genes (incomplete) :: 71 of 92 CC Pseudo Genes (internal stop) :: 12 of 92 CC Pseudo Genes (multiple problems) :: 6 of 92 CC Genome Coverage :: 164x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 164x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..30309 FT /organism="Staphylococcus sp. HMSC061F10" FT /host="Homo sapiens" FT /strain="HMSC061F10" FT /mol_type="genomic DNA" FT /isolation_source="vaginal/rectal" FT /db_xref="taxon:1715106" XX CO join(LWQD01000103.1:1..30309) // ID KV830397; SV 1; linear; genomic DNA; CON; PRO; 376 BP. XX AC KV830397; LWQD01000000; XX PR Project:PRJNA296234; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Staphylococcus sp. HMSC061F10 genomic scaffold Scaffold404, whole genome DE shotgun sequence. XX KW . XX OS Staphylococcus sp. HMSC061F10 OC Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcaceae; OC Staphylococcus. XX RN [1] RP 1-376 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (25-MAR-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; c364bbee44633f91db5bcba78b9ecb85. DR ENA; LWQD01000000; SET. DR ENA; LWQD00000000; SET. DR BioSample; SAMN04498612. XX CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 04/22/2016 17:47:28 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 2,375 CC CDS (total) :: 2,333 CC Genes (coding) :: 2,241 CC CDS (coding) :: 2,241 CC Genes (RNA) :: 42 CC rRNAs :: 2, 2 (16S, 23S) CC partial rRNAs :: 2, 2 (16S, 23S) CC tRNAs :: 34 CC ncRNAs :: 4 CC Pseudo Genes (total) :: 92 CC Pseudo Genes (ambiguous residues) :: 0 of 92 CC Pseudo Genes (frameshifted) :: 17 of 92 CC Pseudo Genes (incomplete) :: 71 of 92 CC Pseudo Genes (internal stop) :: 12 of 92 CC Pseudo Genes (multiple problems) :: 6 of 92 CC Genome Coverage :: 164x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 164x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..376 FT /organism="Staphylococcus sp. HMSC061F10" FT /host="Homo sapiens" FT /strain="HMSC061F10" FT /mol_type="genomic DNA" FT /isolation_source="vaginal/rectal" FT /db_xref="taxon:1715106" XX CO join(LWQD01000104.1:1..376) // ID KV830398; SV 1; linear; genomic DNA; CON; PRO; 5766 BP. XX AC KV830398; LWQD01000000; XX PR Project:PRJNA296234; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Staphylococcus sp. HMSC061F10 genomic scaffold Scaffold408, whole genome DE shotgun sequence. XX KW . XX OS Staphylococcus sp. HMSC061F10 OC Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcaceae; OC Staphylococcus. XX RN [1] RP 1-5766 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (25-MAR-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; 097408644fded825c5641cc4b956199d. DR ENA; LWQD01000000; SET. DR ENA; LWQD00000000; SET. DR BioSample; SAMN04498612. XX CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 04/22/2016 17:47:28 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 2,375 CC CDS (total) :: 2,333 CC Genes (coding) :: 2,241 CC CDS (coding) :: 2,241 CC Genes (RNA) :: 42 CC rRNAs :: 2, 2 (16S, 23S) CC partial rRNAs :: 2, 2 (16S, 23S) CC tRNAs :: 34 CC ncRNAs :: 4 CC Pseudo Genes (total) :: 92 CC Pseudo Genes (ambiguous residues) :: 0 of 92 CC Pseudo Genes (frameshifted) :: 17 of 92 CC Pseudo Genes (incomplete) :: 71 of 92 CC Pseudo Genes (internal stop) :: 12 of 92 CC Pseudo Genes (multiple problems) :: 6 of 92 CC Genome Coverage :: 164x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 164x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..5766 FT /organism="Staphylococcus sp. HMSC061F10" FT /host="Homo sapiens" FT /strain="HMSC061F10" FT /mol_type="genomic DNA" FT /isolation_source="vaginal/rectal" FT /db_xref="taxon:1715106" XX CO join(LWQD01000105.1:1..5766) // ID KV830399; SV 1; linear; genomic DNA; CON; PRO; 425 BP. XX AC KV830399; LWQD01000000; XX PR Project:PRJNA296234; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Staphylococcus sp. HMSC061F10 genomic scaffold Scaffold41, whole genome DE shotgun sequence. XX KW . XX OS Staphylococcus sp. HMSC061F10 OC Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcaceae; OC Staphylococcus. XX RN [1] RP 1-425 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (25-MAR-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; 03aaab74bfa60bef3f9c76f53bee5f0c. DR ENA; LWQD01000000; SET. DR ENA; LWQD00000000; SET. DR BioSample; SAMN04498612. XX CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 04/22/2016 17:47:28 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 2,375 CC CDS (total) :: 2,333 CC Genes (coding) :: 2,241 CC CDS (coding) :: 2,241 CC Genes (RNA) :: 42 CC rRNAs :: 2, 2 (16S, 23S) CC partial rRNAs :: 2, 2 (16S, 23S) CC tRNAs :: 34 CC ncRNAs :: 4 CC Pseudo Genes (total) :: 92 CC Pseudo Genes (ambiguous residues) :: 0 of 92 CC Pseudo Genes (frameshifted) :: 17 of 92 CC Pseudo Genes (incomplete) :: 71 of 92 CC Pseudo Genes (internal stop) :: 12 of 92 CC Pseudo Genes (multiple problems) :: 6 of 92 CC Genome Coverage :: 164x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 164x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..425 FT /organism="Staphylococcus sp. HMSC061F10" FT /host="Homo sapiens" FT /strain="HMSC061F10" FT /mol_type="genomic DNA" FT /isolation_source="vaginal/rectal" FT /db_xref="taxon:1715106" XX CO join(LWQD01000106.1:1..425) // ID KV830400; SV 1; linear; genomic DNA; CON; PRO; 1520 BP. XX AC KV830400; LWQD01000000; XX PR Project:PRJNA296234; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Staphylococcus sp. HMSC061F10 genomic scaffold Scaffold42, whole genome DE shotgun sequence. XX KW . XX OS Staphylococcus sp. HMSC061F10 OC Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcaceae; OC Staphylococcus. XX RN [1] RP 1-1520 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (25-MAR-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; 6509186f9f12a343602f4bdee1bc54d4. DR ENA; LWQD01000000; SET. DR ENA; LWQD00000000; SET. DR BioSample; SAMN04498612. XX CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 04/22/2016 17:47:28 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 2,375 CC CDS (total) :: 2,333 CC Genes (coding) :: 2,241 CC CDS (coding) :: 2,241 CC Genes (RNA) :: 42 CC rRNAs :: 2, 2 (16S, 23S) CC partial rRNAs :: 2, 2 (16S, 23S) CC tRNAs :: 34 CC ncRNAs :: 4 CC Pseudo Genes (total) :: 92 CC Pseudo Genes (ambiguous residues) :: 0 of 92 CC Pseudo Genes (frameshifted) :: 17 of 92 CC Pseudo Genes (incomplete) :: 71 of 92 CC Pseudo Genes (internal stop) :: 12 of 92 CC Pseudo Genes (multiple problems) :: 6 of 92 CC Genome Coverage :: 164x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 164x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..1520 FT /organism="Staphylococcus sp. HMSC061F10" FT /host="Homo sapiens" FT /strain="HMSC061F10" FT /mol_type="genomic DNA" FT /isolation_source="vaginal/rectal" FT /db_xref="taxon:1715106" XX CO join(LWQD01000107.1:1..1520) // ID KV830401; SV 1; linear; genomic DNA; CON; PRO; 87511 BP. XX AC KV830401; LWQD01000000; XX PR Project:PRJNA296234; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Staphylococcus sp. HMSC061F10 genomic scaffold Scaffold43, whole genome DE shotgun sequence. XX KW . XX OS Staphylococcus sp. HMSC061F10 OC Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcaceae; OC Staphylococcus. XX RN [1] RP 1-87511 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (25-MAR-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; 94c8d3dbf0d6771b834f6d48bc5dd522. DR ENA; LWQD01000000; SET. DR ENA; LWQD00000000; SET. DR BioSample; SAMN04498612. XX CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 04/22/2016 17:47:28 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 2,375 CC CDS (total) :: 2,333 CC Genes (coding) :: 2,241 CC CDS (coding) :: 2,241 CC Genes (RNA) :: 42 CC rRNAs :: 2, 2 (16S, 23S) CC partial rRNAs :: 2, 2 (16S, 23S) CC tRNAs :: 34 CC ncRNAs :: 4 CC Pseudo Genes (total) :: 92 CC Pseudo Genes (ambiguous residues) :: 0 of 92 CC Pseudo Genes (frameshifted) :: 17 of 92 CC Pseudo Genes (incomplete) :: 71 of 92 CC Pseudo Genes (internal stop) :: 12 of 92 CC Pseudo Genes (multiple problems) :: 6 of 92 CC Genome Coverage :: 164x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 164x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..87511 FT /organism="Staphylococcus sp. HMSC061F10" FT /host="Homo sapiens" FT /strain="HMSC061F10" FT /mol_type="genomic DNA" FT /isolation_source="vaginal/rectal" FT /db_xref="taxon:1715106" XX CO join(LWQD01000108.1:1..87511) // ID KV830402; SV 1; linear; genomic DNA; CON; PRO; 1039 BP. XX AC KV830402; LWQD01000000; XX PR Project:PRJNA296234; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Staphylococcus sp. HMSC061F10 genomic scaffold Scaffold44, whole genome DE shotgun sequence. XX KW . XX OS Staphylococcus sp. HMSC061F10 OC Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcaceae; OC Staphylococcus. XX RN [1] RP 1-1039 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (25-MAR-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; c3742193da25a016d4ee365b753e6b36. DR ENA; LWQD01000000; SET. DR ENA; LWQD00000000; SET. DR BioSample; SAMN04498612. XX CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 04/22/2016 17:47:28 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 2,375 CC CDS (total) :: 2,333 CC Genes (coding) :: 2,241 CC CDS (coding) :: 2,241 CC Genes (RNA) :: 42 CC rRNAs :: 2, 2 (16S, 23S) CC partial rRNAs :: 2, 2 (16S, 23S) CC tRNAs :: 34 CC ncRNAs :: 4 CC Pseudo Genes (total) :: 92 CC Pseudo Genes (ambiguous residues) :: 0 of 92 CC Pseudo Genes (frameshifted) :: 17 of 92 CC Pseudo Genes (incomplete) :: 71 of 92 CC Pseudo Genes (internal stop) :: 12 of 92 CC Pseudo Genes (multiple problems) :: 6 of 92 CC Genome Coverage :: 164x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 164x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..1039 FT /organism="Staphylococcus sp. HMSC061F10" FT /host="Homo sapiens" FT /strain="HMSC061F10" FT /mol_type="genomic DNA" FT /isolation_source="vaginal/rectal" FT /db_xref="taxon:1715106" XX CO join(LWQD01000109.1:1..1039) // ID KV830403; SV 1; linear; genomic DNA; CON; PRO; 1299 BP. XX AC KV830403; LWQD01000000; XX PR Project:PRJNA296234; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Staphylococcus sp. HMSC061F10 genomic scaffold Scaffold445, whole genome DE shotgun sequence. XX KW . XX OS Staphylococcus sp. HMSC061F10 OC Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcaceae; OC Staphylococcus. XX RN [1] RP 1-1299 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (25-MAR-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; bc2e5483f2a3e9e438d7512c619f8c03. DR ENA; LWQD01000000; SET. DR ENA; LWQD00000000; SET. DR BioSample; SAMN04498612. XX CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 04/22/2016 17:47:28 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 2,375 CC CDS (total) :: 2,333 CC Genes (coding) :: 2,241 CC CDS (coding) :: 2,241 CC Genes (RNA) :: 42 CC rRNAs :: 2, 2 (16S, 23S) CC partial rRNAs :: 2, 2 (16S, 23S) CC tRNAs :: 34 CC ncRNAs :: 4 CC Pseudo Genes (total) :: 92 CC Pseudo Genes (ambiguous residues) :: 0 of 92 CC Pseudo Genes (frameshifted) :: 17 of 92 CC Pseudo Genes (incomplete) :: 71 of 92 CC Pseudo Genes (internal stop) :: 12 of 92 CC Pseudo Genes (multiple problems) :: 6 of 92 CC Genome Coverage :: 164x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 164x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..1299 FT /organism="Staphylococcus sp. HMSC061F10" FT /host="Homo sapiens" FT /strain="HMSC061F10" FT /mol_type="genomic DNA" FT /isolation_source="vaginal/rectal" FT /db_xref="taxon:1715106" XX CO join(LWQD01000110.1:1..1299) // ID KV830404; SV 1; linear; genomic DNA; CON; PRO; 842 BP. XX AC KV830404; LWQD01000000; XX PR Project:PRJNA296234; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Staphylococcus sp. HMSC061F10 genomic scaffold Scaffold45, whole genome DE shotgun sequence. XX KW . XX OS Staphylococcus sp. HMSC061F10 OC Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcaceae; OC Staphylococcus. XX RN [1] RP 1-842 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (25-MAR-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; 8dfdd947a371b767073bf4b51c1d581d. DR ENA; LWQD01000000; SET. DR ENA; LWQD00000000; SET. DR BioSample; SAMN04498612. XX CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 04/22/2016 17:47:28 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 2,375 CC CDS (total) :: 2,333 CC Genes (coding) :: 2,241 CC CDS (coding) :: 2,241 CC Genes (RNA) :: 42 CC rRNAs :: 2, 2 (16S, 23S) CC partial rRNAs :: 2, 2 (16S, 23S) CC tRNAs :: 34 CC ncRNAs :: 4 CC Pseudo Genes (total) :: 92 CC Pseudo Genes (ambiguous residues) :: 0 of 92 CC Pseudo Genes (frameshifted) :: 17 of 92 CC Pseudo Genes (incomplete) :: 71 of 92 CC Pseudo Genes (internal stop) :: 12 of 92 CC Pseudo Genes (multiple problems) :: 6 of 92 CC Genome Coverage :: 164x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 164x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..842 FT /organism="Staphylococcus sp. HMSC061F10" FT /host="Homo sapiens" FT /strain="HMSC061F10" FT /mol_type="genomic DNA" FT /isolation_source="vaginal/rectal" FT /db_xref="taxon:1715106" XX CO join(LWQD01000111.1:1..842) // ID KV830405; SV 1; linear; genomic DNA; CON; PRO; 35913 BP. XX AC KV830405; LWQD01000000; XX PR Project:PRJNA296234; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Staphylococcus sp. HMSC061F10 genomic scaffold Scaffold464, whole genome DE shotgun sequence. XX KW . XX OS Staphylococcus sp. HMSC061F10 OC Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcaceae; OC Staphylococcus. XX RN [1] RP 1-35913 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (25-MAR-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; 0c53258f83e76dfc2d7be7355551053d. DR ENA; LWQD01000000; SET. DR ENA; LWQD00000000; SET. DR BioSample; SAMN04498612. XX CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 04/22/2016 17:47:28 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 2,375 CC CDS (total) :: 2,333 CC Genes (coding) :: 2,241 CC CDS (coding) :: 2,241 CC Genes (RNA) :: 42 CC rRNAs :: 2, 2 (16S, 23S) CC partial rRNAs :: 2, 2 (16S, 23S) CC tRNAs :: 34 CC ncRNAs :: 4 CC Pseudo Genes (total) :: 92 CC Pseudo Genes (ambiguous residues) :: 0 of 92 CC Pseudo Genes (frameshifted) :: 17 of 92 CC Pseudo Genes (incomplete) :: 71 of 92 CC Pseudo Genes (internal stop) :: 12 of 92 CC Pseudo Genes (multiple problems) :: 6 of 92 CC Genome Coverage :: 164x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 164x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..35913 FT /organism="Staphylococcus sp. HMSC061F10" FT /host="Homo sapiens" FT /strain="HMSC061F10" FT /mol_type="genomic DNA" FT /isolation_source="vaginal/rectal" FT /db_xref="taxon:1715106" XX CO join(LWQD01000112.1:1..35913) // ID KV830406; SV 1; linear; genomic DNA; CON; PRO; 613 BP. XX AC KV830406; LWQD01000000; XX PR Project:PRJNA296234; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Staphylococcus sp. HMSC061F10 genomic scaffold Scaffold465, whole genome DE shotgun sequence. XX KW . XX OS Staphylococcus sp. HMSC061F10 OC Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcaceae; OC Staphylococcus. XX RN [1] RP 1-613 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (25-MAR-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; 32f42aed73d9872b126049ca9b27f856. DR ENA; LWQD01000000; SET. DR ENA; LWQD00000000; SET. DR BioSample; SAMN04498612. XX CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 04/22/2016 17:47:28 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 2,375 CC CDS (total) :: 2,333 CC Genes (coding) :: 2,241 CC CDS (coding) :: 2,241 CC Genes (RNA) :: 42 CC rRNAs :: 2, 2 (16S, 23S) CC partial rRNAs :: 2, 2 (16S, 23S) CC tRNAs :: 34 CC ncRNAs :: 4 CC Pseudo Genes (total) :: 92 CC Pseudo Genes (ambiguous residues) :: 0 of 92 CC Pseudo Genes (frameshifted) :: 17 of 92 CC Pseudo Genes (incomplete) :: 71 of 92 CC Pseudo Genes (internal stop) :: 12 of 92 CC Pseudo Genes (multiple problems) :: 6 of 92 CC Genome Coverage :: 164x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 164x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..613 FT /organism="Staphylococcus sp. HMSC061F10" FT /host="Homo sapiens" FT /strain="HMSC061F10" FT /mol_type="genomic DNA" FT /isolation_source="vaginal/rectal" FT /db_xref="taxon:1715106" XX CO join(LWQD01000113.1:1..613) // ID KV830407; SV 1; linear; genomic DNA; CON; PRO; 116879 BP. XX AC KV830407; LWQD01000000; XX PR Project:PRJNA296234; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Staphylococcus sp. HMSC061F10 genomic scaffold Scaffold470, whole genome DE shotgun sequence. XX KW . XX OS Staphylococcus sp. HMSC061F10 OC Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcaceae; OC Staphylococcus. XX RN [1] RP 1-116879 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (25-MAR-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; 8d19f03989d8474ed3661834f55a4b3d. DR ENA; LWQD01000000; SET. DR ENA; LWQD00000000; SET. DR BioSample; SAMN04498612. XX CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 04/22/2016 17:47:28 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 2,375 CC CDS (total) :: 2,333 CC Genes (coding) :: 2,241 CC CDS (coding) :: 2,241 CC Genes (RNA) :: 42 CC rRNAs :: 2, 2 (16S, 23S) CC partial rRNAs :: 2, 2 (16S, 23S) CC tRNAs :: 34 CC ncRNAs :: 4 CC Pseudo Genes (total) :: 92 CC Pseudo Genes (ambiguous residues) :: 0 of 92 CC Pseudo Genes (frameshifted) :: 17 of 92 CC Pseudo Genes (incomplete) :: 71 of 92 CC Pseudo Genes (internal stop) :: 12 of 92 CC Pseudo Genes (multiple problems) :: 6 of 92 CC Genome Coverage :: 164x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 164x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..116879 FT /organism="Staphylococcus sp. HMSC061F10" FT /host="Homo sapiens" FT /strain="HMSC061F10" FT /mol_type="genomic DNA" FT /isolation_source="vaginal/rectal" FT /db_xref="taxon:1715106" FT assembly_gap 16487..16586 FT /estimated_length=unknown FT /gap_type="within scaffold" FT /linkage_evidence="paired-ends" XX CO join(LWQD01000114.1:1..16486,gap(unk100),LWQD01000115.1:1..100293) // ID KV830408; SV 1; linear; genomic DNA; CON; PRO; 67141 BP. XX AC KV830408; LWQD01000000; XX PR Project:PRJNA296234; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Staphylococcus sp. HMSC061F10 genomic scaffold Scaffold487, whole genome DE shotgun sequence. XX KW . XX OS Staphylococcus sp. HMSC061F10 OC Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcaceae; OC Staphylococcus. XX RN [1] RP 1-67141 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (25-MAR-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; 8b77b7547f09cda03329a36175402198. DR ENA; LWQD01000000; SET. DR ENA; LWQD00000000; SET. DR BioSample; SAMN04498612. XX CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 04/22/2016 17:47:28 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 2,375 CC CDS (total) :: 2,333 CC Genes (coding) :: 2,241 CC CDS (coding) :: 2,241 CC Genes (RNA) :: 42 CC rRNAs :: 2, 2 (16S, 23S) CC partial rRNAs :: 2, 2 (16S, 23S) CC tRNAs :: 34 CC ncRNAs :: 4 CC Pseudo Genes (total) :: 92 CC Pseudo Genes (ambiguous residues) :: 0 of 92 CC Pseudo Genes (frameshifted) :: 17 of 92 CC Pseudo Genes (incomplete) :: 71 of 92 CC Pseudo Genes (internal stop) :: 12 of 92 CC Pseudo Genes (multiple problems) :: 6 of 92 CC Genome Coverage :: 164x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 164x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..67141 FT /organism="Staphylococcus sp. HMSC061F10" FT /host="Homo sapiens" FT /strain="HMSC061F10" FT /mol_type="genomic DNA" FT /isolation_source="vaginal/rectal" FT /db_xref="taxon:1715106" XX CO join(LWQD01000116.1:1..67141) // ID KV830409; SV 1; linear; genomic DNA; CON; PRO; 244 BP. XX AC KV830409; LWQD01000000; XX PR Project:PRJNA296234; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Staphylococcus sp. HMSC061F10 genomic scaffold Scaffold497, whole genome DE shotgun sequence. XX KW . XX OS Staphylococcus sp. HMSC061F10 OC Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcaceae; OC Staphylococcus. XX RN [1] RP 1-244 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (25-MAR-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; db7c3435aa3e2d0682a2b544710a1ca1. DR ENA; LWQD01000000; SET. DR ENA; LWQD00000000; SET. DR BioSample; SAMN04498612. XX CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 04/22/2016 17:47:28 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 2,375 CC CDS (total) :: 2,333 CC Genes (coding) :: 2,241 CC CDS (coding) :: 2,241 CC Genes (RNA) :: 42 CC rRNAs :: 2, 2 (16S, 23S) CC partial rRNAs :: 2, 2 (16S, 23S) CC tRNAs :: 34 CC ncRNAs :: 4 CC Pseudo Genes (total) :: 92 CC Pseudo Genes (ambiguous residues) :: 0 of 92 CC Pseudo Genes (frameshifted) :: 17 of 92 CC Pseudo Genes (incomplete) :: 71 of 92 CC Pseudo Genes (internal stop) :: 12 of 92 CC Pseudo Genes (multiple problems) :: 6 of 92 CC Genome Coverage :: 164x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 164x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..244 FT /organism="Staphylococcus sp. HMSC061F10" FT /host="Homo sapiens" FT /strain="HMSC061F10" FT /mol_type="genomic DNA" FT /isolation_source="vaginal/rectal" FT /db_xref="taxon:1715106" XX CO join(LWQD01000117.1:1..244) // ID KV830410; SV 1; linear; genomic DNA; CON; PRO; 3198 BP. XX AC KV830410; LWQD01000000; XX PR Project:PRJNA296234; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Staphylococcus sp. HMSC061F10 genomic scaffold Scaffold501, whole genome DE shotgun sequence. XX KW . XX OS Staphylococcus sp. HMSC061F10 OC Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcaceae; OC Staphylococcus. XX RN [1] RP 1-3198 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (25-MAR-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; 60beb589ac2197a6e01744eb82d98e7f. DR ENA; LWQD01000000; SET. DR ENA; LWQD00000000; SET. DR BioSample; SAMN04498612. XX CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 04/22/2016 17:47:28 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 2,375 CC CDS (total) :: 2,333 CC Genes (coding) :: 2,241 CC CDS (coding) :: 2,241 CC Genes (RNA) :: 42 CC rRNAs :: 2, 2 (16S, 23S) CC partial rRNAs :: 2, 2 (16S, 23S) CC tRNAs :: 34 CC ncRNAs :: 4 CC Pseudo Genes (total) :: 92 CC Pseudo Genes (ambiguous residues) :: 0 of 92 CC Pseudo Genes (frameshifted) :: 17 of 92 CC Pseudo Genes (incomplete) :: 71 of 92 CC Pseudo Genes (internal stop) :: 12 of 92 CC Pseudo Genes (multiple problems) :: 6 of 92 CC Genome Coverage :: 164x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 164x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..3198 FT /organism="Staphylococcus sp. HMSC061F10" FT /host="Homo sapiens" FT /strain="HMSC061F10" FT /mol_type="genomic DNA" FT /isolation_source="vaginal/rectal" FT /db_xref="taxon:1715106" XX CO join(LWQD01000118.1:1..3198) // ID KV830411; SV 1; linear; genomic DNA; CON; PRO; 907 BP. XX AC KV830411; LWQD01000000; XX PR Project:PRJNA296234; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Staphylococcus sp. HMSC061F10 genomic scaffold Scaffold505, whole genome DE shotgun sequence. XX KW . XX OS Staphylococcus sp. HMSC061F10 OC Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcaceae; OC Staphylococcus. XX RN [1] RP 1-907 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (25-MAR-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; 5819f5eb7b39399f34da06abaa7a1c43. DR ENA; LWQD01000000; SET. DR ENA; LWQD00000000; SET. DR BioSample; SAMN04498612. XX CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 04/22/2016 17:47:28 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 2,375 CC CDS (total) :: 2,333 CC Genes (coding) :: 2,241 CC CDS (coding) :: 2,241 CC Genes (RNA) :: 42 CC rRNAs :: 2, 2 (16S, 23S) CC partial rRNAs :: 2, 2 (16S, 23S) CC tRNAs :: 34 CC ncRNAs :: 4 CC Pseudo Genes (total) :: 92 CC Pseudo Genes (ambiguous residues) :: 0 of 92 CC Pseudo Genes (frameshifted) :: 17 of 92 CC Pseudo Genes (incomplete) :: 71 of 92 CC Pseudo Genes (internal stop) :: 12 of 92 CC Pseudo Genes (multiple problems) :: 6 of 92 CC Genome Coverage :: 164x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 164x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..907 FT /organism="Staphylococcus sp. HMSC061F10" FT /host="Homo sapiens" FT /strain="HMSC061F10" FT /mol_type="genomic DNA" FT /isolation_source="vaginal/rectal" FT /db_xref="taxon:1715106" XX CO join(LWQD01000119.1:1..907) // ID KV830412; SV 1; linear; genomic DNA; CON; PRO; 1119 BP. XX AC KV830412; LWQD01000000; XX PR Project:PRJNA296234; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Staphylococcus sp. HMSC061F10 genomic scaffold Scaffold508, whole genome DE shotgun sequence. XX KW . XX OS Staphylococcus sp. HMSC061F10 OC Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcaceae; OC Staphylococcus. XX RN [1] RP 1-1119 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (25-MAR-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; c1df91951dabd9fd7979951a1ff01d1b. DR ENA; LWQD01000000; SET. DR ENA; LWQD00000000; SET. DR BioSample; SAMN04498612. XX CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 04/22/2016 17:47:28 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 2,375 CC CDS (total) :: 2,333 CC Genes (coding) :: 2,241 CC CDS (coding) :: 2,241 CC Genes (RNA) :: 42 CC rRNAs :: 2, 2 (16S, 23S) CC partial rRNAs :: 2, 2 (16S, 23S) CC tRNAs :: 34 CC ncRNAs :: 4 CC Pseudo Genes (total) :: 92 CC Pseudo Genes (ambiguous residues) :: 0 of 92 CC Pseudo Genes (frameshifted) :: 17 of 92 CC Pseudo Genes (incomplete) :: 71 of 92 CC Pseudo Genes (internal stop) :: 12 of 92 CC Pseudo Genes (multiple problems) :: 6 of 92 CC Genome Coverage :: 164x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 164x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..1119 FT /organism="Staphylococcus sp. HMSC061F10" FT /host="Homo sapiens" FT /strain="HMSC061F10" FT /mol_type="genomic DNA" FT /isolation_source="vaginal/rectal" FT /db_xref="taxon:1715106" XX CO join(LWQD01000120.1:1..1119) // ID KV830413; SV 1; linear; genomic DNA; CON; PRO; 3261 BP. XX AC KV830413; LWQD01000000; XX PR Project:PRJNA296234; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Staphylococcus sp. HMSC061F10 genomic scaffold Scaffold526, whole genome DE shotgun sequence. XX KW . XX OS Staphylococcus sp. HMSC061F10 OC Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcaceae; OC Staphylococcus. XX RN [1] RP 1-3261 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (25-MAR-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; 633035e35065cbadf0f92460a8980711. DR ENA; LWQD01000000; SET. DR ENA; LWQD00000000; SET. DR BioSample; SAMN04498612. XX CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 04/22/2016 17:47:28 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 2,375 CC CDS (total) :: 2,333 CC Genes (coding) :: 2,241 CC CDS (coding) :: 2,241 CC Genes (RNA) :: 42 CC rRNAs :: 2, 2 (16S, 23S) CC partial rRNAs :: 2, 2 (16S, 23S) CC tRNAs :: 34 CC ncRNAs :: 4 CC Pseudo Genes (total) :: 92 CC Pseudo Genes (ambiguous residues) :: 0 of 92 CC Pseudo Genes (frameshifted) :: 17 of 92 CC Pseudo Genes (incomplete) :: 71 of 92 CC Pseudo Genes (internal stop) :: 12 of 92 CC Pseudo Genes (multiple problems) :: 6 of 92 CC Genome Coverage :: 164x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 164x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..3261 FT /organism="Staphylococcus sp. HMSC061F10" FT /host="Homo sapiens" FT /strain="HMSC061F10" FT /mol_type="genomic DNA" FT /isolation_source="vaginal/rectal" FT /db_xref="taxon:1715106" XX CO join(LWQD01000121.1:1..3261) // ID KV830414; SV 1; linear; genomic DNA; CON; PRO; 423 BP. XX AC KV830414; LWQD01000000; XX PR Project:PRJNA296234; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Staphylococcus sp. HMSC061F10 genomic scaffold Scaffold527, whole genome DE shotgun sequence. XX KW . XX OS Staphylococcus sp. HMSC061F10 OC Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcaceae; OC Staphylococcus. XX RN [1] RP 1-423 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (25-MAR-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; 5a08ba72dc98d5cd9a772dcb97a9cfad. DR ENA; LWQD01000000; SET. DR ENA; LWQD00000000; SET. DR BioSample; SAMN04498612. XX CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 04/22/2016 17:47:28 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 2,375 CC CDS (total) :: 2,333 CC Genes (coding) :: 2,241 CC CDS (coding) :: 2,241 CC Genes (RNA) :: 42 CC rRNAs :: 2, 2 (16S, 23S) CC partial rRNAs :: 2, 2 (16S, 23S) CC tRNAs :: 34 CC ncRNAs :: 4 CC Pseudo Genes (total) :: 92 CC Pseudo Genes (ambiguous residues) :: 0 of 92 CC Pseudo Genes (frameshifted) :: 17 of 92 CC Pseudo Genes (incomplete) :: 71 of 92 CC Pseudo Genes (internal stop) :: 12 of 92 CC Pseudo Genes (multiple problems) :: 6 of 92 CC Genome Coverage :: 164x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 164x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..423 FT /organism="Staphylococcus sp. HMSC061F10" FT /host="Homo sapiens" FT /strain="HMSC061F10" FT /mol_type="genomic DNA" FT /isolation_source="vaginal/rectal" FT /db_xref="taxon:1715106" XX CO join(LWQD01000122.1:1..423) // ID KV830415; SV 1; linear; genomic DNA; CON; PRO; 32415 BP. XX AC KV830415; LWQD01000000; XX PR Project:PRJNA296234; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Staphylococcus sp. HMSC061F10 genomic scaffold Scaffold53, whole genome DE shotgun sequence. XX KW . XX OS Staphylococcus sp. HMSC061F10 OC Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcaceae; OC Staphylococcus. XX RN [1] RP 1-32415 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (25-MAR-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; c1671456cd3299fd8aa004bfe73652cc. DR ENA; LWQD01000000; SET. DR ENA; LWQD00000000; SET. DR BioSample; SAMN04498612. XX CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 04/22/2016 17:47:28 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 2,375 CC CDS (total) :: 2,333 CC Genes (coding) :: 2,241 CC CDS (coding) :: 2,241 CC Genes (RNA) :: 42 CC rRNAs :: 2, 2 (16S, 23S) CC partial rRNAs :: 2, 2 (16S, 23S) CC tRNAs :: 34 CC ncRNAs :: 4 CC Pseudo Genes (total) :: 92 CC Pseudo Genes (ambiguous residues) :: 0 of 92 CC Pseudo Genes (frameshifted) :: 17 of 92 CC Pseudo Genes (incomplete) :: 71 of 92 CC Pseudo Genes (internal stop) :: 12 of 92 CC Pseudo Genes (multiple problems) :: 6 of 92 CC Genome Coverage :: 164x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 164x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..32415 FT /organism="Staphylococcus sp. HMSC061F10" FT /host="Homo sapiens" FT /strain="HMSC061F10" FT /mol_type="genomic DNA" FT /isolation_source="vaginal/rectal" FT /db_xref="taxon:1715106" XX CO join(LWQD01000123.1:1..32415) // ID KV830416; SV 1; linear; genomic DNA; CON; PRO; 2500 BP. XX AC KV830416; LWQD01000000; XX PR Project:PRJNA296234; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Staphylococcus sp. HMSC061F10 genomic scaffold Scaffold537, whole genome DE shotgun sequence. XX KW . XX OS Staphylococcus sp. HMSC061F10 OC Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcaceae; OC Staphylococcus. XX RN [1] RP 1-2500 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (25-MAR-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; 33e840e3020b08d0c7e6f1467f185368. DR ENA; LWQD01000000; SET. DR ENA; LWQD00000000; SET. DR BioSample; SAMN04498612. XX CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 04/22/2016 17:47:28 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 2,375 CC CDS (total) :: 2,333 CC Genes (coding) :: 2,241 CC CDS (coding) :: 2,241 CC Genes (RNA) :: 42 CC rRNAs :: 2, 2 (16S, 23S) CC partial rRNAs :: 2, 2 (16S, 23S) CC tRNAs :: 34 CC ncRNAs :: 4 CC Pseudo Genes (total) :: 92 CC Pseudo Genes (ambiguous residues) :: 0 of 92 CC Pseudo Genes (frameshifted) :: 17 of 92 CC Pseudo Genes (incomplete) :: 71 of 92 CC Pseudo Genes (internal stop) :: 12 of 92 CC Pseudo Genes (multiple problems) :: 6 of 92 CC Genome Coverage :: 164x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 164x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..2500 FT /organism="Staphylococcus sp. HMSC061F10" FT /host="Homo sapiens" FT /strain="HMSC061F10" FT /mol_type="genomic DNA" FT /isolation_source="vaginal/rectal" FT /db_xref="taxon:1715106" XX CO join(LWQD01000124.1:1..2500) // ID KV830417; SV 1; linear; genomic DNA; CON; PRO; 48623 BP. XX AC KV830417; LWQD01000000; XX PR Project:PRJNA296234; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Staphylococcus sp. HMSC061F10 genomic scaffold Scaffold54, whole genome DE shotgun sequence. XX KW . XX OS Staphylococcus sp. HMSC061F10 OC Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcaceae; OC Staphylococcus. XX RN [1] RP 1-48623 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (25-MAR-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; 17943146c52d81b04f1cc44f318c8b0a. DR ENA; LWQD01000000; SET. DR ENA; LWQD00000000; SET. DR BioSample; SAMN04498612. XX CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 04/22/2016 17:47:28 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 2,375 CC CDS (total) :: 2,333 CC Genes (coding) :: 2,241 CC CDS (coding) :: 2,241 CC Genes (RNA) :: 42 CC rRNAs :: 2, 2 (16S, 23S) CC partial rRNAs :: 2, 2 (16S, 23S) CC tRNAs :: 34 CC ncRNAs :: 4 CC Pseudo Genes (total) :: 92 CC Pseudo Genes (ambiguous residues) :: 0 of 92 CC Pseudo Genes (frameshifted) :: 17 of 92 CC Pseudo Genes (incomplete) :: 71 of 92 CC Pseudo Genes (internal stop) :: 12 of 92 CC Pseudo Genes (multiple problems) :: 6 of 92 CC Genome Coverage :: 164x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 164x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..48623 FT /organism="Staphylococcus sp. HMSC061F10" FT /host="Homo sapiens" FT /strain="HMSC061F10" FT /mol_type="genomic DNA" FT /isolation_source="vaginal/rectal" FT /db_xref="taxon:1715106" XX CO join(LWQD01000125.1:1..48623) // ID KV830418; SV 1; linear; genomic DNA; CON; PRO; 284 BP. XX AC KV830418; LWQD01000000; XX PR Project:PRJNA296234; XX DT 18-NOV-2016 (Rel. 131, Created) DT 18-NOV-2016 (Rel. 131, Last updated, Version 1) XX DE Staphylococcus sp. HMSC061F10 genomic scaffold Scaffold548, whole genome DE shotgun sequence. XX KW . XX OS Staphylococcus sp. HMSC061F10 OC Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcaceae; OC Staphylococcus. XX RN [1] RP 1-284 RA Mitreva M., Pepin K.H., Mihindukulasuriya K.A., Fulton R., Fronick C., RA O'Laughlin M., Miner T., Herter B., Rosa B.A., Cordes M., Tomlinson C., RA Wollam A., Palsikar V.B., Mardis E.R., Wilson R.K.; RT ; RL Submitted (25-MAR-2016) to the INSDC. RL McDonnell Genome Institute, Washington University School of Medicine, 4444 RL Forest Park, St. Louis, MO 63108, USA XX DR MD5; 0afc5ec41b1c11d3fb96a6701129c51e. DR ENA; LWQD01000000; SET. DR ENA; LWQD00000000; SET. DR BioSample; SAMN04498612. XX CC The WUSC is a large strain collection isolated from clinical CC samples. Each sample is associated with metadata, including source, CC isolation site, 16s rRNA, metabolic, and other phenotypic CC information. The goal is to sample an adequate number of important, CC yet minor species, further adding to the catelogue of sequenced CC bacterial genomes and improving the diversity of the genomes CC available to the public. WGS will be preformed on approximely 550 CC isolates. Samples were selected based on RDP analysis at the genus CC level. This is a reference genomes for the Human Microbiome Project CC and the work was funded by the National Institutes of Health (NIH) CC grant U54 HG004968. CC Annotation was added by the NCBI Prokaryotic Genome Annotation CC Pipeline (released 2013). Information about the Pipeline can be CC found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ CC ##Genome-Annotation-Data-START## CC Annotation Provider :: NCBI CC Annotation Date :: 04/22/2016 17:47:28 CC Annotation Pipeline :: NCBI Prokaryotic Genome CC Annotation Pipeline CC Annotation Method :: Best-placed reference protein CC set; GeneMarkS+ CC Annotation Software revision :: 3.1 CC Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; CC repeat_region CC Genes (total) :: 2,375 CC CDS (total) :: 2,333 CC Genes (coding) :: 2,241 CC CDS (coding) :: 2,241 CC Genes (RNA) :: 42 CC rRNAs :: 2, 2 (16S, 23S) CC partial rRNAs :: 2, 2 (16S, 23S) CC tRNAs :: 34 CC ncRNAs :: 4 CC Pseudo Genes (total) :: 92 CC Pseudo Genes (ambiguous residues) :: 0 of 92 CC Pseudo Genes (frameshifted) :: 17 of 92 CC Pseudo Genes (incomplete) :: 71 of 92 CC Pseudo Genes (internal stop) :: 12 of 92 CC Pseudo Genes (multiple problems) :: 6 of 92 CC Genome Coverage :: 164x CC ##Genome-Annotation-Data-END## CC ##Genome-Assembly-Data-START## CC Assembly Method :: Velvet v. 1.1.06 CC Genome Coverage :: 164x CC Sequencing Technology :: Illumina CC ##Genome-Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..284 FT /organism="Staphylococcus sp. HMSC061F10" FT /host="Homo sapiens" FT /strain="HMSC061F10" FT /mol_type="genomic DNA" FT /isolation_source="vaginal