ID MT167072; SV 1; linear; viral cRNA; STD; VRL; 2208 BP. XX AC MT167072; XX PR Project:PRJNA37813; XX DT 17-MAR-2020 (Rel. 144, Created) DT 17-MAR-2020 (Rel. 144, Last updated, Version 1) XX DE Influenza A virus (A/New Hampshire/42/2019(H1N1)) segment 3 polymerase PA DE (PA) and PA-X protein (PA-X) genes, complete cds. XX KW . XX OS Influenza A virus OC Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Insthoviricetes; OC Articulavirales; Orthomyxoviridae; Alphainfluenzavirus. XX RN [1] RP 1-2208 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT "Influenza Sequencing Activity group"; RL Unpublished. XX RN [2] RP 1-2208 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT ; RL Submitted (09-MAR-2020) to the INSDC. RL WHO Collaborating Center for Surveillance, Epidemiology and Control of RL Influenza, Influenza Division, Centers for Disease Control and Prevention, RL 1600 Clifton Road, N.E., Atlanta, GA 30333, USA XX DR MD5; 491b531d37449eee502349b23bcbbced. XX CC ##FluData-START## CC EPI_ISOLATE_ID :: EPI_ISL_409137 CC NAME :: A/New Hampshire/42/2019 CC TYPE :: H1N1 CC Segment_name :: PA CC HOST_AGE :: 56 CC HOST_GENDER :: F CC PASSAGE :: Original CC LOCATION :: United States / New Hampshire CC COLLECT_DATE :: 16-Dec-2019 CC Lineage :: A(H1N1)pdm09 CC SPECIMEN_ID :: 1912300011 ORIGINAL CC SENDER_LAB :: New Hampshire Public Health Laboratories CC SEQLAB_SAMPLE_ID :: 3026054568 CC EPI_SEQUENCE_ID :: EPI1683959 CC ##FluData-END## XX FH Key Location/Qualifiers FH FT source 1..2208 FT /organism="Influenza A virus" FT /segment="3" FT /host="Homo sapiens" FT /strain="A/New Hampshire/42/2019" FT /serotype="H1N1" FT /mol_type="viral cRNA" FT /country="USA:New Hampshire" FT /collection_date="16-Dec-2019" FT /db_xref="taxon:11320" FT gene 13..2163 FT /gene="PA" FT CDS 13..2163 FT /codon_start=1 FT /gene="PA" FT /product="polymerase PA" FT /protein_id="QIJ23512.1" FT /translation="MEDFVRQCFNPMIVELAEKAMKEYGEDPKIETNKFAAICTHLEVC FT FMYSDFHFIDERGESIIVESGDPNALLKHRFEIIEGRDRIMAWTVVNSICNTTGIEKPK FT FLPDLYDYKENRFIEIGVTRREVHIYYLEKANKIKSEKTHIHIFSFTGEEMATKADYTL FT DEESRARIKTRLFTIRQEMASRSLWDSFRQSERGEETIEEKFEITGTMRRLADQSLPPN FT FSSLENFRAYVDGFEPNGCIEGKLSQMSKEVNAKIEPFLRTTPRPLRLPDGPLCHQRSK FT FLLMDALKLSIEDPSHEGEGIPLYDAIKCMKTFFGWKEPKIVKPHEKGVNPNYLMAWKQ FT VLAELQDIENEEKIPRTKNMKKTSQLKWALGENMAPEKVDFDDCKDVGDLKQYDSDEPE FT PRSLASWVQNEFNKACELTDSSWIELDEIGEDVAPIEHIASMRRNYFTAEVSHCRATEY FT IMKGVYINTALLNASCAAMDDFQLIPMISKCRTKEGRRKTNLYGFIIKGRSHLRNDTDV FT VNFVSMEFSLTDPRLEPHKWEKYCVLEIGDMLLRTAIGQVSRPMFLYVRTNGTSKIKMK FT WGMEMRRCLLQSLQQIESMIEAESSVKEKDMTKEFFENKSETWPIGESPRGVEEGSIGK FT VCRTLLAKSVFNSLYASPQLEGFSAESRKLLLIVQALRDNLEPGTFDLGGLYEAIEECL FT INDPWVLLNASWFNSFLTHALK" FT gene 13..712 FT /gene="PA-X" FT CDS join(13..582,584..712) FT /codon_start=1 FT /ribosomal_slippage FT /gene="PA-X" FT /product="PA-X protein" FT /protein_id="QIJ23513.1" FT /translation="MEDFVRQCFNPMIVELAEKAMKEYGEDPKIETNKFAAICTHLEVC FT FMYSDFHFIDERGESIIVESGDPNALLKHRFEIIEGRDRIMAWTVVNSICNTTGIEKPK FT FLPDLYDYKENRFIEIGVTRREVHIYYLEKANKIKSEKTHIHIFSFTGEEMATKADYTL FT DEESRARIKTRLFTIRQEMASRSLWDSFVSPKEAKKQLKKSLKLQELCAGLPTKVSHQT FT SPALKTSEPM" XX SQ Sequence 2208 BP; 743 A; 417 C; 516 G; 532 T; 0 other; tactgatcca aaatggaaga ctttgtgcga caatgcttca atccaatgat cgtcgagctt 60 gcggaaaagg caatgaaaga atatggggaa gaccccaaaa ttgaaactaa taagtttgct 120 gcaatttgca cacatttgga agtttgtttc atgtattcgg atttccattt cattgatgaa 180 cggggtgaat caataattgt agaatctggt gacccaaatg cactattgaa gcaccgattt 240 gagataattg aaggaagaga ccgaatcatg gcttggacag tggtgaacag tatatgtaac 300 acaacaggga tagagaagcc taaatttctt cctgatttgt atgattacaa agagaaccgg 360 ttcattgaaa ttggagtaac acggagagaa gttcacatat attacctaga gaaagccaac 420 aaaataaaat ctgagaagac acacattcac atcttttcat tcactggaga ggagatggcc 480 accaaagcgg actacactct tgacgaagaa agcagagcaa gaatcaaaac taggcttttc 540 actataagac aagaaatggc cagtaggagt ctatgggatt cctttcgtca gtccgaaaga 600 ggcgaagaaa caattgaaga aaagtttgaa attacaggaa ctatgcgcag gcttgccgac 660 caaagtctcc caccaaactt ctccagcctt gaaaacttca gagcctatgt agatggattc 720 gagccgaacg gctgcattga gggtaagctt tcccaaatgt caaaagaagt gaacgccaaa 780 attgaaccat tcttgaggac gacaccacgc cctctcagat tacctgatgg acctctttgc 840 catcagcggt caaagttcct gctgatggat gctctgaaat taagcattga agacccgagt 900 cacgaggggg aaggaatacc actatatgat gcaatcaaat gcatgaagac attctttggc 960 tggaaagagc ctaaaatagt caaaccacat gagaaaggcg taaatcccaa ttacctcatg 1020 gcttggaagc aggtgctagc agagctacag gacattgaaa atgaagagaa aatcccaagg 1080 acaaagaaca tgaagaaaac aagccaattg aagtgggcac tcggtgaaaa tatggcacct 1140 gaaaaagtgg actttgatga ctgtaaagat gttggagacc ttaaacagta tgacagtgat 1200 gagccagagc ccagatctct agcaagctgg gtccaaaatg aattcaataa ggcatgtgaa 1260 ttgactgatt caagctggat agaacttgat gaaataggag aagatgttgc cccaattgaa 1320 catatagcaa gcatgaggag gaactatttt acagcagaag tgtctcactg cagggctact 1380 gaatacataa tgaagggagt gtacataaat acggccttgc ttaatgcatc ctgtgcagcc 1440 atggatgact ttcagctgat tccaatgata agcaaatgta ggaccaaaga aggaagacgg 1500 aaaacaaacc tttatgggtt cattataaaa ggaaggtctc atttgagaaa tgatactgat 1560 gtggtgaact ttgtaagtat ggagttctca ctcactgatc caagactgga accacacaaa 1620 tgggaaaaat actgtgttct tgaaatagga gacatgctat tgaggactgc gataggtcaa 1680 gtgtcgaggc ccatgttcct atatgtgaga accaatggaa cctccaagat caagatgaaa 1740 tggggcatgg aaatgaggcg ctgccttctt caatctcttc aacagattga gagcatgatt 1800 gaagccgagt cttctgtcaa agagaaagac atgaccaagg aattctttga aaacaaatcg 1860 gaaacatggc caatcggaga atcacccagg ggagtggagg aaggctctat tggaaaagtg 1920 tgcagaacct tactggcaaa atctgtgttc aacagtctat atgcttctcc acaacttgag 1980 gggttttcgg ctgaatcaag aaaattgctt ctcattgttc aggcacttag ggacaacctg 2040 gaacctggaa cctttgatct tggggggcta tatgaagcaa tcgaggagtg cttgattaat 2100 gatccctggg ttttgcttaa tgcatcttgg ttcaactcct tcctcacaca tgcactgaag 2160 tagttgtggc aatgctacta tttgctatcc atattgtcca aaaaagta 2208 // ID MT167073; SV 1; linear; viral cRNA; STD; VRL; 1752 BP. XX AC MT167073; XX PR Project:PRJNA37813; XX DT 17-MAR-2020 (Rel. 144, Created) DT 17-MAR-2020 (Rel. 144, Last updated, Version 1) XX DE Influenza A virus (A/New Hampshire/42/2019(H1N1)) segment 4 hemagglutinin DE (HA) gene, complete cds. XX KW . XX OS Influenza A virus OC Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Insthoviricetes; OC Articulavirales; Orthomyxoviridae; Alphainfluenzavirus. XX RN [1] RP 1-1752 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT "Influenza Sequencing Activity group"; RL Unpublished. XX RN [2] RP 1-1752 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT ; RL Submitted (09-MAR-2020) to the INSDC. RL WHO Collaborating Center for Surveillance, Epidemiology and Control of RL Influenza, Influenza Division, Centers for Disease Control and Prevention, RL 1600 Clifton Road, N.E., Atlanta, GA 30333, USA XX DR MD5; 90d42ba5f3601696e1ad55255730eec2. XX CC ##FluData-START## CC EPI_ISOLATE_ID :: EPI_ISL_409137 CC NAME :: A/New Hampshire/42/2019 CC TYPE :: H1N1 CC Segment_name :: HA CC HOST_AGE :: 56 CC HOST_GENDER :: F CC PASSAGE :: Original CC LOCATION :: United States / New Hampshire CC COLLECT_DATE :: 16-Dec-2019 CC Lineage :: A(H1N1)pdm09 CC SPECIMEN_ID :: 1912300011 ORIGINAL CC SENDER_LAB :: New Hampshire Public Health Laboratories CC SEQLAB_SAMPLE_ID :: 3026054568 CC EPI_SEQUENCE_ID :: EPI1683970 CC ##FluData-END## XX FH Key Location/Qualifiers FH FT source 1..1752 FT /organism="Influenza A virus" FT /segment="4" FT /host="Homo sapiens" FT /strain="A/New Hampshire/42/2019" FT /serotype="H1N1" FT /mol_type="viral cRNA" FT /country="USA:New Hampshire" FT /collection_date="16-Dec-2019" FT /db_xref="taxon:11320" FT gene 21..1721 FT /gene="HA" FT CDS 21..1721 FT /codon_start=1 FT /gene="HA" FT /product="hemagglutinin" FT /function="receptor binding and fusion protein" FT /protein_id="QIJ23514.1" FT /translation="MKAILVVLLYTFTTANADTLCIGYHANNSTDTVDTVLEKNVTVTH FT SVNLLEDKHNGKLCKLRGVAPLHLGKCNIAGWILGNPECESLSTARSWSYIVETSNSDN FT GTCYPGDFINYEELREQLSSVSSFERFEIFPKTSSWPNHDSDKGVTAACPHAGAKSFYK FT NLIWLVKKGNSYPKLNQTYINDKGKEVLVLWGIHHPPTIAAQESLYQNADAYVFVGTSR FT YSKKFKPEIATRPKVRDQEGRMNYYWTLVEPGDKITFEATGNLVVPRYAFTMERDAGSG FT IIISDTPVHDCNTTCQTPEGAINTSLPFQNVHPITIGKCPKYVKSTKLRLATGLRNVPS FT IQSRGLFGAIAGFIEGGWTGMVDGWYGYHHQNEQGSGYAADLKSTQNAIDKITNKVNSV FT IEKMNTQFTAVGKEFNHLEKRIENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSN FT VKNLYEKVRNQLKNNAKEIGNGCFEFYHKCDNTCMESVKNGTYDYPKYSEEAKLNREKI FT DGVKLESTRIYQILAIYSTVASSLVLVVSLGAISFWMCSNGSLQCRICI" FT sig_peptide 21..71 FT /gene="HA" FT mat_peptide 72..1052 FT /gene="HA" FT /product="HA1" FT mat_peptide 1053..1718 FT /gene="HA" FT /product="HA2" XX SQ Sequence 1752 BP; 627 A; 327 C; 387 G; 411 T; 0 other; ggaaaacaaa agcaacaaaa atgaaggcaa tactagtagt tctgctgtat acatttacaa 60 ccgcaaatgc agacacatta tgtataggtt atcatgcgaa caattcaaca gacactgtag 120 acacagtact agaaaagaat gtaacagtaa cacactctgt caatcttctg gaagacaagc 180 ataacggaaa actatgcaaa ctaagagggg tagccccatt gcatttgggt aaatgtaaca 240 ttgctggctg gatcctggga aatccagagt gtgaatcact ctccacagca aggtcatggt 300 cctacattgt ggaaacatct aattcagaca atggaacgtg ttacccagga gatttcatca 360 attatgagga gctaagagag caattgagct cagtgtcatc atttgaaagg tttgaaatat 420 tccccaagac aagttcatgg cctaatcatg actcggacaa aggtgtaacg gcagcatgtc 480 ctcacgctgg agcaaaaagc ttctacaaaa acttgatatg gctggttaaa aaaggaaatt 540 catacccaaa gctcaaccaa acctacatta atgataaagg gaaagaagtc ctcgtgctgt 600 ggggcattca ccatccacct actattgctg cccaagaaag tctctatcag aatgcagatg 660 catatgtttt tgtggggaca tcaagataca gcaagaagtt caagccggaa atagcaacaa 720 gacccaaagt gagggatcaa gaagggagaa tgaactatta ctggacacta gtagaaccgg 780 gagacaaaat aacattcgaa gcaactggaa atctagtggt accgagatat gcattcacaa 840 tggaaagaga tgctggatct ggtattatca tttcagatac accagtccac gattgcaata 900 caacttgtca gacacccgag ggtgctataa acaccagcct cccatttcag aatgtacatc 960 cgattacaat tgggaaatgt ccaaagtatg taaaaagcac aaaattgaga ctggccacag 1020 gattgaggaa tgtcccgtct attcaatcta gaggcctatt cggggccatt gctggcttca 1080 ttgaaggggg gtggacaggg atggtagatg gatggtacgg ttatcaccat caaaatgagc 1140 aggggtcagg atatgcagcc gatctgaaga gcacacaaaa tgccattgat aagattacta 1200 acaaagtaaa ttctgttatt gaaaagatga atacacagtt cacagcagtg ggtaaagagt 1260 tcaaccacct tgaaaaaaga atagagaatc taaataaaaa agttgatgat ggtttcctgg 1320 acatttggac ttacaatgcc gagctgttgg ttctactgga aaacgaaaga actttggact 1380 atcacgattc aaatgtgaag aacttgtatg aaaaagtaag aaaccagtta aaaaacaatg 1440 ccaaggaaat tggaaacggc tgctttgaat tttaccacaa atgcgacaac acatgcatgg 1500 aaagtgtcaa gaatgggact tatgactacc caaaatactc agaggaagca aaattaaaca 1560 gagaaaaaat agatggagta aagctggaat caacaaggat ctaccagatt ttggcgatct 1620 attcaactgt tgccagttca ttggtactgg tagtctccct gggggcaatc agcttctgga 1680 tgtgctctaa tgggtctcta cagtgtagaa tatgtattta acattaggat ttcagaatca 1740 tgagaaaaac ac 1752 // ID MT167074; SV 1; linear; viral cRNA; STD; VRL; 1540 BP. XX AC MT167074; XX PR Project:PRJNA37813; XX DT 17-MAR-2020 (Rel. 144, Created) DT 17-MAR-2020 (Rel. 144, Last updated, Version 1) XX DE Influenza A virus (A/New Hampshire/42/2019(H1N1)) segment 5 nucleocapsid DE protein (NP) gene, complete cds. XX KW . XX OS Influenza A virus OC Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Insthoviricetes; OC Articulavirales; Orthomyxoviridae; Alphainfluenzavirus. XX RN [1] RP 1-1540 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT "Influenza Sequencing Activity group"; RL Unpublished. XX RN [2] RP 1-1540 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT ; RL Submitted (09-MAR-2020) to the INSDC. RL WHO Collaborating Center for Surveillance, Epidemiology and Control of RL Influenza, Influenza Division, Centers for Disease Control and Prevention, RL 1600 Clifton Road, N.E., Atlanta, GA 30333, USA XX DR MD5; d95f50a583411bb2f675cf57c6ca38f8. XX CC ##FluData-START## CC EPI_ISOLATE_ID :: EPI_ISL_409137 CC NAME :: A/New Hampshire/42/2019 CC TYPE :: H1N1 CC Segment_name :: NP CC HOST_AGE :: 56 CC HOST_GENDER :: F CC PASSAGE :: Original CC LOCATION :: United States / New Hampshire CC COLLECT_DATE :: 16-Dec-2019 CC Lineage :: A(H1N1)pdm09 CC SPECIMEN_ID :: 1912300011 ORIGINAL CC SENDER_LAB :: New Hampshire Public Health Laboratories CC SEQLAB_SAMPLE_ID :: 3026054568 CC EPI_SEQUENCE_ID :: EPI1683955 CC ##FluData-END## XX FH Key Location/Qualifiers FH FT source 1..1540 FT /organism="Influenza A virus" FT /segment="5" FT /host="Homo sapiens" FT /strain="A/New Hampshire/42/2019" FT /serotype="H1N1" FT /mol_type="viral cRNA" FT /country="USA:New Hampshire" FT /collection_date="16-Dec-2019" FT /db_xref="taxon:11320" FT gene 34..1530 FT /gene="NP" FT CDS 34..1530 FT /codon_start=1 FT /gene="NP" FT /product="nucleocapsid protein" FT /protein_id="QIJ23515.1" FT /translation="MASQGTKRSYEQMETGGERQDTTEIRASVGRMIGGIGRFYIQMCT FT ELKLSDYDGRLIQNSITIERMVLSSFDERRNKYLEEHPSAGKDPKKTGGPIYRRIDGKW FT TRELILYDKEEIRRVWRQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRM FT CSLMQGSTLPRRSGAAGAAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTRVAYERM FT CNILKGKFQTAAQRAMMDQVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVY FT GLAVASGHDFEREGYSLVGIDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFED FT LRVSSFIRGKKVIPRGKLSTRGVQIASNENVETMDSNTLELRSRYWAIRTRSGGNTNQQ FT KASAGQISVQPTFSVQRNLPFERATIMAAFSGNNEGRTSDMRTEIIRMMESAKPEDLSF FT QGRGVFELSDEKATNPIVPSFDMSNEGSYFFGDNAEEYDN" XX SQ Sequence 1540 BP; 529 A; 296 C; 389 G; 326 T; 0 other; gtagataatc actcaatgag tgacatcgaa gccatggcgt ctcaaggcac caaacgatca 60 tatgaacaaa tggagactgg tggggagcgc caggatacca cagaaatcag agcatctgtt 120 ggaagaatga ttggtggaat cgggagattc tacatccaaa tgtgcactga actaaaactc 180 agtgattatg atggacgact aatccagaac agcataacaa tagagaggat ggtgctttct 240 tcttttgatg agagaagaaa taaataccta gaagagcatc caagtgctgg gaaggaccct 300 aagaaaacag gaggacccat ctatagaaga atagacggaa aatggacaag agaactcatc 360 ctttatgaca aagaagaaat aagaagagtt tggcgccaag caaacaatgg cgaagatgca 420 acagcaggtc ttactcatat catgatttgg cattccaatc tgaatgatgc cacatatcag 480 aggacaagag cacttgttcg cactggaatg gatcccagaa tgtgctctct aatgcaaggt 540 tcaacacttc ccagaaggtc tggtgccgca ggtgctgcag taaaaggagt tggaacaata 600 gctatggagt taatcagaat gataaaacgt ggaatcaatg accgaaattt ctggaggggt 660 gaaaatggaa gaaggacaag agttgcttat gaaagaatgt gcaatatcct caaaggaaaa 720 tttcaaacag ctgcccagag ggcaatgatg gatcaagtaa gagaaagtcg aaacccagga 780 aacgctgaga ttgaagacct cattttcctg gcacggtcag cactcattct gagaggatca 840 gttgcacata aatcctgcct gcctgcttgt gtgtatgggc ttgcagtagc aagtggccat 900 gactttgaaa gggaagggta ctcactggtc gggatagacc cattcaaatt actccaaaac 960 agtcaagtgg tcagcctgat gagaccaaat gaaaatccag ctcacaagag tcaattggta 1020 tggatggcat gccactctgc tgcatttgaa gatttaagag tatcaagttt cataagagga 1080 aagaaagtga tcccaagagg aaagctttcc acaagagggg ttcagattgc ttcaaatgag 1140 aatgtggaaa ccatggactc caataccctg gaactaagaa gcagatactg ggccataaga 1200 accagaagtg gaggaaatac caatcaacag aaggcatctg caggccagat cagtgtgcag 1260 cctacattct cagtgcagcg aaatctccct tttgaaagag caaccattat ggcagcattc 1320 agcgggaaca atgaaggacg gacatccgac atgcgaacag aaattataag aatgatggaa 1380 agtgcaaagc cagaggattt gtccttccag gggcggggag tcttcgagct ctcggacgaa 1440 aaggcaacga acccgatcgt gccttccttt gacatgagta atgaagggtc ttatttcttc 1500 ggagacaatg cagaggagta tgacaattga agaaaaatac 1540 // ID MT167075; SV 1; linear; viral cRNA; STD; VRL; 1433 BP. XX AC MT167075; XX PR Project:PRJNA37813; XX DT 17-MAR-2020 (Rel. 144, Created) DT 17-MAR-2020 (Rel. 144, Last updated, Version 1) XX DE Influenza A virus (A/New Hampshire/42/2019(H1N1)) segment 6 neuraminidase DE (NA) gene, complete cds. XX KW . XX OS Influenza A virus OC Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Insthoviricetes; OC Articulavirales; Orthomyxoviridae; Alphainfluenzavirus. XX RN [1] RP 1-1433 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT "Influenza Sequencing Activity group"; RL Unpublished. XX RN [2] RP 1-1433 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT ; RL Submitted (09-MAR-2020) to the INSDC. RL WHO Collaborating Center for Surveillance, Epidemiology and Control of RL Influenza, Influenza Division, Centers for Disease Control and Prevention, RL 1600 Clifton Road, N.E., Atlanta, GA 30333, USA XX DR MD5; fe430137179cf8e90dcf8f5d1d66f393. XX CC ##FluData-START## CC EPI_ISOLATE_ID :: EPI_ISL_409137 CC NAME :: A/New Hampshire/42/2019 CC TYPE :: H1N1 CC Segment_name :: NA CC HOST_AGE :: 56 CC HOST_GENDER :: F CC PASSAGE :: Original CC LOCATION :: United States / New Hampshire CC COLLECT_DATE :: 16-Dec-2019 CC Lineage :: A(H1N1)pdm09 CC SPECIMEN_ID :: 1912300011 ORIGINAL CC SENDER_LAB :: New Hampshire Public Health Laboratories CC SEQLAB_SAMPLE_ID :: 3026054568 CC EPI_SEQUENCE_ID :: EPI1683966 CC ##FluData-END## XX FH Key Location/Qualifiers FH FT source 1..1433 FT /organism="Influenza A virus" FT /segment="6" FT /host="Homo sapiens" FT /strain="A/New Hampshire/42/2019" FT /serotype="H1N1" FT /mol_type="viral cRNA" FT /country="USA:New Hampshire" FT /collection_date="16-Dec-2019" FT /db_xref="taxon:11320" FT gene 9..1418 FT /gene="NA" FT CDS 9..1418 FT /codon_start=1 FT /gene="NA" FT /product="neuraminidase" FT /protein_id="QIJ23516.1" FT /translation="MNPNQKIITIGSICMTIGMANLILQIGNIISIWVSHSIQTGNQSQ FT IETCNKNVITYENNTWVNQTYVNISNTNSAARQSVASVKLAGNSSLCPVSGWAIYSKDN FT SVRIGSKGDVFVIREPFISCSPLECRTFFLTQGALLNDKHSNGTIKDRSPYRTLMSCPI FT GEVPSPYNSRFESVAWSASACHDGTNWLTIGISGPDSGAVAVLKYNGIITDTIKSWRNN FT ILRTQESECACVNGSCFTIMTDGPSDGQASYKIFRIEKGKIIKSVEMKAPNYHYEECSC FT YPDSSEITCVCRDNWHGSNRPWVSFNQNLEYQMGYICSGVFGDNPRPNDKTGSCGPVSS FT NGANGVKGFSFKYGNGVWIGRTKSISSRKGFEMIWDPNGWTGTDNKFSKKQDIVGINEW FT SGYSGSFVQHPELTGLNCIRPCFWVELIRGRPEENTIWTSGSSISFCGVDSDIVGWSWP FT DGAELPFTIDK" XX SQ Sequence 1433 BP; 465 A; 267 C; 332 G; 369 T; 0 other; agtttaaaat gaatccaaac caaaagataa taaccattgg ctctatctgt atgacaattg 60 gaatggctaa cttaatatta caaattggaa acataatctc aatatgggtt agccactcaa 120 ttcaaaccgg aaaccaaagc cagatcgaaa catgcaataa aaacgtcatt acttatgaaa 180 acaatacttg ggtaaatcag acatatgtta acatcagcaa caccaactct gctgctagac 240 agtcagtggc ttccgtgaaa ttagcgggca actcctctct ctgccctgtc agtggatggg 300 ctatatacag taaagacaac agtgtaagaa tcggttccaa gggggatgtg tttgtcataa 360 gggaaccatt catatcatgc tctcccttgg aatgcagaac cttcttcttg actcaagggg 420 ctttgctaaa tgacaaacat tccaatggaa ccattaaaga cagaagccca tatcgaaccc 480 taatgagctg tcctattggt gaagttccct ctccatacaa ctcaagattt gagtcagtcg 540 cttggtcagc aagtgcttgt catgatggca ccaattggct aacaattgga atttctggcc 600 cagacagtgg ggcagtggct gtgttaaaat acaatggcat aataacagac actatcaaga 660 gttggaggaa caatatattg agaacacaag agtctgaatg tgcatgtgta aatggttctt 720 gctttaccat aatgaccgat ggaccaagtg atggacaggc ctcatacaaa atcttcagaa 780 tagaaaaggg aaagataatc aaatcagtcg aaatgaaagc ccctaattat cactatgagg 840 aatgctcctg ttaccctgat tctagtgaaa tcacatgtgt gtgcagggat aactggcatg 900 gctcgaatcg accgtgggtg tctttcaacc agaatctgga ataccagatg ggatacatat 960 gcagtggggt tttcggagac aatccacgcc ctaatgataa gacaggcagt tgtggtccag 1020 tatcgtctaa tggagcaaat ggggtaaaag gattttcatt caaatacggc aatggtgttt 1080 ggatagggag aactaagagc attagttcaa gaaaaggttt tgagatgatt tgggatccga 1140 atggatggac tgggactgac aataaattct caaaaaagca agatatcgta ggaataaatg 1200 agtggtcagg gtatagcggg agttttgttc agcatccaga actaacaggg ctgaattgta 1260 taagaccttg cttctgggtt gaactaataa gaggacgacc cgaagagaac acaatctgga 1320 ctagtgggag cagcatatcc ttttgtggtg tagacagtga cattgtgggt tggtcttggc 1380 cagacggtgc tgagttgcca tttaccattg acaagtaatt tgttcaaaaa act 1433 // ID MT167076; SV 1; linear; viral cRNA; STD; VRL; 1002 BP. XX AC MT167076; XX PR Project:PRJNA37813; XX DT 17-MAR-2020 (Rel. 144, Created) DT 17-MAR-2020 (Rel. 144, Last updated, Version 1) XX DE Influenza A virus (A/New Hampshire/42/2019(H1N1)) segment 7 matrix protein DE 2 (M2) and matrix protein 1 (M1) genes, complete cds. XX KW . XX OS Influenza A virus OC Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Insthoviricetes; OC Articulavirales; Orthomyxoviridae; Alphainfluenzavirus. XX RN [1] RP 1-1002 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT "Influenza Sequencing Activity group"; RL Unpublished. XX RN [2] RP 1-1002 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT ; RL Submitted (09-MAR-2020) to the INSDC. RL WHO Collaborating Center for Surveillance, Epidemiology and Control of RL Influenza, Influenza Division, Centers for Disease Control and Prevention, RL 1600 Clifton Road, N.E., Atlanta, GA 30333, USA XX DR MD5; 450785b1294558cce6ba4fa395c2af82. XX CC ##FluData-START## CC EPI_ISOLATE_ID :: EPI_ISL_409137 CC NAME :: A/New Hampshire/42/2019 CC TYPE :: H1N1 CC Segment_name :: M CC HOST_AGE :: 56 CC HOST_GENDER :: F CC PASSAGE :: Original CC LOCATION :: United States / New Hampshire CC COLLECT_DATE :: 16-Dec-2019 CC Lineage :: A(H1N1)pdm09 CC SPECIMEN_ID :: 1912300011 ORIGINAL CC SENDER_LAB :: New Hampshire Public Health Laboratories CC SEQLAB_SAMPLE_ID :: 3026054568 CC EPI_SEQUENCE_ID :: EPI1683958 CC ##FluData-END## XX FH Key Location/Qualifiers FH FT source 1..1002 FT /organism="Influenza A virus" FT /segment="7" FT /host="Homo sapiens" FT /strain="A/New Hampshire/42/2019" FT /serotype="H1N1" FT /mol_type="viral cRNA" FT /country="USA:New Hampshire" FT /collection_date="16-Dec-2019" FT /db_xref="taxon:11320" FT gene 14..995 FT /gene="M2" FT CDS join(14..39,728..995) FT /codon_start=1 FT /gene="M2" FT /product="matrix protein 2" FT /protein_id="QIJ23518.1" FT /translation="MSLLTEVETPTRSEWECRCSGSNDPLVIAANIIGILHLILWITDR FT LFFKCIYRRFKYGLKRGPSTEGVPDSMREEYQQEQQSAVDVDDGHFVNIELE" FT gene 14..772 FT /gene="M1" FT CDS 14..772 FT /codon_start=1 FT /gene="M1" FT /product="matrix protein 1" FT /protein_id="QIJ23517.1" FT /translation="MSLLTEVETYVLSIIPSGPLKAEIAQRLESVFAGKNTDLEALMEW FT LKTRPILSPLTKGILGFVFTLTVPSERGLQRRRFIQNALNGNGDPNNMDRAVKLYKKLK FT REITFHGAKEVSLSYSTGALASCMGLIYNRMGTVTTEAAFGLVCATCEQIADSQHRSHR FT QMATTTNPLIRHENRMVLASTTAKAMEQVAGSSEQAAEAMEVANKTRQMVHAMRTIGTH FT PSSSAGLRDDLLENLQAYQKRMGVQMQRFK" XX SQ Sequence 1002 BP; 301 A; 209 C; 252 G; 240 T; 0 other; tagatgttta aagatgagtc ttctaaccga ggtcgaaacg tacgttcttt ctatcatccc 60 gtcaggcccc ctcaaagccg agatcgcaca gagactggaa agtgtctttg caggaaagaa 120 cacagatctt gaggctctca tggaatggct aaagacaaga ccaatcttgt cacctctgac 180 taagggaatt ttaggatttg tgttcacgct caccgtgccc agtgagcgag gactgcagcg 240 tagacgcttt atccaaaatg ccctaaatgg aaatggggac ccgaacaaca tggatagagc 300 agttaaacta tacaagaaac tcaaaagaga aataacgttc catggggcca aggaggtgtc 360 actaagctat tcaactggtg cacttgcaag ttgcatgggc ctcatataca acaggatggg 420 aacagtgacc acagaagctg ctttcggtct agtttgtgcc acttgtgaac agattgctga 480 ttcacagcat cggtctcaca gacaaatggc tactaccaca aatccactaa tcaggcatga 540 aaacagaatg gtgctggcta gcactacggc aaaggctatg gaacaggtgg ctggatcgag 600 tgaacaggca gcggaggcca tggaggttgc taataagact aggcagatgg tacatgcaat 660 gagaactatt ggaactcatc ctagctccag tgctggtcta agagatgacc ttcttgaaaa 720 tttgcaggcc taccagaagc gaatgggagt gcagatgcag cggttcaaat gatcctctcg 780 tcattgcagc aaacatcatt gggatcttgc acctgatatt gtggattact gatcgtcttt 840 ttttcaaatg catttatcgt cgctttaaat acggtttgaa aagagggcct tctacggaag 900 gagtgcctga ttccatgagg gaagaatatc aacaggagca gcagagtgct gtggatgttg 960 acgatggtca ttttgtcaac atagagctag agtaaaaaac ta 1002 // ID MT167077; SV 1; linear; viral cRNA; STD; VRL; 865 BP. XX AC MT167077; XX PR Project:PRJNA37813; XX DT 17-MAR-2020 (Rel. 144, Created) DT 17-MAR-2020 (Rel. 144, Last updated, Version 1) XX DE Influenza A virus (A/New Hampshire/42/2019(H1N1)) segment 8 nuclear export DE protein (NEP) and nonstructural protein 1 (NS1) genes, complete cds. XX KW . XX OS Influenza A virus OC Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Insthoviricetes; OC Articulavirales; Orthomyxoviridae; Alphainfluenzavirus. XX RN [1] RP 1-865 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT "Influenza Sequencing Activity group"; RL Unpublished. XX RN [2] RP 1-865 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT ; RL Submitted (09-MAR-2020) to the INSDC. RL WHO Collaborating Center for Surveillance, Epidemiology and Control of RL Influenza, Influenza Division, Centers for Disease Control and Prevention, RL 1600 Clifton Road, N.E., Atlanta, GA 30333, USA XX DR MD5; eec98ce5af1e226e102ce97db169ae1a. XX CC ##FluData-START## CC EPI_ISOLATE_ID :: EPI_ISL_409137 CC NAME :: A/New Hampshire/42/2019 CC TYPE :: H1N1 CC Segment_name :: NS CC HOST_AGE :: 56 CC HOST_GENDER :: F CC PASSAGE :: Original CC LOCATION :: United States / New Hampshire CC COLLECT_DATE :: 16-Dec-2019 CC Lineage :: A(H1N1)pdm09 CC SPECIMEN_ID :: 1912300011 ORIGINAL CC SENDER_LAB :: New Hampshire Public Health Laboratories CC SEQLAB_SAMPLE_ID :: 3026054568 CC EPI_SEQUENCE_ID :: EPI1683957 CC ##FluData-END## XX FH Key Location/Qualifiers FH FT source 1..865 FT /organism="Influenza A virus" FT /segment="8" FT /host="Homo sapiens" FT /strain="A/New Hampshire/42/2019" FT /serotype="H1N1" FT /mol_type="viral cRNA" FT /country="USA:New Hampshire" FT /collection_date="16-Dec-2019" FT /db_xref="taxon:11320" FT gene 15..852 FT /gene="NEP" FT /gene_synonym="NS2" FT CDS join(15..44,517..852) FT /codon_start=1 FT /gene="NEP" FT /gene_synonym="NS2" FT /product="nuclear export protein" FT /note="nonstructural protein 2" FT /protein_id="QIJ23520.1" FT /translation="MESNTMSSFQDILMRMSKMQLGSSSEDLSGMVTRFESLKIYRDSL FT GEAVMRMGDLHYLQSRNEKWREQLGQKFEEIRWLIEEIRHRLKATENSFEQITFMQALQ FT LLLEVEQEIRAFSFQFI" FT gene 15..674 FT /gene="NS1" FT CDS 15..674 FT /codon_start=1 FT /gene="NS1" FT /product="nonstructural protein 1" FT /protein_id="QIJ23519.1" FT /translation="MESNTMSSFQVDCFLWHIRKRFADNGLGDAPFLDRLRRDQKSLKG FT RGNTLGLDIKTATLVGKQIVEWILKEESSETLRMAIASVPTSRYISDMTLEEMSRDWFM FT LMPRQKIIGPLCVRLDQAVMDKNIVLEANFSVIFNRLETLVLLRAFTEEGTIVGEISPL FT PSLPGHTYEDVKNAVGVLIGGLEWNGNTVRVSENIQRFAWRSCDENGRPSLPPEQK" XX SQ Sequence 865 BP; 279 A; 164 C; 206 G; 216 T; 0 other; gtgacaaaaa cataatggaa tccaacacca tgtcaagctt tcaggtagac tgttttcttt 60 ggcatattcg caagcgattt gcagacaatg gattgggtga tgccccattc cttgatcggc 120 tacgccgaga tcaaaagtcc ttaaaaggaa gaggcaacac ccttggcctc gacatcaaaa 180 cagccactct tgttgggaaa caaattgtgg aatggatttt gaaagaggaa tccagcgaga 240 cacttagaat ggcaattgca tctgtaccta cttcgcgtta catttctgac atgaccctcg 300 aggaaatgtc acgagactgg ttcatgctta tgcctaggca aaagataata ggccctcttt 360 gcgtgcgatt ggaccaggcg gtcatggata agaacatagt actggaagca aacttcagtg 420 taatcttcaa ccgattagag accttggtac tactaagggc tttcactgag gagggaacaa 480 tagttggaga aatttcacca ttaccttctc ttccaggaca tacttatgag gatgtcaaaa 540 atgcagttgg ggtcctcatc ggaggacttg agtggaatgg taacacggtt cgagtctctg 600 aaaatataca gagattcgct tggagaagct gtgatgagaa tgggagacct tcactacctc 660 cagagcagaa atgagaagtg gcgggaacaa ttgggacaga aatttgagga aataaggtgg 720 ttaattgaag aaatacgaca cagattgaaa gcgacagaga atagtttcga acaaataaca 780 tttatgcaag ccttacaact actgcttgaa gtagagcaag agataagagc tttctcgttt 840 cagtttattt aatgataaaa aacac 865 // ID MT167078; SV 1; linear; viral cRNA; STD; VRL; 2316 BP. XX AC MT167078; XX PR Project:PRJNA37813; XX DT 17-MAR-2020 (Rel. 144, Created) DT 17-MAR-2020 (Rel. 144, Last updated, Version 1) XX DE Influenza A virus (A/Maryland/01/2020(H1N1)) segment 1 polymerase PB2 (PB2) DE gene, complete cds. XX KW . XX OS Influenza A virus OC Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Insthoviricetes; OC Articulavirales; Orthomyxoviridae; Alphainfluenzavirus. XX RN [1] RP 1-2316 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT "Influenza Sequencing Activity group"; RL Unpublished. XX RN [2] RP 1-2316 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT ; RL Submitted (09-MAR-2020) to the INSDC. RL WHO Collaborating Center for Surveillance, Epidemiology and Control of RL Influenza, Influenza Division, Centers for Disease Control and Prevention, RL 1600 Clifton Road, N.E., Atlanta, GA 30333, USA XX DR MD5; 4a9b79bbf80303a71040ceba88589d40. XX CC ##FluData-START## CC EPI_ISOLATE_ID :: EPI_ISL_409224 CC NAME :: A/Maryland/01/2020 CC TYPE :: H1N1 CC Segment_name :: PB2 CC HOST_AGE :: 84 CC HOST_GENDER :: M CC PASSAGE :: Original CC LOCATION :: United States / Maryland CC COLLECT_DATE :: 01-Jan-2020 CC Lineage :: A(H1N1)pdm09 CC RESIST_TO_OSELTAMIVIR :: Sensitive CC RESIST_TO_ZANAMVIR :: Sensitive CC SPECIMEN_ID :: A20000268 ORIGINAL CC SENDER_LAB :: Maryland Department of Health and Mental CC Hygiene CC SEQLAB_SAMPLE_ID :: 3026054656 CC EPI_SEQUENCE_ID :: EPI1684635 CC ##FluData-END## XX FH Key Location/Qualifiers FH FT source 1..2316 FT /organism="Influenza A virus" FT /segment="1" FT /host="Homo sapiens" FT /strain="A/Maryland/01/2020" FT /serotype="H1N1" FT /mol_type="viral cRNA" FT /country="USA:Maryland" FT /collection_date="01-Jan-2020" FT /db_xref="taxon:11320" FT gene 16..2295 FT /gene="PB2" FT CDS 16..2295 FT /codon_start=1 FT /gene="PB2" FT /product="polymerase PB2" FT /protein_id="QIJ23521.1" FT /translation="MERIKELRDLMSQSRTREILTKTTVDHMAIIKKYTSGRQEKNPAL FT RMKWMMAMKYPITADKRIMDIIPERNEQGQTLWSKINDAGSDRVMVSPLAVTWWNRNGP FT TTSTVHYPKVYKTYFEKVERLKHGTFGPVHFRNQVKIRRRVDTNPGHADLSAKEAQDVI FT MEVVFPNEVGARILTSESQLAITKEKKEELQNCKIAPLMVAYMLERELVRKTRFLPVAG FT GTSSVYIEVLHLTQGTCWEQMYTPGGEVRNDDVDQSLIIAARNIVRRAAVSTDPLASLL FT EMCHSTQIGGVKMVDILKQNPTEEQAVDICKAAIGLRISSSFSFGGFTFKRTSGSSVKK FT EEEMLTGNLQTLKLRVHEGYEEFTMVGRRATAILRKATRRLIQLIVSGRDEQSIAEAII FT VAMVFSQEDCMIKAVRGDLNFVNRANQRLNPMHQLLRHFQKDAKVLFQNWGIETIDNVM FT GMIGILPDMTPSTEMSLRGIRVSKMGVDEYSSTERVVVSIDRFLRVRDQRGNVLLSPEE FT VSETQGTEKLTITYSSSMMWEINGPESVLVNTYQWIIRNWEIVKIQWSQDPTMLYNKME FT FEPFQSLVPKATRSRYSGFVRTLFQQMRDVLGTFDTVQIIKLLPFAAAPPEQSRMQFSS FT LTVNVRGSGLRILVRGNSPAFNYNKATKRLTILGKDAGALTEDPDEGTSGVESAVLRGF FT LILGKEDKRYGPALSINELSNLAKGEKANVLIGQGDIVLVMKRKRDSSILTDSQTATKR FT IRMAIN" XX SQ Sequence 2316 BP; 795 A; 433 C; 583 G; 504 T; 1 other; tcaaatatat tcaatatgga gagaataaaa gagctgagag atctaatgtc gcagtcccgc 60 actcgcgaga tactcactaa gaccactgtg gaccatatgg ccatcatcaa aaagtacaca 120 tcgggaaggc aagagaagaa ccccgcgctc agaatgaagt ggatgatggc aatgaaatac 180 ccaattacgg cagacaagag aataatggac ataatcccag agaggaatga acaaggacaa 240 accctctgga gcaaaataaa cgatgctgga tcagaccgag tgatggtatc acctctagca 300 gtaacatggt ggaataggaa tggtccaaca acaagtacag ttcattaccc taaggtatat 360 aaaacttatt tcgaaaaggt cgaaaggttg aaacatggta ccttcggccc tgtccacttc 420 agaaatcaag ttaaaataag gaggagagtt gatacaaacc ctggccatgc agatctcagt 480 gccaaggagg cacaggatgt gattatggaa gttgttttcc caaatgaagt gggggcaaga 540 atactgacat cagagtcaca gctggcaata acaaaagaga agaaagaaga gctccagaat 600 tgtaaaattg ctcccttgat ggtggcgtac atgctagaaa gagaattggt ccgtaaaaca 660 aggtttctcc cggtagccgg tgggacaagc agtgtttata ttgaggtgtt gcacttgacc 720 caagggacgt gctgggagca gatgtacact ccaggaggag aagtgagaaa tgatgatgtt 780 gaccaaagct tgattatcgc tgctagaaac atagtaagaa gagcagcagt gtcaacagac 840 ccattagcat ctctcttgga aatgtgccac agcacacaga ttggaggtgt gaagatggtg 900 gacatcctta aacagaatcc aactgaggag caagccgtag acatatgcaa ggcagcaata 960 gggttgagga tcagctcatc tttcagtttt ggtgggttca ctttcaaaag gacaagcgga 1020 tcatcagtca agaaagaaga agaaatgcta acgggcaacc tccaaacact gaaattaaga 1080 gtacatgaag ggtatgaaga attcacaatg gttgggagaa gagcaacagc tattctcaga 1140 aaggcaacca ggagattgat ccaattaata gtaagcggga gagacgagca gtcaatagct 1200 gaagcaataa ttgtggccat ggtattctca caagaggatt gcatgatcaa agcagttagg 1260 ggcgatctga actttgtcaa tagggcaaac cagagactga atcccatgca ccaactcttg 1320 aggcatttcc aaaaagatgc aaaagtgctt ttccagaact ggggaattga aaccatcgac 1380 aatgtgatgg gaatgatcgg aatactgccc gacatgaccc caagtacgga gatgtcactg 1440 agaggaataa gagtcagcaa gatgggagta gatgaatact ccagcacgga gagagtggta 1500 gtgagtattg accgattttt gagggttaga gatcaaagag gaaacgtact gttgtctccc 1560 gaagaagtta gtgaaacgca aggaactgag aagttaacaa taacttattc gtcatcaatg 1620 atgtgggaga tcaacggccc tgagtcagtg ctagtcaaca cttatcaatg gataatcaga 1680 aactgggaaa ttgtgaaaat tcaatggtca caagacccca caatgttata caacaaaatg 1740 gaatttgaac catttcagtc tcttgttcct aaggcaacca gaagccggta cagtggattc 1800 gtaaggacac tgttccagca aatgagggat gtgcttggga catttgacac tgtccaaata 1860 ataaaacttc tcccctttgc tgctgctcca ccagaacaga gcaggatgca attttcttca 1920 ttgactgtga atgtgagagg atcagggtta aggatactgg taagaggcaa ttctccagca 1980 ttcaattaca ayaaggcaac caaacgactt acgattcttg gaaaggatgc aggtgcattg 2040 actgaagatc cagatgaagg cacatctggg gtggagtctg ctgtcctgag aggattcctc 2100 attttaggca aagaagacaa gagatatggc ccagcattaa gcatcaatga actgagcaat 2160 cttgcaaaag gagagaaagc taatgtgcta attgggcagg gggacatagt gttagtaatg 2220 aaacgaaaac gggactctag catacttact gacagccaga cagcgaccaa aagaattcgg 2280 atggccatca attagtgtcg aattgtttaa aaacga 2316 // ID MT167079; SV 1; linear; viral cRNA; STD; VRL; 2208 BP. XX AC MT167079; XX PR Project:PRJNA37813; XX DT 17-MAR-2020 (Rel. 144, Created) DT 17-MAR-2020 (Rel. 144, Last updated, Version 1) XX DE Influenza A virus (A/Maryland/01/2020(H1N1)) segment 3 polymerase PA (PA) DE and PA-X protein (PA-X) genes, complete cds. XX KW . XX OS Influenza A virus OC Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Insthoviricetes; OC Articulavirales; Orthomyxoviridae; Alphainfluenzavirus. XX RN [1] RP 1-2208 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT "Influenza Sequencing Activity group"; RL Unpublished. XX RN [2] RP 1-2208 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT ; RL Submitted (09-MAR-2020) to the INSDC. RL WHO Collaborating Center for Surveillance, Epidemiology and Control of RL Influenza, Influenza Division, Centers for Disease Control and Prevention, RL 1600 Clifton Road, N.E., Atlanta, GA 30333, USA XX DR MD5; 7ed1bb08e2ae48bdf72f2302c6074bb1. XX CC ##FluData-START## CC EPI_ISOLATE_ID :: EPI_ISL_409224 CC NAME :: A/Maryland/01/2020 CC TYPE :: H1N1 CC Segment_name :: PA CC HOST_AGE :: 84 CC HOST_GENDER :: M CC PASSAGE :: Original CC LOCATION :: United States / Maryland CC COLLECT_DATE :: 01-Jan-2020 CC Lineage :: A(H1N1)pdm09 CC RESIST_TO_OSELTAMIVIR :: Sensitive CC RESIST_TO_ZANAMVIR :: Sensitive CC SPECIMEN_ID :: A20000268 ORIGINAL CC SENDER_LAB :: Maryland Department of Health and Mental CC Hygiene CC SEQLAB_SAMPLE_ID :: 3026054656 CC EPI_SEQUENCE_ID :: EPI1684634 CC ##FluData-END## XX FH Key Location/Qualifiers FH FT source 1..2208 FT /organism="Influenza A virus" FT /segment="3" FT /host="Homo sapiens" FT /strain="A/Maryland/01/2020" FT /serotype="H1N1" FT /mol_type="viral cRNA" FT /country="USA:Maryland" FT /collection_date="01-Jan-2020" FT /db_xref="taxon:11320" FT gene 13..2163 FT /gene="PA" FT CDS 13..2163 FT /codon_start=1 FT /gene="PA" FT /product="polymerase PA" FT /protein_id="QIJ23522.1" FT /translation="MEDFVRQCFNPMIVELAEKAMKEYGEDPKIETNKFAAICTHLEVC FT FMYSDFHFIDERGESIIVESGDPNALLKHRFEIIEGRDRIMAWTVVNSICNTTGIEKPK FT FLPDLYDYKENRFIEIGVTRREVHIYYLEKANKIKSEKTHIHIFSFTGEEMATKADYTL FT DEESRARIKTRLFTIRQEMASRSLWDSFRQSERGEETIEEKFEITGTMRRLADQSLPPN FT FSSLENFRAYVDGFEPNGCIEGKLSQMSKEVNAKIEPFLRTTPRPLRLPDGPLCHQRSK FT FLLMDALKLSIEDPSHEGEGIPLYDAIKCMKTFFGWKEPKIVKPHEKGVNPNYLMAWKQ FT VLAELQDIENEEKIPRTKNMKKTSQLKWALGENMAPEKVDFDDCKDVGDLKQYDSDEPE FT PRSLASWVQNEFNKACELTDSSWIELDEIGEDVAPIEHIASMRRNYFTAEVSHCRATEY FT IMKGVYINTALLNASCAAMDDFQLIPMISKCRTKEGRRKTNLYGFIIKGRSHLRNDTDV FT VNFVSMEFSLTDPRLEPHKWEKYCVLEIGDMLLRTAIGQVSRPMFLYVRTNGTSKIKMK FT WGMEMRRCLLQSLQQIESMIEAESSVKEKDMTKEFFENKSETWPIGESPRGVEEGSIGK FT VCRTLLAKSVFNSLYASPQLEGFSAESRKLLLIVQALRDNLEPGTFDLGGLYEAIEECL FT INDPWVLLNASWFNSFLTHALK" FT gene 13..712 FT /gene="PA-X" FT CDS join(13..582,584..712) FT /codon_start=1 FT /ribosomal_slippage FT /gene="PA-X" FT /product="PA-X protein" FT /protein_id="QIJ23523.1" FT /translation="MEDFVRQCFNPMIVELAEKAMKEYGEDPKIETNKFAAICTHLEVC FT FMYSDFHFIDERGESIIVESGDPNALLKHRFEIIEGRDRIMAWTVVNSICNTTGIEKPK FT FLPDLYDYKENRFIEIGVTRREVHIYYLEKANKIKSEKTHIHIFSFTGEEMATKADYTL FT DEESRARIKTRLFTIRQEMASRSLWDSFVSPKEAKKQLKKSLKLQELCAGLPTKVSHQT FT SPALKTSEPM" XX SQ Sequence 2208 BP; 742 A; 417 C; 517 G; 532 T; 0 other; tactgatcca aaatggaaga ctttgtgcga caatgcttca atccaatgat cgtcgagctt 60 gcggaaaagg caatgaaaga atatggggaa gaccccaaaa ttgaaactaa taagtttgct 120 gcaatttgca cacatttgga agtttgtttc atgtattcgg atttccattt cattgatgaa 180 cggggtgaat caataattgt agaatctggt gacccaaatg cactattgaa gcaccgattt 240 gagataattg aaggaagaga ccgaatcatg gcttggacag tggtgaacag tatatgtaac 300 acaacaggga tagagaagcc taaatttctt cctgatttgt atgattacaa agagaaccgg 360 ttcattgaaa ttggagtaac acggagagaa gttcacatat attacctaga gaaagccaac 420 aaaataaaat ctgagaagac acacattcac atcttttcat tcactggaga ggagatggcc 480 accaaagcgg actacactct tgacgaagaa agcagagcaa gaatcaaaac taggcttttc 540 actataagac aagaaatggc cagtaggagt ctatgggatt cctttcgtca gtccgaaaga 600 ggcgaagaaa caattgaaga aaagtttgaa attacaggaa ctatgcgcag gcttgccgac 660 caaagtctcc caccaaactt ctccagcctt gaaaacttca gagcctatgt agatggattc 720 gagccgaacg gctgcattga gggtaagctt tcccaaatgt caaaagaagt gaacgccaaa 780 attgaaccat tcttgaggac gacaccacgc cctctcagat tacctgatgg acctctttgc 840 catcagcggt caaagttcct gctgatggat gctctgaaat taagcattga agacccgagt 900 cacgaggggg aaggaatacc actatatgat gcaatcaaat gcatgaagac attctttggc 960 tggaaagagc ctaaaatagt caaaccacat gagaaaggcg taaatcccaa ttacctcatg 1020 gcttggaagc aggtgctagc agagctacag gacattgaaa atgaagagaa aatcccaagg 1080 acaaagaaca tgaagaaaac aagccaattg aagtgggcac tcggtgaaaa tatggcacct 1140 gaaaaagtgg actttgatga ctgtaaagat gttggagacc ttaaacagta tgacagtgat 1200 gagccagagc ccagatctct agcaagctgg gtccaaaatg aattcaataa ggcatgtgaa 1260 ttgactgatt caagctggat agaacttgat gaaataggag aagatgttgc cccaattgaa 1320 catatagcaa gcatgaggag gaactatttt acagcagaag tgtctcactg cagggctact 1380 gaatacataa tgaagggagt gtacataaat acggccttgc ttaatgcatc ctgtgcagcc 1440 atggatgact ttcagctgat tccaatgata agcaaatgta ggaccaaaga aggaagacgg 1500 aaaacaaacc tttatgggtt cattataaag ggaaggtctc atttgagaaa tgatactgat 1560 gtggtgaact ttgtaagtat ggagttctca ctcactgatc caagactgga accacacaaa 1620 tgggaaaaat actgtgttct tgaaatagga gacatgctat tgaggactgc gataggtcaa 1680 gtgtcgaggc ccatgttcct atatgtgaga accaatggaa cctccaagat caagatgaaa 1740 tggggcatgg aaatgaggcg ctgccttctt caatctcttc aacagattga gagcatgatt 1800 gaagccgagt cttctgtcaa agagaaagac atgaccaagg aattctttga aaacaaatcg 1860 gaaacatggc caatcggaga atcacccagg ggagtggagg aaggctctat tggaaaagtg 1920 tgcagaacct tactggcaaa atctgtgttc aacagtctat atgcttctcc acaacttgag 1980 gggttttcgg ctgaatcaag aaaattgctt ctcattgttc aggcacttag ggacaacctg 2040 gaacctggaa cctttgatct tggggggcta tatgaagcaa tcgaggagtg cttgattaat 2100 gatccctggg ttttgcttaa tgcatcttgg ttcaactcct tcctcacaca tgcactgaag 2160 tagttgtggc aatgctacta tttgctatcc atattgtcca aaaaagta 2208 // ID MT167080; SV 1; linear; viral cRNA; STD; VRL; 1752 BP. XX AC MT167080; XX PR Project:PRJNA37813; XX DT 17-MAR-2020 (Rel. 144, Created) DT 17-MAR-2020 (Rel. 144, Last updated, Version 1) XX DE Influenza A virus (A/Maryland/01/2020(H1N1)) segment 4 hemagglutinin (HA) DE gene, complete cds. XX KW . XX OS Influenza A virus OC Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Insthoviricetes; OC Articulavirales; Orthomyxoviridae; Alphainfluenzavirus. XX RN [1] RP 1-1752 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT "Influenza Sequencing Activity group"; RL Unpublished. XX RN [2] RP 1-1752 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT ; RL Submitted (09-MAR-2020) to the INSDC. RL WHO Collaborating Center for Surveillance, Epidemiology and Control of RL Influenza, Influenza Division, Centers for Disease Control and Prevention, RL 1600 Clifton Road, N.E., Atlanta, GA 30333, USA XX DR MD5; 90d42ba5f3601696e1ad55255730eec2. XX CC ##FluData-START## CC EPI_ISOLATE_ID :: EPI_ISL_409224 CC NAME :: A/Maryland/01/2020 CC TYPE :: H1N1 CC Segment_name :: HA CC HOST_AGE :: 84 CC HOST_GENDER :: M CC PASSAGE :: Original CC LOCATION :: United States / Maryland CC COLLECT_DATE :: 01-Jan-2020 CC Lineage :: A(H1N1)pdm09 CC RESIST_TO_OSELTAMIVIR :: Sensitive CC RESIST_TO_ZANAMVIR :: Sensitive CC SPECIMEN_ID :: A20000268 ORIGINAL CC SENDER_LAB :: Maryland Department of Health and Mental CC Hygiene CC SEQLAB_SAMPLE_ID :: 3026054656 CC EPI_SEQUENCE_ID :: EPI1684637 CC ##FluData-END## XX FH Key Location/Qualifiers FH FT source 1..1752 FT /organism="Influenza A virus" FT /segment="4" FT /host="Homo sapiens" FT /strain="A/Maryland/01/2020" FT /serotype="H1N1" FT /mol_type="viral cRNA" FT /country="USA:Maryland" FT /collection_date="01-Jan-2020" FT /db_xref="taxon:11320" FT gene 21..1721 FT /gene="HA" FT CDS 21..1721 FT /codon_start=1 FT /gene="HA" FT /product="hemagglutinin" FT /function="receptor binding and fusion protein" FT /protein_id="QIJ23524.1" FT /translation="MKAILVVLLYTFTTANADTLCIGYHANNSTDTVDTVLEKNVTVTH FT SVNLLEDKHNGKLCKLRGVAPLHLGKCNIAGWILGNPECESLSTARSWSYIVETSNSDN FT GTCYPGDFINYEELREQLSSVSSFERFEIFPKTSSWPNHDSDKGVTAACPHAGAKSFYK FT NLIWLVKKGNSYPKLNQTYINDKGKEVLVLWGIHHPPTIAAQESLYQNADAYVFVGTSR FT YSKKFKPEIATRPKVRDQEGRMNYYWTLVEPGDKITFEATGNLVVPRYAFTMERDAGSG FT IIISDTPVHDCNTTCQTPEGAINTSLPFQNVHPITIGKCPKYVKSTKLRLATGLRNVPS FT IQSRGLFGAIAGFIEGGWTGMVDGWYGYHHQNEQGSGYAADLKSTQNAIDKITNKVNSV FT IEKMNTQFTAVGKEFNHLEKRIENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSN FT VKNLYEKVRNQLKNNAKEIGNGCFEFYHKCDNTCMESVKNGTYDYPKYSEEAKLNREKI FT DGVKLESTRIYQILAIYSTVASSLVLVVSLGAISFWMCSNGSLQCRICI" FT sig_peptide 21..71 FT /gene="HA" FT mat_peptide 72..1052 FT /gene="HA" FT /product="HA1" FT mat_peptide 1053..1718 FT /gene="HA" FT /product="HA2" XX SQ Sequence 1752 BP; 627 A; 327 C; 387 G; 411 T; 0 other; ggaaaacaaa agcaacaaaa atgaaggcaa tactagtagt tctgctgtat acatttacaa 60 ccgcaaatgc agacacatta tgtataggtt atcatgcgaa caattcaaca gacactgtag 120 acacagtact agaaaagaat gtaacagtaa cacactctgt caatcttctg gaagacaagc 180 ataacggaaa actatgcaaa ctaagagggg tagccccatt gcatttgggt aaatgtaaca 240 ttgctggctg gatcctggga aatccagagt gtgaatcact ctccacagca aggtcatggt 300 cctacattgt ggaaacatct aattcagaca atggaacgtg ttacccagga gatttcatca 360 attatgagga gctaagagag caattgagct cagtgtcatc atttgaaagg tttgaaatat 420 tccccaagac aagttcatgg cctaatcatg actcggacaa aggtgtaacg gcagcatgtc 480 ctcacgctgg agcaaaaagc ttctacaaaa acttgatatg gctggttaaa aaaggaaatt 540 catacccaaa gctcaaccaa acctacatta atgataaagg gaaagaagtc ctcgtgctgt 600 ggggcattca ccatccacct actattgctg cccaagaaag tctctatcag aatgcagatg 660 catatgtttt tgtggggaca tcaagataca gcaagaagtt caagccggaa atagcaacaa 720 gacccaaagt gagggatcaa gaagggagaa tgaactatta ctggacacta gtagaaccgg 780 gagacaaaat aacattcgaa gcaactggaa atctagtggt accgagatat gcattcacaa 840 tggaaagaga tgctggatct ggtattatca tttcagatac accagtccac gattgcaata 900 caacttgtca gacacccgag ggtgctataa acaccagcct cccatttcag aatgtacatc 960 cgattacaat tgggaaatgt ccaaagtatg taaaaagcac aaaattgaga ctggccacag 1020 gattgaggaa tgtcccgtct attcaatcta gaggcctatt cggggccatt gctggcttca 1080 ttgaaggggg gtggacaggg atggtagatg gatggtacgg ttatcaccat caaaatgagc 1140 aggggtcagg atatgcagcc gatctgaaga gcacacaaaa tgccattgat aagattacta 1200 acaaagtaaa ttctgttatt gaaaagatga atacacagtt cacagcagtg ggtaaagagt 1260 tcaaccacct tgaaaaaaga atagagaatc taaataaaaa agttgatgat ggtttcctgg 1320 acatttggac ttacaatgcc gagctgttgg ttctactgga aaacgaaaga actttggact 1380 atcacgattc aaatgtgaag aacttgtatg aaaaagtaag aaaccagtta aaaaacaatg 1440 ccaaggaaat tggaaacggc tgctttgaat tttaccacaa atgcgacaac acatgcatgg 1500 aaagtgtcaa gaatgggact tatgactacc caaaatactc agaggaagca aaattaaaca 1560 gagaaaaaat agatggagta aagctggaat caacaaggat ctaccagatt ttggcgatct 1620 attcaactgt tgccagttca ttggtactgg tagtctccct gggggcaatc agcttctgga 1680 tgtgctctaa tgggtctcta cagtgtagaa tatgtattta acattaggat ttcagaatca 1740 tgagaaaaac ac 1752 // ID MT167081; SV 1; linear; viral cRNA; STD; VRL; 1540 BP. XX AC MT167081; XX PR Project:PRJNA37813; XX DT 17-MAR-2020 (Rel. 144, Created) DT 17-MAR-2020 (Rel. 144, Last updated, Version 1) XX DE Influenza A virus (A/Maryland/01/2020(H1N1)) segment 5 nucleocapsid protein DE (NP) gene, complete cds. XX KW . XX OS Influenza A virus OC Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Insthoviricetes; OC Articulavirales; Orthomyxoviridae; Alphainfluenzavirus. XX RN [1] RP 1-1540 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT "Influenza Sequencing Activity group"; RL Unpublished. XX RN [2] RP 1-1540 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT ; RL Submitted (09-MAR-2020) to the INSDC. RL WHO Collaborating Center for Surveillance, Epidemiology and Control of RL Influenza, Influenza Division, Centers for Disease Control and Prevention, RL 1600 Clifton Road, N.E., Atlanta, GA 30333, USA XX DR MD5; d95f50a583411bb2f675cf57c6ca38f8. XX CC ##FluData-START## CC EPI_ISOLATE_ID :: EPI_ISL_409224 CC NAME :: A/Maryland/01/2020 CC TYPE :: H1N1 CC Segment_name :: NP CC HOST_AGE :: 84 CC HOST_GENDER :: M CC PASSAGE :: Original CC LOCATION :: United States / Maryland CC COLLECT_DATE :: 01-Jan-2020 CC Lineage :: A(H1N1)pdm09 CC RESIST_TO_OSELTAMIVIR :: Sensitive CC RESIST_TO_ZANAMVIR :: Sensitive CC SPECIMEN_ID :: A20000268 ORIGINAL CC SENDER_LAB :: Maryland Department of Health and Mental CC Hygiene CC SEQLAB_SAMPLE_ID :: 3026054656 CC EPI_SEQUENCE_ID :: EPI1684631 CC ##FluData-END## XX FH Key Location/Qualifiers FH FT source 1..1540 FT /organism="Influenza A virus" FT /segment="5" FT /host="Homo sapiens" FT /strain="A/Maryland/01/2020" FT /serotype="H1N1" FT /mol_type="viral cRNA" FT /country="USA:Maryland" FT /collection_date="01-Jan-2020" FT /db_xref="taxon:11320" FT gene 34..1530 FT /gene="NP" FT CDS 34..1530 FT /codon_start=1 FT /gene="NP" FT /product="nucleocapsid protein" FT /protein_id="QIJ23525.1" FT /translation="MASQGTKRSYEQMETGGERQDTTEIRASVGRMIGGIGRFYIQMCT FT ELKLSDYDGRLIQNSITIERMVLSSFDERRNKYLEEHPSAGKDPKKTGGPIYRRIDGKW FT TRELILYDKEEIRRVWRQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRM FT CSLMQGSTLPRRSGAAGAAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTRVAYERM FT CNILKGKFQTAAQRAMMDQVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVY FT GLAVASGHDFEREGYSLVGIDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFED FT LRVSSFIRGKKVIPRGKLSTRGVQIASNENVETMDSNTLELRSRYWAIRTRSGGNTNQQ FT KASAGQISVQPTFSVQRNLPFERATIMAAFSGNNEGRTSDMRTEIIRMMESAKPEDLSF FT QGRGVFELSDEKATNPIVPSFDMSNEGSYFFGDNAEEYDN" XX SQ Sequence 1540 BP; 529 A; 296 C; 389 G; 326 T; 0 other; gtagataatc actcaatgag tgacatcgaa gccatggcgt ctcaaggcac caaacgatca 60 tatgaacaaa tggagactgg tggggagcgc caggatacca cagaaatcag agcatctgtt 120 ggaagaatga ttggtggaat cgggagattc tacatccaaa tgtgcactga actaaaactc 180 agtgattatg atggacgact aatccagaac agcataacaa tagagaggat ggtgctttct 240 tcttttgatg agagaagaaa taaataccta gaagagcatc caagtgctgg gaaggaccct 300 aagaaaacag gaggacccat ctatagaaga atagacggaa aatggacaag agaactcatc 360 ctttatgaca aagaagaaat aagaagagtt tggcgccaag caaacaatgg cgaagatgca 420 acagcaggtc ttactcatat catgatttgg cattccaatc tgaatgatgc cacatatcag 480 aggacaagag cacttgttcg cactggaatg gatcccagaa tgtgctctct aatgcaaggt 540 tcaacacttc ccagaaggtc tggtgccgca ggtgctgcag taaaaggagt tggaacaata 600 gctatggagt taatcagaat gataaaacgt ggaatcaatg accgaaattt ctggaggggt 660 gaaaatggaa gaaggacaag agttgcttat gaaagaatgt gcaatatcct caaaggaaaa 720 tttcaaacag ctgcccagag ggcaatgatg gatcaagtaa gagaaagtcg aaacccagga 780 aacgctgaga ttgaagacct cattttcctg gcacggtcag cactcattct gagaggatca 840 gttgcacata aatcctgcct gcctgcttgt gtgtatgggc ttgcagtagc aagtggccat 900 gactttgaaa gggaagggta ctcactggtc gggatagacc cattcaaatt actccaaaac 960 agtcaagtgg tcagcctgat gagaccaaat gaaaatccag ctcacaagag tcaattggta 1020 tggatggcat gccactctgc tgcatttgaa gatttaagag tatcaagttt cataagagga 1080 aagaaagtga tcccaagagg aaagctttcc acaagagggg ttcagattgc ttcaaatgag 1140 aatgtggaaa ccatggactc caataccctg gaactaagaa gcagatactg ggccataaga 1200 accagaagtg gaggaaatac caatcaacag aaggcatctg caggccagat cagtgtgcag 1260 cctacattct cagtgcagcg aaatctccct tttgaaagag caaccattat ggcagcattc 1320 agcgggaaca atgaaggacg gacatccgac atgcgaacag aaattataag aatgatggaa 1380 agtgcaaagc cagaggattt gtccttccag gggcggggag tcttcgagct ctcggacgaa 1440 aaggcaacga acccgatcgt gccttccttt gacatgagta atgaagggtc ttatttcttc 1500 ggagacaatg cagaggagta tgacaattga agaaaaatac 1540 // ID MT167082; SV 1; linear; viral cRNA; STD; VRL; 1433 BP. XX AC MT167082; XX PR Project:PRJNA37813; XX DT 17-MAR-2020 (Rel. 144, Created) DT 17-MAR-2020 (Rel. 144, Last updated, Version 1) XX DE Influenza A virus (A/Maryland/01/2020(H1N1)) segment 6 neuraminidase (NA) DE gene, complete cds. XX KW . XX OS Influenza A virus OC Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Insthoviricetes; OC Articulavirales; Orthomyxoviridae; Alphainfluenzavirus. XX RN [1] RP 1-1433 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT "Influenza Sequencing Activity group"; RL Unpublished. XX RN [2] RP 1-1433 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT ; RL Submitted (09-MAR-2020) to the INSDC. RL WHO Collaborating Center for Surveillance, Epidemiology and Control of RL Influenza, Influenza Division, Centers for Disease Control and Prevention, RL 1600 Clifton Road, N.E., Atlanta, GA 30333, USA XX DR MD5; 6913f7256f8e535297b43e15243e5777. XX CC ##FluData-START## CC EPI_ISOLATE_ID :: EPI_ISL_409224 CC NAME :: A/Maryland/01/2020 CC TYPE :: H1N1 CC Segment_name :: NA CC HOST_AGE :: 84 CC HOST_GENDER :: M CC PASSAGE :: Original CC LOCATION :: United States / Maryland CC COLLECT_DATE :: 01-Jan-2020 CC Lineage :: A(H1N1)pdm09 CC RESIST_TO_OSELTAMIVIR :: Sensitive CC RESIST_TO_ZANAMVIR :: Sensitive CC SPECIMEN_ID :: A20000268 ORIGINAL CC SENDER_LAB :: Maryland Department of Health and Mental CC Hygiene CC SEQLAB_SAMPLE_ID :: 3026054656 CC EPI_SEQUENCE_ID :: EPI1684636 CC ##FluData-END## XX FH Key Location/Qualifiers FH FT source 1..1433 FT /organism="Influenza A virus" FT /segment="6" FT /host="Homo sapiens" FT /strain="A/Maryland/01/2020" FT /serotype="H1N1" FT /mol_type="viral cRNA" FT /country="USA:Maryland" FT /collection_date="01-Jan-2020" FT /db_xref="taxon:11320" FT gene 9..1418 FT /gene="NA" FT CDS 9..1418 FT /codon_start=1 FT /gene="NA" FT /product="neuraminidase" FT /protein_id="QIJ23526.1" FT /translation="MNPNQKIITIGSICMTIGMANLILQIGNIISIWVSHSIQTGNQSQ FT IETCNKNVITYENNTWVNQTYVNISNTNSAARQSVASVKLAGNSSLCPVSGWAIYSKDN FT SVRIGSKGDVFVIREPFISCSPLECRTFFLTQGALLNDKHSNGTIKDRSPYRTLMSCPI FT GEVPSPYNSRFESVAWSASACHDGTNWLTIGISGPDSGAVAVLKYNGIITDTIKSWRNN FT ILRTQESECACVNGSCFTIMTDGPSDGQASYKIFRIEKGKIIKSVEMKAPNYHYEECSC FT YPDSSEITCVCRDNWHGSNRPWVSFNQNLEYQMGYICSGVFGDNPRPNDKTGSCGPVSS FT NGANGVKGFSFKYGNGVWIGRTKSISSRKGFEMIWDPNGWTGTDSKFSKKQDIVGINEW FT SGYSGSFVQHPELTGLNCIRPCFWVELIRGRPEENTIWTSGSSISFCGVDSDIVGWSWP FT DGAELPFTIDK" XX SQ Sequence 1433 BP; 464 A; 266 C; 333 G; 370 T; 0 other; agtttaaaat gaatccaaac caaaagataa taaccattgg ctctatctgt atgacaattg 60 gaatggctaa cttaatatta caaattggaa acataatctc aatatgggtt agccactcaa 120 ttcaaaccgg aaaccaaagc cagatcgaaa catgcaataa aaacgtcatt acttatgaaa 180 acaatacttg ggtaaatcag acatatgtta acatcagcaa caccaactct gctgctagac 240 agtcagtggc ttccgtgaaa ttagcgggca actcctctct ctgccctgtc agtggatggg 300 ctatatacag taaagacaac agtgtaagaa tcggttccaa gggggatgtg tttgtcataa 360 gggaaccatt catatcatgc tctcccttgg aatgcagaac cttcttcttg actcaagggg 420 ctttgctaaa tgacaaacat tccaatggaa ccattaaaga cagaagccca tatcgaaccc 480 taatgagctg tcctattggt gaagttccct ctccatacaa ctcaagattt gagtcagtcg 540 cttggtcagc aagtgcttgt catgatggca ccaattggct aacaattgga atttctggcc 600 cagacagtgg ggcagtggct gtgttaaaat acaatggcat aataacagac actatcaaga 660 gttggaggaa caatatattg agaacacaag agtctgaatg tgcatgtgta aatggttctt 720 gctttaccat aatgaccgat ggaccaagtg atggacaggc ctcatacaaa atcttcagaa 780 tagaaaaggg aaagataatc aaatcagtcg aaatgaaagc ccctaattat cactatgagg 840 aatgctcctg ttaccctgat tctagtgaaa tcacatgtgt gtgcagggat aactggcatg 900 gctcgaatcg accgtgggtg tctttcaacc agaatctgga atatcagatg ggatacatat 960 gcagtggggt tttcggagac aatccacgcc ctaatgataa gacaggcagt tgtggtccag 1020 tatcgtctaa tggagcaaat ggggtaaaag gattttcatt caaatacggc aatggtgttt 1080 ggatagggag aactaagagc attagttcaa gaaaaggttt tgagatgatt tgggatccga 1140 atggatggac tgggactgac agtaaattct caaaaaagca agatatcgta ggaataaatg 1200 agtggtcagg gtatagcggg agttttgttc agcatccaga actaacaggg ctgaattgta 1260 taagaccttg cttctgggtt gaactaataa gaggacgacc cgaagagaac acaatctgga 1320 ctagtgggag cagcatatcc ttttgtggtg tagacagtga cattgtgggt tggtcttggc 1380 cagacggtgc tgagttgcca tttaccattg acaagtaatt tgttcaaaaa act 1433 // ID MT167083; SV 1; linear; viral cRNA; STD; VRL; 1002 BP. XX AC MT167083; XX PR Project:PRJNA37813; XX DT 17-MAR-2020 (Rel. 144, Created) DT 17-MAR-2020 (Rel. 144, Last updated, Version 1) XX DE Influenza A virus (A/Maryland/01/2020(H1N1)) segment 7 matrix protein 2 DE (M2) and matrix protein 1 (M1) genes, complete cds. XX KW . XX OS Influenza A virus OC Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Insthoviricetes; OC Articulavirales; Orthomyxoviridae; Alphainfluenzavirus. XX RN [1] RP 1-1002 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT "Influenza Sequencing Activity group"; RL Unpublished. XX RN [2] RP 1-1002 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT ; RL Submitted (09-MAR-2020) to the INSDC. RL WHO Collaborating Center for Surveillance, Epidemiology and Control of RL Influenza, Influenza Division, Centers for Disease Control and Prevention, RL 1600 Clifton Road, N.E., Atlanta, GA 30333, USA XX DR MD5; 450785b1294558cce6ba4fa395c2af82. XX CC ##FluData-START## CC EPI_ISOLATE_ID :: EPI_ISL_409224 CC NAME :: A/Maryland/01/2020 CC TYPE :: H1N1 CC Segment_name :: M CC HOST_AGE :: 84 CC HOST_GENDER :: M CC PASSAGE :: Original CC LOCATION :: United States / Maryland CC COLLECT_DATE :: 01-Jan-2020 CC Lineage :: A(H1N1)pdm09 CC RESIST_TO_OSELTAMIVIR :: Sensitive CC RESIST_TO_ZANAMVIR :: Sensitive CC SPECIMEN_ID :: A20000268 ORIGINAL CC SENDER_LAB :: Maryland Department of Health and Mental CC Hygiene CC SEQLAB_SAMPLE_ID :: 3026054656 CC EPI_SEQUENCE_ID :: EPI1684633 CC ##FluData-END## XX FH Key Location/Qualifiers FH FT source 1..1002 FT /organism="Influenza A virus" FT /segment="7" FT /host="Homo sapiens" FT /strain="A/Maryland/01/2020" FT /serotype="H1N1" FT /mol_type="viral cRNA" FT /country="USA:Maryland" FT /collection_date="01-Jan-2020" FT /db_xref="taxon:11320" FT gene 14..995 FT /gene="M2" FT CDS join(14..39,728..995) FT /codon_start=1 FT /gene="M2" FT /product="matrix protein 2" FT /protein_id="QIJ23528.1" FT /translation="MSLLTEVETPTRSEWECRCSGSNDPLVIAANIIGILHLILWITDR FT LFFKCIYRRFKYGLKRGPSTEGVPDSMREEYQQEQQSAVDVDDGHFVNIELE" FT gene 14..772 FT /gene="M1" FT CDS 14..772 FT /codon_start=1 FT /gene="M1" FT /product="matrix protein 1" FT /protein_id="QIJ23527.1" FT /translation="MSLLTEVETYVLSIIPSGPLKAEIAQRLESVFAGKNTDLEALMEW FT LKTRPILSPLTKGILGFVFTLTVPSERGLQRRRFIQNALNGNGDPNNMDRAVKLYKKLK FT REITFHGAKEVSLSYSTGALASCMGLIYNRMGTVTTEAAFGLVCATCEQIADSQHRSHR FT QMATTTNPLIRHENRMVLASTTAKAMEQVAGSSEQAAEAMEVANKTRQMVHAMRTIGTH FT PSSSAGLRDDLLENLQAYQKRMGVQMQRFK" XX SQ Sequence 1002 BP; 301 A; 209 C; 252 G; 240 T; 0 other; tagatgttta aagatgagtc ttctaaccga ggtcgaaacg tacgttcttt ctatcatccc 60 gtcaggcccc ctcaaagccg agatcgcaca gagactggaa agtgtctttg caggaaagaa 120 cacagatctt gaggctctca tggaatggct aaagacaaga ccaatcttgt cacctctgac 180 taagggaatt ttaggatttg tgttcacgct caccgtgccc agtgagcgag gactgcagcg 240 tagacgcttt atccaaaatg ccctaaatgg aaatggggac ccgaacaaca tggatagagc 300 agttaaacta tacaagaaac tcaaaagaga aataacgttc catggggcca aggaggtgtc 360 actaagctat tcaactggtg cacttgcaag ttgcatgggc ctcatataca acaggatggg 420 aacagtgacc acagaagctg ctttcggtct agtttgtgcc acttgtgaac agattgctga 480 ttcacagcat cggtctcaca gacaaatggc tactaccaca aatccactaa tcaggcatga 540 aaacagaatg gtgctggcta gcactacggc aaaggctatg gaacaggtgg ctggatcgag 600 tgaacaggca gcggaggcca tggaggttgc taataagact aggcagatgg tacatgcaat 660 gagaactatt ggaactcatc ctagctccag tgctggtcta agagatgacc ttcttgaaaa 720 tttgcaggcc taccagaagc gaatgggagt gcagatgcag cggttcaaat gatcctctcg 780 tcattgcagc aaacatcatt gggatcttgc acctgatatt gtggattact gatcgtcttt 840 ttttcaaatg catttatcgt cgctttaaat acggtttgaa aagagggcct tctacggaag 900 gagtgcctga ttccatgagg gaagaatatc aacaggagca gcagagtgct gtggatgttg 960 acgatggtca ttttgtcaac atagagctag agtaaaaaac ta 1002 // ID MT167084; SV 1; linear; viral cRNA; STD; VRL; 865 BP. XX AC MT167084; XX PR Project:PRJNA37813; XX DT 17-MAR-2020 (Rel. 144, Created) DT 17-MAR-2020 (Rel. 144, Last updated, Version 1) XX DE Influenza A virus (A/Maryland/01/2020(H1N1)) segment 8 nuclear export DE protein (NEP) and nonstructural protein 1 (NS1) genes, complete cds. XX KW . XX OS Influenza A virus OC Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Insthoviricetes; OC Articulavirales; Orthomyxoviridae; Alphainfluenzavirus. XX RN [1] RP 1-865 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT "Influenza Sequencing Activity group"; RL Unpublished. XX RN [2] RP 1-865 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT ; RL Submitted (09-MAR-2020) to the INSDC. RL WHO Collaborating Center for Surveillance, Epidemiology and Control of RL Influenza, Influenza Division, Centers for Disease Control and Prevention, RL 1600 Clifton Road, N.E., Atlanta, GA 30333, USA XX DR MD5; eec98ce5af1e226e102ce97db169ae1a. XX CC ##FluData-START## CC EPI_ISOLATE_ID :: EPI_ISL_409224 CC NAME :: A/Maryland/01/2020 CC TYPE :: H1N1 CC Segment_name :: NS CC HOST_AGE :: 84 CC HOST_GENDER :: M CC PASSAGE :: Original CC LOCATION :: United States / Maryland CC COLLECT_DATE :: 01-Jan-2020 CC Lineage :: A(H1N1)pdm09 CC RESIST_TO_OSELTAMIVIR :: Sensitive CC RESIST_TO_ZANAMVIR :: Sensitive CC SPECIMEN_ID :: A20000268 ORIGINAL CC SENDER_LAB :: Maryland Department of Health and Mental CC Hygiene CC SEQLAB_SAMPLE_ID :: 3026054656 CC EPI_SEQUENCE_ID :: EPI1684632 CC ##FluData-END## XX FH Key Location/Qualifiers FH FT source 1..865 FT /organism="Influenza A virus" FT /segment="8" FT /host="Homo sapiens" FT /strain="A/Maryland/01/2020" FT /serotype="H1N1" FT /mol_type="viral cRNA" FT /country="USA:Maryland" FT /collection_date="01-Jan-2020" FT /db_xref="taxon:11320" FT gene 15..852 FT /gene="NEP" FT /gene_synonym="NS2" FT CDS join(15..44,517..852) FT /codon_start=1 FT /gene="NEP" FT /gene_synonym="NS2" FT /product="nuclear export protein" FT /note="nonstructural protein 2" FT /protein_id="QIJ23530.1" FT /translation="MESNTMSSFQDILMRMSKMQLGSSSEDLSGMVTRFESLKIYRDSL FT GEAVMRMGDLHYLQSRNEKWREQLGQKFEEIRWLIEEIRHRLKATENSFEQITFMQALQ FT LLLEVEQEIRAFSFQFI" FT gene 15..674 FT /gene="NS1" FT CDS 15..674 FT /codon_start=1 FT /gene="NS1" FT /product="nonstructural protein 1" FT /protein_id="QIJ23529.1" FT /translation="MESNTMSSFQVDCFLWHIRKRFADNGLGDAPFLDRLRRDQKSLKG FT RGNTLGLDIKTATLVGKQIVEWILKEESSETLRMAIASVPTSRYISDMTLEEMSRDWFM FT LMPRQKIIGPLCVRLDQAVMDKNIVLEANFSVIFNRLETLVLLRAFTEEGTIVGEISPL FT PSLPGHTYEDVKNAVGVLIGGLEWNGNTVRVSENIQRFAWRSCDENGRPSLPPEQK" XX SQ Sequence 865 BP; 279 A; 164 C; 206 G; 216 T; 0 other; gtgacaaaaa cataatggaa tccaacacca tgtcaagctt tcaggtagac tgttttcttt 60 ggcatattcg caagcgattt gcagacaatg gattgggtga tgccccattc cttgatcggc 120 tacgccgaga tcaaaagtcc ttaaaaggaa gaggcaacac ccttggcctc gacatcaaaa 180 cagccactct tgttgggaaa caaattgtgg aatggatttt gaaagaggaa tccagcgaga 240 cacttagaat ggcaattgca tctgtaccta cttcgcgtta catttctgac atgaccctcg 300 aggaaatgtc acgagactgg ttcatgctta tgcctaggca aaagataata ggccctcttt 360 gcgtgcgatt ggaccaggcg gtcatggata agaacatagt actggaagca aacttcagtg 420 taatcttcaa ccgattagag accttggtac tactaagggc tttcactgag gagggaacaa 480 tagttggaga aatttcacca ttaccttctc ttccaggaca tacttatgag gatgtcaaaa 540 atgcagttgg ggtcctcatc ggaggacttg agtggaatgg taacacggtt cgagtctctg 600 aaaatataca gagattcgct tggagaagct gtgatgagaa tgggagacct tcactacctc 660 cagagcagaa atgagaagtg gcgggaacaa ttgggacaga aatttgagga aataaggtgg 720 ttaattgaag aaatacgaca cagattgaaa gcgacagaga atagtttcga acaaataaca 780 tttatgcaag ccttacaact actgcttgaa gtagagcaag agataagagc tttctcgttt 840 cagtttattt aatgataaaa aacac 865 // ID MT167085; SV 1; linear; viral cRNA; STD; VRL; 2316 BP. XX AC MT167085; XX PR Project:PRJNA37813; XX DT 17-MAR-2020 (Rel. 144, Created) DT 17-MAR-2020 (Rel. 144, Last updated, Version 1) XX DE Influenza A virus (A/Maryland/03/2020(H1N1)) segment 1 polymerase PB2 (PB2) DE gene, complete cds. XX KW . XX OS Influenza A virus OC Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Insthoviricetes; OC Articulavirales; Orthomyxoviridae; Alphainfluenzavirus. XX RN [1] RP 1-2316 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT "Influenza Sequencing Activity group"; RL Unpublished. XX RN [2] RP 1-2316 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT ; RL Submitted (09-MAR-2020) to the INSDC. RL WHO Collaborating Center for Surveillance, Epidemiology and Control of RL Influenza, Influenza Division, Centers for Disease Control and Prevention, RL 1600 Clifton Road, N.E., Atlanta, GA 30333, USA XX DR MD5; d36b966aceb1df4f4e28fbca94537391. XX CC ##FluData-START## CC EPI_ISOLATE_ID :: EPI_ISL_409225 CC NAME :: A/Maryland/03/2020 CC TYPE :: H1N1 CC Segment_name :: PB2 CC HOST_AGE :: 82 CC HOST_GENDER :: M CC PASSAGE :: Original CC LOCATION :: United States / Maryland CC COLLECT_DATE :: 03-Jan-2020 CC Lineage :: A(H1N1)pdm09 CC SPECIMEN_ID :: A20000839 ORIGINAL CC SENDER_LAB :: Maryland Department of Health and Mental CC Hygiene CC SEQLAB_SAMPLE_ID :: 3026054658 CC EPI_SEQUENCE_ID :: EPI1684642 CC ##FluData-END## XX FH Key Location/Qualifiers FH FT source 1..2316 FT /organism="Influenza A virus" FT /segment="1" FT /host="Homo sapiens" FT /strain="A/Maryland/03/2020" FT /serotype="H1N1" FT /mol_type="viral cRNA" FT /country="USA:Maryland" FT /collection_date="03-Jan-2020" FT /db_xref="taxon:11320" FT gene 16..2295 FT /gene="PB2" FT CDS 16..2295 FT /codon_start=1 FT /gene="PB2" FT /product="polymerase PB2" FT /protein_id="QIJ23531.1" FT /translation="MERIKELRDLMSQSRTREILTKTTVDHMAIIKKYTSGRQEKNPAL FT RMKWMMAMKYPITADKRIMDIIPERNEQGQTLWSKMNDAGSDRVMVSPLAVTWWNRNGP FT TTSTVHYPKVYKTYFEKVERLKHGTFGPVHFRNQVKIRRRVDTNPGHADLSAKEAQDVI FT MEVVFPNEVGARILTSESQLAITKEKKEELQNCKIAPLMVAYMLERELVRKTRFLPVAG FT GTSSVYIEVLHLTQGTCWEQMYTPGGEVRNDDVDQSLIIAARNIVRRAAVSADPLASLL FT EMCHSTQIGGVKMVDILKQNPTEEQAVDICKAAIGLRISSSFSFGGFTFKRTSGSSVKK FT EEEMLTGNLQTLKLRVHEGYEEFTMVGRRATAILRKATRRLIQLIVSGRDEQSIAEAII FT VAMVFSQEDCMIKAVRGDLNFVNRANQRLNPMHQLLRHFQKDAKVLFQNWGIETIDNVM FT GMIGILPDMTPSTEMSLRGIRVSKMGVDEYSSTERVVVSIDRFLRVRDQRGNVLLSPEE FT VSETQGTEKLTITYSSSMMWEINGPESVLVNTYQWIIRNWEIVKIQWSQDPTMLYNKME FT FEPFQSLVPKATRSRYSGFVRTLFQQMRDVLGTFDTVQIIKLLPFAAAPPEQSRMQFSS FT LTVNVRGSGLRILVRGNSPVFNYNKATKRLTILGKDAGALTEDPDEGTSGVESAVLRGF FT LILGKEDKRYGPALSINELSNLAKGEKANVLIGQGDIVLVMKRKRDSSILTDSQTATKR FT IRMAIN" XX SQ Sequence 2316 BP; 793 A; 435 C; 584 G; 504 T; 0 other; tcaaatatat tcaatatgga gagaataaaa gagctgagag atctaatgtc gcagtcccgc 60 actcgcgaga tactcactaa gaccactgtg gaccatatgg ccatcatcaa aaagtacaca 120 tcgggaaggc aagagaagaa ccccgcgctc agaatgaagt ggatgatggc aatgaaatac 180 ccaattacgg cagacaagag aataatggac ataatcccag agaggaatga acaaggacaa 240 accctctgga gcaaaatgaa cgatgctgga tcagaccgag tgatggtatc acctctggca 300 gtaacatggt ggaataggaa tggtccaaca acaagtacag ttcattaccc taaggtatat 360 aaaacttatt tcgaaaaggt cgaaaggttg aaacatggta ccttcggccc tgtccacttc 420 agaaatcaag ttaaaataag gaggagagtt gatacaaacc ctggccatgc agatctcagt 480 gccaaggagg cacaggatgt gattatggaa gttgttttcc caaatgaagt gggggcaaga 540 atactgacat cagagtcaca gctggcaata acaaaagaga agaaagaaga gctccagaat 600 tgtaaaattg ctcccttgat ggtggcgtac atgctagaaa gagaattggt ccgtaaaaca 660 aggtttctcc cagtagccgg tgggacaagc agtgtttata ttgaggtgtt gcacttgacc 720 caagggacgt gctgggagca gatgtacact ccaggaggag aagtgagaaa tgatgatgtt 780 gaccaaagct tgattatcgc tgctagaaac atagtaagaa gagcagcagt gtcagcagac 840 ccattagcat ctctcttgga aatgtgccac agcacacaga ttggaggtgt gaagatggtg 900 gacatcctta aacagaatcc aactgaggag caagccgtag acatatgcaa agcagcaata 960 gggttgagga tcagctcatc tttcagtttt ggtgggttca ctttcaaaag gacaagcgga 1020 tcatcagtca aaaaagaaga ggaaatgcta acgggcaacc tccaaacact gaaattaaga 1080 gtacatgaag ggtatgaaga attcacaatg gttgggagaa gagcaacagc tattctcaga 1140 aaggcaacca ggagattgat ccaattaata gtaagcggga gagacgagca gtcaatagct 1200 gaagcaataa ttgtggccat ggttttctca caagaggatt gcatgatcaa agcagttagg 1260 ggcgatctga actttgtcaa tagggcaaac cagagactga atcccatgca ccaactcttg 1320 aggcatttcc aaaaagatgc aaaggtgctt ttccagaact ggggaattga aaccatcgac 1380 aatgtgatgg gaatgatcgg aatactgccc gacatgaccc caagcacgga gatgtcactg 1440 agaggaataa gagtcagcaa gatgggagta gatgaatact ccagcacgga gagagtggta 1500 gtgagtattg accgattttt gagggttaga gatcaaagag gaaacgtact attgtctccc 1560 gaagaagtca gtgaaacgca aggaactgag aagttgacaa taacttattc gtcatcaatg 1620 atgtgggaaa tcaacggccc tgagtcagtg ctagtcaaca cttatcaatg gataatcaga 1680 aactgggaaa ttgtgaaaat tcaatggtca caagacccca caatgttata caacaaaatg 1740 gaatttgaac catttcagtc tcttgttcct aaggcaacca gaagccggta cagtggattc 1800 gtaaggacac tgttccagca aatgagggat gtgcttggga catttgacac tgtccaaata 1860 ataaaacttc tcccctttgc tgctgctcca ccagaacaga gcaggatgca attttcttca 1920 ttgactgtga atgtgagagg atcagggtta aggatactgg taagaggcaa ttctccagta 1980 ttcaattaca acaaggcaac caaacgactt acgattcttg gaaaggatgc aggtgcattg 2040 actgaagatc cagatgaagg cacatctggg gtggagtctg ctgtcctgag aggattcctc 2100 attttaggca aagaagacaa gagatatggc ccagcattaa gcatcaatga actgagcaat 2160 cttgcaaaag gagagaaagc taatgtgcta attgggcagg gggacatagt gttggtaatg 2220 aaacgaaaac gggactctag catacttact gacagccaga cagcgaccaa aagaattcga 2280 atggccatca attagtgtcg aattgtttaa aaacga 2316 // ID MT167086; SV 1; linear; viral cRNA; STD; VRL; 2208 BP. XX AC MT167086; XX PR Project:PRJNA37813; XX DT 17-MAR-2020 (Rel. 144, Created) DT 17-MAR-2020 (Rel. 144, Last updated, Version 1) XX DE Influenza A virus (A/Maryland/03/2020(H1N1)) segment 3 polymerase PA (PA) DE and PA-X protein (PA-X) genes, complete cds. XX KW . XX OS Influenza A virus OC Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Insthoviricetes; OC Articulavirales; Orthomyxoviridae; Alphainfluenzavirus. XX RN [1] RP 1-2208 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT "Influenza Sequencing Activity group"; RL Unpublished. XX RN [2] RP 1-2208 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT ; RL Submitted (09-MAR-2020) to the INSDC. RL WHO Collaborating Center for Surveillance, Epidemiology and Control of RL Influenza, Influenza Division, Centers for Disease Control and Prevention, RL 1600 Clifton Road, N.E., Atlanta, GA 30333, USA XX DR MD5; 6576be10db0c8c24655ece9fe7c1df7d. XX CC ##FluData-START## CC EPI_ISOLATE_ID :: EPI_ISL_409225 CC NAME :: A/Maryland/03/2020 CC TYPE :: H1N1 CC Segment_name :: PA CC HOST_AGE :: 82 CC HOST_GENDER :: M CC PASSAGE :: Original CC LOCATION :: United States / Maryland CC COLLECT_DATE :: 03-Jan-2020 CC Lineage :: A(H1N1)pdm09 CC SPECIMEN_ID :: A20000839 ORIGINAL CC SENDER_LAB :: Maryland Department of Health and Mental CC Hygiene CC SEQLAB_SAMPLE_ID :: 3026054658 CC EPI_SEQUENCE_ID :: EPI1684641 CC ##FluData-END## XX FH Key Location/Qualifiers FH FT source 1..2208 FT /organism="Influenza A virus" FT /segment="3" FT /host="Homo sapiens" FT /strain="A/Maryland/03/2020" FT /serotype="H1N1" FT /mol_type="viral cRNA" FT /country="USA:Maryland" FT /collection_date="03-Jan-2020" FT /db_xref="taxon:11320" FT gene 13..2163 FT /gene="PA" FT CDS 13..2163 FT /codon_start=1 FT /gene="PA" FT /product="polymerase PA" FT /protein_id="QIJ23532.1" FT /translation="MEDFVRQCFNPMIVELAEKAMKEYGEDPKIETNKFAAICTHLEVC FT FMYSDFHFIDERGESMILESGDPNALLKHRFEIIEGRDRIMAWTVVNSICNTTGIEKPK FT FLPDLYDYKENRFIEIGVTRREVHIYYLEKANKIKSEKTHIHIFSFTGEEMATKADYTL FT DEESRARIKTRLFTIRQEMASRSLWDSFRQSERGEETIEEKFEITGTMRKLADQSLPPN FT FSCLENFRAYVDGFEPNGCIEGKLSQMSKEVNAKIEPFLRTTPRPLRLPDGPLCHQRSK FT FLLMDALKLSIEDPSHEGEGIPLYDAIKCMKTFFGWKEPKIVKPHEKGVNPNYLMAWKQ FT VLAELQDIENEEKIPRTKNMKKTSQLKWALGENMAPEKVDFDDCKDVGDLKQYDSDEPE FT PRSLASWVQNEFNKACELTDSSWIELDEIGEDVAPIEHIASMRRNYFTAEVSHCRATEY FT IMKGVYINTALLNASCAAMDDFQLIPMISKCRTKEGRRKTNLYGFIVKGRSHLRNDTDV FT VNFVSMEFSLTDPRLEPHKWEKYCVLEIGDMLLRTAIGQVSRPMFLYVRTNGTSKIKMK FT WGMEMRRCLLQSLQQIESMIEAESSVKEKDMTKEFFENKSETWPIGESPRGVEEGSIGK FT VCRTLLAKSVFNSLYASPQLEGFSAESRKLLLIVQALRDNLEPGTFDLGGLYEAIEECL FT INDPWVLLNASWFNSFLTHALK" FT gene 13..712 FT /gene="PA-X" FT CDS join(13..582,584..712) FT /codon_start=1 FT /ribosomal_slippage FT /gene="PA-X" FT /product="PA-X protein" FT /protein_id="QIJ23533.1" FT /translation="MEDFVRQCFNPMIVELAEKAMKEYGEDPKIETNKFAAICTHLEVC FT FMYSDFHFIDERGESMILESGDPNALLKHRFEIIEGRDRIMAWTVVNSICNTTGIEKPK FT FLPDLYDYKENRFIEIGVTRREVHIYYLEKANKIKSEKTHIHIFSFTGEEMATKADYTL FT DEESRARIKTRLFTIRQEMASRSLWDSFVSPKEAKKQLKKSLKLQELCASLPTKVSHQT FT SPALKTSEPM" XX SQ Sequence 2208 BP; 740 A; 424 C; 518 G; 526 T; 0 other; tactgatcca aaatggaaga ctttgtgcga caatgcttca atccaatgat cgtcgagctt 60 gcggaaaagg caatgaaaga atatggggaa gaccccaaaa ttgaaactaa taagtttgct 120 gcaatttgca cacatttgga agtttgtttc atgtattcgg atttccattt cattgatgaa 180 cggggtgaat caatgatttt agaatctggt gacccaaatg cactattgaa gcaccgattt 240 gagataattg aaggaagaga ccgaatcatg gcctggacag tggtgaacag tatatgtaac 300 acaacaggga tagagaagcc taaatttctt cctgatttgt atgattacaa agagaaccgg 360 ttcattgaaa ttggagtaac acggagagaa gtccacatat attacctaga gaaagccaac 420 aaaataaaat ctgagaagac acacattcac atcttttcat tcactggaga ggagatggcc 480 accaaagcgg actacaccct tgacgaagaa agcagagcaa gaatcaaaac taggcttttc 540 actataagac aagaaatggc cagtaggagt ctatgggatt cctttcgtca gtccgaaaga 600 ggcgaagaaa caattgaaga aaagtttgaa attacaggaa ctatgcgcaa gcttgccgac 660 caaagtctcc caccaaactt ctcctgcctt gaaaacttca gagcctatgt agatggattc 720 gagccgaacg gctgcattga gggcaagctt tcccaaatgt caaaagaagt gaacgccaaa 780 attgaaccat tcttgaggac gacaccacgc cccctcagat tacctgatgg acctctttgc 840 catcagcggt caaagttcct gctgatggat gctctgaaat taagcattga agacccgagt 900 cacgaggggg aaggaatacc actatatgat gcaatcaaat gcatgaagac attctttggc 960 tggaaagagc ctaaaatagt caaaccacat gagaaaggcg taaatcccaa ttacctcatg 1020 gcttggaagc aggtgctagc agagctacag gacattgaaa atgaagagaa aatcccaagg 1080 acaaagaaca tgaagaaaac aagccaattg aagtgggcac tcggtgaaaa tatggcacct 1140 gaaaaagtgg actttgatga ctgtaaagat gttggagacc ttaaacagta tgacagtgat 1200 gagccagagc ccagatctct agcaagctgg gtccaaaatg aattcaataa ggcatgtgaa 1260 ttgactgatt caagctggat agaacttgat gaaataggag aagatgttgc cccgattgaa 1320 catatagcaa gcatgaggag gaactatttc acagcagaag tgtcccactg cagggctact 1380 gaatacataa tgaagggagt gtacataaat acggccttgc ttaatgcatc ctgtgcagcc 1440 atggatgact ttcagctgat tccaatgata agcaaatgta ggaccaaaga aggaagacgg 1500 aaaacaaacc tgtatgggtt cattgtaaaa ggaaggtctc atttgagaaa tgatactgat 1560 gtagtgaact ttgtaagtat ggagttctca ctcactgatc caagactgga accacacaaa 1620 tgggaaaaat actgtgttct tgaaatagga gacatgctat tgaggactgc gataggtcaa 1680 gtgtcgaggc ccatgttcct atatgtgaga accaatggaa cctccaagat caagatgaaa 1740 tggggcatgg aaatgaggcg ctgccttctt caatctcttc aacagattga gagcatgatt 1800 gaagccgagt cttctgtcaa agagaaagac atgaccaagg aattctttga aaacaaatcg 1860 gaaacatggc caatcggaga gtcacccagg ggagtggagg aaggctctat tggaaaagtg 1920 tgcagaacct tactggcaaa atctgtgttc aacagtctat atgcttctcc acaacttgag 1980 gggttttcgg ctgaatcaag aaaattgctt ctcattgttc aggcacttag ggacaacctg 2040 gaacctggaa cctttgatct tggggggcta tatgaagcaa tcgaggagtg cttgattaat 2100 gatccctggg ttttgcttaa tgcatcttgg ttcaactcct tcctcacaca tgcactgaag 2160 tagttgtggc aatgctacta tttgctatcc atattgtcca aaaaagta 2208 // ID MT167087; SV 1; linear; viral cRNA; STD; VRL; 1752 BP. XX AC MT167087; XX PR Project:PRJNA37813; XX DT 17-MAR-2020 (Rel. 144, Created) DT 17-MAR-2020 (Rel. 144, Last updated, Version 1) XX DE Influenza A virus (A/Maryland/03/2020(H1N1)) segment 4 hemagglutinin (HA) DE gene, complete cds. XX KW . XX OS Influenza A virus OC Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Insthoviricetes; OC Articulavirales; Orthomyxoviridae; Alphainfluenzavirus. XX RN [1] RP 1-1752 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT "Influenza Sequencing Activity group"; RL Unpublished. XX RN [2] RP 1-1752 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT ; RL Submitted (09-MAR-2020) to the INSDC. RL WHO Collaborating Center for Surveillance, Epidemiology and Control of RL Influenza, Influenza Division, Centers for Disease Control and Prevention, RL 1600 Clifton Road, N.E., Atlanta, GA 30333, USA XX DR MD5; 83a5aa2c41530884d03ab6ae092be371. XX CC ##FluData-START## CC EPI_ISOLATE_ID :: EPI_ISL_409225 CC NAME :: A/Maryland/03/2020 CC TYPE :: H1N1 CC Segment_name :: HA CC HOST_AGE :: 82 CC HOST_GENDER :: M CC PASSAGE :: Original CC LOCATION :: United States / Maryland CC COLLECT_DATE :: 03-Jan-2020 CC Lineage :: A(H1N1)pdm09 CC SPECIMEN_ID :: A20000839 ORIGINAL CC SENDER_LAB :: Maryland Department of Health and Mental CC Hygiene CC SEQLAB_SAMPLE_ID :: 3026054658 CC EPI_SEQUENCE_ID :: EPI1684644 CC ##FluData-END## XX FH Key Location/Qualifiers FH FT source 1..1752 FT /organism="Influenza A virus" FT /segment="4" FT /host="Homo sapiens" FT /strain="A/Maryland/03/2020" FT /serotype="H1N1" FT /mol_type="viral cRNA" FT /country="USA:Maryland" FT /collection_date="03-Jan-2020" FT /db_xref="taxon:11320" FT gene 21..1721 FT /gene="HA" FT CDS 21..1721 FT /codon_start=1 FT /gene="HA" FT /product="hemagglutinin" FT /function="receptor binding and fusion protein" FT /protein_id="QIJ23534.1" FT /translation="MKAILVVMLYTFTTANADTLCIGYHANNSTDTVDTVLEKNVTVTH FT SVNLLEDKHNGKLCKLRGVAPLHLGKCNIAGWILGNPECESLSTARSWSYIVETSNSDN FT GTCYPGDFINYEELREQLSSVSSFERFEIFPKTSSWPNHDSDNGVTAACPHAGAKSFYK FT NLIWLVKKGKSYPKINQTYINDKGKEVLVLWGIHHPPTIADQQSLYQNADAYVFVGTSR FT YSKKFKPEIATRPKVRDQEGRMNYYWTLVEPGDKITFEATGNLVAPRYAFTMERDAGSG FT IIISDTPVHDCNTTCQTPEGAINTSLPFQNVHPITIGKCPKYVKSTKLRLATGLRNVPS FT IQSRGLFGAIAGFIEGGWTGMVDGWYGYHHQNEQGSGYAADLKSTQNAIDKITNKVNSV FT IEKMNTQFTAVGKEFNHLEKRIENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSN FT VKNLYEKVRNQLKNNAKEIGNGCFEFYHKCDNTCMESVKNGTYDYPKYSEEAKLNREKI FT DGVKLDSTRIYQILAIYSTVASSLVLVVSLGAISFWMCSNGSLQCRICI" FT sig_peptide 21..71 FT /gene="HA" FT mat_peptide 72..1052 FT /gene="HA" FT /product="HA1" FT mat_peptide 1053..1718 FT /gene="HA" FT /product="HA2" XX SQ Sequence 1752 BP; 628 A; 329 C; 385 G; 410 T; 0 other; ggaaaacaaa agcaacaaaa atgaaggcaa tactagtagt tatgctgtat acatttacaa 60 ccgcaaatgc agacacatta tgtataggtt atcatgcgaa caattcaaca gacactgtgg 120 acacagtact agaaaagaat gtaacagtaa cacactctgt caatcttctg gaagacaagc 180 ataacggaaa actatgcaaa ctaagagggg tagccccatt gcatttgggt aaatgtaaca 240 ttgctggctg gatcctggga aatccagagt gtgaatcact ctccacagca agatcatggt 300 cctacattgt ggaaacatct aattcagaca atggaacgtg ttacccagga gatttcatca 360 attatgagga gctaagagag caattgagct cagtgtcatc atttgaaagg tttgaaatat 420 tccccaagac aagttcatgg cctaatcatg actcggacaa tggtgtaacg gcagcatgtc 480 ctcacgctgg agcaaaaagc ttctacaaaa acttgatatg gctggttaaa aaaggaaaat 540 catacccaaa gatcaaccaa acctacatta atgataaagg gaaagaagtc ctcgtgctgt 600 ggggcattca ccatccacct actattgctg accaacaaag tctctatcag aatgcagatg 660 catatgtttt tgtggggaca tcaagataca gcaagaagtt caagccggaa atagcaacaa 720 gacccaaagt gagggatcaa gaagggagaa tgaactatta ctggacacta gtagaaccgg 780 gagacaaaat aacattcgaa gcaactggta atctagtggc accgagatat gcattcacaa 840 tggaaagaga tgctggatct ggtattatca tttcagatac accagtccac gattgcaata 900 caacttgtca gacacccgag ggtgctataa acaccagcct cccatttcag aatgtacatc 960 cgatcacaat tgggaaatgt ccaaagtatg taaaaagcac aaaattgaga ctggccacag 1020 gattgaggaa tgtcccgtct attcaatcta gaggcctatt cggggccatt gctggcttca 1080 tcgaaggggg gtggacaggg atggtagatg gatggtacgg ttatcaccat caaaatgagc 1140 aggggtcagg atatgcagcc gatctgaaga gcacacaaaa tgccattgat aagattacta 1200 acaaagtaaa ttctgttatt gaaaagatga atacacagtt cacagcagtt ggtaaagagt 1260 tcaaccacct tgaaaaaaga atagagaatc taaataaaaa ggttgatgat ggtttcctgg 1320 acatttggac ttacaatgcc gaactgttgg ttctactgga aaacgaaaga actttggact 1380 atcacgattc aaatgtgaag aacttgtatg aaaaagtaag aaaccagtta aaaaacaatg 1440 ccaaggaaat tggaaacggc tgctttgaat tttaccacaa atgcgacaac acatgcatgg 1500 aaagtgtcaa gaatgggact tatgactacc caaaatactc agaggaagca aaattaaaca 1560 gagaaaaaat agatggagta aagctggact caacaaggat ctaccagatt ttggcgatct 1620 attcaactgt tgccagttca ttggtactgg tagtctccct gggggcaatc agcttctgga 1680 tgtgctctaa tgggtctcta cagtgtagaa tatgtattta acattaggat ttcagaatca 1740 tgagaaaaac ac 1752 // ID MT167088; SV 1; linear; viral cRNA; STD; VRL; 1540 BP. XX AC MT167088; XX PR Project:PRJNA37813; XX DT 17-MAR-2020 (Rel. 144, Created) DT 17-MAR-2020 (Rel. 144, Last updated, Version 1) XX DE Influenza A virus (A/Maryland/03/2020(H1N1)) segment 5 nucleocapsid protein DE (NP) gene, complete cds. XX KW . XX OS Influenza A virus OC Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Insthoviricetes; OC Articulavirales; Orthomyxoviridae; Alphainfluenzavirus. XX RN [1] RP 1-1540 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT "Influenza Sequencing Activity group"; RL Unpublished. XX RN [2] RP 1-1540 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT ; RL Submitted (09-MAR-2020) to the INSDC. RL WHO Collaborating Center for Surveillance, Epidemiology and Control of RL Influenza, Influenza Division, Centers for Disease Control and Prevention, RL 1600 Clifton Road, N.E., Atlanta, GA 30333, USA XX DR MD5; 17b7bef485c0169deb0e708a5016a834. XX CC ##FluData-START## CC EPI_ISOLATE_ID :: EPI_ISL_409225 CC NAME :: A/Maryland/03/2020 CC TYPE :: H1N1 CC Segment_name :: NP CC HOST_AGE :: 82 CC HOST_GENDER :: M CC PASSAGE :: Original CC LOCATION :: United States / Maryland CC COLLECT_DATE :: 03-Jan-2020 CC Lineage :: A(H1N1)pdm09 CC SPECIMEN_ID :: A20000839 ORIGINAL CC SENDER_LAB :: Maryland Department of Health and Mental CC Hygiene CC SEQLAB_SAMPLE_ID :: 3026054658 CC EPI_SEQUENCE_ID :: EPI1684638 CC ##FluData-END## XX FH Key Location/Qualifiers FH FT source 1..1540 FT /organism="Influenza A virus" FT /segment="5" FT /host="Homo sapiens" FT /strain="A/Maryland/03/2020" FT /serotype="H1N1" FT /mol_type="viral cRNA" FT /country="USA:Maryland" FT /collection_date="03-Jan-2020" FT /db_xref="taxon:11320" FT gene 34..1530 FT /gene="NP" FT CDS 34..1530 FT /codon_start=1 FT /gene="NP" FT /product="nucleocapsid protein" FT /protein_id="QIJ23535.1" FT /translation="MASQGTKRSYEQMETGGERQDTTEIRASVGRMIGGIGRFYIQMCT FT ELKLSDYDGRLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRIDGKW FT TRELILYDKEEIRRVWRQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRM FT CSLMQGSTLPRRSGAAGAAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTRVAYERM FT CNILKGKFQTAAQRAMMDQVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVY FT GLAVASGHDFEREGYSLVGIDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFED FT LRVSSFIRGKKVIPRGKLSTRGVQIASNENVETMDSNTLELRSRYWAIRTRSGGNTNQQ FT KASAGQISVQPTFSVQRNLPFERATIMAAFSGNNEGRTSDMRTEVIRMMESAKPEDLSF FT QGRGVFELSDEKATNPIVPSFDMSNEGSYFFGDNAEEYDN" XX SQ Sequence 1540 BP; 523 A; 298 C; 395 G; 324 T; 0 other; gtagataatc actcaatgag tgacatcgaa gccatggcgt ctcaaggcac caaacgatca 60 tatgaacaaa tggagactgg tggggagcgc caggatacca cagaaatcag agcatctgtt 120 ggaagaatga ttggtggaat cgggagattc tacatccaaa tgtgcactga actaaaactc 180 agtgattatg atggacgact aatccagaac agcataacaa tagagaggat ggtgctttct 240 gcttttgatg agagaagaaa taaataccta gaagagcatc caagtgctgg gaaggacccc 300 aagaaaacag gaggacccat ctatagaaga atagacggaa aatggacaag agaactcatc 360 ctttatgaca aagaagaaat aaggagagtt tggcgccaag caaacaatgg cgaagatgca 420 acagcaggtc ttactcatat catgatttgg cattccaatc tgaatgatgc cacatatcag 480 aggacaagag cacttgttcg cactggaatg gatcccagaa tgtgctctct aatgcaaggt 540 tcaacacttc ccaggaggtc tggtgccgca ggtgctgcag taaaaggagt tggaacaata 600 gctatggagt taatcagaat gataaaacgt ggaatcaatg accgaaattt ctggaggggt 660 gaaaatggac gaaggacaag agttgcttat gaaagaatgt gcaatatcct caaaggaaaa 720 tttcaaacag ctgcccagag ggcaatgatg gatcaagtaa gggaaagtcg aaacccagga 780 aacgctgaga ttgaagacct cattttcctg gcacggtcag cactcattct gagaggatca 840 gttgcacata aatcctgcct gcctgcttgt gtgtatgggc ttgcagtagc aagtggccat 900 gactttgaaa gggaagggta ctcattggtc gggatagacc cattcaaatt actccaaaac 960 agtcaagtgg tcagcctgat gagaccaaat gaaaatccag ctcacaagag tcaattggta 1020 tggatggcat gccactctgc tgcatttgaa gatttaagag tatcaagttt cataagagga 1080 aagaaagtga tcccaagagg aaagctttcc acaagagggg ttcagattgc ttcaaatgag 1140 aatgtggaaa ccatggactc caataccctg gaactaagaa gcagatactg ggccataaga 1200 accaggagtg gaggaaatac caatcaacag aaggcatctg caggccagat cagtgtgcag 1260 cctacattct cagtgcagcg aaatctcccc tttgaaagag caaccattat ggcagcattc 1320 agcgggaaca atgaaggacg gacatccgac atgcgaacag aagttataag aatgatggaa 1380 agtgcaaagc cagaggattt gtccttccag gggcggggag tcttcgagct ctcggacgaa 1440 aaggcaacga acccgatcgt gccttccttt gacatgagta atgaagggtc ttatttcttc 1500 ggagacaatg cagaggagta tgacaattga agaaaaatac 1540 // ID MT167089; SV 1; linear; viral cRNA; STD; VRL; 1433 BP. XX AC MT167089; XX PR Project:PRJNA37813; XX DT 17-MAR-2020 (Rel. 144, Created) DT 17-MAR-2020 (Rel. 144, Last updated, Version 1) XX DE Influenza A virus (A/Maryland/03/2020(H1N1)) segment 6 neuraminidase (NA) DE gene, complete cds. XX KW . XX OS Influenza A virus OC Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Insthoviricetes; OC Articulavirales; Orthomyxoviridae; Alphainfluenzavirus. XX RN [1] RP 1-1433 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT "Influenza Sequencing Activity group"; RL Unpublished. XX RN [2] RP 1-1433 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT ; RL Submitted (09-MAR-2020) to the INSDC. RL WHO Collaborating Center for Surveillance, Epidemiology and Control of RL Influenza, Influenza Division, Centers for Disease Control and Prevention, RL 1600 Clifton Road, N.E., Atlanta, GA 30333, USA XX DR MD5; ab7173018b9027176f7e69bba0337a56. XX CC ##FluData-START## CC EPI_ISOLATE_ID :: EPI_ISL_409225 CC NAME :: A/Maryland/03/2020 CC TYPE :: H1N1 CC Segment_name :: NA CC HOST_AGE :: 82 CC HOST_GENDER :: M CC PASSAGE :: Original CC LOCATION :: United States / Maryland CC COLLECT_DATE :: 03-Jan-2020 CC Lineage :: A(H1N1)pdm09 CC SPECIMEN_ID :: A20000839 ORIGINAL CC SENDER_LAB :: Maryland Department of Health and Mental CC Hygiene CC SEQLAB_SAMPLE_ID :: 3026054658 CC EPI_SEQUENCE_ID :: EPI1684643 CC ##FluData-END## XX FH Key Location/Qualifiers FH FT source 1..1433 FT /organism="Influenza A virus" FT /segment="6" FT /host="Homo sapiens" FT /strain="A/Maryland/03/2020" FT /serotype="H1N1" FT /mol_type="viral cRNA" FT /country="USA:Maryland" FT /collection_date="03-Jan-2020" FT /db_xref="taxon:11320" FT gene 9..1418 FT /gene="NA" FT CDS 9..1418 FT /codon_start=1 FT /gene="NA" FT /product="neuraminidase" FT /protein_id="QIJ23536.1" FT /translation="MNPNQKIITIGSICMTIGTANLILQIGNIISIWVSHSIQIGNQSQ FT IETCNKSVITYENNTWVNQTFVNISNTNSAARQSVASVKLAGNSSLCPVSGWAIYSKDN FT SVRIGSKGDVFVIREPFISCSPLECRTFFLTQGALLNDKHSNGTIKDRSPYRTLMSCPI FT GEVPSPYNSRFESVAWSASACHDGTNWLTIGISGPDSGAVAVLKYNGIITDTIKSWRNK FT ILRTQESECACVNGSCFTIMTDGPSDGQASYKIFRIEKGKIIKSVEMKAPNYHYEECSC FT YPDSSEITCVCRDNWHGSNRPWVSFNQNLEYQMGYICSGVFGDNPRPNDKTGSCGPVSS FT NGANGVKGFSFKYGNGVWIGRTKSISSRKGFEMIWDPNGWTGTDNKFSKKQDIVGINEW FT SGYSGSFVQHPELTGLNCIRPCFWVELIRGRPEENTIWTSGSSISFCGVDSDIVGWSWP FT DGAELPFTIDK" XX SQ Sequence 1433 BP; 464 A; 261 C; 333 G; 375 T; 0 other; agtttaaaat gaatccaaac caaaagataa taaccattgg ttctatctgt atgacaattg 60 gaacggctaa cttaatatta caaattggaa acataatctc aatatgggtt agccactcaa 120 ttcaaattgg aaatcaaagc cagattgaaa catgcaataa aagcgtcatt acttatgaaa 180 acaacacttg ggtaaatcag acatttgtta acatcagcaa cactaactct gctgctagac 240 agtcagtggc ttccgtgaaa ttagcgggca attcctctct ctgccctgtt agtggatggg 300 ctatatacag taaagacaac agtgtaagaa tcggttccaa gggggatgtg tttgtcataa 360 gggaaccatt catatcatgc tctcccttgg aatgcagaac cttcttcttg actcaagggg 420 ctttgctaaa tgacaaacat tccaatggaa ccattaaaga cagaagccca tatcgaaccc 480 taatgagctg tcctattggt gaagttccct ctccatacaa ctcaagattt gagtcagtcg 540 cttggtcagc aagtgcttgt catgatggca ccaattggct aacaattgga atttctggcc 600 cagacagtgg ggcagtggct gtgttaaaat acaatggcat aataacagac actatcaaga 660 gttggaggaa caagatattg agaacacaag agtctgaatg tgcatgtgta aatggttctt 720 gctttaccat aatgaccgat ggaccaagtg atggacaggc ctcatacaaa atcttcagaa 780 tagaaaaggg aaagataatc aaatcagtcg aaatgaaagc ccctaattat cactatgaag 840 aatgctcctg ttaccctgat tctagtgaaa tcacatgtgt gtgcagggat aactggcatg 900 gctcgaatcg accgtgggtg tctttcaacc agaatctgga atatcagatg ggatacatat 960 gcagtggggt tttcggagac aatccacgcc ctaatgataa gacaggcagt tgtggtccag 1020 tatcgtctaa tggagcaaat ggggtaaaag gattttcatt caaatacggc aatggtgttt 1080 ggatagggag aactaagagc attagttcaa gaaaaggttt tgagatgatt tgggatccga 1140 atggatggac tgggactgac aataaattct caaaaaagca agatatcgta ggaataaatg 1200 agtggtcagg gtatagcggg agttttgttc agcatccaga actaacaggg ctgaattgta 1260 taagaccttg cttctgggtt gaactaataa gaggacgacc cgaagagaac acaatctgga 1320 ctagcgggag cagcatatcc ttttgtggtg tagacagtga cattgtgggt tggtcttggc 1380 cagacggtgc tgagttgcca tttaccattg acaagtaatt tgttcaaaaa act 1433 // ID MT167090; SV 1; linear; viral cRNA; STD; VRL; 1002 BP. XX AC MT167090; XX PR Project:PRJNA37813; XX DT 17-MAR-2020 (Rel. 144, Created) DT 17-MAR-2020 (Rel. 144, Last updated, Version 1) XX DE Influenza A virus (A/Maryland/03/2020(H1N1)) segment 7 matrix protein 2 DE (M2) and matrix protein 1 (M1) genes, complete cds. XX KW . XX OS Influenza A virus OC Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Insthoviricetes; OC Articulavirales; Orthomyxoviridae; Alphainfluenzavirus. XX RN [1] RP 1-1002 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT "Influenza Sequencing Activity group"; RL Unpublished. XX RN [2] RP 1-1002 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT ; RL Submitted (09-MAR-2020) to the INSDC. RL WHO Collaborating Center for Surveillance, Epidemiology and Control of RL Influenza, Influenza Division, Centers for Disease Control and Prevention, RL 1600 Clifton Road, N.E., Atlanta, GA 30333, USA XX DR MD5; 08d045d7fe1aaa46d066f0654be09251. XX CC ##FluData-START## CC EPI_ISOLATE_ID :: EPI_ISL_409225 CC NAME :: A/Maryland/03/2020 CC TYPE :: H1N1 CC Segment_name :: M CC HOST_AGE :: 82 CC HOST_GENDER :: M CC PASSAGE :: Original CC LOCATION :: United States / Maryland CC COLLECT_DATE :: 03-Jan-2020 CC Lineage :: A(H1N1)pdm09 CC SPECIMEN_ID :: A20000839 ORIGINAL CC SENDER_LAB :: Maryland Department of Health and Mental CC Hygiene CC SEQLAB_SAMPLE_ID :: 3026054658 CC EPI_SEQUENCE_ID :: EPI1684640 CC ##FluData-END## XX FH Key Location/Qualifiers FH FT source 1..1002 FT /organism="Influenza A virus" FT /segment="7" FT /host="Homo sapiens" FT /strain="A/Maryland/03/2020" FT /serotype="H1N1" FT /mol_type="viral cRNA" FT /country="USA:Maryland" FT /collection_date="03-Jan-2020" FT /db_xref="taxon:11320" FT gene 14..995 FT /gene="M2" FT CDS join(14..39,728..995) FT /codon_start=1 FT /gene="M2" FT /product="matrix protein 2" FT /protein_id="QIJ23538.1" FT /translation="MSLLTEVETPTRSEWECRCSGSNDPLVIAANIIGILHLILWITDR FT LFFKCIYRRFKYGLKRGPSTEGVPESMREEYQQEQQSAVDVDDGHFVNIELE" FT gene 14..772 FT /gene="M1" FT CDS 14..772 FT /codon_start=1 FT /gene="M1" FT /product="matrix protein 1" FT /protein_id="QIJ23537.1" FT /translation="MSLLTEVETYVLSIIPSGPLKAEIAQRLESVFAGKNTDLEALMEW FT LKTRPILSPLTKGILGFVFTLTVPSERGLQRRRFIQNALNGNGDPNNMDRAVKLYKKLK FT REITFHGAKEVSLSYSTGALASCMGLIYNRMGTVTTEAAFGLVCATCEQIADSQHRSHR FT QMATTTNPLIRHENRMVLASTTAKAMEQVAGSSEQAAEAMEVANKTRQMVHAMRTIGTH FT PSSSAGLRDDLLENLQAYQKRMGVQMQRFK" XX SQ Sequence 1002 BP; 304 A; 209 C; 250 G; 239 T; 0 other; tagatgttta aagatgagtc ttctaaccga ggtcgaaacg tacgttcttt ctatcatccc 60 gtcaggcccc ctcaaagccg agatcgcaca aagactggaa agtgtctttg cagggaagaa 120 cacagatctt gaggctctca tggaatggct aaagacaaga ccaatcttgt cacctctgac 180 taagggaatt ttaggatttg tgttcacgct caccgtgccc agtgagcgag gactgcagcg 240 tagacgcttt atccaaaatg ccctaaatgg aaatggggac ccgaacaaca tggatagagc 300 agttaaacta tacaagaaac tcaaaagaga aataacgttc catggggcca aagaagtgtc 360 actaagctat tcaactggtg cacttgcaag ttgcatgggc ctcatataca acaggatggg 420 aacagtgacc acagaagctg ctttcggtct agtttgtgcc acttgtgaac agattgctga 480 ttcacagcat cggtctcaca gacaaatggc tactaccaca aatccactaa tcaggcatga 540 aaacagaatg gtgctggcta gcactacggc aaaggctatg gaacaggtgg ctggatcgag 600 tgaacaggca gcggaggcca tggaggttgc taataagact aggcagatgg tacatgcaat 660 gagaactatt ggaactcatc ctagctccag tgctggtcta agagatgacc ttcttgaaaa 720 tttacaggcc taccagaagc gaatgggagt gcagatgcag cggttcaaat gatcctctcg 780 tcattgcagc aaacatcatt gggatcttgc acctgatatt gtggattact gatcgtcttt 840 ttttcaaatg catttatcgt cgctttaaat acggtttgaa aagagggcct tctacggaag 900 gagtgcctga gtccatgagg gaagaatatc aacaggagca gcagagtgct gtggatgttg 960 acgatggtca ttttgtcaac atagagctag agtaaaaaac ta 1002 // ID MT167091; SV 1; linear; viral cRNA; STD; VRL; 865 BP. XX AC MT167091; XX PR Project:PRJNA37813; XX DT 17-MAR-2020 (Rel. 144, Created) DT 17-MAR-2020 (Rel. 144, Last updated, Version 1) XX DE Influenza A virus (A/Maryland/03/2020(H1N1)) segment 8 nuclear export DE protein (NEP) and nonstructural protein 1 (NS1) genes, complete cds. XX KW . XX OS Influenza A virus OC Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Insthoviricetes; OC Articulavirales; Orthomyxoviridae; Alphainfluenzavirus. XX RN [1] RP 1-865 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT "Influenza Sequencing Activity group"; RL Unpublished. XX RN [2] RP 1-865 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT ; RL Submitted (09-MAR-2020) to the INSDC. RL WHO Collaborating Center for Surveillance, Epidemiology and Control of RL Influenza, Influenza Division, Centers for Disease Control and Prevention, RL 1600 Clifton Road, N.E., Atlanta, GA 30333, USA XX DR MD5; b9a7a155be0e528349eb81bfd69cd71a. XX CC ##FluData-START## CC EPI_ISOLATE_ID :: EPI_ISL_409225 CC NAME :: A/Maryland/03/2020 CC TYPE :: H1N1 CC Segment_name :: NS CC HOST_AGE :: 82 CC HOST_GENDER :: M CC PASSAGE :: Original CC LOCATION :: United States / Maryland CC COLLECT_DATE :: 03-Jan-2020 CC Lineage :: A(H1N1)pdm09 CC SPECIMEN_ID :: A20000839 ORIGINAL CC SENDER_LAB :: Maryland Department of Health and Mental CC Hygiene CC SEQLAB_SAMPLE_ID :: 3026054658 CC EPI_SEQUENCE_ID :: EPI1684639 CC ##FluData-END## XX FH Key Location/Qualifiers FH FT source 1..865 FT /organism="Influenza A virus" FT /segment="8" FT /host="Homo sapiens" FT /strain="A/Maryland/03/2020" FT /serotype="H1N1" FT /mol_type="viral cRNA" FT /country="USA:Maryland" FT /collection_date="03-Jan-2020" FT /db_xref="taxon:11320" FT gene 15..852 FT /gene="NEP" FT /gene_synonym="NS2" FT CDS join(15..44,517..852) FT /codon_start=1 FT /gene="NEP" FT /gene_synonym="NS2" FT /product="nuclear export protein" FT /note="nonstructural protein 2" FT /protein_id="QIJ23540.1" FT /translation="MESNTMSSFQDILMRMSKMQLGSSSEDLSGMVTRFESLKIYRDSL FT GEAVMRMGDLHYLQSRNEKWREQLGQKFEEIRWLIEEIRHRLKATENSFEQITFMQALQ FT LLLEVEQEIRAFSFQLI" FT gene 15..674 FT /gene="NS1" FT CDS 15..674 FT /codon_start=1 FT /gene="NS1" FT /product="nonstructural protein 1" FT /protein_id="QIJ23539.1" FT /translation="MESNTMSSFQVDCFLWHIRKRFADNGLGDAPFLDRLRRDQKSLKG FT RGNTLGLDIKTATLVGKQIVEWILKEESSETLRMAIASVPTSRYISDMTLEEMSRDWFM FT LMPRQKIIGTLCVRLDQAVMDKNIVLEANFSVIFNRLETLILLRAFTEEGTIVGEISPL FT PSLPGHTYEDVKNAVGVLIGGLEWNGNTVRVSENIQRFAWRSCDENGRPSLPPEQK" XX SQ Sequence 865 BP; 283 A; 165 C; 203 G; 214 T; 0 other; gtgacaaaaa cataatggaa tccaacacca tgtcaagctt tcaggtagac tgttttcttt 60 ggcatattcg caagcgattt gcagacaatg gattgggtga tgccccattc ctcgatcggc 120 tacgccgaga tcaaaagtcc ttaaaaggaa gaggcaacac ccttggcctc gacatcaaaa 180 cagccactct tgttgggaaa caaattgtgg aatggatttt gaaagaggaa tccagcgaga 240 cacttagaat ggcaattgca tctgtaccta cttcgcgtta catttctgac atgaccctcg 300 aggaaatgtc acgagactgg ttcatgctta tgcctaggca aaagataata ggcactcttt 360 gcgtgcgatt ggaccaggcg gtcatggata agaacatagt actggaagca aacttcagtg 420 taatcttcaa ccgattagag accttgatac tactaagggc tttcactgag gagggaacaa 480 tagttggaga aatttcacca ttaccttctc ttccaggaca tacttatgag gatgtcaaaa 540 atgcagttgg ggtcctcatc ggaggacttg agtggaatgg taacacggtt cgagtctctg 600 aaaatataca gagattcgct tggagaagct gtgatgagaa tgggagacct tcactacctc 660 cagagcagaa atgagaagtg gcgggaacaa ttgggacaga aatttgagga aataagatgg 720 ttaattgaag aaatacgaca cagattgaaa gcgacagaaa atagtttcga acaaataaca 780 tttatgcaag ccttacaact actgcttgaa gtagagcaag agataagagc tttctcgttt 840 cagcttattt aatgataaaa aacac 865 // ID MT167092; SV 1; linear; viral cRNA; STD; VRL; 2316 BP. XX AC MT167092; XX PR Project:PRJNA37813; XX DT 17-MAR-2020 (Rel. 144, Created) DT 17-MAR-2020 (Rel. 144, Last updated, Version 1) XX DE Influenza A virus (A/Georgia/47/2019(H1N1)) segment 1 polymerase PB2 (PB2) DE gene, complete cds. XX KW . XX OS Influenza A virus OC Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Insthoviricetes; OC Articulavirales; Orthomyxoviridae; Alphainfluenzavirus. XX RN [1] RP 1-2316 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT "Influenza Sequencing Activity group"; RL Unpublished. XX RN [2] RP 1-2316 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT ; RL Submitted (09-MAR-2020) to the INSDC. RL WHO Collaborating Center for Surveillance, Epidemiology and Control of RL Influenza, Influenza Division, Centers for Disease Control and Prevention, RL 1600 Clifton Road, N.E., Atlanta, GA 30333, USA XX DR MD5; e956c5c8a7919bf88d80f170bbeb91ba. XX CC ##FluData-START## CC EPI_ISOLATE_ID :: EPI_ISL_409230 CC NAME :: A/Georgia/47/2019 CC TYPE :: H1N1 CC Segment_name :: PB2 CC HOST_AGE :: 2 CC PASSAGE :: Original CC LOCATION :: United States / Georgia CC COLLECT_DATE :: 28-Dec-2019 CC Lineage :: A(H1N1)pdm09 CC SPECIMEN_ID :: 20B0043872 ORIGINAL CC SENDER_LAB :: Georgia Public Health Laboratory CC SEQLAB_SAMPLE_ID :: 3026054732 CC EPI_SEQUENCE_ID :: EPI1684677 CC ##FluData-END## XX FH Key Location/Qualifiers FH FT source 1..2316 FT /organism="Influenza A virus" FT /segment="1" FT /host="Homo sapiens" FT /strain="A/Georgia/47/2019" FT /serotype="H1N1" FT /mol_type="viral cRNA" FT /country="USA:Georgia" FT /collection_date="28-Dec-2019" FT /db_xref="taxon:11320" FT gene 16..2295 FT /gene="PB2" FT CDS 16..2295 FT /codon_start=1 FT /gene="PB2" FT /product="polymerase PB2" FT /protein_id="QIJ23541.1" FT /translation="MERIKELRDLMSQSRTREILTKTTVDHMAIIKKYTSGRQEKNPAL FT RMKWMMAMKYPITADKRIMDIIPERNEQGQTLWSKINDAGSDRVMVSPLAVTWWNRNGP FT TTSTVHYPKVYKTYFEKVERLKHGTFGPVHFRNQVKIRRRVDTNPGHADLSAKEAQDVI FT MEVVFPNEVGARILTSESQLAITKEKKEELQNCKIAPLMVAYMLERELVRKTRFLPVAG FT GTSSVYIEVLHLTQGTCWEQMYTPGGEVRNDDVDQSLIIAARNIVRRAAVSADPLASLL FT EMCHSTQIGGVKMVDILKQNPTEEQAVDICKAAIGLRISSSFSFGGFTFKRTSGSSVKK FT EEEMLTGNLQTLKLRVHEGYEEFTMVGRRATAILRKATRRLIQLIVSGRDEQSIAEAII FT VAMVFSQEDCMIKAVRGDLNFVNRANQRLNPMHQLLRHFQKDAKVLFQNWGIETIDNVM FT GMIGILPDMTPSTEMSLRGIRVSKMGVDEYSSTERVVVSIDRFLRVRDQRGNVLLSPEE FT VSETQGTEKLTITYSSSMMWEINGPESVLVNTYQWIIRNWEIVKIQWSQDPTMLYNKME FT FEPFQSLVPKATRSRYSGFVRTLFQQMRDVLGTFDTVQIIKLLPFAAAPPEQSRMQFSS FT LTVNVRGSGLRILVRGNSPVFNYNKATKRLTILGKDAGALTEDPDEGTSGVESAVLRGF FT LILGKEDKRYGPALSINELSNLAKGEKANVLIGQGDIVLVMKRKRDSSILTDSQTATKR FT IRMAIN" XX SQ Sequence 2316 BP; 794 A; 433 C; 584 G; 505 T; 0 other; tcaaatatat tcaatatgga gagaataaaa gagctgagag atctaatgtc gcagtcccgc 60 actcgcgaga tactcactaa gaccactgtg gaccatatgg ccatcatcaa aaagtacaca 120 tcgggaaggc aagagaagaa ccccgcgctc agaatgaagt ggatgatggc aatgaaatac 180 ccaattacgg cagacaagag aataatggac ataatcccag agaggaatga acaaggacaa 240 accctctgga gcaaaataaa cgatgctgga tcagaccgag tgatggtatc acctctagca 300 gtaacatggt ggaataggaa tggtccaaca acaagtacag ttcattaccc taaggtatat 360 aaaacttatt tcgaaaaggt cgaaaggttg aaacatggta ccttcggccc tgtccacttc 420 agaaatcaag ttaaaataag gaggagagtt gatacaaacc ctggccatgc agatctcagt 480 gccaaggagg cacaggatgt gattatggaa gttgttttcc caaatgaagt gggggcaaga 540 atactgacat cagagtcaca gctggcaata acaaaagaga agaaagaaga gctccagaat 600 tgtaaaattg ctcccttgat ggtggcgtac atgctagaaa gagaattggt ccgtaaaaca 660 aggtttctcc cggtagccgg tgggacaagc agtgtttata ttgaggtgtt gcacttgacc 720 caagggacgt gctgggagca gatgtacact ccaggaggag aagtgagaaa tgatgatgtt 780 gaccaaagct tgattatcgc tgctagaaac atagtaagaa gagcagcagt gtcagcagac 840 ccattagcat ctctcttgga aatgtgccac agcacacaga ttggaggtgt gaagatggtg 900 gacatcctta aacagaatcc aactgaggag caagccgtag acatatgcaa ggcagcaata 960 gggttgagga tcagctcatc tttcagtttt ggtgggttca ctttcaaaag gacaagcgga 1020 tcatcagtca agaaagaaga agaaatgcta acgggcaacc tccaaacact gaaattaaga 1080 gtacatgaag ggtatgaaga attcacaatg gttgggagaa gagcaacagc tattctcaga 1140 aaggcaacca ggagattgat ccaattaata gtaagcggga gagacgagca gtcaatagct 1200 gaagcaataa ttgtggccat ggtattctca caagaggatt gcatgatcaa agcagttagg 1260 ggcgatctga actttgtcaa tagggcaaac cagagactga atcccatgca ccaactcttg 1320 aggcatttcc aaaaagatgc aaaagtgctt ttccagaact ggggaattga aaccatcgac 1380 aatgtgatgg gaatgatcgg aatactgccc gacatgaccc caagtacgga gatgtcactg 1440 agaggaataa gagtcagcaa gatgggagta gatgaatact ccagcacgga gagagtggta 1500 gtgagtattg accgattttt gagggttaga gatcaaagag gaaacgtact gttgtctccc 1560 gaagaagtta gtgaaacgca aggaactgag aagttaacaa taacttattc gtcatcaatg 1620 atgtgggaga tcaacggccc tgagtcagtg ctagtcaaca cttatcaatg gataatcaga 1680 aactgggaaa ttgtgaaaat tcaatggtca caagacccca caatgttata caacaaaatg 1740 gaatttgaac catttcagtc tcttgttcct aaggcaacca gaagccggta cagtggattc 1800 gtaaggacac tgttccagca aatgagggat gtgcttggga catttgacac tgtccaaata 1860 ataaaacttc tcccctttgc tgctgctcca ccagaacaga gcaggatgca attttcttca 1920 ttgactgtga atgtgagagg atcagggtta aggatactgg taagaggcaa ttctccagta 1980 ttcaattaca acaaggcaac caaacgactt acgattcttg gaaaggatgc aggtgcattg 2040 actgaagatc cagatgaagg cacatctggg gtggagtctg ctgtcctgag aggattcctc 2100 attttaggca aagaagacaa gagatatggc ccagcattaa gcatcaatga actgagcaat 2160 cttgcaaaag gagagaaagc taatgtgcta attgggcagg gggacatagt gttagtaatg 2220 aaacgaaaac gggactctag catacttact gacagccaga cagcgaccaa aagaattcgg 2280 atggccatca attagtgtcg aattgtttaa aaacga 2316 // ID MT167093; SV 1; linear; viral cRNA; STD; VRL; 2208 BP. XX AC MT167093; XX PR Project:PRJNA37813; XX DT 17-MAR-2020 (Rel. 144, Created) DT 17-MAR-2020 (Rel. 144, Last updated, Version 1) XX DE Influenza A virus (A/Georgia/47/2019(H1N1)) segment 3 polymerase PA (PA) DE and PA-X protein (PA-X) genes, complete cds. XX KW . XX OS Influenza A virus OC Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Insthoviricetes; OC Articulavirales; Orthomyxoviridae; Alphainfluenzavirus. XX RN [1] RP 1-2208 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT "Influenza Sequencing Activity group"; RL Unpublished. XX RN [2] RP 1-2208 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT ; RL Submitted (09-MAR-2020) to the INSDC. RL WHO Collaborating Center for Surveillance, Epidemiology and Control of RL Influenza, Influenza Division, Centers for Disease Control and Prevention, RL 1600 Clifton Road, N.E., Atlanta, GA 30333, USA XX DR MD5; 491b531d37449eee502349b23bcbbced. XX CC ##FluData-START## CC EPI_ISOLATE_ID :: EPI_ISL_409230 CC NAME :: A/Georgia/47/2019 CC TYPE :: H1N1 CC Segment_name :: PA CC HOST_AGE :: 2 CC PASSAGE :: Original CC LOCATION :: United States / Georgia CC COLLECT_DATE :: 28-Dec-2019 CC Lineage :: A(H1N1)pdm09 CC SPECIMEN_ID :: 20B0043872 ORIGINAL CC SENDER_LAB :: Georgia Public Health Laboratory CC SEQLAB_SAMPLE_ID :: 3026054732 CC EPI_SEQUENCE_ID :: EPI1684676 CC ##FluData-END## XX FH Key Location/Qualifiers FH FT source 1..2208 FT /organism="Influenza A virus" FT /segment="3" FT /host="Homo sapiens" FT /strain="A/Georgia/47/2019" FT /serotype="H1N1" FT /mol_type="viral cRNA" FT /country="USA:Georgia" FT /collection_date="28-Dec-2019" FT /db_xref="taxon:11320" FT gene 13..2163 FT /gene="PA" FT CDS 13..2163 FT /codon_start=1 FT /gene="PA" FT /product="polymerase PA" FT /protein_id="QIJ23542.1" FT /translation="MEDFVRQCFNPMIVELAEKAMKEYGEDPKIETNKFAAICTHLEVC FT FMYSDFHFIDERGESIIVESGDPNALLKHRFEIIEGRDRIMAWTVVNSICNTTGIEKPK FT FLPDLYDYKENRFIEIGVTRREVHIYYLEKANKIKSEKTHIHIFSFTGEEMATKADYTL FT DEESRARIKTRLFTIRQEMASRSLWDSFRQSERGEETIEEKFEITGTMRRLADQSLPPN FT FSSLENFRAYVDGFEPNGCIEGKLSQMSKEVNAKIEPFLRTTPRPLRLPDGPLCHQRSK FT FLLMDALKLSIEDPSHEGEGIPLYDAIKCMKTFFGWKEPKIVKPHEKGVNPNYLMAWKQ FT VLAELQDIENEEKIPRTKNMKKTSQLKWALGENMAPEKVDFDDCKDVGDLKQYDSDEPE FT PRSLASWVQNEFNKACELTDSSWIELDEIGEDVAPIEHIASMRRNYFTAEVSHCRATEY FT IMKGVYINTALLNASCAAMDDFQLIPMISKCRTKEGRRKTNLYGFIIKGRSHLRNDTDV FT VNFVSMEFSLTDPRLEPHKWEKYCVLEIGDMLLRTAIGQVSRPMFLYVRTNGTSKIKMK FT WGMEMRRCLLQSLQQIESMIEAESSVKEKDMTKEFFENKSETWPIGESPRGVEEGSIGK FT VCRTLLAKSVFNSLYASPQLEGFSAESRKLLLIVQALRDNLEPGTFDLGGLYEAIEECL FT INDPWVLLNASWFNSFLTHALK" FT gene 13..712 FT /gene="PA-X" FT CDS join(13..582,584..712) FT /codon_start=1 FT /ribosomal_slippage FT /gene="PA-X" FT /product="PA-X protein" FT /protein_id="QIJ23543.1" FT /translation="MEDFVRQCFNPMIVELAEKAMKEYGEDPKIETNKFAAICTHLEVC FT FMYSDFHFIDERGESIIVESGDPNALLKHRFEIIEGRDRIMAWTVVNSICNTTGIEKPK FT FLPDLYDYKENRFIEIGVTRREVHIYYLEKANKIKSEKTHIHIFSFTGEEMATKADYTL FT DEESRARIKTRLFTIRQEMASRSLWDSFVSPKEAKKQLKKSLKLQELCAGLPTKVSHQT FT SPALKTSEPM" XX SQ Sequence 2208 BP; 743 A; 417 C; 516 G; 532 T; 0 other; tactgatcca aaatggaaga ctttgtgcga caatgcttca atccaatgat cgtcgagctt 60 gcggaaaagg caatgaaaga atatggggaa gaccccaaaa ttgaaactaa taagtttgct 120 gcaatttgca cacatttgga agtttgtttc atgtattcgg atttccattt cattgatgaa 180 cggggtgaat caataattgt agaatctggt gacccaaatg cactattgaa gcaccgattt 240 gagataattg aaggaagaga ccgaatcatg gcttggacag tggtgaacag tatatgtaac 300 acaacaggga tagagaagcc taaatttctt cctgatttgt atgattacaa agagaaccgg 360 ttcattgaaa ttggagtaac acggagagaa gttcacatat attacctaga gaaagccaac 420 aaaataaaat ctgagaagac acacattcac atcttttcat tcactggaga ggagatggcc 480 accaaagcgg actacactct tgacgaagaa agcagagcaa gaatcaaaac taggcttttc 540 actataagac aagaaatggc cagtaggagt ctatgggatt cctttcgtca gtccgaaaga 600 ggcgaagaaa caattgaaga aaagtttgaa attacaggaa ctatgcgcag gcttgccgac 660 caaagtctcc caccaaactt ctccagcctt gaaaacttca gagcctatgt agatggattc 720 gagccgaacg gctgcattga gggtaagctt tcccaaatgt caaaagaagt gaacgccaaa 780 attgaaccat tcttgaggac gacaccacgc cctctcagat tacctgatgg acctctttgc 840 catcagcggt caaagttcct gctgatggat gctctgaaat taagcattga agacccgagt 900 cacgaggggg aaggaatacc actatatgat gcaatcaaat gcatgaagac attctttggc 960 tggaaagagc ctaaaatagt caaaccacat gagaaaggcg taaatcccaa ttacctcatg 1020 gcttggaagc aggtgctagc agagctacag gacattgaaa atgaagagaa aatcccaagg 1080 acaaagaaca tgaagaaaac aagccaattg aagtgggcac tcggtgaaaa tatggcacct 1140 gaaaaagtgg actttgatga ctgtaaagat gttggagacc ttaaacagta tgacagtgat 1200 gagccagagc ccagatctct agcaagctgg gtccaaaatg aattcaataa ggcatgtgaa 1260 ttgactgatt caagctggat agaacttgat gaaataggag aagatgttgc cccaattgaa 1320 catatagcaa gcatgaggag gaactatttt acagcagaag tgtctcactg cagggctact 1380 gaatacataa tgaagggagt gtacataaat acggccttgc ttaatgcatc ctgtgcagcc 1440 atggatgact ttcagctgat tccaatgata agcaaatgta ggaccaaaga aggaagacgg 1500 aaaacaaacc tttatgggtt cattataaaa ggaaggtctc atttgagaaa tgatactgat 1560 gtggtgaact ttgtaagtat ggagttctca ctcactgatc caagactgga accacacaaa 1620 tgggaaaaat actgtgttct tgaaatagga gacatgctat tgaggactgc gataggtcaa 1680 gtgtcgaggc ccatgttcct atatgtgaga accaatggaa cctccaagat caagatgaaa 1740 tggggcatgg aaatgaggcg ctgccttctt caatctcttc aacagattga gagcatgatt 1800 gaagccgagt cttctgtcaa agagaaagac atgaccaagg aattctttga aaacaaatcg 1860 gaaacatggc caatcggaga atcacccagg ggagtggagg aaggctctat tggaaaagtg 1920 tgcagaacct tactggcaaa atctgtgttc aacagtctat atgcttctcc acaacttgag 1980 gggttttcgg ctgaatcaag aaaattgctt ctcattgttc aggcacttag ggacaacctg 2040 gaacctggaa cctttgatct tggggggcta tatgaagcaa tcgaggagtg cttgattaat 2100 gatccctggg ttttgcttaa tgcatcttgg ttcaactcct tcctcacaca tgcactgaag 2160 tagttgtggc aatgctacta tttgctatcc atattgtcca aaaaagta 2208 // ID MT167094; SV 1; linear; viral cRNA; STD; VRL; 1752 BP. XX AC MT167094; XX PR Project:PRJNA37813; XX DT 17-MAR-2020 (Rel. 144, Created) DT 17-MAR-2020 (Rel. 144, Last updated, Version 1) XX DE Influenza A virus (A/Georgia/47/2019(H1N1)) segment 4 hemagglutinin (HA) DE gene, complete cds. XX KW . XX OS Influenza A virus OC Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Insthoviricetes; OC Articulavirales; Orthomyxoviridae; Alphainfluenzavirus. XX RN [1] RP 1-1752 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT "Influenza Sequencing Activity group"; RL Unpublished. XX RN [2] RP 1-1752 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT ; RL Submitted (09-MAR-2020) to the INSDC. RL WHO Collaborating Center for Surveillance, Epidemiology and Control of RL Influenza, Influenza Division, Centers for Disease Control and Prevention, RL 1600 Clifton Road, N.E., Atlanta, GA 30333, USA XX DR MD5; 93559adba36209eaa4760ae1a4a2cc9e. XX CC ##FluData-START## CC EPI_ISOLATE_ID :: EPI_ISL_409230 CC NAME :: A/Georgia/47/2019 CC TYPE :: H1N1 CC Segment_name :: HA CC HOST_AGE :: 2 CC PASSAGE :: Original CC LOCATION :: United States / Georgia CC COLLECT_DATE :: 28-Dec-2019 CC Lineage :: A(H1N1)pdm09 CC SPECIMEN_ID :: 20B0043872 ORIGINAL CC SENDER_LAB :: Georgia Public Health Laboratory CC SEQLAB_SAMPLE_ID :: 3026054732 CC EPI_SEQUENCE_ID :: EPI1684679 CC ##FluData-END## XX FH Key Location/Qualifiers FH FT source 1..1752 FT /organism="Influenza A virus" FT /segment="4" FT /host="Homo sapiens" FT /strain="A/Georgia/47/2019" FT /serotype="H1N1" FT /mol_type="viral cRNA" FT /country="USA:Georgia" FT /collection_date="28-Dec-2019" FT /db_xref="taxon:11320" FT gene 21..1721 FT /gene="HA" FT CDS 21..1721 FT /codon_start=1 FT /gene="HA" FT /product="hemagglutinin" FT /function="receptor binding and fusion protein" FT /protein_id="QIJ23544.1" FT /translation="MKAILVVLLYTFTTANADTLCIGYHANNSTDTVDTVLEKNVTVTH FT SVNLLEDKHNGKLCKLRGVAPLHLGKCNIAGWILGNPECESLSTARSWSYIVETSNSDN FT GTCYPGDFINYEELREQLSSVSSFERFEIFPKTSSWPNHDSDKGVTAACPHAGAKSFYK FT NLIWLVKKGNSYPKLNQTYINDKGKEVLVLWGIHHPPTIAAQESLYQNADAYVFVGTSR FT YSKKFKPEIATRPKVRDQEGRMNYYWTLVEPGDKITFEATGNLVVPRYAFTMERDAGSG FT IIISDTPVHDCNTTCQTPEGAINTSLPFQNVHPITIGKCPKYVKSTKLRLATGLRNVPS FT IQSRGLFGAIAGFIEGGWTGMVDGWYGYHHQNEQGSGYAADLKSTQNAIDKITNKVNSV FT IEKMNTQFTAVGKEFNHLEKRIENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSN FT VKNLYEKVRNQLKNNAKEIGNGCFEFYHKCDNTCMESVKNGTYDYPKYSEEAKLNREKI FT DGVKLESTRIYQILAIYSTVASSLVLVVSLGAISFWMCSNGSLQCRICI" FT sig_peptide 21..71 FT /gene="HA" FT mat_peptide 72..1052 FT /gene="HA" FT /product="HA1" FT mat_peptide 1053..1718 FT /gene="HA" FT /product="HA2" XX SQ Sequence 1752 BP; 628 A; 327 C; 386 G; 411 T; 0 other; ggaaaacaaa agcaacaaaa atgaaggcaa tactagtagt tctgctgtat acatttacaa 60 ccgcaaatgc agacacatta tgtataggtt atcatgcgaa caattcaaca gacactgtag 120 acacagtact agaaaagaat gtaacagtaa cacactctgt caatcttctg gaagacaagc 180 ataacggaaa actatgcaaa ctaagagggg tagccccatt gcatttgggt aaatgtaaca 240 ttgctggctg gatcctggga aatccagagt gtgaatcact ctccacagca aggtcatggt 300 cctacattgt ggaaacatct aattcagaca atggaacgtg ttacccagga gatttcatca 360 attatgagga gctaagagag caattgagct cagtgtcatc atttgaaagg tttgaaatat 420 tccccaagac aagttcatgg cctaatcatg actcggacaa aggtgtaacg gcagcatgtc 480 ctcacgctgg agcaaaaagc ttctacaaaa acttgatatg gctggttaaa aaaggaaatt 540 catacccaaa gctcaaccaa acctacatta atgataaagg gaaagaagtc ctcgtgctgt 600 ggggcattca ccatccacct actattgctg cccaagaaag tctctatcag aatgcagatg 660 catatgtttt tgtggggaca tcaagataca gcaagaagtt caagccggaa atagcaacaa 720 gacccaaagt gagggatcaa gaagggagaa tgaactatta ctggacacta gtagaaccgg 780 gagacaaaat aacattcgaa gcaactggaa atctagtggt accgagatat gcattcacaa 840 tggaaagaga tgctggatct ggtattatca tttcagatac accagtccac gattgcaata 900 caacttgtca gacacccgag ggtgctataa acaccagcct cccatttcag aatgtacatc 960 cgattacaat tgggaaatgt ccaaagtatg taaaaagcac aaaattgaga ctggccacag 1020 gattgaggaa tgtcccgtct attcaatcta gaggcctatt cggggccatt gctggcttca 1080 ttgaaggggg gtggacaggg atggtagatg gatggtacgg ttatcaccat caaaatgagc 1140 aggggtcagg atatgcagcc gatctgaaga gcacacaaaa tgccattgat aagattacta 1200 acaaagtaaa ttctgttatt gaaaagatga atacacagtt cacagcagtg ggtaaagagt 1260 tcaaccacct tgaaaaaaga atagagaatc taaataaaaa agttgatgat ggtttcctgg 1320 acatttggac ttacaatgcc gagctgttgg ttctactgga aaacgaaaga actttggact 1380 atcacgattc aaatgtgaag aacttgtatg aaaaagtaag aaaccagtta aaaaacaatg 1440 ccaaggaaat tggaaacggc tgctttgaat tttaccacaa atgcgacaac acatgcatgg 1500 aaagtgtcaa gaatgggact tatgactacc caaaatactc agaggaagca aaattaaaca 1560 gagaaaaaat agatggagta aagctggaat caacaaggat ctaccagatt ttggcgatct 1620 attcaactgt tgccagttca ttggtactgg tagtctccct gggggcaatc agcttctgga 1680 tgtgctctaa tgggtctcta cagtgtagaa tatgtattta acattaagat ttcagaatca 1740 tgagaaaaac ac 1752 // ID MT167095; SV 1; linear; viral cRNA; STD; VRL; 1540 BP. XX AC MT167095; XX PR Project:PRJNA37813; XX DT 17-MAR-2020 (Rel. 144, Created) DT 17-MAR-2020 (Rel. 144, Last updated, Version 1) XX DE Influenza A virus (A/Georgia/47/2019(H1N1)) segment 5 nucleocapsid protein DE (NP) gene, complete cds. XX KW . XX OS Influenza A virus OC Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Insthoviricetes; OC Articulavirales; Orthomyxoviridae; Alphainfluenzavirus. XX RN [1] RP 1-1540 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT "Influenza Sequencing Activity group"; RL Unpublished. XX RN [2] RP 1-1540 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT ; RL Submitted (09-MAR-2020) to the INSDC. RL WHO Collaborating Center for Surveillance, Epidemiology and Control of RL Influenza, Influenza Division, Centers for Disease Control and Prevention, RL 1600 Clifton Road, N.E., Atlanta, GA 30333, USA XX DR MD5; d95f50a583411bb2f675cf57c6ca38f8. XX CC ##FluData-START## CC EPI_ISOLATE_ID :: EPI_ISL_409230 CC NAME :: A/Georgia/47/2019 CC TYPE :: H1N1 CC Segment_name :: NP CC HOST_AGE :: 2 CC PASSAGE :: Original CC LOCATION :: United States / Georgia CC COLLECT_DATE :: 28-Dec-2019 CC Lineage :: A(H1N1)pdm09 CC SPECIMEN_ID :: 20B0043872 ORIGINAL CC SENDER_LAB :: Georgia Public Health Laboratory CC SEQLAB_SAMPLE_ID :: 3026054732 CC EPI_SEQUENCE_ID :: EPI1684673 CC ##FluData-END## XX FH Key Location/Qualifiers FH FT source 1..1540 FT /organism="Influenza A virus" FT /segment="5" FT /host="Homo sapiens" FT /strain="A/Georgia/47/2019" FT /serotype="H1N1" FT /mol_type="viral cRNA" FT /country="USA:Georgia" FT /collection_date="28-Dec-2019" FT /db_xref="taxon:11320" FT gene 34..1530 FT /gene="NP" FT CDS 34..1530 FT /codon_start=1 FT /gene="NP" FT /product="nucleocapsid protein" FT /protein_id="QIJ23545.1" FT /translation="MASQGTKRSYEQMETGGERQDTTEIRASVGRMIGGIGRFYIQMCT FT ELKLSDYDGRLIQNSITIERMVLSSFDERRNKYLEEHPSAGKDPKKTGGPIYRRIDGKW FT TRELILYDKEEIRRVWRQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRM FT CSLMQGSTLPRRSGAAGAAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTRVAYERM FT CNILKGKFQTAAQRAMMDQVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVY FT GLAVASGHDFEREGYSLVGIDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFED FT LRVSSFIRGKKVIPRGKLSTRGVQIASNENVETMDSNTLELRSRYWAIRTRSGGNTNQQ FT KASAGQISVQPTFSVQRNLPFERATIMAAFSGNNEGRTSDMRTEIIRMMESAKPEDLSF FT QGRGVFELSDEKATNPIVPSFDMSNEGSYFFGDNAEEYDN" XX SQ Sequence 1540 BP; 529 A; 296 C; 389 G; 326 T; 0 other; gtagataatc actcaatgag tgacatcgaa gccatggcgt ctcaaggcac caaacgatca 60 tatgaacaaa tggagactgg tggggagcgc caggatacca cagaaatcag agcatctgtt 120 ggaagaatga ttggtggaat cgggagattc tacatccaaa tgtgcactga actaaaactc 180 agtgattatg atggacgact aatccagaac agcataacaa tagagaggat ggtgctttct 240 tcttttgatg agagaagaaa taaataccta gaagagcatc caagtgctgg gaaggaccct 300 aagaaaacag gaggacccat ctatagaaga atagacggaa aatggacaag agaactcatc 360 ctttatgaca aagaagaaat aagaagagtt tggcgccaag caaacaatgg cgaagatgca 420 acagcaggtc ttactcatat catgatttgg cattccaatc tgaatgatgc cacatatcag 480 aggacaagag cacttgttcg cactggaatg gatcccagaa tgtgctctct aatgcaaggt 540 tcaacacttc ccagaaggtc tggtgccgca ggtgctgcag taaaaggagt tggaacaata 600 gctatggagt taatcagaat gataaaacgt ggaatcaatg accgaaattt ctggaggggt 660 gaaaatggaa gaaggacaag agttgcttat gaaagaatgt gcaatatcct caaaggaaaa 720 tttcaaacag ctgcccagag ggcaatgatg gatcaagtaa gagaaagtcg aaacccagga 780 aacgctgaga ttgaagacct cattttcctg gcacggtcag cactcattct gagaggatca 840 gttgcacata aatcctgcct gcctgcttgt gtgtatgggc ttgcagtagc aagtggccat 900 gactttgaaa gggaagggta ctcactggtc gggatagacc cattcaaatt actccaaaac 960 agtcaagtgg tcagcctgat gagaccaaat gaaaatccag ctcacaagag tcaattggta 1020 tggatggcat gccactctgc tgcatttgaa gatttaagag tatcaagttt cataagagga 1080 aagaaagtga tcccaagagg aaagctttcc acaagagggg ttcagattgc ttcaaatgag 1140 aatgtggaaa ccatggactc caataccctg gaactaagaa gcagatactg ggccataaga 1200 accagaagtg gaggaaatac caatcaacag aaggcatctg caggccagat cagtgtgcag 1260 cctacattct cagtgcagcg aaatctccct tttgaaagag caaccattat ggcagcattc 1320 agcgggaaca atgaaggacg gacatccgac atgcgaacag aaattataag aatgatggaa 1380 agtgcaaagc cagaggattt gtccttccag gggcggggag tcttcgagct ctcggacgaa 1440 aaggcaacga acccgatcgt gccttccttt gacatgagta atgaagggtc ttatttcttc 1500 ggagacaatg cagaggagta tgacaattga agaaaaatac 1540 // ID MT167096; SV 1; linear; viral cRNA; STD; VRL; 1433 BP. XX AC MT167096; XX PR Project:PRJNA37813; XX DT 17-MAR-2020 (Rel. 144, Created) DT 17-MAR-2020 (Rel. 144, Last updated, Version 1) XX DE Influenza A virus (A/Georgia/47/2019(H1N1)) segment 6 neuraminidase (NA) DE gene, complete cds. XX KW . XX OS Influenza A virus OC Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Insthoviricetes; OC Articulavirales; Orthomyxoviridae; Alphainfluenzavirus. XX RN [1] RP 1-1433 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT "Influenza Sequencing Activity group"; RL Unpublished. XX RN [2] RP 1-1433 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT ; RL Submitted (09-MAR-2020) to the INSDC. RL WHO Collaborating Center for Surveillance, Epidemiology and Control of RL Influenza, Influenza Division, Centers for Disease Control and Prevention, RL 1600 Clifton Road, N.E., Atlanta, GA 30333, USA XX DR MD5; de251afc1241057cc3eb214cdbf61f08. XX CC ##FluData-START## CC EPI_ISOLATE_ID :: EPI_ISL_409230 CC NAME :: A/Georgia/47/2019 CC TYPE :: H1N1 CC Segment_name :: NA CC HOST_AGE :: 2 CC PASSAGE :: Original CC LOCATION :: United States / Georgia CC COLLECT_DATE :: 28-Dec-2019 CC Lineage :: A(H1N1)pdm09 CC SPECIMEN_ID :: 20B0043872 ORIGINAL CC SENDER_LAB :: Georgia Public Health Laboratory CC SEQLAB_SAMPLE_ID :: 3026054732 CC EPI_SEQUENCE_ID :: EPI1684678 CC ##FluData-END## XX FH Key Location/Qualifiers FH FT source 1..1433 FT /organism="Influenza A virus" FT /segment="6" FT /host="Homo sapiens" FT /strain="A/Georgia/47/2019" FT /serotype="H1N1" FT /mol_type="viral cRNA" FT /country="USA:Georgia" FT /collection_date="28-Dec-2019" FT /db_xref="taxon:11320" FT gene 9..1418 FT /gene="NA" FT CDS 9..1418 FT /codon_start=1 FT /gene="NA" FT /product="neuraminidase" FT /protein_id="QIJ23546.1" FT /translation="MNPNQKIITIGSICMTIGMANLILQIGNIISIWVSHSIQTGNQSQ FT IETCNKNVITYENNTWVNQTYVNISNTNSAARQSVASVKLAGNSSLCPVSGWAIYSKDN FT SVRIGSKGDVFVIREPFISCSPLECRTFFLTQGALLNDKHSNGTIKDRSPYRTLMSCPI FT GEVPSPYNSRFESVAWSASACHDGTNWLTIGISGPDSGAVAVLKYNGIITDTIKSWRNN FT ILRTQESECACVNGSCFTIMTDGPSDGQASYKIFRIEKGKIIKSVEMKAPNYHYEECSC FT YPDSSEITCVCRDNWHGSNRPWVSFNQNLEYQMGYICSGVFGDNPRPNDKTGSCGPVSS FT NGANGVKGFSFKYGNGVWIGRTKSISSRKGFEMIWDPNGWTGTDNKFSKKQDIVGINEW FT SGYSGSFVQHPELTGLNCIRPCFWVELIRGRPEENTIWTSGSSISFCGVDSDIVGWSWP FT DGAELPFTIDK" XX SQ Sequence 1433 BP; 465 A; 266 C; 332 G; 370 T; 0 other; agtttaaaat gaatccaaac caaaagataa taaccattgg ctctatctgt atgacaattg 60 gaatggctaa cttaatatta caaattggaa acataatctc aatatgggtt agccactcaa 120 ttcaaaccgg aaaccaaagc cagatcgaaa catgcaataa aaacgtcatt acttatgaaa 180 acaatacttg ggtaaatcag acatatgtta acatcagcaa taccaactct gctgctagac 240 agtcagtggc ttccgtgaaa ttagcgggca actcctctct ctgccctgtc agtggatggg 300 ctatatacag taaagacaac agtgtaagaa tcggttccaa gggggatgtg tttgtcataa 360 gggaaccatt catatcatgc tctcccttgg aatgcagaac cttcttcttg actcaagggg 420 ctttgctaaa tgacaaacat tccaatggaa ccattaaaga cagaagccca tatcgaaccc 480 taatgagctg tcctattggt gaagttccct ctccatacaa ctcaagattt gagtcagtcg 540 cttggtcagc aagtgcttgt catgatggca ccaattggct aacaattgga atttctggcc 600 cagacagtgg ggcagtggct gtgttaaaat acaatggcat aataacagac actatcaaga 660 gttggaggaa caatatattg agaacacaag agtctgaatg tgcatgtgta aatggttctt 720 gctttaccat aatgaccgat ggaccaagtg atggacaggc ctcatacaaa atcttcagaa 780 tagaaaaggg aaagataatc aaatcagtcg aaatgaaagc ccctaattat cactatgagg 840 aatgctcctg ttaccctgat tctagtgaaa tcacatgtgt gtgcagggat aactggcatg 900 gctcgaatcg accgtgggtg tctttcaacc agaatctgga ataccagatg ggatacatat 960 gcagtggggt tttcggagac aatccacgcc ctaatgataa gacaggcagt tgtggtccag 1020 tatcgtctaa tggagcaaat ggggtaaaag gattttcatt caaatacggc aatggtgttt 1080 ggatagggag aactaagagc attagttcaa gaaaaggttt tgagatgatt tgggatccga 1140 atggatggac tgggactgac aataaattct caaaaaagca agatatcgta ggaataaatg 1200 agtggtcagg gtatagcggg agttttgttc agcatccaga actaacaggg ctgaattgta 1260 taagaccttg cttctgggtt gaactaataa gaggacgacc cgaagagaac acaatctgga 1320 ctagtgggag cagcatatcc ttttgtggtg tagacagtga cattgtgggt tggtcttggc 1380 cagacggtgc tgagttgcca tttaccattg acaagtaatt tgttcaaaaa act 1433 // ID MT167097; SV 1; linear; viral cRNA; STD; VRL; 1002 BP. XX AC MT167097; XX PR Project:PRJNA37813; XX DT 17-MAR-2020 (Rel. 144, Created) DT 17-MAR-2020 (Rel. 144, Last updated, Version 1) XX DE Influenza A virus (A/Georgia/47/2019(H1N1)) segment 7 matrix protein 2 (M2) DE and matrix protein 1 (M1) genes, complete cds. XX KW . XX OS Influenza A virus OC Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Insthoviricetes; OC Articulavirales; Orthomyxoviridae; Alphainfluenzavirus. XX RN [1] RP 1-1002 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT "Influenza Sequencing Activity group"; RL Unpublished. XX RN [2] RP 1-1002 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT ; RL Submitted (09-MAR-2020) to the INSDC. RL WHO Collaborating Center for Surveillance, Epidemiology and Control of RL Influenza, Influenza Division, Centers for Disease Control and Prevention, RL 1600 Clifton Road, N.E., Atlanta, GA 30333, USA XX DR MD5; 450785b1294558cce6ba4fa395c2af82. XX CC ##FluData-START## CC EPI_ISOLATE_ID :: EPI_ISL_409230 CC NAME :: A/Georgia/47/2019 CC TYPE :: H1N1 CC Segment_name :: M CC HOST_AGE :: 2 CC PASSAGE :: Original CC LOCATION :: United States / Georgia CC COLLECT_DATE :: 28-Dec-2019 CC Lineage :: A(H1N1)pdm09 CC SPECIMEN_ID :: 20B0043872 ORIGINAL CC SENDER_LAB :: Georgia Public Health Laboratory CC SEQLAB_SAMPLE_ID :: 3026054732 CC EPI_SEQUENCE_ID :: EPI1684675 CC ##FluData-END## XX FH Key Location/Qualifiers FH FT source 1..1002 FT /organism="Influenza A virus" FT /segment="7" FT /host="Homo sapiens" FT /strain="A/Georgia/47/2019" FT /serotype="H1N1" FT /mol_type="viral cRNA" FT /country="USA:Georgia" FT /collection_date="28-Dec-2019" FT /db_xref="taxon:11320" FT gene 14..995 FT /gene="M2" FT CDS join(14..39,728..995) FT /codon_start=1 FT /gene="M2" FT /product="matrix protein 2" FT /protein_id="QIJ23548.1" FT /translation="MSLLTEVETPTRSEWECRCSGSNDPLVIAANIIGILHLILWITDR FT LFFKCIYRRFKYGLKRGPSTEGVPDSMREEYQQEQQSAVDVDDGHFVNIELE" FT gene 14..772 FT /gene="M1" FT CDS 14..772 FT /codon_start=1 FT /gene="M1" FT /product="matrix protein 1" FT /protein_id="QIJ23547.1" FT /translation="MSLLTEVETYVLSIIPSGPLKAEIAQRLESVFAGKNTDLEALMEW FT LKTRPILSPLTKGILGFVFTLTVPSERGLQRRRFIQNALNGNGDPNNMDRAVKLYKKLK FT REITFHGAKEVSLSYSTGALASCMGLIYNRMGTVTTEAAFGLVCATCEQIADSQHRSHR FT QMATTTNPLIRHENRMVLASTTAKAMEQVAGSSEQAAEAMEVANKTRQMVHAMRTIGTH FT PSSSAGLRDDLLENLQAYQKRMGVQMQRFK" XX SQ Sequence 1002 BP; 301 A; 209 C; 252 G; 240 T; 0 other; tagatgttta aagatgagtc ttctaaccga ggtcgaaacg tacgttcttt ctatcatccc 60 gtcaggcccc ctcaaagccg agatcgcaca gagactggaa agtgtctttg caggaaagaa 120 cacagatctt gaggctctca tggaatggct aaagacaaga ccaatcttgt cacctctgac 180 taagggaatt ttaggatttg tgttcacgct caccgtgccc agtgagcgag gactgcagcg 240 tagacgcttt atccaaaatg ccctaaatgg aaatggggac ccgaacaaca tggatagagc 300 agttaaacta tacaagaaac tcaaaagaga aataacgttc catggggcca aggaggtgtc 360 actaagctat tcaactggtg cacttgcaag ttgcatgggc ctcatataca acaggatggg 420 aacagtgacc acagaagctg ctttcggtct agtttgtgcc acttgtgaac agattgctga 480 ttcacagcat cggtctcaca gacaaatggc tactaccaca aatccactaa tcaggcatga 540 aaacagaatg gtgctggcta gcactacggc aaaggctatg gaacaggtgg ctggatcgag 600 tgaacaggca gcggaggcca tggaggttgc taataagact aggcagatgg tacatgcaat 660 gagaactatt ggaactcatc ctagctccag tgctggtcta agagatgacc ttcttgaaaa 720 tttgcaggcc taccagaagc gaatgggagt gcagatgcag cggttcaaat gatcctctcg 780 tcattgcagc aaacatcatt gggatcttgc acctgatatt gtggattact gatcgtcttt 840 ttttcaaatg catttatcgt cgctttaaat acggtttgaa aagagggcct tctacggaag 900 gagtgcctga ttccatgagg gaagaatatc aacaggagca gcagagtgct gtggatgttg 960 acgatggtca ttttgtcaac atagagctag agtaaaaaac ta 1002 // ID MT167098; SV 1; linear; viral cRNA; STD; VRL; 865 BP. XX AC MT167098; XX PR Project:PRJNA37813; XX DT 17-MAR-2020 (Rel. 144, Created) DT 17-MAR-2020 (Rel. 144, Last updated, Version 1) XX DE Influenza A virus (A/Georgia/47/2019(H1N1)) segment 8 nuclear export DE protein (NEP) and nonstructural protein 1 (NS1) genes, complete cds. XX KW . XX OS Influenza A virus OC Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Insthoviricetes; OC Articulavirales; Orthomyxoviridae; Alphainfluenzavirus. XX RN [1] RP 1-865 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT "Influenza Sequencing Activity group"; RL Unpublished. XX RN [2] RP 1-865 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT ; RL Submitted (09-MAR-2020) to the INSDC. RL WHO Collaborating Center for Surveillance, Epidemiology and Control of RL Influenza, Influenza Division, Centers for Disease Control and Prevention, RL 1600 Clifton Road, N.E., Atlanta, GA 30333, USA XX DR MD5; 530193758e80c33475f62b013ece3fe2. XX CC ##FluData-START## CC EPI_ISOLATE_ID :: EPI_ISL_409230 CC NAME :: A/Georgia/47/2019 CC TYPE :: H1N1 CC Segment_name :: NS CC HOST_AGE :: 2 CC PASSAGE :: Original CC LOCATION :: United States / Georgia CC COLLECT_DATE :: 28-Dec-2019 CC Lineage :: A(H1N1)pdm09 CC SPECIMEN_ID :: 20B0043872 ORIGINAL CC SENDER_LAB :: Georgia Public Health Laboratory CC SEQLAB_SAMPLE_ID :: 3026054732 CC EPI_SEQUENCE_ID :: EPI1684674 CC ##FluData-END## XX FH Key Location/Qualifiers FH FT source 1..865 FT /organism="Influenza A virus" FT /segment="8" FT /host="Homo sapiens" FT /strain="A/Georgia/47/2019" FT /serotype="H1N1" FT /mol_type="viral cRNA" FT /country="USA:Georgia" FT /collection_date="28-Dec-2019" FT /db_xref="taxon:11320" FT gene 15..852 FT /gene="NEP" FT /gene_synonym="NS2" FT CDS join(15..44,517..852) FT /codon_start=1 FT /gene="NEP" FT /gene_synonym="NS2" FT /product="nuclear export protein" FT /note="nonstructural protein 2" FT /protein_id="QIJ23550.1" FT /translation="MESNTMSSFQDILMRMSKMQLGSSSEDLSGMVTRFESLKIYRDSL FT GEAVMRMGDLHYLQSRNEKWREQLGQKFEEIRWLIEEIRHRLKATENSFEQITFMQALQ FT LLLEVEQEIRAFSFQFI" FT gene 15..674 FT /gene="NS1" FT CDS 15..674 FT /codon_start=1 FT /gene="NS1" FT /product="nonstructural protein 1" FT /protein_id="QIJ23549.1" FT /translation="MESNTMSSFQVDCFLWHIRKRFADNGLGDAPFLDRLRRDQKSLKG FT RGNTLGLDIKTATLVGKQIVEWILKEESSETLRMAIAXVPTSRYISDMTLEEMSRDWFM FT LMPRQKIIGPLCVRLDQAVMDKNIVLEANFSVIFNRLETLVLLRAFTEEGIIVGEISPL FT PSLPGHTYEDVKNAVGVLIGGLEWNGNTVRVSENIQRFAWRSCDENGRPSLPPEQK" XX SQ Sequence 865 BP; 279 A; 164 C; 206 G; 215 T; 1 other; gtgacaaaaa cataatggaa tccaacacca tgtcaagctt tcaggtagac tgttttcttt 60 ggcatattcg caagcgattt gcagacaatg gattgggtga tgccccattc ctcgatcggc 120 tacgccgaga tcaaaagtcc ttaaaaggaa gaggcaacac ccttggcctc gacatcaaaa 180 cagccactct tgttgggaaa caaattgtgg aatggatttt gaaagaggaa tccagcgaga 240 cacttagaat ggcaattgca kctgtaccta cttcgcgtta catttctgac atgaccctcg 300 aggaaatgtc acgagactgg ttcatgctta tgcctaggca aaagataata ggccctcttt 360 gcgtgcgatt ggaccaggcg gtcatggata agaacatagt actggaagca aacttcagtg 420 taatcttcaa ccgattagag accttggtac tactaagggc tttcactgag gagggaataa 480 tagttggaga aatttcacca ttaccttctc ttccaggaca tacttatgag gatgtcaaaa 540 atgcagttgg ggtcctcatc ggaggacttg agtggaatgg taacacggtt cgagtctctg 600 aaaatataca gagattcgct tggagaagct gtgatgagaa tgggagacct tcactacctc 660 cagagcagaa atgagaagtg gcgggaacaa ttgggacaga aatttgagga aataaggtgg 720 ttaattgaag aaatacgaca cagattgaaa gcgacagaga atagtttcga acaaataaca 780 tttatgcaag ccttacaact actgcttgaa gtagagcaag agataagagc tttctcgttt 840 cagtttattt aatgataaaa aacac 865 // ID MT167099; SV 1; linear; viral cRNA; STD; VRL; 2316 BP. XX AC MT167099; XX PR Project:PRJNA37813; XX DT 17-MAR-2020 (Rel. 144, Created) DT 17-MAR-2020 (Rel. 144, Last updated, Version 1) XX DE Influenza A virus (A/Delaware/02/2020(H1N1)) segment 1 polymerase PB2 (PB2) DE gene, complete cds. XX KW . XX OS Influenza A virus OC Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Insthoviricetes; OC Articulavirales; Orthomyxoviridae; Alphainfluenzavirus. XX RN [1] RP 1-2316 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT "Influenza Sequencing Activity group"; RL Unpublished. XX RN [2] RP 1-2316 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT ; RL Submitted (09-MAR-2020) to the INSDC. RL WHO Collaborating Center for Surveillance, Epidemiology and Control of RL Influenza, Influenza Division, Centers for Disease Control and Prevention, RL 1600 Clifton Road, N.E., Atlanta, GA 30333, USA XX DR MD5; d241e871fe00ed206bb8147d10878ccd. XX CC ##FluData-START## CC EPI_ISOLATE_ID :: EPI_ISL_409129 CC NAME :: A/Delaware/02/2020 CC TYPE :: H1N1 CC Segment_name :: PB2 CC HOST_AGE :: 68 CC HOST_GENDER :: F CC PASSAGE :: Original CC LOCATION :: United States / Delaware CC COLLECT_DATE :: 03-Jan-2020 CC Lineage :: A(H1N1)pdm09 CC RESIST_TO_OSELTAMIVIR :: Sensitive CC RESIST_TO_ZANAMVIR :: Sensitive CC SPECIMEN_ID :: F916622 ORIGINAL CC SENDER_LAB :: Delaware Public Health Lab CC SEQLAB_SAMPLE_ID :: 3026054542 CC EPI_SEQUENCE_ID :: EPI1683903 CC ##FluData-END## XX FH Key Location/Qualifiers FH FT source 1..2316 FT /organism="Influenza A virus" FT /segment="1" FT /host="Homo sapiens" FT /strain="A/Delaware/02/2020" FT /serotype="H1N1" FT /mol_type="viral cRNA" FT /country="USA:Delaware" FT /collection_date="03-Jan-2020" FT /db_xref="taxon:11320" FT gene 16..2295 FT /gene="PB2" FT CDS 16..2295 FT /codon_start=1 FT /gene="PB2" FT /product="polymerase PB2" FT /protein_id="QIJ23551.1" FT /translation="MERIKELRDLMSQSRTREILTKTTVDHMAIIKKYTSGRQEKNPAL FT RMKWMMAMKYPITADKRIMDIIPERNEQGQTLWSKINDAGSDRVMVSPLAVTWWNRNGP FT TTSTVHYPKVYKTYFEKVERLKHGTFGPVHFRNQVKIRRRVDTNPGHADLSAKEAQDVI FT MEVVFPNEVGARILTSESQLAITKEKKEELQNCKIAPLMVAYMLERELVRKTRFLPVAG FT GTSSVYIEVLHLTQGTCWEQMYTPGGEVRNDDVDQSLIIAARNIVRRAAVSADPLASLL FT EMCHSTQIGGVKMVDILKQNPTEEQAVDICKAAIGLRISSSFSFGGFTFKRTSGSSVKK FT EEEMLTGNLQTLKLRVHEGYEEFTMVGRRATAILRKATRRLIQLIVSGRDEQSIAEAII FT VAMVFSQEDCMIKAVRGDLNFVNRANQRLNPMHQLLRHFQKDAKVLFQNWGIETIDNVM FT GMIGILPDMTPSTEMSLRGIRVSKMGVDEYSSTERVVVSIDRFLRVRDQRGNVLLSPEE FT VSETQGTEKLTITYSSSMMWEINGPESVLINTYQWIIRNWEIVKIQWSQDPTMLYNKME FT FEPFQSLVPKATRSRYSGFVRTLFQQMRDVLGTFDTVQIIKLLPFAAAPPEQSRMQFSS FT LTVNVRGSGLRILVRGNSPVFNYNKATKRLTILGKDAGALTEDPDEGTSGVESAVLRGF FT LILGKEDKRYGPALSINELSNLAKGEKANVLIGQGDIVLVMKRKRDSSILTDSQTATKR FT IRMAIN" XX SQ Sequence 2316 BP; 794 A; 435 C; 584 G; 503 T; 0 other; tcaaatatat tcaatatgga gagaataaaa gagctgagag atctaatgtc gcagtcccgc 60 actcgcgaga tactcactaa gaccactgtg gaccatatgg ccatcatcaa aaagtacaca 120 tcgggaaggc aagagaagaa ccccgcgctc agaatgaagt ggatgatggc aatgaaatac 180 ccaattacgg cagacaagag aataatggac ataatcccag agaggaatga acaaggacaa 240 accctctgga gcaaaataaa cgatgctgga tcagaccgag tgatggtatc acctctggca 300 gtaacatggt ggaataggaa tggtccaaca acaagtacag ttcattaccc taaggtatat 360 aaaacttatt tcgaaaaggt cgaaaggttg aaacatggta ccttcggccc tgtccacttc 420 agaaatcaag ttaaaataag gaggagagtt gatacaaacc ctggccatgc agatctcagt 480 gccaaggagg cacaggatgt gatcatggaa gttgttttcc caaatgaagt gggggcaaga 540 atactgacat cagagtcaca gctggcaata acaaaagaga agaaagaaga gctccagaat 600 tgtaaaattg ctcccttgat ggtggcgtac atgctagaaa gagaattggt ccgtaaaaca 660 aggtttctcc cggtagccgg tgggacaagc agtgtttata ttgaggtgtt gcacttgacc 720 caagggacgt gctgggagca gatgtacact ccaggaggag aagtgagaaa tgatgatgtt 780 gaccaaagct tgattatcgc tgctagaaac atagtaagaa gagcagcagt gtcagcagac 840 ccattagcat ctctcttgga aatgtgccac agcacacaga ttggaggtgt gaagatggtg 900 gacatcctta aacagaatcc aactgaggag caagccgtag acatatgcaa ggcagcaata 960 gggttgagga tcagctcatc tttcagtttt ggtgggttca ctttcaaaag gacaagcgga 1020 tcatcagtca agaaagaaga agaaatgcta acgggcaacc tccaaacact gaaattaaga 1080 gtacatgaag ggtatgaaga attcacaatg gttgggagaa gagcaacagc tattctcaga 1140 aaggcaacca ggagattgat ccaattaata gtaagcggaa gagacgagca gtcaatagct 1200 gaagcaataa ttgtggccat ggtattctca caagaggatt gcatgatcaa agcagttagg 1260 ggcgatctga actttgtcaa tagggcaaac cagagactga atcccatgca ccaactcttg 1320 aggcatttcc aaaaagatgc aaaagtgctt ttccagaact ggggaattga aaccatcgac 1380 aatgtgatgg gaatgatcgg aatactgccc gacatgaccc caagtacgga gatgtcactg 1440 agaggaataa gagtcagcaa gatgggagta gatgaatact ccagcacgga gagagtggta 1500 gtgagtattg accgatttct gagggttaga gatcaaagag gaaacgtact gttgtctccc 1560 gaagaagtta gtgaaacgca aggaactgag aagttgacaa taacttattc gtcatcaatg 1620 atgtgggaga tcaacggccc tgagtcagtg ctaatcaaca cttatcaatg gataatcaga 1680 aactgggaaa ttgtgaaaat tcaatggtca caagacccca caatgttata caacaaaatg 1740 gaatttgaac catttcagtc tcttgttcct aaggcaacca gaagccggta cagtggattc 1800 gtaaggacac tgttccagca aatgagggat gtgcttggga catttgacac tgtccaaata 1860 ataaaacttc tcccctttgc tgctgctcca ccagaacaga gcaggatgca attttcttca 1920 ttgactgtga atgtgagagg atcagggtta aggatactgg taagaggcaa ttctccagta 1980 ttcaattaca acaaggcaac caaacgactt acgattcttg gaaaggatgc aggtgcattg 2040 actgaagatc cagatgaagg cacatctggg gtggagtctg ctgtcctgag aggattcctc 2100 attttaggca aagaagacaa gagatatggc ccagcattaa gcatcaatga actgagcaat 2160 cttgcaaaag gagagaaagc taatgtgcta attgggcagg gggacatagt gttagtaatg 2220 aaacgaaaac gggactctag catacttact gacagccaga cagcgaccaa aagaattcgg 2280 atggccatca attagtgtcg aattgtttaa aaacga 2316 // ID MT167100; SV 1; linear; viral cRNA; STD; VRL; 2208 BP. XX AC MT167100; XX PR Project:PRJNA37813; XX DT 17-MAR-2020 (Rel. 144, Created) DT 17-MAR-2020 (Rel. 144, Last updated, Version 1) XX DE Influenza A virus (A/Delaware/02/2020(H1N1)) segment 3 polymerase PA (PA) DE and PA-X protein (PA-X) genes, complete cds. XX KW . XX OS Influenza A virus OC Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Insthoviricetes; OC Articulavirales; Orthomyxoviridae; Alphainfluenzavirus. XX RN [1] RP 1-2208 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT "Influenza Sequencing Activity group"; RL Unpublished. XX RN [2] RP 1-2208 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT ; RL Submitted (09-MAR-2020) to the INSDC. RL WHO Collaborating Center for Surveillance, Epidemiology and Control of RL Influenza, Influenza Division, Centers for Disease Control and Prevention, RL 1600 Clifton Road, N.E., Atlanta, GA 30333, USA XX DR MD5; c34ba4c394399e460befea45ee44afa0. XX CC ##FluData-START## CC EPI_ISOLATE_ID :: EPI_ISL_409129 CC NAME :: A/Delaware/02/2020 CC TYPE :: H1N1 CC Segment_name :: PA CC HOST_AGE :: 68 CC HOST_GENDER :: F CC PASSAGE :: Original CC LOCATION :: United States / Delaware CC COLLECT_DATE :: 03-Jan-2020 CC Lineage :: A(H1N1)pdm09 CC RESIST_TO_OSELTAMIVIR :: Sensitive CC RESIST_TO_ZANAMVIR :: Sensitive CC SPECIMEN_ID :: F916622 ORIGINAL CC SENDER_LAB :: Delaware Public Health Lab CC SEQLAB_SAMPLE_ID :: 3026054542 CC EPI_SEQUENCE_ID :: EPI1683901 CC ##FluData-END## XX FH Key Location/Qualifiers FH FT source 1..2208 FT /organism="Influenza A virus" FT /segment="3" FT /host="Homo sapiens" FT /strain="A/Delaware/02/2020" FT /serotype="H1N1" FT /mol_type="viral cRNA" FT /country="USA:Delaware" FT /collection_date="03-Jan-2020" FT /db_xref="taxon:11320" FT gene 13..2163 FT /gene="PA" FT CDS 13..2163 FT /codon_start=1 FT /gene="PA" FT /product="polymerase PA" FT /protein_id="QIJ23552.1" FT /translation="MEDFVRQCFNPMIVELAEKAMKEYGEDPKIETNKFAAICTHLEVC FT FMYSDFHFIDERGESIIVESGDPNALLKHRFEIIEGRDRIMAWTVVNSICNTTGIEKPK FT FLPDLYDYKENRFIEIGVTRREVHIYYLEKANKIKSEKTHIHIFSFTGEEMATKADYTL FT DEESRARIKTRLFTIRQEMASRSLWDSFRQSERGEETIEEKFEITGTMRKLADQSLPPN FT FSSLENFRAYVDGFEPNGCIEGKLSQMSKEVNAKIEPFLRTTPRPLRLPDGPLCHQRSK FT FLLMDALKLSIEDPSHEGEGIPLYDAIKCMKTFFDWKEPKIVKPHEKGVNPNYLMAWKQ FT VLAELQDIENEEKIPRTKNMKKTSQLKWALGENMAPEKVDFDDCKDVGDLKQYDSDEPE FT PRSLASWVQNEFNKACELTDSSWIELDEIGEDVAPIEHIASMRRNYFTAEVSHCRATEY FT IMKGVYINTALLNASCAAMDDFQLIPMISKCRTKEGRRKTNLYGFIIKGRSHLRNDTDV FT VNFVSMEFSLTDPRLEPHKWEKYCVLEIGDMLLRTAIGQVSRPMFLYVRTNGTSKIKMK FT WGMEMRRCLLQSLQQIESMIEAESSVKEKDMTKEFFENKSETWPIGESPRGVEEGSIGK FT VCRTLLAKSVFNSLYASPQLEGFSAESRKLLLIVQALRDNLEPGTFDLGGLYEAIEECL FT INDPWVLLNASWFNSFLTHALK" FT gene 13..712 FT /gene="PA-X" FT CDS join(13..582,584..712) FT /codon_start=1 FT /ribosomal_slippage FT /gene="PA-X" FT /product="PA-X protein" FT /protein_id="QIJ23553.1" FT /translation="MEDFVRQCFNPMIVELAEKAMKEYGEDPKIETNKFAAICTHLEVC FT FMYSDFHFIDERGESIIVESGDPNALLKHRFEIIEGRDRIMAWTVVNSICNTTGIEKPK FT FLPDLYDYKENRFIEIGVTRREVHIYYLEKANKIKSEKTHIHIFSFTGEEMATKADYTL FT DEESRARIKTRLFTIRQEMASRSLWDSFVSPKEAKKQLKKSLKLQELCASLPTKVSHQT FT SPALKTSEPM" XX SQ Sequence 2208 BP; 746 A; 420 C; 514 G; 528 T; 0 other; tactgatcca aaatggaaga ctttgtgcga caatgcttca atccaatgat cgtcgagctt 60 gcggaaaagg caatgaaaga atatggggaa gaccccaaaa ttgaaactaa taagtttgct 120 gcaatttgca cacatttgga agtctgtttc atgtattcgg atttccattt cattgatgaa 180 cggggtgaat caataattgt agaatctggt gacccaaatg cactattgaa gcaccgattt 240 gagataattg aaggaagaga ccgaatcatg gcttggacag tggtgaacag tatatgtaac 300 acaacaggga tagagaagcc taaatttctt cctgatttgt atgattacaa agagaaccgg 360 ttcattgaaa ttggagtaac acggagagaa gttcacatat attacctaga gaaagccaac 420 aaaataaaat ctgagaagac acacattcac atcttttcat tcactggaga ggagatggcc 480 accaaagcgg actacactct tgacgaagaa agcagagcaa gaatcaaaac taggcttttc 540 actataagac aagaaatggc cagtaggagt ctatgggatt cctttcgtca gtccgaaaga 600 ggcgaagaaa caattgaaga aaagtttgaa attacaggaa ctatgcgcaa gcttgccgac 660 caaagtctcc caccaaactt ctccagcctt gaaaacttca gagcctatgt agatggattc 720 gagccgaacg gctgcattga gggtaagctt tcccaaatgt caaaagaagt gaacgccaaa 780 attgaaccat tcttgaggac gacaccacgc cctctcagat tacctgatgg acctctttgc 840 catcagcggt caaagttcct gctgatggat gctctgaaat taagcattga agacccgagt 900 cacgaggggg aaggaatacc actatatgat gcaatcaaat gcatgaagac attctttgac 960 tggaaagagc ccaaaatagt caaaccacat gagaaaggcg taaatcccaa ttacctcatg 1020 gcttggaagc aggtgctagc agagctacag gacattgaaa atgaagagaa aatcccaagg 1080 acaaagaaca tgaagaaaac aagccaattg aagtgggcac tcggtgaaaa tatggcacct 1140 gaaaaagtgg actttgatga ctgtaaagat gttggagacc ttaaacagta tgacagtgat 1200 gagccagagc ccagatctct agcaagctgg gtccaaaatg aattcaataa ggcatgtgaa 1260 ttgactgatt caagctggat agaacttgat gaaataggag aagatgttgc cccaattgaa 1320 catatagcaa gcatgaggag gaactatttt acagcagaag tgtctcactg cagggctact 1380 gaatacataa tgaagggagt gtacataaat acagccttgc ttaatgcatc ctgtgcagcc 1440 atggatgact ttcagctgat tccaatgata agcaagtgta ggaccaaaga aggaagacgg 1500 aaaacaaacc tttatgggtt cattataaaa ggaaggtctc atttgagaaa tgatactgat 1560 gtggtgaact ttgtaagtat ggagttctca ctcactgatc caagactgga accacacaaa 1620 tgggaaaaat actgtgttct tgaaatagga gacatgctat tgaggactgc gataggtcaa 1680 gtgtcgaggc ccatgttcct atatgtgaga accaatggaa cctccaagat caagatgaaa 1740 tggggcatgg aaatgaggcg ctgccttctt caatctcttc aacagataga gagcatgatt 1800 gaagccgagt cttctgtcaa agagaaagac atgaccaagg aattctttga aaacaaatcg 1860 gaaacatggc caatcggaga atcacccagg ggagtggagg aaggctctat tggaaaagtg 1920 tgcagaacct tactggcaaa atctgtgttc aacagtctat atgcttctcc acaacttgag 1980 gggttttcgg ccgaatcaag aaaattgctt ctcattgttc aggcacttag ggacaacctg 2040 gaacctggaa cctttgatct tggggggcta tatgaagcaa tcgaggagtg cttgattaat 2100 gatccctggg ttttgcttaa tgcatcttgg ttcaactcct tcctcacaca tgcactgaag 2160 tagttgtggc aatgctacta tttgctatcc atattgtcca aaaaagta 2208 // ID MT167101; SV 1; linear; viral cRNA; STD; VRL; 1752 BP. XX AC MT167101; XX PR Project:PRJNA37813; XX DT 17-MAR-2020 (Rel. 144, Created) DT 17-MAR-2020 (Rel. 144, Last updated, Version 1) XX DE Influenza A virus (A/Delaware/02/2020(H1N1)) segment 4 hemagglutinin (HA) DE gene, complete cds. XX KW . XX OS Influenza A virus OC Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Insthoviricetes; OC Articulavirales; Orthomyxoviridae; Alphainfluenzavirus. XX RN [1] RP 1-1752 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT "Influenza Sequencing Activity group"; RL Unpublished. XX RN [2] RP 1-1752 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT ; RL Submitted (09-MAR-2020) to the INSDC. RL WHO Collaborating Center for Surveillance, Epidemiology and Control of RL Influenza, Influenza Division, Centers for Disease Control and Prevention, RL 1600 Clifton Road, N.E., Atlanta, GA 30333, USA XX DR MD5; b25b7554a96a3f7ff7229a14a080ee08. XX CC ##FluData-START## CC EPI_ISOLATE_ID :: EPI_ISL_409129 CC NAME :: A/Delaware/02/2020 CC TYPE :: H1N1 CC Segment_name :: HA CC HOST_AGE :: 68 CC HOST_GENDER :: F CC PASSAGE :: Original CC LOCATION :: United States / Delaware CC COLLECT_DATE :: 03-Jan-2020 CC Lineage :: A(H1N1)pdm09 CC RESIST_TO_OSELTAMIVIR :: Sensitive CC RESIST_TO_ZANAMVIR :: Sensitive CC SPECIMEN_ID :: F916622 ORIGINAL CC SENDER_LAB :: Delaware Public Health Lab CC SEQLAB_SAMPLE_ID :: 3026054542 CC EPI_SEQUENCE_ID :: EPI1683908 CC ##FluData-END## XX FH Key Location/Qualifiers FH FT source 1..1752 FT /organism="Influenza A virus" FT /segment="4" FT /host="Homo sapiens" FT /strain="A/Delaware/02/2020" FT /serotype="H1N1" FT /mol_type="viral cRNA" FT /country="USA:Delaware" FT /collection_date="03-Jan-2020" FT /db_xref="taxon:11320" FT gene 21..1721 FT /gene="HA" FT CDS 21..1721 FT /codon_start=1 FT /gene="HA" FT /product="hemagglutinin" FT /function="receptor binding and fusion protein" FT /protein_id="QIJ23554.1" FT /translation="MKAILVVLLYTFTTANADTLCIGYHANNSTDTVDTVLEKNVTVTH FT SVNLLEDKHNGKLCKLKGVAPLHLGKCNIAGWILGNPECESLSTERSWSYIVETSNSDN FT GTCYPGDFINYEELREQLSSVSSFERFEIFPKISSWPNHDSDKGVTAACPHAGAKSFYK FT NLIWLVKKGNSYPKLNQTYINDKGKEVLVLWGIHHPPTIAAQESLYQNADAYVFVGTSR FT YSKKFKPEIATRPKVRDQEGRMNYYWTLVEPGDKITFEATGNLVVPRYAFTMERDAGSG FT IIISDTPVHDCNTTCQTPEGAINTSLPFQNVHPITIGKCPKYVKSTKLRLATGLRNVPS FT IQSRGLFGAIAGFIEGGWTGMVDGWYGYHHQNEQGSGYAADLKSTQNAIDKITNKVNSV FT IEKMNTQFTAVGKEFNHLEKRIENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSN FT VKNLYEKVRNQLKNNAKEIGNGCFEFYHKCDNTCMESVKNGTYDYPKYSEEAKLNREKI FT DGVKLESTRIYQILAIYSTVASSLVLVVSLGAISFWMCSNGSLQCRICI" FT sig_peptide 21..71 FT /gene="HA" FT mat_peptide 72..1052 FT /gene="HA" FT /product="HA1" FT mat_peptide 1053..1718 FT /gene="HA" FT /product="HA2" XX SQ Sequence 1752 BP; 632 A; 324 C; 384 G; 412 T; 0 other; ggaaaacaaa agcaacaaaa atgaaggcaa tactagtagt tctgctgtat acatttacaa 60 ccgcaaatgc agacacatta tgtataggtt atcatgcgaa caattcaaca gacactgtag 120 acacagtact agaaaagaat gtaacagtaa cacactctgt caatcttctg gaagacaagc 180 ataacggaaa actatgcaaa ctaaaagggg tagccccatt gcatttgggt aaatgtaaca 240 ttgctggctg gatcctggga aatccagagt gtgaatcact ctccacagaa agatcatggt 300 cctacattgt ggaaacatct aattcagaca atggaacgtg ttacccagga gatttcatca 360 attatgagga gctaagagag caattgagct cagtgtcatc atttgaaagg tttgaaatat 420 tccccaagat aagttcatgg cctaatcatg actcggacaa aggtgtaacg gcagcatgtc 480 ctcacgctgg agcaaaaagc ttctacaaaa acttgatatg gctggttaaa aaaggaaatt 540 catacccaaa gctcaaccaa acctacatta atgataaagg gaaagaagtc ctcgtgctgt 600 ggggcattca ccatccacct actattgctg cccaagaaag tctctatcag aatgcagatg 660 catatgtttt tgtggggaca tcaagataca gcaagaagtt caagccggaa atagcaacaa 720 gacccaaagt gagggatcaa gaagggagaa tgaactatta ctggacacta gtagaaccgg 780 gagacaaaat aacattcgaa gcaactggaa atctagtggt accgagatat gcattcacaa 840 tggaaagaga tgctggatct ggtattatca tttcagatac accagtccac gattgcaata 900 caacttgtca gacacccgag ggtgctataa acaccagcct accatttcag aatgtacatc 960 cgattacaat tgggaaatgt ccaaagtatg taaaaagcac aaaattgaga ctggccacag 1020 gattgaggaa tgtcccgtct attcaatcta gaggcctatt cggggccatt gctggcttca 1080 ttgaaggggg gtggacaggg atggtagatg gatggtacgg ttatcaccat caaaatgagc 1140 aggggtcagg atatgcagcc gatctgaaga gcacacaaaa tgccattgat aagattacta 1200 acaaagtaaa ttctgttatt gaaaagatga atacacagtt cacagcagtg ggtaaagagt 1260 tcaaccacct tgaaaaaaga atagagaatc taaataaaaa agttgatgat ggtttcctgg 1320 acatttggac ttacaatgcc gaactgttgg ttctactgga aaacgaaaga actttggact 1380 atcacgattc aaatgtgaag aacttgtatg aaaaagtaag aaaccagtta aaaaacaatg 1440 ccaaggaaat tggaaacggc tgctttgaat tttaccacaa atgcgacaac acatgcatgg 1500 aaagtgtcaa gaatgggact tatgactacc caaaatactc agaggaagca aaattaaaca 1560 gagaaaaaat agatggagta aagctggaat caacaaggat ctaccagatt ttggcgatct 1620 attcaactgt tgccagttca ttggtactgg tagtctccct gggggcaatc agcttctgga 1680 tgtgctctaa tgggtctcta cagtgtagaa tatgtattta acattaggat ttcagaatca 1740 tgagaaaaac ac 1752 // ID MT167102; SV 1; linear; viral cRNA; STD; VRL; 1540 BP. XX AC MT167102; XX PR Project:PRJNA37813; XX DT 17-MAR-2020 (Rel. 144, Created) DT 17-MAR-2020 (Rel. 144, Last updated, Version 1) XX DE Influenza A virus (A/Delaware/02/2020(H1N1)) segment 5 nucleocapsid protein DE (NP) gene, complete cds. XX KW . XX OS Influenza A virus OC Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Insthoviricetes; OC Articulavirales; Orthomyxoviridae; Alphainfluenzavirus. XX RN [1] RP 1-1540 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT "Influenza Sequencing Activity group"; RL Unpublished. XX RN [2] RP 1-1540 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT ; RL Submitted (09-MAR-2020) to the INSDC. RL WHO Collaborating Center for Surveillance, Epidemiology and Control of RL Influenza, Influenza Division, Centers for Disease Control and Prevention, RL 1600 Clifton Road, N.E., Atlanta, GA 30333, USA XX DR MD5; 68a6f3f5c9754771571cceb9f21735b8. XX CC ##FluData-START## CC EPI_ISOLATE_ID :: EPI_ISL_409129 CC NAME :: A/Delaware/02/2020 CC TYPE :: H1N1 CC Segment_name :: NP CC HOST_AGE :: 68 CC HOST_GENDER :: F CC PASSAGE :: Original CC LOCATION :: United States / Delaware CC COLLECT_DATE :: 03-Jan-2020 CC Lineage :: A(H1N1)pdm09 CC RESIST_TO_OSELTAMIVIR :: Sensitive CC RESIST_TO_ZANAMVIR :: Sensitive CC SPECIMEN_ID :: F916622 ORIGINAL CC SENDER_LAB :: Delaware Public Health Lab CC SEQLAB_SAMPLE_ID :: 3026054542 CC EPI_SEQUENCE_ID :: EPI1683895 CC ##FluData-END## XX FH Key Location/Qualifiers FH FT source 1..1540 FT /organism="Influenza A virus" FT /segment="5" FT /host="Homo sapiens" FT /strain="A/Delaware/02/2020" FT /serotype="H1N1" FT /mol_type="viral cRNA" FT /country="USA:Delaware" FT /collection_date="03-Jan-2020" FT /db_xref="taxon:11320" FT gene 34..1530 FT /gene="NP" FT CDS 34..1530 FT /codon_start=1 FT /gene="NP" FT /product="nucleocapsid protein" FT /protein_id="QIJ23555.1" FT /translation="MASQGTKRSYEQMETGGERQDTTEIRASVGRMIGGIGRFYIQMCT FT ELKLSDYDGRLIQNSITIERMVLSSFDERRNKYLEEHPSAGKDPKKTGGPIYRRIDGKW FT TRELILYDKEEIRRVWRQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRM FT CSLMQGSTLPRRSGAAGAAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTRVAYERM FT CNILKGKFQTAAQRAMMDQVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVY FT GLAVASGHDFEREGYSLVGIDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFED FT LRVSSFIRGKKVIPRGKLSTRGVQIASNENVETMDSNTLELRSRYWAIRTRSGGNTNQQ FT KASAGQISVQPTFSVQRNLPFERATIMAAFSGNNEGRTSDMRTEIIRMMESAKPEDLSF FT QGRGVFELSDEKATNPIVPSFDMSNEGSYFFGDNAEEYDN" XX SQ Sequence 1540 BP; 528 A; 296 C; 390 G; 326 T; 0 other; gtagataatc actcaatgag tgacatcgaa gccatggcgt ctcaaggcac caaacgatca 60 tatgaacaaa tggagactgg tggggagcgc caggatacca cagaaatcag agcatctgtt 120 ggaagaatga ttggtggaat cgggagattc tacatccaaa tgtgcactga actaaaactc 180 agtgattatg atggacgact gatccagaac agcataacaa tagagaggat ggtgctttct 240 tcttttgatg agagaagaaa taaataccta gaagagcatc caagtgctgg gaaggaccct 300 aagaaaacag gaggacccat ctatagaaga atagacggaa aatggacaag agaactcatc 360 ctttatgaca aagaagaaat aagaagagtt tggcgccaag caaacaatgg cgaagatgca 420 acagcaggtc ttactcatat catgatttgg cattccaatc tgaatgatgc cacatatcag 480 aggacaagag cacttgttcg cactggaatg gatcccagaa tgtgctctct aatgcaaggt 540 tcaacacttc ccagaaggtc tggtgccgca ggtgctgcag taaaaggagt tggaacaata 600 gctatggagt taatcagaat gataaaacgt ggaatcaatg accgaaattt ctggaggggt 660 gaaaatggaa gaaggacaag agttgcttat gaaagaatgt gcaatatcct caaaggaaaa 720 tttcaaacag ctgcccagag ggcaatgatg gatcaagtaa gagaaagtcg aaacccagga 780 aacgctgaga ttgaagacct cattttcctg gcacggtcag cactcattct gagaggatca 840 gttgcacata aatcctgcct gcctgcttgt gtgtatgggc ttgcagtagc aagtggccat 900 gactttgaaa gggaagggta ctcactggtc gggatagacc cattcaaatt actccaaaac 960 agtcaagtgg tcagcctgat gagaccaaat gaaaatccag ctcacaagag tcaattggta 1020 tggatggcat gccactctgc tgcatttgaa gatttaagag tatcaagttt cataagagga 1080 aagaaagtga tcccaagagg aaagctttcc acaagagggg ttcagattgc ttcaaatgag 1140 aatgtggaaa ccatggactc caataccctg gaactaagaa gcagatactg ggccataaga 1200 accagaagtg gaggaaatac caatcaacag aaggcatctg caggccagat cagtgtgcag 1260 cctacattct cagtgcagcg aaatctccct tttgaaagag caaccattat ggcagcattc 1320 agcgggaaca atgaaggacg gacatccgac atgcgaacag aaattataag aatgatggaa 1380 agtgcaaagc cagaggattt gtccttccag gggcggggag tcttcgagct ctcggacgaa 1440 aaggcaacga acccgatcgt gccttccttt gacatgagta atgaagggtc ttatttcttc 1500 ggagacaatg cagaggagta tgacaattga agaaaaatac 1540 // ID MT167103; SV 1; linear; viral cRNA; STD; VRL; 1434 BP. XX AC MT167103; XX PR Project:PRJNA37813; XX DT 17-MAR-2020 (Rel. 144, Created) DT 17-MAR-2020 (Rel. 144, Last updated, Version 1) XX DE Influenza A virus (A/Delaware/02/2020(H1N1)) segment 6 neuraminidase (NA) DE gene, complete cds. XX KW . XX OS Influenza A virus OC Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Insthoviricetes; OC Articulavirales; Orthomyxoviridae; Alphainfluenzavirus. XX RN [1] RP 1-1434 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT "Influenza Sequencing Activity group"; RL Unpublished. XX RN [2] RP 1-1434 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT ; RL Submitted (09-MAR-2020) to the INSDC. RL WHO Collaborating Center for Surveillance, Epidemiology and Control of RL Influenza, Influenza Division, Centers for Disease Control and Prevention, RL 1600 Clifton Road, N.E., Atlanta, GA 30333, USA XX DR MD5; a650f18e6f305451ab2145732c304f2b. XX CC ##FluData-START## CC EPI_ISOLATE_ID :: EPI_ISL_409129 CC NAME :: A/Delaware/02/2020 CC TYPE :: H1N1 CC Segment_name :: NA CC HOST_AGE :: 68 CC HOST_GENDER :: F CC PASSAGE :: Original CC LOCATION :: United States / Delaware CC COLLECT_DATE :: 03-Jan-2020 CC Lineage :: A(H1N1)pdm09 CC RESIST_TO_OSELTAMIVIR :: Sensitive CC RESIST_TO_ZANAMVIR :: Sensitive CC SPECIMEN_ID :: F916622 ORIGINAL CC SENDER_LAB :: Delaware Public Health Lab CC SEQLAB_SAMPLE_ID :: 3026054542 CC EPI_SEQUENCE_ID :: EPI1683905 CC ##FluData-END## XX FH Key Location/Qualifiers FH FT source 1..1434 FT /organism="Influenza A virus" FT /segment="6" FT /host="Homo sapiens" FT /strain="A/Delaware/02/2020" FT /serotype="H1N1" FT /mol_type="viral cRNA" FT /country="USA:Delaware" FT /collection_date="03-Jan-2020" FT /db_xref="taxon:11320" FT gene 9..1418 FT /gene="NA" FT CDS 9..1418 FT /codon_start=1 FT /gene="NA" FT /product="neuraminidase" FT /protein_id="QIJ23556.1" FT /translation="MNPNQKIITIGSICMTIGMANLILQIGNIISIWVSHSIQIGNQSQ FT IETCNKNVITYENNTWVNQTYVNISNTNSAARQSVASVKLAGNSSLCPVSGWAIYSKDN FT SVRIGSKGDVFVIREPFISCSPLECRTFFLTQGALLNDKHSNGTIKDRSPYRTLMSCPI FT GEVPSPYNSRFESVAWSASACHDGTNWLTIGISGPDSGAVAVLKYNGIITDTIKSWRNN FT ILRTQESECACVNGSCFTIMTDGPSDGQASYKIFRIEKGKIIKSVEMKAPNYHYEECSC FT YPDSSEITCVCRDNWHGSNRPWVSFNQNLEYQMGYICSGVFGDNPRPNDKTGSCGPVSS FT NGANGVKGFSFKYGNGVWIGRTKSISSRKGFEMIWDPNGWTGTDNKFSKKQDIVGINEW FT SGYSGSFVQHPELTGLNCIRPCFWVELIRGRPEENTIWTSGSSISFCGVDSDIVGWSWP FT DGAELPFTIDK" XX SQ Sequence 1434 BP; 465 A; 263 C; 333 G; 373 T; 0 other; agtttgaaat gaatccaaac caaaagataa taaccattgg ctctatctgt atgacaattg 60 gaatggctaa cttaatatta caaattggaa acataatctc aatatgggtt agccactcaa 120 ttcaaattgg aaatcaaagc cagattgaaa catgcaataa aaacgtcatt acttatgaaa 180 acaatacttg ggtaaatcag acatatgtta acatcagcaa caccaactct gctgctagac 240 agtcagtggc ttccgtgaaa ttagcgggca attcctctct ctgccctgtc agtggatggg 300 ctatatacag taaagacaac agtgtaagaa tcggttccaa gggggatgtg tttgtcataa 360 gggaaccatt catatcatgc tctcccttgg aatgcagaac cttcttcttg actcaagggg 420 ctttgctaaa tgacaaacat tccaatggaa ccattaaaga cagaagccca tatcgaaccc 480 taatgagctg tcctattggt gaagttccct ctccatacaa ctcaagattt gagtcagtcg 540 cttggtcagc aagtgcttgt catgatggca ccaattggct aacaattgga atttctggcc 600 cagacagtgg ggcagtggct gtgttaaaat acaatggcat aataacagac actatcaaga 660 gttggaggaa caatatattg agaacacaag agtctgaatg tgcatgtgta aatggttctt 720 gctttaccat aatgaccgat ggaccaagtg atggacaggc ctcatacaaa atcttcagaa 780 tagaaaaggg aaagataatc aaatcagtcg aaatgaaagc ccctaattat cactatgagg 840 aatgctcctg ttaccctgat tctagtgaaa tcacatgtgt gtgcagggat aactggcatg 900 gctcgaatcg accgtgggtg tctttcaacc agaatctgga ataccagatg ggatacatat 960 gcagtggggt tttcggagac aatccacgcc ctaatgataa gacaggcagt tgtggtccag 1020 tatcgtctaa tggagcaaat ggggtaaaag gattttcatt caaatacggc aatggtgttt 1080 ggatagggag aactaagagc attagttcaa gaaaaggttt tgagatgatt tgggatccga 1140 atggatggac tgggactgac aataaattct caaaaaagca agatatcgta ggaataaatg 1200 agtggtcagg gtatagcggg agttttgttc agcatccaga actaacaggg ctgaattgta 1260 taagaccttg cttctgggtt gaactaataa gaggacgacc cgaagagaac acaatctgga 1320 ctagcgggag cagcatatcc ttttgtggtg tagacagtga cattgtgggt tggtcttggc 1380 cagacggtgc tgagttgcca tttaccattg acaagtaatt tgttcaaaaa aact 1434 // ID MT167104; SV 1; linear; viral cRNA; STD; VRL; 1002 BP. XX AC MT167104; XX PR Project:PRJNA37813; XX DT 17-MAR-2020 (Rel. 144, Created) DT 17-MAR-2020 (Rel. 144, Last updated, Version 1) XX DE Influenza A virus (A/Delaware/02/2020(H1N1)) segment 7 matrix protein 2 DE (M2) and matrix protein 1 (M1) genes, complete cds. XX KW . XX OS Influenza A virus OC Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Insthoviricetes; OC Articulavirales; Orthomyxoviridae; Alphainfluenzavirus. XX RN [1] RP 1-1002 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT "Influenza Sequencing Activity group"; RL Unpublished. XX RN [2] RP 1-1002 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT ; RL Submitted (09-MAR-2020) to the INSDC. RL WHO Collaborating Center for Surveillance, Epidemiology and Control of RL Influenza, Influenza Division, Centers for Disease Control and Prevention, RL 1600 Clifton Road, N.E., Atlanta, GA 30333, USA XX DR MD5; 450785b1294558cce6ba4fa395c2af82. XX CC ##FluData-START## CC EPI_ISOLATE_ID :: EPI_ISL_409129 CC NAME :: A/Delaware/02/2020 CC TYPE :: H1N1 CC Segment_name :: M CC HOST_AGE :: 68 CC HOST_GENDER :: F CC PASSAGE :: Original CC LOCATION :: United States / Delaware CC COLLECT_DATE :: 03-Jan-2020 CC Lineage :: A(H1N1)pdm09 CC RESIST_TO_OSELTAMIVIR :: Sensitive CC RESIST_TO_ZANAMVIR :: Sensitive CC SPECIMEN_ID :: F916622 ORIGINAL CC SENDER_LAB :: Delaware Public Health Lab CC SEQLAB_SAMPLE_ID :: 3026054542 CC EPI_SEQUENCE_ID :: EPI1683899 CC ##FluData-END## XX FH Key Location/Qualifiers FH FT source 1..1002 FT /organism="Influenza A virus" FT /segment="7" FT /host="Homo sapiens" FT /strain="A/Delaware/02/2020" FT /serotype="H1N1" FT /mol_type="viral cRNA" FT /country="USA:Delaware" FT /collection_date="03-Jan-2020" FT /db_xref="taxon:11320" FT gene 14..995 FT /gene="M2" FT CDS join(14..39,728..995) FT /codon_start=1 FT /gene="M2" FT /product="matrix protein 2" FT /protein_id="QIJ23558.1" FT /translation="MSLLTEVETPTRSEWECRCSGSNDPLVIAANIIGILHLILWITDR FT LFFKCIYRRFKYGLKRGPSTEGVPDSMREEYQQEQQSAVDVDDGHFVNIELE" FT gene 14..772 FT /gene="M1" FT CDS 14..772 FT /codon_start=1 FT /gene="M1" FT /product="matrix protein 1" FT /protein_id="QIJ23557.1" FT /translation="MSLLTEVETYVLSIIPSGPLKAEIAQRLESVFAGKNTDLEALMEW FT LKTRPILSPLTKGILGFVFTLTVPSERGLQRRRFIQNALNGNGDPNNMDRAVKLYKKLK FT REITFHGAKEVSLSYSTGALASCMGLIYNRMGTVTTEAAFGLVCATCEQIADSQHRSHR FT QMATTTNPLIRHENRMVLASTTAKAMEQVAGSSEQAAEAMEVANKTRQMVHAMRTIGTH FT PSSSAGLRDDLLENLQAYQKRMGVQMQRFK" XX SQ Sequence 1002 BP; 301 A; 209 C; 252 G; 240 T; 0 other; tagatgttta aagatgagtc ttctaaccga ggtcgaaacg tacgttcttt ctatcatccc 60 gtcaggcccc ctcaaagccg agatcgcaca gagactggaa agtgtctttg caggaaagaa 120 cacagatctt gaggctctca tggaatggct aaagacaaga ccaatcttgt cacctctgac 180 taagggaatt ttaggatttg tgttcacgct caccgtgccc agtgagcgag gactgcagcg 240 tagacgcttt atccaaaatg ccctaaatgg aaatggggac ccgaacaaca tggatagagc 300 agttaaacta tacaagaaac tcaaaagaga aataacgttc catggggcca aggaggtgtc 360 actaagctat tcaactggtg cacttgcaag ttgcatgggc ctcatataca acaggatggg 420 aacagtgacc acagaagctg ctttcggtct agtttgtgcc acttgtgaac agattgctga 480 ttcacagcat cggtctcaca gacaaatggc tactaccaca aatccactaa tcaggcatga 540 aaacagaatg gtgctggcta gcactacggc aaaggctatg gaacaggtgg ctggatcgag 600 tgaacaggca gcggaggcca tggaggttgc taataagact aggcagatgg tacatgcaat 660 gagaactatt ggaactcatc ctagctccag tgctggtcta agagatgacc ttcttgaaaa 720 tttgcaggcc taccagaagc gaatgggagt gcagatgcag cggttcaaat gatcctctcg 780 tcattgcagc aaacatcatt gggatcttgc acctgatatt gtggattact gatcgtcttt 840 ttttcaaatg catttatcgt cgctttaaat acggtttgaa aagagggcct tctacggaag 900 gagtgcctga ttccatgagg gaagaatatc aacaggagca gcagagtgct gtggatgttg 960 acgatggtca ttttgtcaac atagagctag agtaaaaaac ta 1002 // ID MT167105; SV 1; linear; viral cRNA; STD; VRL; 865 BP. XX AC MT167105; XX PR Project:PRJNA37813; XX DT 17-MAR-2020 (Rel. 144, Created) DT 17-MAR-2020 (Rel. 144, Last updated, Version 1) XX DE Influenza A virus (A/Delaware/02/2020(H1N1)) segment 8 nuclear export DE protein (NEP) and nonstructural protein 1 (NS1) genes, complete cds. XX KW . XX OS Influenza A virus OC Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Insthoviricetes; OC Articulavirales; Orthomyxoviridae; Alphainfluenzavirus. XX RN [1] RP 1-865 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT "Influenza Sequencing Activity group"; RL Unpublished. XX RN [2] RP 1-865 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT ; RL Submitted (09-MAR-2020) to the INSDC. RL WHO Collaborating Center for Surveillance, Epidemiology and Control of RL Influenza, Influenza Division, Centers for Disease Control and Prevention, RL 1600 Clifton Road, N.E., Atlanta, GA 30333, USA XX DR MD5; d41980445a9e43f917c23efd3f06efcb. XX CC ##FluData-START## CC EPI_ISOLATE_ID :: EPI_ISL_409129 CC NAME :: A/Delaware/02/2020 CC TYPE :: H1N1 CC Segment_name :: NS CC HOST_AGE :: 68 CC HOST_GENDER :: F CC PASSAGE :: Original CC LOCATION :: United States / Delaware CC COLLECT_DATE :: 03-Jan-2020 CC Lineage :: A(H1N1)pdm09 CC RESIST_TO_OSELTAMIVIR :: Sensitive CC RESIST_TO_ZANAMVIR :: Sensitive CC SPECIMEN_ID :: F916622 ORIGINAL CC SENDER_LAB :: Delaware Public Health Lab CC SEQLAB_SAMPLE_ID :: 3026054542 CC EPI_SEQUENCE_ID :: EPI1683897 CC ##FluData-END## XX FH Key Location/Qualifiers FH FT source 1..865 FT /organism="Influenza A virus" FT /segment="8" FT /host="Homo sapiens" FT /strain="A/Delaware/02/2020" FT /serotype="H1N1" FT /mol_type="viral cRNA" FT /country="USA:Delaware" FT /collection_date="03-Jan-2020" FT /db_xref="taxon:11320" FT gene 15..852 FT /gene="NEP" FT /gene_synonym="NS2" FT CDS join(15..44,517..852) FT /codon_start=1 FT /gene="NEP" FT /gene_synonym="NS2" FT /product="nuclear export protein" FT /note="nonstructural protein 2" FT /protein_id="QIJ23560.1" FT /translation="MESNTMSSFQDILMRMSKMQLGSSSEDLSGMVTRFESLKIYRDSL FT GEAVMRMGDLHYLQSRNEKWREQLGQKFEEIRWLIEEIRHRLKATENSFEQITFMQALQ FT LLLEVEQEIRAFSFQLI" FT gene 15..674 FT /gene="NS1" FT CDS 15..674 FT /codon_start=1 FT /gene="NS1" FT /product="nonstructural protein 1" FT /protein_id="QIJ23559.1" FT /translation="MESNTMSSFQVDCFLWHIRKRFADNGLGDAPFLDRLRRDQKSLKG FT RGNTLGLDIKTATLVGKQIVEWILKEESSETLRMAIASVPTSRYISDMTLEEMSRDWFM FT LMPRQKIIGPLCVRLDQAVMDKNIVLEANFSVIFNRLETLILLRAFTEEGTIVGEISPL FT PSLPGHTYEDVKNAVGVLIGGLEWNGNTVRVSENIQRFAWRSCDENGRPSLPPEQK" XX SQ Sequence 865 BP; 280 A; 165 C; 205 G; 215 T; 0 other; gtgacaaaaa cataatggaa tccaacacca tgtcaagctt tcaggtagac tgttttcttt 60 ggcatattcg caagcgattt gcagacaatg gattgggtga tgccccattc cttgatcggc 120 tacgccgaga tcaaaagtcc ttaaaaggaa gaggcaacac ccttggcctc gacatcaaaa 180 cagccactct tgttgggaaa caaattgtgg aatggatttt gaaagaggaa tccagcgaga 240 cacttagaat ggcaattgca tctgtaccta cttcgcgtta catttctgac atgaccctcg 300 aggaaatgtc acgagactgg ttcatgctta tgcctaggca aaagataata ggccctcttt 360 gcgtgcgatt ggaccaggcg gtcatggata agaacatagt actggaagca aacttcagtg 420 taatcttcaa ccgattagag accttgatac tactaagggc tttcactgag gagggaacaa 480 tagttggaga aatttcacca ttaccttctc ttccaggaca tacttatgag gatgtcaaaa 540 atgcagttgg ggtcctcatc ggaggacttg agtggaatgg taacacggtt cgagtctctg 600 aaaatataca gagattcgct tggagaagct gtgatgagaa tgggagacct tcactacctc 660 cagagcagaa atgagaagtg gcgggaacaa ttgggacaga aatttgagga aataaggtgg 720 ttaattgaag aaatacgaca cagattgaaa gcgacagaga atagtttcga acaaataaca 780 tttatgcaag ccttacaact actgcttgaa gtagagcaag agataagagc tttctcgttt 840 cagcttattt aatgataaaa aacac 865 // ID MT167106; SV 1; linear; viral cRNA; STD; VRL; 2316 BP. XX AC MT167106; XX PR Project:PRJNA37813; XX DT 17-MAR-2020 (Rel. 144, Created) DT 17-MAR-2020 (Rel. 144, Last updated, Version 1) XX DE Influenza A virus (A/Georgia/48/2019(H1N1)) segment 1 polymerase PB2 (PB2) DE gene, complete cds. XX KW . XX OS Influenza A virus OC Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Insthoviricetes; OC Articulavirales; Orthomyxoviridae; Alphainfluenzavirus. XX RN [1] RP 1-2316 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT "Influenza Sequencing Activity group"; RL Unpublished. XX RN [2] RP 1-2316 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT ; RL Submitted (09-MAR-2020) to the INSDC. RL WHO Collaborating Center for Surveillance, Epidemiology and Control of RL Influenza, Influenza Division, Centers for Disease Control and Prevention, RL 1600 Clifton Road, N.E., Atlanta, GA 30333, USA XX DR MD5; d869d87ed82d6223b6e066e5921c4884. XX CC ##FluData-START## CC EPI_ISOLATE_ID :: EPI_ISL_409229 CC NAME :: A/Georgia/48/2019 CC TYPE :: H1N1 CC Segment_name :: PB2 CC HOST_AGE :: 30 CC PASSAGE :: Original CC LOCATION :: United States / Georgia CC COLLECT_DATE :: 29-Dec-2019 CC Lineage :: A(H1N1)pdm09 CC SPECIMEN_ID :: 20B0043669 ORIGINAL CC SENDER_LAB :: Georgia Public Health Laboratory CC SEQLAB_SAMPLE_ID :: 3026054731 CC EPI_SEQUENCE_ID :: EPI1684670 CC ##FluData-END## XX FH Key Location/Qualifiers FH FT source 1..2316 FT /organism="Influenza A virus" FT /segment="1" FT /host="Homo sapiens" FT /strain="A/Georgia/48/2019" FT /serotype="H1N1" FT /mol_type="viral cRNA" FT /country="USA:Georgia" FT /collection_date="29-Dec-2019" FT /db_xref="taxon:11320" FT gene 16..2295 FT /gene="PB2" FT CDS 16..2295 FT /codon_start=1 FT /gene="PB2" FT /product="polymerase PB2" FT /protein_id="QIJ23561.1" FT /translation="MERIKELRDLMSQSRTREILTKTTVDHMAIIKKYTSGRQEKNPAL FT RMKWMMAMKYPITADKRIMDIIPERNEQGQTLWSKTNDAGSDRVMVSPLAVTWWNRNGP FT TTSTVHYPKVYKTYFEKVERLKHGTFGPVHFRNQVKIRRRVDTNPGHADLSAKEAQDVI FT MEVVFPNEVGARILTSESQLAITKEKKEELQNCKIAPLMVAYMLERELVRKTRFLPVAG FT GTGSVYIEVLHLTQGTCWEQMYTPGGEVRNDDVDQSLIIAARNIVRRAAVSADPLASLL FT EMCHSTQIGGVKMVDILKQNPTEEQAVDICKAAIGLRISSSFSFGGFTFKRTSGSSVKK FT EEEMLTGNLQTLKLRVHEGYEEFTMVGRRATAILRKATRRLIQLIVSGRDEQSIAEAII FT VAMVFSQEDCMIKAVRGDLNFVNRANQRLNPMHQLLRHFQKDAKVLFQNWGIETIDNVM FT GMIGILPDMTPSTEMSLRGIRVSKMGVDEYSSTERVVVSIDRFLRVRDQRGNVLLSPEE FT VSETQGTEKLTITYSSSMMWEINGPESVLVNTYQWIIRNWEIVKIQWSQDPTMLYNKME FT FEPFQSLVPKATRSRYSGFVRTLFQQMRDVLGTFDTVQIIKLLPFAAAPPEQSRMQFSS FT LTVNVRGSGLRILVRGNSPVFNYNKATKRLTVLGKDAGALTEDPDEGTSGVESAVLRGF FT LILGKEDKRYGPALSINELSNLAKGEKANVLIGQGDIVLVMKRKRDSSILTDSQTATKR FT IRMAIN" XX SQ Sequence 2316 BP; 794 A; 440 C; 583 G; 499 T; 0 other; tcaaatatat tcaatatgga gagaataaaa gagctgagag atctaatgtc acagtcccgc 60 actcgcgaga tactcactaa gaccactgtg gaccatatgg ccatcatcaa aaagtacaca 120 tcgggaaggc aagagaagaa ccccgcactc agaatgaagt ggatgatggc aatgaaatac 180 ccaattacgg cagacaagag aataatggac ataatcccag agaggaatga acaaggacaa 240 accctctgga gcaaaacaaa cgatgctgga tcagaccgag tgatggtatc acctctggcc 300 gtaacatggt ggaatagaaa tggcccaaca acaagtacag ttcattaccc taaggtatat 360 aaaacttatt tcgaaaaggt cgaaaggttg aaacatggca ccttcggccc tgtccacttc 420 agaaatcaag tcaaaataag gaggagagtt gatacaaacc ctggccatgc agatctcagt 480 gccaaagaag cacaggatgt gattatggaa gttgttttcc caaatgaagt gggggcaaga 540 atactgacat cagagtcaca gctggcaata acaaaagaga agaaagaaga gctccagaat 600 tgtaaaattg ctcccttgat ggtggcgtac atgctagaaa gagaattggt ccgtaaaaca 660 aggtttctcc cggtagccgg tgggacaggc agtgtttata ttgaggtgtt acacttgacc 720 caagggacgt gctgggagca gatgtacact ccaggaggag aagtgagaaa tgatgatgtt 780 gaccaaagct tgattatcgc tgctagaaac atagtaagaa gagcagcagt gtcagcagac 840 ccattagcat ctctcttgga aatgtgccac agcacacaga ttggaggtgt gaagatggtg 900 gacatcctta aacagaatcc aactgaggag caagccgtag acatatgcaa ggcagcaata 960 gggttgagga tcagctcatc ttttagtttt ggtgggttca ctttcaaaag gacaagcgga 1020 tcatcagtca agaaagaaga agaaatgcta acgggcaacc tccaaacact gaaattaaga 1080 gtacatgaag ggtatgaaga attcacaatg gttgggagaa gagcaacagc tattctcaga 1140 aaggcaacca ggagattgat ccaattaata gtaagcggga gagacgagca gtcaatagct 1200 gaagcaataa ttgtggccat ggtattctca caagaggatt gcatgatcaa agcagttagg 1260 ggcgatctga actttgtcaa tagggcaaac cagagactga atcccatgca ccaactcttg 1320 aggcatttcc aaaaagatgc aaaagtgctt ttccagaact ggggaattga aaccatcgac 1380 aatgtgatgg gaatgatcgg aatactgccc gacatgaccc caagcacgga gatgtcactg 1440 agaggaataa gagtcagcaa gatgggagta gatgaatact ccagcacgga gagagtggta 1500 gtgagtattg accgattttt gagggttaga gatcaaagag gaaacgtact attgtctccc 1560 gaagaggtca gtgaaacgca aggaactgag aagttgacaa taacttattc gtcatcaatg 1620 atgtgggaga taaacggccc tgagtcagtg ctagtcaaca cttatcaatg gataatcaga 1680 aactgggaaa ttgtgaaaat tcaatggtca caagacccca caatgttata caacaaaatg 1740 gaatttgaac catttcagtc tcttgtccct aaggcaacca gaagccggta cagtggattc 1800 gtaaggacac tgttccagca aatgagggat gtgcttggga catttgacac tgtccaaata 1860 ataaaacttc tcccctttgc tgctgctcca cccgaacaga gcaggatgca attttcttca 1920 ttgactgtga atgtgagagg atcagggtta aggatactgg taagaggcaa ttctccagta 1980 ttcaattaca acaaggcaac caaacgactt acggttcttg gaaaggatgc aggtgcattg 2040 actgaagatc cagatgaagg cacatctggg gtggagtctg ctgtcctgag aggattcctc 2100 attttaggca aagaagacaa gagatatggc ccagcattaa gcatcaatga actgagcaat 2160 cttgcaaaag gagagaaagc taatgtgcta attgggcagg gggacatagt gttggtaatg 2220 aaacgaaaac gggactctag catacttact gacagccaga cagcgaccaa aagaattcgg 2280 atggccatca attagtgtcg aattgtttaa aaacga 2316 // ID MT167107; SV 1; linear; viral cRNA; STD; VRL; 2208 BP. XX AC MT167107; XX PR Project:PRJNA37813; XX DT 17-MAR-2020 (Rel. 144, Created) DT 17-MAR-2020 (Rel. 144, Last updated, Version 1) XX DE Influenza A virus (A/Georgia/48/2019(H1N1)) segment 3 polymerase PA (PA) DE and PA-X protein (PA-X) genes, complete cds. XX KW . XX OS Influenza A virus OC Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Insthoviricetes; OC Articulavirales; Orthomyxoviridae; Alphainfluenzavirus. XX RN [1] RP 1-2208 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT "Influenza Sequencing Activity group"; RL Unpublished. XX RN [2] RP 1-2208 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT ; RL Submitted (09-MAR-2020) to the INSDC. RL WHO Collaborating Center for Surveillance, Epidemiology and Control of RL Influenza, Influenza Division, Centers for Disease Control and Prevention, RL 1600 Clifton Road, N.E., Atlanta, GA 30333, USA XX DR MD5; 014802dc7010af6d806876e71c8f4931. XX CC ##FluData-START## CC EPI_ISOLATE_ID :: EPI_ISL_409229 CC NAME :: A/Georgia/48/2019 CC TYPE :: H1N1 CC Segment_name :: PA CC HOST_AGE :: 30 CC PASSAGE :: Original CC LOCATION :: United States / Georgia CC COLLECT_DATE :: 29-Dec-2019 CC Lineage :: A(H1N1)pdm09 CC SPECIMEN_ID :: 20B0043669 ORIGINAL CC SENDER_LAB :: Georgia Public Health Laboratory CC SEQLAB_SAMPLE_ID :: 3026054731 CC EPI_SEQUENCE_ID :: EPI1684669 CC ##FluData-END## XX FH Key Location/Qualifiers FH FT source 1..2208 FT /organism="Influenza A virus" FT /segment="3" FT /host="Homo sapiens" FT /strain="A/Georgia/48/2019" FT /serotype="H1N1" FT /mol_type="viral cRNA" FT /country="USA:Georgia" FT /collection_date="29-Dec-2019" FT /db_xref="taxon:11320" FT gene 13..2163 FT /gene="PA" FT CDS 13..2163 FT /codon_start=1 FT /gene="PA" FT /product="polymerase PA" FT /protein_id="QIJ23562.1" FT /translation="MEDFVRQCFNPMVVELAEKAMKEYGEDPKIETNKFAAICTHLEVC FT FMYSDFHFIDERGESIIVESGDPNALLKHRFEIIEGRDRIMAWTVVNSICNTTGIEKPK FT FLPDLYDYKENRFIEIGVTRREVHIYYLEKANKIKSEKTHIHIFSFTGEEMATKADYTL FT DEESRARIKTRLFTIRQEMASRSLWDSFRQSERGEETIEEKFEITGTMRKLADQSLPPN FT FSSLENFRAYVDGFEPNGCIEGKLSQMSKEVNAKIEPFLRTTPRPLRLPDGPLCHQRSK FT FLLMDALKLSIEDPSHEGEGIPLYDAIKCMKTFFGWKEPKIVKPHEKGVNPNYLMAWKQ FT VLAELQDIENEEKIPRTKNMKKTSQLKWALGENMAPEKVDFDDCKDVGDLKQYDSDEPE FT LRSLASWVQNEFNKACELTDSSWIELDEIGEDVAPIEYIASMRRNYFTAEVSHCRATEY FT IMKGVYINTALLNASCAAMDDFQLIPMISKCRTKEGRRKTNLYGFIIKGRSHLRNDTDV FT VNFVSMEFSLTDPRLEPHKWEKYCVLEIGDMLLRTAIGQVSRPMFLYVRTNGTSKIKMK FT WGMEMRRCLLQSLQQIESMIEAESSVKEKDMTKEFFENKSETWPIGESPRGVEEGSIGK FT VCRTLLAKSVFNSLYASPQLEGFSAESRKLLLIVQALRDNLEPGTFDLGGLYEAIEECL FT INDPWVLLNASWFNSFLTHALK" FT gene 13..712 FT /gene="PA-X" FT CDS join(13..582,584..712) FT /codon_start=1 FT /ribosomal_slippage FT /gene="PA-X" FT /product="PA-X protein" FT /protein_id="QIJ23563.1" FT /translation="MEDFVRQCFNPMVVELAEKAMKEYGEDPKIETNKFAAICTHLEVC FT FMYSDFHFIDERGESIIVESGDPNALLKHRFEIIEGRDRIMAWTVVNSICNTTGIEKPK FT FLPDLYDYKENRFIEIGVTRREVHIYYLEKANKIKSEKTHIHIFSFTGEEMATKADYTL FT DEESRARIKTRLFTIRQEMASRSLWDSFVSPKEAKKQLKKSLRLRELCASLPTKVSHQT FT SPALKTSEPM" XX SQ Sequence 2208 BP; 744 A; 423 C; 516 G; 525 T; 0 other; tactgatcca aaatggaaga ctttgttcga caatgcttca atccaatggt cgtcgagctt 60 gcggaaaagg caatgaaaga atatggggaa gaccccaaaa tcgaaactaa taaatttgct 120 gcaatttgca cacatttgga agtttgtttc atgtattcgg atttccattt cattgatgaa 180 cggggtgaat caataattgt agaatctggt gacccaaatg cactattgaa gcaccgattt 240 gagataattg aaggaagaga ccgaatcatg gcctggacag tggtgaacag tatatgtaac 300 acaacaggga tagagaagcc taaatttctt cctgatttgt atgattacaa agagaaccgg 360 ttcattgaaa ttggagtaac acggagagaa gtccacatat attacctaga gaaagccaac 420 aaaataaaat ctgagaagac acacattcac atcttttcat tcactggaga ggagatggcc 480 accaaagcgg actacaccct tgacgaagag agcagagcaa gaatcaaaac taggcttttc 540 actataagac aagaaatggc cagtaggagt ctatgggatt cctttcgtca gtccgaaaga 600 ggcgaagaaa caattgaaga aaagtttgag attacgggaa ctatgcgcaa gcttgccgac 660 caaagtctcc caccaaactt ctccagcctt gaaaacttca gagcctatgt agatggattc 720 gagccgaacg gctgcattga gggcaagctt tcccaaatgt caaaagaagt gaacgccaaa 780 attgaaccat tcttgaggac gacaccacgc cccctcagat tacctgatgg acctctttgc 840 catcagcggt caaaattcct gctgatggat gctctgaaat taagcattga agacccgagt 900 cacgaggggg aaggaatacc actatatgat gcaatcaaat gcatgaagac attctttggc 960 tggaaagagc ctaaaatagt caaaccacat gagaaaggcg taaatcccaa ttacctcatg 1020 gcttggaagc aggtgctagc agagctacag gacattgaaa atgaagagaa aatcccaaga 1080 acaaagaaca tgaagaaaac aagccaattg aagtgggcac tcggtgaaaa tatggcacca 1140 gaaaaagtgg actttgatga ctgtaaagat gttggagacc ttaaacagta tgacagtgat 1200 gagccagagc tcagatctct agcaagctgg gtccaaaatg aattcaataa ggcatgtgaa 1260 ttgactgatt caagctggat agaacttgat gaaataggag aagatgttgc cccgattgaa 1320 tatatagcaa gcatgaggag gaactatttt acagcagaag tgtcccactg cagggctact 1380 gaatacataa tgaagggagt gtacataaat acggccttgc tcaatgcatc ctgtgcagcc 1440 atggatgact ttcagctgat tccaatgata agcaaatgta ggaccaaaga aggaagacgg 1500 aaaacaaacc tgtatgggtt cattataaaa ggaaggtctc atttgagaaa tgatactgat 1560 gtagtgaatt ttgtaagtat ggagttctca ctcactgatc caagactgga accacacaaa 1620 tgggaaaaat actgtgttct tgaaatagga gacatgctat tgaggactgc aataggccaa 1680 gtgtcgaggc ccatgttcct atatgtgaga accaatggaa cctccaagat caagatgaaa 1740 tggggcatgg aaatgaggcg ctgccttctt caatctcttc agcagattga gagcatgatt 1800 gaagccgagt cttctgtcaa agagaaagac atgaccaagg aattctttga aaacaaatcg 1860 gaaacatggc caatcggaga gtcacccagg ggagtggagg aaggctctat tggaaaagtg 1920 tgcagaacct tactggcaaa atctgtgttc aacagtctat atgcttctcc acaacttgag 1980 gggttttcgg ctgaatcaag aaaattgctt ctcattgttc aggcacttag ggacaacctg 2040 gaacctggaa cctttgatct tggggggcta tatgaagcaa tcgaggagtg cttgattaat 2100 gatccctggg ttttgcttaa tgcatcttgg ttcaactcct tcctcacaca tgcactgaag 2160 tagttgtagc aatgctacta tttgctatcc atattgtcca aaaaagta 2208 // ID MT167108; SV 1; linear; viral cRNA; STD; VRL; 1752 BP. XX AC MT167108; XX PR Project:PRJNA37813; XX DT 17-MAR-2020 (Rel. 144, Created) DT 17-MAR-2020 (Rel. 144, Last updated, Version 1) XX DE Influenza A virus (A/Georgia/48/2019(H1N1)) segment 4 hemagglutinin (HA) DE gene, complete cds. XX KW . XX OS Influenza A virus OC Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Insthoviricetes; OC Articulavirales; Orthomyxoviridae; Alphainfluenzavirus. XX RN [1] RP 1-1752 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT "Influenza Sequencing Activity group"; RL Unpublished. XX RN [2] RP 1-1752 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT ; RL Submitted (09-MAR-2020) to the INSDC. RL WHO Collaborating Center for Surveillance, Epidemiology and Control of RL Influenza, Influenza Division, Centers for Disease Control and Prevention, RL 1600 Clifton Road, N.E., Atlanta, GA 30333, USA XX DR MD5; d714554f8aed6b462cf9a7e93bffc04c. XX CC ##FluData-START## CC EPI_ISOLATE_ID :: EPI_ISL_409229 CC NAME :: A/Georgia/48/2019 CC TYPE :: H1N1 CC Segment_name :: HA CC HOST_AGE :: 30 CC PASSAGE :: Original CC LOCATION :: United States / Georgia CC COLLECT_DATE :: 29-Dec-2019 CC Lineage :: A(H1N1)pdm09 CC SPECIMEN_ID :: 20B0043669 ORIGINAL CC SENDER_LAB :: Georgia Public Health Laboratory CC SEQLAB_SAMPLE_ID :: 3026054731 CC EPI_SEQUENCE_ID :: EPI1684672 CC ##FluData-END## XX FH Key Location/Qualifiers FH FT source 1..1752 FT /organism="Influenza A virus" FT /segment="4" FT /host="Homo sapiens" FT /strain="A/Georgia/48/2019" FT /serotype="H1N1" FT /mol_type="viral cRNA" FT /country="USA:Georgia" FT /collection_date="29-Dec-2019" FT /db_xref="taxon:11320" FT gene 21..1721 FT /gene="HA" FT CDS 21..1721 FT /codon_start=1 FT /gene="HA" FT /product="hemagglutinin" FT /function="receptor binding and fusion protein" FT /protein_id="QIJ23564.1" FT /translation="MKAILVVLLYTFTTANADTLCIGYHANNSTDTVDTVLEKNVTVTH FT SVNLLEDKHNGKLCKLRGVAPLHLGKCNIAGWILGNPECDSLSTARSWSYIVETSNSDN FT GTCYPGDFINYEELREQLSSVSSFERFEIFPKANSWPNHDSNKGVTAACPHAGAKSFYK FT NLIWLVKKGNSYPKINQTYINDKGKEVLVLWGIHHPPTTADQQSLYQNADAYVFVGTSR FT YSKKFKPEIATRPKVRDQEGRMNYYWTLVEPGDKITFEATGNLVVPRYAFTMERNAGSG FT IIISDTPVHDCNTTCQTPEGAINTSLPFQNVHPITIGTCPKYVKSTKLRLATGLRNVPS FT IQSRGLFGAIAGFIEGGWTGMVDGWYGYHHQNEQGSGYAADLKSTQNAIDKITNKVNSV FT IEKMNTQFTAVGKEFNHLEKRMENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSN FT VKNLYEKVRNQLKNNAKEIGNGCFEFYHKCDNTCMESVKNGTYDYPKYSEEAKLSREKI FT DGVKLDSTRIYQILAIYSTVASSLVLVVSLGAISFWMCSNGSLQCRICI" FT sig_peptide 21..71 FT /gene="HA" FT mat_peptide 72..1052 FT /gene="HA" FT /product="HA1" FT mat_peptide 1053..1718 FT /gene="HA" FT /product="HA2" XX SQ Sequence 1752 BP; 630 A; 331 C; 381 G; 410 T; 0 other; ggaaaacaaa agcaacaaaa atgaaggcaa tactagtagt tctgctgtat acatttacaa 60 ccgcaaacgc agacacatta tgtataggtt atcatgcgaa caattcaaca gacactgtag 120 atacagtact agaaaagaat gtaacagtaa cacactctgt taatcttctg gaagacaagc 180 ataacggaaa actatgcaaa ctaagagggg tagccccatt gcatttgggt aaatgcaaca 240 ttgctggctg gatcctggga aatccagagt gtgactcact ctccacagca agatcatggt 300 cctacattgt ggaaacgtct aattcagaca atggaacatg ttacccagga gatttcatca 360 attatgagga gctaagagag caattgagct cagtgtcatc atttgaaagg tttgaaatat 420 tccccaaggc aaattcatgg cctaatcatg actcgaacaa aggtgtaacg gcagcatgtc 480 ctcacgctgg agcaaaaagc ttctacaaaa acttgatatg gctggttaaa aaaggaaatt 540 catacccaaa gatcaaccaa acctacatta atgataaagg gaaagaagtc ctcgtgctgt 600 ggggcattca ccatccacct actactgctg accaacaaag tctctatcag aatgcagatg 660 catatgtttt tgtggggaca tcaagataca gcaagaagtt caagccagaa atagcaacaa 720 gacccaaagt gagggatcaa gaagggagaa tgaactatta ctggacacta gtagagccgg 780 gagacaaaat aacattcgaa gcaactggaa atctagtggt accgagatat gcattcacaa 840 tggaaagaaa tgctggatct ggtattatca tttcagatac accagtccac gactgcaata 900 caacttgtca gacccccgag ggtgctataa acaccagtct cccatttcag aatgtacatc 960 cgatcacaat tgggacatgt ccaaagtatg taaaaagcac aaaattgaga ctggccacag 1020 gattgaggaa tgtcccgtct attcaatcta gaggcctatt cggggccatt gccggcttca 1080 ttgaaggggg gtggacaggg atggtagatg gatggtatgg ttatcaccat caaaatgaac 1140 aggggtcagg atatgcagcc gatctgaaga gcacacaaaa tgccattgat aagattacta 1200 acaaagtaaa ttctgttatt gaaaagatga atacacagtt cacagcagtg ggtaaagagt 1260 tcaaccacct tgaaaaaaga atggaaaatc taaataaaaa agttgatgat ggtttcctgg 1320 acatttggac ttacaatgcc gaactgttgg ttctactgga aaatgaaaga actttggact 1380 atcacgattc aaatgtgaag aacttgtatg aaaaagtaag aaaccagtta aaaaacaatg 1440 ccaaagaaat tggaaatggc tgctttgaat tttaccacaa atgcgataac acatgcatgg 1500 aaagtgtcaa gaatgggact tatgactacc caaaatactc agaggaagca aaactaagca 1560 gagaaaaaat agatggagta aagctggact caacaaggat ctaccagatt ttggcgatct 1620 attcaactgt cgccagttca ttggtactgg tagtctccct gggggcaatc agcttctgga 1680 tgtgctctaa tgggtctcta cagtgtagaa tatgtattta acattaggat ttcagaatca 1740 tgagaaaaac ac 1752 // ID MT167109; SV 1; linear; viral cRNA; STD; VRL; 1540 BP. XX AC MT167109; XX PR Project:PRJNA37813; XX DT 17-MAR-2020 (Rel. 144, Created) DT 17-MAR-2020 (Rel. 144, Last updated, Version 1) XX DE Influenza A virus (A/Georgia/48/2019(H1N1)) segment 5 nucleocapsid protein DE (NP) gene, complete cds. XX KW . XX OS Influenza A virus OC Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Insthoviricetes; OC Articulavirales; Orthomyxoviridae; Alphainfluenzavirus. XX RN [1] RP 1-1540 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT "Influenza Sequencing Activity group"; RL Unpublished. XX RN [2] RP 1-1540 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT ; RL Submitted (09-MAR-2020) to the INSDC. RL WHO Collaborating Center for Surveillance, Epidemiology and Control of RL Influenza, Influenza Division, Centers for Disease Control and Prevention, RL 1600 Clifton Road, N.E., Atlanta, GA 30333, USA XX DR MD5; c99b1013e79ba72250e7f1c8a97d48d5. XX CC ##FluData-START## CC EPI_ISOLATE_ID :: EPI_ISL_409229 CC NAME :: A/Georgia/48/2019 CC TYPE :: H1N1 CC Segment_name :: NP CC HOST_AGE :: 30 CC PASSAGE :: Original CC LOCATION :: United States / Georgia CC COLLECT_DATE :: 29-Dec-2019 CC Lineage :: A(H1N1)pdm09 CC SPECIMEN_ID :: 20B0043669 ORIGINAL CC SENDER_LAB :: Georgia Public Health Laboratory CC SEQLAB_SAMPLE_ID :: 3026054731 CC EPI_SEQUENCE_ID :: EPI1684666 CC ##FluData-END## XX FH Key Location/Qualifiers FH FT source 1..1540 FT /organism="Influenza A virus" FT /segment="5" FT /host="Homo sapiens" FT /strain="A/Georgia/48/2019" FT /serotype="H1N1" FT /mol_type="viral cRNA" FT /country="USA:Georgia" FT /collection_date="29-Dec-2019" FT /db_xref="taxon:11320" FT gene 34..1530 FT /gene="NP" FT CDS 34..1530 FT /codon_start=1 FT /gene="NP" FT /product="nucleocapsid protein" FT /protein_id="QIJ23565.1" FT /translation="MASQGTKRSYEQMETGGERQDTTEIRASVGRMIGGIGRFYIQMCT FT ELKLSDYDGRLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRIDGKW FT TRELILYDKEEIRRVWRQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRM FT CSLMQGSTLPRRSGAAGAAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTRVAYERM FT CNILKGKFQTAAQRAMMDQVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVY FT GLAVASGHDFEREGYSLVGIDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFED FT LRVSSFIRGKKVIPRGKLSTRGVQIASNENVETMDSNTLELRSRYWAIRTRSGGNTNQQ FT KASAGQISVQPTFSVQRNLPFERATVMAAFSGNNEGRTSDMRTEVIRMMESAKPEDLSF FT QGRGVFELSDEKATNPIVPSFDMSNEGSYFFGDNAEEYDN" XX SQ Sequence 1540 BP; 523 A; 296 C; 397 G; 324 T; 0 other; gtagataatc actcaatgag tgacatcgaa gccatggcgt ctcaaggcac caaacgatca 60 tatgaacaaa tggagactgg tggggagcgc caggatacca cagaaatcag agcatctgtt 120 ggaagaatga ttggtggaat cgggagattc tacatccaaa tgtgcactga attaaaactc 180 agtgattatg atggacgact aatccagaat agcataacaa tagagaggat ggtgctttct 240 gcttttgatg agagaagaaa taaataccta gaagagcatc cgagtgctgg gaaggaccct 300 aagaaaacag gaggacccat ctatagaaga atagacggaa aatggacgag agaactcatc 360 ctttatgaca aagaagaaat aaggagagtt tggcgccaag caaacaatgg cgaagatgca 420 acagcaggtc ttactcatat catgatttgg cattccaatc tgaatgatgc cacataccaa 480 aggacaagag cacttgttcg cactggaatg gatcccagaa tgtgctctct aatgcaaggt 540 tcaacacttc ccaggaggtc tggtgccgca ggtgctgcag taaaaggagt gggaacaata 600 gctatggagt taatcagaat gataaaacgt ggaatcaatg accgaaattt ctggaggggt 660 gaaaatggac gaaggacaag agttgcttat gaaagaatgt gcaatatcct caaaggaaaa 720 tttcaaacag ctgcccagag ggcaatgatg gatcaagtaa gagaaagtcg aaacccagga 780 aacgcagaga ttgaagacct cattttcctg gcacggtcag cactcattct gagaggatca 840 gttgcacata aatcctgtct gcctgcttgt gtgtatgggc ttgcagtagc aagtggccat 900 gactttgaaa gggaagggta ctcactggtc gggatagacc cattcaaatt actccaaaac 960 agtcaagtgg tcagtctgat gagaccaaat gaaaatccag ctcacaagag tcaattggta 1020 tggatggcat gccactctgc tgcatttgaa gatttaagag tatcaagttt cataagagga 1080 aagaaagtga tcccaagagg aaagctttcc acaagagggg ttcagattgc ttcaaatgag 1140 aatgtggaaa ccatggactc caataccctg gaactaagaa gcagatactg ggccataaga 1200 accaggagtg gaggaaatac caatcaacag aaggcatccg caggccagat cagtgtgcag 1260 cctacattct cagtgcagcg aaatctccct ttcgaaagag caaccgttat ggcagcattc 1320 agcgggaaca atgaaggacg gacatccgac atgcgaacag aagttataag aatgatggaa 1380 agtgcaaagc cagaggattt gtccttccag gggcggggag tcttcgagct ctcggacgaa 1440 aaggcaacga acccgatcgt gccttccttt gacatgagta atgaagggtc ttatttcttc 1500 ggagacaatg cagaggagta tgacaattga agaaaaatac 1540 // ID MT167110; SV 1; linear; viral cRNA; STD; VRL; 1433 BP. XX AC MT167110; XX PR Project:PRJNA37813; XX DT 17-MAR-2020 (Rel. 144, Created) DT 17-MAR-2020 (Rel. 144, Last updated, Version 1) XX DE Influenza A virus (A/Georgia/48/2019(H1N1)) segment 6 neuraminidase (NA) DE gene, complete cds. XX KW . XX OS Influenza A virus OC Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Insthoviricetes; OC Articulavirales; Orthomyxoviridae; Alphainfluenzavirus. XX RN [1] RP 1-1433 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT "Influenza Sequencing Activity group"; RL Unpublished. XX RN [2] RP 1-1433 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT ; RL Submitted (09-MAR-2020) to the INSDC. RL WHO Collaborating Center for Surveillance, Epidemiology and Control of RL Influenza, Influenza Division, Centers for Disease Control and Prevention, RL 1600 Clifton Road, N.E., Atlanta, GA 30333, USA XX DR MD5; a30bb0cb8a3407a12e3f7af8c2305d06. XX CC ##FluData-START## CC EPI_ISOLATE_ID :: EPI_ISL_409229 CC NAME :: A/Georgia/48/2019 CC TYPE :: H1N1 CC Segment_name :: NA CC HOST_AGE :: 30 CC PASSAGE :: Original CC LOCATION :: United States / Georgia CC COLLECT_DATE :: 29-Dec-2019 CC Lineage :: A(H1N1)pdm09 CC SPECIMEN_ID :: 20B0043669 ORIGINAL CC SENDER_LAB :: Georgia Public Health Laboratory CC SEQLAB_SAMPLE_ID :: 3026054731 CC EPI_SEQUENCE_ID :: EPI1684671 CC ##FluData-END## XX FH Key Location/Qualifiers FH FT source 1..1433 FT /organism="Influenza A virus" FT /segment="6" FT /host="Homo sapiens" FT /strain="A/Georgia/48/2019" FT /serotype="H1N1" FT /mol_type="viral cRNA" FT /country="USA:Georgia" FT /collection_date="29-Dec-2019" FT /db_xref="taxon:11320" FT gene 9..1418 FT /gene="NA" FT CDS 9..1418 FT /codon_start=1 FT /gene="NA" FT /product="neuraminidase" FT /protein_id="QIJ23566.1" FT /translation="MNPNQKIITIGSICMTIGMANLILQIGNIISIWVSHSIQIGNQSQ FT IETCNQSVITYENNTWVNQTYVNISNTNFAARQSVASVKLAGNSSLCPVSGWAIYSKDN FT SVRIGSKGDVFVIREPFISCSPLECRTFFLTQGALLNDKHSNGTIKDRSPYRTLMSCPI FT GEVPSPYNSRFESVAWSASACHDGINWLTIGISGPDSGAVAVLKYNGIITDTIKSWRNN FT ILRTQESECACVNGSCFTIMTDGPSDGQASYKIFRIEKGKIIKSVEMKAPNYHYEECSC FT YPDSSEITCVCRDNWHGSNRPWVSFNQNLEYQIGYICSGVLGDNPRPNDKTGSCGPVSS FT NGANGVKGFSFKYGNGVWIGRTKSISSRKGFEMIWDPNGWTGTDNKFSIKQDIVGINEW FT SGYSGSFVQHPELTGLDCIRPCFWVELIRGRPEENTIWTSGSSISFCGVDSDTVGWSWP FT DGAELPFTIDK" XX SQ Sequence 1433 BP; 457 A; 265 C; 338 G; 373 T; 0 other; agtttaaaat gaatccaaac caaaagataa taaccattgg ttcgatctgt atgacaattg 60 gaatggctaa cttaatatta caaattggaa acataatctc aatatgggtt agccactcaa 120 ttcaaattgg aaatcaaagc cagattgaaa catgcaatca aagcgtcatc acttatgaga 180 acaacacttg ggtaaatcag acgtatgtta acatcagcaa caccaacttt gctgctagac 240 agtcagtggc ttccgtgaaa ttagcgggca attcctctct ctgccctgtt agtggatggg 300 ctatatacag taaagacaac agtgtaagaa tcggctccaa gggggatgtg tttgtcataa 360 gggaaccatt catatcatgc tctcccttgg aatgcagaac cttcttcttg actcaagggg 420 ctttgctaaa tgacaaacat tccaatggaa ccattaaaga caggagccca tatcgaaccc 480 taatgagctg tcctattggt gaagttccct ctccatacaa ctcaagattt gagtcagtcg 540 cttggtcagc aagtgcttgt catgatggca tcaattggct aacaattgga atttctggcc 600 cagacagtgg ggcagtggct gtgttaaaat acaatggcat aataacagac actatcaaga 660 gttggaggaa caatatattg agaacacaag agtctgaatg tgcatgtgta aatggttctt 720 gctttaccat aatgaccgat ggaccaagtg atggacaggc ctcatacaaa atcttcagaa 780 tagaaaaggg aaagataatc aaatcagttg aaatgaaagc ccctaattat cactatgagg 840 aatgctcctg ttaccctgat tctagtgaaa tcacctgtgt gtgcagggat aactggcatg 900 gctcgaatcg accgtgggtg tctttcaacc agaatctgga atatcagata ggatacatat 960 gcagtggggt tctcggagac aatccacgcc ctaatgataa gacaggcagt tgcggtccag 1020 tatcgtctaa tggagcaaat ggagtgaaag gattttcatt caaatacggc aatggtgttt 1080 ggatagggag aactaagagc attagttcaa ggaaaggttt tgagatgatt tgggatccga 1140 atggatggac tgggactgac aataaattct caataaagca agatatcgta ggaataaatg 1200 agtggtcagg gtatagcggg agttttgttc agcatccaga actaacaggg ctggattgta 1260 taagaccttg cttctgggtt gaactaataa gaggacgacc cgaagagaac acaatctgga 1320 ctagcgggag cagcatatcc ttttgtggtg tagacagtga cactgtgggt tggtcttggc 1380 cagacggtgc tgagttgcca tttaccattg acaagtaatt tgttcaaaaa act 1433 // ID MT167111; SV 1; linear; viral cRNA; STD; VRL; 1002 BP. XX AC MT167111; XX PR Project:PRJNA37813; XX DT 17-MAR-2020 (Rel. 144, Created) DT 17-MAR-2020 (Rel. 144, Last updated, Version 1) XX DE Influenza A virus (A/Georgia/48/2019(H1N1)) segment 7 matrix protein 2 (M2) DE and matrix protein 1 (M1) genes, complete cds. XX KW . XX OS Influenza A virus OC Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Insthoviricetes; OC Articulavirales; Orthomyxoviridae; Alphainfluenzavirus. XX RN [1] RP 1-1002 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT "Influenza Sequencing Activity group"; RL Unpublished. XX RN [2] RP 1-1002 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT ; RL Submitted (09-MAR-2020) to the INSDC. RL WHO Collaborating Center for Surveillance, Epidemiology and Control of RL Influenza, Influenza Division, Centers for Disease Control and Prevention, RL 1600 Clifton Road, N.E., Atlanta, GA 30333, USA XX DR MD5; 93db5a9059418d5b0cf4b5f7bc2924a6. XX CC ##FluData-START## CC EPI_ISOLATE_ID :: EPI_ISL_409229 CC NAME :: A/Georgia/48/2019 CC TYPE :: H1N1 CC Segment_name :: M CC HOST_AGE :: 30 CC PASSAGE :: Original CC LOCATION :: United States / Georgia CC COLLECT_DATE :: 29-Dec-2019 CC Lineage :: A(H1N1)pdm09 CC SPECIMEN_ID :: 20B0043669 ORIGINAL CC SENDER_LAB :: Georgia Public Health Laboratory CC SEQLAB_SAMPLE_ID :: 3026054731 CC EPI_SEQUENCE_ID :: EPI1684668 CC ##FluData-END## XX FH Key Location/Qualifiers FH FT source 1..1002 FT /organism="Influenza A virus" FT /segment="7" FT /host="Homo sapiens" FT /strain="A/Georgia/48/2019" FT /serotype="H1N1" FT /mol_type="viral cRNA" FT /country="USA:Georgia" FT /collection_date="29-Dec-2019" FT /db_xref="taxon:11320" FT gene 14..995 FT /gene="M2" FT CDS join(14..39,728..995) FT /codon_start=1 FT /gene="M2" FT /product="matrix protein 2" FT /protein_id="QIJ23568.1" FT /translation="MSLLTEVETPTRSGWECRCSGSSDPLVIAANIIGILHLILWITDR FT LFFKCIYRRFKYGLKRGPSTEGVPESMREEYQQEQQNAVDVDDGHFVNIELE" FT gene 14..772 FT /gene="M1" FT CDS 14..772 FT /codon_start=1 FT /gene="M1" FT /product="matrix protein 1" FT /protein_id="QIJ23567.1" FT /translation="MSLLTEVETYVLSIIPSGPLKAEIAQRLESVFAGKNTDLEALMEW FT LKTRPILSPLTKGILGFVFTLTVPSERGLQRRRFIQNALNGNGDPNNMDRAVKIYKKLK FT REITFHGAKEVSLSYSTGALASCMGLIYNRMGTVTTEAAFGLVCATCEQIADSQHRSHR FT QMATTTNPLIRHENRMVLASTTAKAMEQVAGSSEQAAEAMEVANKTRQMVHAMRTIGTH FT PSSSAGLRDDLLENLQAYQKRMGVQMQRFK" XX SQ Sequence 1002 BP; 299 A; 208 C; 257 G; 238 T; 0 other; tagatgttta aagatgagtc ttctaaccga ggtcgaaacg tacgttcttt ctatcatccc 60 atcaggcccc ctcaaagccg agatcgcaca gagactggaa agtgtctttg caggaaagaa 120 cacagatctt gaggctctca tggaatggct aaagacaaga ccaatcttgt cacctctgac 180 taagggaatt ttaggatttg tgttcacgct caccgtgccc agtgagcgag gactgcagcg 240 tagacgcttt atccaaaatg ccctaaatgg aaatggggac ccgaacaaca tggatagagc 300 agttaaaata tacaagaagc tcaaaagaga aataacgttc catggggcca aggaggtgtc 360 attaagctat tcaactggtg cacttgcaag ttgcatgggc ctcatataca acaggatggg 420 aacagtgacc acagaagctg ctttcggtct agtttgtgcc acttgtgaac agattgctga 480 ttcacagcat cggtctcaca gacaaatggc tactaccaca aatccactaa tcaggcatga 540 aaacagaatg gtgctggcta gcactacggc aaaggctatg gaacaggtgg caggatcgag 600 tgaacaggca gcggaggcca tggaggttgc taataagact aggcagatgg tgcatgcaat 660 gagaactatt gggactcatc ctagctccag tgctggtctg agagatgacc ttcttgaaaa 720 tttgcaggcc taccagaagc ggatgggagt gcagatgcag cggttcaagt gatcctctcg 780 tcattgcagc aaacatcatt gggatcttgc acctgatatt gtggattact gatcgtcttt 840 ttttcaaatg catttatcgt cgctttaaat acggtctgaa aagagggcct tctacggaag 900 gagtgcctga gtccatgagg gaagaatatc aacaggagca gcagaatgct gtggatgttg 960 acgatggtca ttttgtcaac atagagctag agtaaaaaac ta 1002 // ID MT167112; SV 1; linear; viral cRNA; STD; VRL; 865 BP. XX AC MT167112; XX PR Project:PRJNA37813; XX DT 17-MAR-2020 (Rel. 144, Created) DT 17-MAR-2020 (Rel. 144, Last updated, Version 1) XX DE Influenza A virus (A/Georgia/48/2019(H1N1)) segment 8 nuclear export DE protein (NEP) and nonstructural protein 1 (NS1) genes, complete cds. XX KW . XX OS Influenza A virus OC Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Insthoviricetes; OC Articulavirales; Orthomyxoviridae; Alphainfluenzavirus. XX RN [1] RP 1-865 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT "Influenza Sequencing Activity group"; RL Unpublished. XX RN [2] RP 1-865 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT ; RL Submitted (09-MAR-2020) to the INSDC. RL WHO Collaborating Center for Surveillance, Epidemiology and Control of RL Influenza, Influenza Division, Centers for Disease Control and Prevention, RL 1600 Clifton Road, N.E., Atlanta, GA 30333, USA XX DR MD5; c8ae95aa03115c00d4b587ea0428ec60. XX CC ##FluData-START## CC EPI_ISOLATE_ID :: EPI_ISL_409229 CC NAME :: A/Georgia/48/2019 CC TYPE :: H1N1 CC Segment_name :: NS CC HOST_AGE :: 30 CC PASSAGE :: Original CC LOCATION :: United States / Georgia CC COLLECT_DATE :: 29-Dec-2019 CC Lineage :: A(H1N1)pdm09 CC SPECIMEN_ID :: 20B0043669 ORIGINAL CC SENDER_LAB :: Georgia Public Health Laboratory CC SEQLAB_SAMPLE_ID :: 3026054731 CC EPI_SEQUENCE_ID :: EPI1684667 CC ##FluData-END## XX FH Key Location/Qualifiers FH FT source 1..865 FT /organism="Influenza A virus" FT /segment="8" FT /host="Homo sapiens" FT /strain="A/Georgia/48/2019" FT /serotype="H1N1" FT /mol_type="viral cRNA" FT /country="USA:Georgia" FT /collection_date="29-Dec-2019" FT /db_xref="taxon:11320" FT gene 15..852 FT /gene="NEP" FT /gene_synonym="NS2" FT CDS join(15..44,517..852) FT /codon_start=1 FT /gene="NEP" FT /gene_synonym="NS2" FT /product="nuclear export protein" FT /note="nonstructural protein 2" FT /protein_id="QIJ23570.1" FT /translation="MESNTMSSFQDILMRMSKMQLGSSSEDLSGMVTRFESLKIYRDSL FT GEAVMRMGDLHYLQSRNEKWREQLGQKFEEIRWLIEEIRHRLKTTENSFEQITFMQALQ FT LLLEVEQEIRAFSFQLI" FT gene 15..674 FT /gene="NS1" FT CDS 15..674 FT /codon_start=1 FT /gene="NS1" FT /product="nonstructural protein 1" FT /protein_id="QIJ23569.1" FT /translation="MESNTMSSFQVDCFLWHIRKRFADNGLGDAPFLDRLRRDQKSLKG FT RGNTLGLDVKTATLVGKQIVEWILKEESSETLRMTIASVPTSRYISDMTLEEMSRDWFM FT LMPRQKMIGPLCVRLDQAVMDKNIVLEANFSVIFNRLETLILLRAFTEEGAIVGEISPL FT PSLPGHTYEDVKNAVGVLIGGLEWNGNTVRVSENIQRFAWRSCDENGRPSLPPEQK" XX SQ Sequence 865 BP; 276 A; 164 C; 208 G; 217 T; 0 other; gtgacaaaaa cataatggaa tccaacacca tgtcaagctt tcaggtagat tgttttcttt 60 ggcatattcg caagcgattt gcagacaatg gattgggtga tgccccattc cttgatcggc 120 tacgccgaga tcaaaagtcc ttaaaaggaa gaggcaacac ccttggcctc gacgtcaaaa 180 cagccactct tgttgggaaa caaattgtgg aatggatttt gaaagaggaa tccagcgaga 240 cacttagaat gacaattgca tctgtaccta cttcgcgtta catttctgac atgaccctcg 300 aggaaatgtc acgagactgg ttcatgctta tgcctaggca aaagatgata ggccctcttt 360 gcgtgcgatt ggaccaggcg gtcatggata agaacatagt actggaagca aacttcagtg 420 taatcttcaa ccgattagag accttgatac tactaagggc tttcactgag gagggagcaa 480 tagttggaga aatttcacca ttaccttctc ttccaggaca tacttatgag gatgtcaaaa 540 atgcagttgg ggtcctcatc ggaggacttg agtggaatgg taacacggtt cgagtctctg 600 aaaatataca gagattcgct tggagaagct gtgatgagaa tgggagacct tcactacctc 660 cagagcagaa atgagaagtg gcgggaacaa ttgggacaga aatttgagga aataaggtgg 720 ttgattgaag aaatacgaca taggttgaaa acgacagaga atagtttcga acaaataacc 780 tttatgcaag ccttacaact actgcttgaa gtagagcaag agataagagc tttctcgttt 840 cagcttattt aatgataaaa aacac 865 // ID MT167113; SV 1; linear; viral cRNA; STD; VRL; 2316 BP. XX AC MT167113; XX PR Project:PRJNA37813; XX DT 17-MAR-2020 (Rel. 144, Created) DT 17-MAR-2020 (Rel. 144, Last updated, Version 1) XX DE Influenza A virus (A/Georgia/45/2019(H1N1)) segment 1 polymerase PB2 (PB2) DE gene, complete cds. XX KW . XX OS Influenza A virus OC Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Insthoviricetes; OC Articulavirales; Orthomyxoviridae; Alphainfluenzavirus. XX RN [1] RP 1-2316 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT "Influenza Sequencing Activity group"; RL Unpublished. XX RN [2] RP 1-2316 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT ; RL Submitted (09-MAR-2020) to the INSDC. RL WHO Collaborating Center for Surveillance, Epidemiology and Control of RL Influenza, Influenza Division, Centers for Disease Control and Prevention, RL 1600 Clifton Road, N.E., Atlanta, GA 30333, USA XX DR MD5; 45a8ea9e88b1d513640dae32f3561aff. XX CC ##FluData-START## CC EPI_ISOLATE_ID :: EPI_ISL_409126 CC NAME :: A/Georgia/45/2019 CC TYPE :: H1N1 CC Segment_name :: PB2 CC HOST_AGE :: 46 CC PASSAGE :: Original CC LOCATION :: United States / Georgia CC COLLECT_DATE :: 15-Nov-2019 CC Lineage :: A(H1N1)pdm09 CC SPECIMEN_ID :: 20B0033761 ORIGINAL CC SENDER_LAB :: Georgia Public Health Laboratory CC SEQLAB_SAMPLE_ID :: 3026054754 CC EPI_SEQUENCE_ID :: EPI1683875 CC ##FluData-END## XX FH Key Location/Qualifiers FH FT source 1..2316 FT /organism="Influenza A virus" FT /segment="1" FT /host="Homo sapiens" FT /strain="A/Georgia/45/2019" FT /serotype="H1N1" FT /mol_type="viral cRNA" FT /country="USA:Georgia" FT /collection_date="15-Nov-2019" FT /db_xref="taxon:11320" FT gene 16..2295 FT /gene="PB2" FT CDS 16..2295 FT /codon_start=1 FT /gene="PB2" FT /product="polymerase PB2" FT /protein_id="QIJ23571.1" FT /translation="MERIKELRDLMSQSRTREILTKTTVDHMAIIKKYTSGRQEKNPAL FT RMKWMMAMKYPITADKRIMDIIPERNEQGQTLWSKTNDAGSDRVMVSPLAVTWWNRNGP FT TTSTVHYPKVYKTYFEKVERLKHGTFGPVHFRNQVKIRRRVDTNPGHADLSAKEAQDVI FT MEVVFPNEVGARILTSESQLAITKEKKEELQNCKIAPLMVAYMLERELVRKTRFLPVAG FT GTGSVYIEVLHLTQGTCWEQMYTPGGEVRNDDVDQSLIIAARNIVRRAAVSADPLASLL FT EMCHSTQIGGVKMVDILKQNPTEEQAVDICKAAIGLRISSSFSFGGFTFKRTSGSSIKK FT EEEMLTGNLQTLKLRVHEGYEEFTMVGRRATAILRKATRRLIQLIVSGRDEQSIAEAII FT VAMVFSQEDCMIKAVRGDLNFVNRANQRLNPMHQLLRHFQKDAKVLFQNWGIETIDNVM FT GMIGILPDMTPSTEMSLRGIRVSKMGVDEYSSTERVVVSIDRFLRVRDQRGNVLLSPEE FT VSETQGTEKLTITYSSSMMWEINGPESVLVNTYQWIIRNWEFVKIQWSQDPTMLYNKME FT FEPFQSLVPKATRSRYSGFVRTLFQQMRDVLGTFDTVQIIKLLPFAAAPPEQSRMQFSS FT LTVNVRGSGLRILVRGNSPVFNYNKATKRLTVLGKDAGALTEDPDEGTSGVESAVLRGF FT LILGKEDKRYGPALSINELSNLAKGEKANVLIGQGDIVLVMKRKRDSSILTDSQTATKR FT IRMAIN" XX SQ Sequence 2316 BP; 789 A; 439 C; 587 G; 501 T; 0 other; tcaaatatat tcaatatgga gagaataaaa gagctgagag atctaatgtc gcagtcccgc 60 actcgcgaga tactcactaa gaccactgtg gaccatatgg ccatcatcaa aaaatacaca 120 tcgggaaggc aagagaagaa ccccgcactc agaatgaagt ggatgatggc aatgaaatac 180 ccaattacgg cagacaagag aataatggac ataatcccag agaggaatga acaaggacaa 240 accctctgga gcaaaacaaa cgatgctgga tcagaccgag tgatggtatc acctctggcc 300 gtaacatggt ggaataggaa tggcccaaca acaagtacag ttcattaccc taaggtatat 360 aaaacttatt tcgaaaaggt cgaaaggttg aaacatggta ccttcggccc tgtccacttc 420 agaaatcaag ttaaaataag gaggagagtt gatacaaacc ctggccatgc agatctcagt 480 gccaaggagg cacaggatgt gattatggaa gttgttttcc caaatgaagt gggggcaaga 540 atactgacat cagagtcaca gctggcaata acaaaagaga agaaagaaga gctccagaat 600 tgtaaaattg ctcccttgat ggtggcgtac atgctagaaa gagaattggt ccgtaaaaca 660 aggtttcttc cggtagccgg tgggacaggc agtgtttata ttgaggtgtt gcatttgacc 720 caagggacgt gctgggagca gatgtacacc ccaggaggag aagtgaggaa tgatgatgtt 780 gaccaaagtt tgatcatcgc tgctagaaac atagtaagaa gagcagcagt gtcagcagac 840 ccattagcat ctctcttgga aatgtgccac agcacacaga ttggaggtgt gaagatggtg 900 gacatcctta aacagaatcc aactgaagag caagccgtag acatatgcaa ggcagcaata 960 gggttgagga tcagctcatc tttcagtttt ggtgggttca ctttcaaaag gacaagcgga 1020 tcatcaatca agaaagaaga agaaatgcta acgggcaacc tccaaacact gaaattaaga 1080 gtacatgaag gatatgaaga attcacaatg gttgggagaa gagcaacagc tattctcaga 1140 aaggcaacca ggaggttgat ccaattaata gtaagcggga gagacgagca gtcaatagct 1200 gaagcaataa ttgtggccat ggtattctca caagaggatt gcatgatcaa agcagttagg 1260 ggcgatctga actttgtcaa tagggcaaac cagagactga atcccatgca ccaactcttg 1320 aggcatttcc aaaaagatgc aaaagtgctt ttccagaact ggggaattga aaccatcgac 1380 aatgtgatgg gaatgatcgg aatactgccc gacatgaccc caagcacgga gatgtcactg 1440 agaggaataa gagtcagcaa gatgggagta gatgaatact ccagcacgga gagagtggtg 1500 gtgagtattg accgattttt gagggttaga gatcaaagag gaaacgtact attgtctccc 1560 gaagaagtca gtgaaacgca aggaactgag aagttgacaa taacttattc gtcatcaatg 1620 atgtgggaga tcaacggccc tgagtcagtg ctagtcaaca cttatcaatg gataatcaga 1680 aactgggaat ttgtgaaaat tcaatggtca caagacccca caatgttata caacaaaatg 1740 gaatttgaac catttcagtc tcttgtccct aaggcaacca gaagccggta cagtggattc 1800 gtaaggacac tgttccagca aatgagggat gtgcttggga catttgacac tgtccaaata 1860 ataaaacttc tcccctttgc tgctgctcca ccagaacaga gcaggatgca attttcttca 1920 ttgactgtga atgtgagagg atcagggtta aggatactgg taagaggcaa ttctccagtg 1980 ttcaattaca acaaggcaac caaacgactt acggttcttg gaaaggatgc aggtgcattg 2040 actgaagatc cagatgaagg cacatctggg gtggagtctg ctgtcctgag aggattcctc 2100 attttaggca aagaagacaa gagatatggc ccagcattaa gcatcaatga actgagcaat 2160 cttgcaaaag gagagaaagc taatgtgcta attgggcagg gggacatagt gttggtaatg 2220 aaacgaaaac gggactctag catacttact gacagccaga cagcgaccaa aagaattcgg 2280 atggccatca attagtgtcg aattgtctaa aaacga 2316 // ID MT167114; SV 1; linear; viral cRNA; STD; VRL; 2208 BP. XX AC MT167114; XX PR Project:PRJNA37813; XX DT 17-MAR-2020 (Rel. 144, Created) DT 17-MAR-2020 (Rel. 144, Last updated, Version 1) XX DE Influenza A virus (A/Georgia/45/2019(H1N1)) segment 3 polymerase PA (PA) DE and PA-X protein (PA-X) genes, complete cds. XX KW . XX OS Influenza A virus OC Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Insthoviricetes; OC Articulavirales; Orthomyxoviridae; Alphainfluenzavirus. XX RN [1] RP 1-2208 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT "Influenza Sequencing Activity group"; RL Unpublished. XX RN [2] RP 1-2208 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT ; RL Submitted (09-MAR-2020) to the INSDC. RL WHO Collaborating Center for Surveillance, Epidemiology and Control of RL Influenza, Influenza Division, Centers for Disease Control and Prevention, RL 1600 Clifton Road, N.E., Atlanta, GA 30333, USA XX DR MD5; ae73852723ad53e04d0c01bbf2f15728. XX CC ##FluData-START## CC EPI_ISOLATE_ID :: EPI_ISL_409126 CC NAME :: A/Georgia/45/2019 CC TYPE :: H1N1 CC Segment_name :: PA CC HOST_AGE :: 46 CC PASSAGE :: Original CC LOCATION :: United States / Georgia CC COLLECT_DATE :: 15-Nov-2019 CC Lineage :: A(H1N1)pdm09 CC SPECIMEN_ID :: 20B0033761 ORIGINAL CC SENDER_LAB :: Georgia Public Health Laboratory CC SEQLAB_SAMPLE_ID :: 3026054754 CC EPI_SEQUENCE_ID :: EPI1683874 CC ##FluData-END## XX FH Key Location/Qualifiers FH FT source 1..2208 FT /organism="Influenza A virus" FT /segment="3" FT /host="Homo sapiens" FT /strain="A/Georgia/45/2019" FT /serotype="H1N1" FT /mol_type="viral cRNA" FT /country="USA:Georgia" FT /collection_date="15-Nov-2019" FT /db_xref="taxon:11320" FT gene 13..2163 FT /gene="PA" FT CDS 13..2163 FT /codon_start=1 FT /gene="PA" FT /product="polymerase PA" FT /protein_id="QIJ23572.1" FT /translation="MEDFVRQSFNPMIVELAEKAMKEYGEDPKIETNKFAAICTHLEVC FT FMYSDFHFIDERGESIIVESGDPNALLKHRFEIIEGRDRIMAWTVVNSICNTTGIEKPK FT FLPDLYDYKENRFIEIGVTRREVHIYYLEKANKIKSEKTHIHIFSFTGEEMATKADYTL FT DEESRARIKTRLFTIRQEMASRSLWDSFRQSERGEETIEEKFEITGTMRKLADQSLPPN FT FSSLENFRAYVDGFEPNGCIEGKLSQMSKEVNAKIEPFLRTTPRPLRLPDGPLCHQRSK FT FLLMDALKLSIEDPSHEGEGIPLYDAIKCMKTFFGWKEPKIVKPHEKGVNPNYLMAWKQ FT VLAELQDIENEEKIPRTKNMKKTSQLKWALGENMAPEKVDFDDCKDVGDLKQYDSDEPE FT PRSLASWVQNEFNKACELTDSSWIELDEIGEDVAPIEHIASMRRNYFTAEVSHCRATEY FT IMKGVYINTALLNASCAAMDDFQLIPMISKCRTKEGRRKTNLYGFIIKGRSHLRNDTDV FT VNFVSMEFSLTDPRLEPHKWEKYCVLEIGDMLLRTAIGQVSRPMFLYVRTNGTSKIKMK FT WGMEMRRCLLQSLQQIESMIEAESSVKEKDMTKEFFENKSETWPIGESPRGVEEGSIGK FT VCRTLLAKSVFNSLYASPQLEGFSAESRKLLLIVQALRDNLEPGTFDLGGLYEAIEECL FT INDPWVLLNASWFNSFLTHALK" FT gene 13..712 FT /gene="PA-X" FT CDS join(13..582,584..712) FT /codon_start=1 FT /ribosomal_slippage FT /gene="PA-X" FT /product="PA-X protein" FT /protein_id="QIJ23573.1" FT /translation="MEDFVRQSFNPMIVELAEKAMKEYGEDPKIETNKFAAICTHLEVC FT FMYSDFHFIDERGESIIVESGDPNALLKHRFEIIEGRDRIMAWTVVNSICNTTGIEKPK FT FLPDLYDYKENRFIEIGVTRREVHIYYLEKANKIKSEKTHIHIFSFTGEEMATKADYTL FT DEESRARIKTRLFTIRQEMASRSLWDSFVSPKEAKKQLKKSLRLQELCASLPIKVSHQT FT SPALKTSEPM" XX SQ Sequence 2208 BP; 744 A; 426 C; 520 G; 518 T; 0 other; tactgatcca aaatggaaga ctttgtgcga caaagcttca atccaatgat cgtcgagctt 60 gcggaaaagg caatgaaaga atatggggaa gaccccaaaa tcgaaactaa taagtttgct 120 gcaatttgca cacatttgga agtttgtttc atgtattcgg atttccattt cattgatgaa 180 cggggtgaat caataattgt agaatctggt gacccaaatg cactgttgaa gcaccgattt 240 gagataattg aaggaagaga ccgaatcatg gcctggacag tggtgaacag tatatgtaac 300 acaacaggga tagagaagcc caaatttctt cctgatttgt atgactacaa agagaaccgg 360 ttcattgaaa ttggagtaac acggagagaa gtccacatat attacctaga gaaagccaac 420 aaaataaagt ctgagaagac acacattcac atcttttcat tcactggaga ggagatggcc 480 accaaagcgg actacaccct tgacgaagaa agcagagcaa gaatcaaaac taggcttttc 540 acgataagac aagaaatggc cagtaggagt ttatgggatt cctttcgtca gtccgaaaga 600 ggcgaagaaa caattgaaga aaagtttgag attacaggaa ctatgcgcaa gcttgccgat 660 caaagtctcc caccaaactt ctccagcctt gaaaacttca gagcctatgt agatggattc 720 gagccgaacg gctgcattga gggcaagctt tcccaaatgt caaaagaagt gaacgccaaa 780 attgaaccat tcttgaggac gacaccacgc cccctcagat tacctgatgg acccctttgc 840 catcagaggt caaagttcct gctgatggat gccctgaaat taagcattga agacccgagt 900 cacgaggggg aaggaatacc actatatgat gcaatcaaat gcatgaagac attctttggc 960 tggaaagagc ctaaaatagt caaaccacat gagaaaggcg taaatcccaa ttacctcatg 1020 gcttggaagc aggtgctagc agagctacag gacattgaaa atgaagagaa aatcccaagg 1080 acaaagaaca tgaagaaaac aagtcaattg aagtgggcac tcggtgaaaa tatggcacca 1140 gaaaaagtgg actttgatga ctgtaaagat gttggagacc ttaaacagta tgacagtgat 1200 gagccagagc ccagatctct agcaagctgg gtccaaaatg aattcaataa ggcatgtgaa 1260 ttgactgatt caagctggat agaacttgat gaaataggag aagatgttgc cccgattgaa 1320 catatagcaa gcatgaggag gaactatttt acagcagaag tgtcccactg cagggctact 1380 gaatatataa tgaagggagt gtacataaat acggccttgc tcaatgcatc ctgtgcagcc 1440 atggatgact ttcagctgat tccaatgata agcaaatgta ggaccaaaga aggaagacgg 1500 aaaacaaacc tgtatggatt cattataaaa ggaaggtctc atttgagaaa tgatactgat 1560 gtagtgaact ttgtaagtat ggagttctca ctcactgatc caagactgga accacacaaa 1620 tgggaaaaat actgtgttct tgaaatagga gacatgctat tgaggactgc gataggtcaa 1680 gtgtcgaggc ccatgttcct atatgtgaga accaatggaa cctccaagat caagatgaaa 1740 tggggcatgg aaatgaggcg ctgccttctt caatctcttc agcagattga gagcatgatt 1800 gaagccgagt cttctgtcaa agagaaagac atgaccaagg aattctttga aaacaaatcg 1860 gaaacatggc caatcggaga gtcacccagg ggagtagagg aaggctctat tggaaaagtg 1920 tgcagaacct tactggcaaa atctgtgttc aacagtctat acgcttctcc acaacttgag 1980 gggttttcgg ctgaatcaag aaaattgctt ctcattgttc aggcacttag ggacaacctg 2040 gaacctggaa ccttcgatct tggggggcta tatgaagcaa tcgaggagtg cttgattaat 2100 gatccctggg ttttgcttaa tgcatcttgg ttcaactcct tcctcacaca tgcactgaag 2160 tagttgtggc aatgctacta tttgctatcc atattgtcca aaaaagta 2208 // ID MT167115; SV 1; linear; viral cRNA; STD; VRL; 1752 BP. XX AC MT167115; XX PR Project:PRJNA37813; XX DT 17-MAR-2020 (Rel. 144, Created) DT 17-MAR-2020 (Rel. 144, Last updated, Version 1) XX DE Influenza A virus (A/Georgia/45/2019(H1N1)) segment 4 hemagglutinin (HA) DE gene, complete cds. XX KW . XX OS Influenza A virus OC Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Insthoviricetes; OC Articulavirales; Orthomyxoviridae; Alphainfluenzavirus. XX RN [1] RP 1-1752 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT "Influenza Sequencing Activity group"; RL Unpublished. XX RN [2] RP 1-1752 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT ; RL Submitted (09-MAR-2020) to the INSDC. RL WHO Collaborating Center for Surveillance, Epidemiology and Control of RL Influenza, Influenza Division, Centers for Disease Control and Prevention, RL 1600 Clifton Road, N.E., Atlanta, GA 30333, USA XX DR MD5; 3db4f3b8251affe5789915b9648f7230. XX CC ##FluData-START## CC EPI_ISOLATE_ID :: EPI_ISL_409126 CC NAME :: A/Georgia/45/2019 CC TYPE :: H1N1 CC Segment_name :: HA CC HOST_AGE :: 46 CC PASSAGE :: Original CC LOCATION :: United States / Georgia CC COLLECT_DATE :: 15-Nov-2019 CC Lineage :: A(H1N1)pdm09 CC SPECIMEN_ID :: 20B0033761 ORIGINAL CC SENDER_LAB :: Georgia Public Health Laboratory CC SEQLAB_SAMPLE_ID :: 3026054754 CC EPI_SEQUENCE_ID :: EPI1683880 CC ##FluData-END## XX FH Key Location/Qualifiers FH FT source 1..1752 FT /organism="Influenza A virus" FT /segment="4" FT /host="Homo sapiens" FT /strain="A/Georgia/45/2019" FT /serotype="H1N1" FT /mol_type="viral cRNA" FT /country="USA:Georgia" FT /collection_date="15-Nov-2019" FT /db_xref="taxon:11320" FT gene 21..1721 FT /gene="HA" FT CDS 21..1721 FT /codon_start=1 FT /gene="HA" FT /product="hemagglutinin" FT /function="receptor binding and fusion protein" FT /protein_id="QIJ23574.1" FT /translation="MKAILVVLLYTFTTANADTLCIGYHANNSTDTVDTVLEKNVTVTH FT SVNLLEDKHNGKLCKLRGVAPLHLGKCNIAGWILGNPECESLSTARSWSYIVETSNSDN FT GTCYPGDFINYEELREQLSSVSSFERFEIFPKTSSWPNHDSNNGVTAACSHAGAKSFYK FT NLIWLVKKGNSYPMLNQTYINDKGKEVLVLWGIHHPPTTADQQSLYQNADAYVFVGTSR FT YSKKFKPEIAKRPKVRDQEGRMNYYWTLVDPGDKITFEATGNLVVPRYAFTMERDAGSG FT IIISDTPIHDCNTTCQTPEGAINTSLPFQNVNPITIGKCPKYVKSTKLRLATGLRNVPS FT IQSRGLFGAIAGFIEGGWTGMVDGWYGYHHQNEQGSGYAADLKSTQNAIDKITNKVNSV FT IEKMNTQFTAVGKEFNHLEKRIENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSN FT VKNLYEKVRNQLKNNAKEIGNGCFEFYHKCDNTCMESVKNGTYDYPKYSEEAKLNREKI FT DGVKLESTRIYQILAIYSTAASSLVLVVSLGAISFWMCSNGSLQCRICI" FT sig_peptide 21..71 FT /gene="HA" FT mat_peptide 72..1052 FT /gene="HA" FT /product="HA1" FT mat_peptide 1053..1718 FT /gene="HA" FT /product="HA2" XX SQ Sequence 1752 BP; 631 A; 327 C; 381 G; 413 T; 0 other; ggaaaacaaa agcaacaaaa atgaaggcaa tactagtagt tctgctgtat acattcacaa 60 ccgcaaatgc agacacatta tgtataggtt atcatgcgaa caattcaaca gacactgtcg 120 acacagtact agaaaagaat gtaacagtaa cacactctgt taatcttcta gaagacaagc 180 ataacggaaa actatgcaaa ctaagagggg tagccccatt gcatttgggt aaatgtaaca 240 ttgctggctg gatcctggga aatccagagt gtgaatcact ctccacagca agatcatggt 300 cctacattgt ggaaacatct aattcagaca atggaacgtg ttacccagga gatttcatca 360 attatgagga gctaagagag cagttgagct cagtgtcatc atttgaaagg tttgaaatat 420 tccccaagac aagttcatgg cctaatcatg attcgaacaa tggtgtaaca gcagcatgtt 480 ctcatgctgg agcaaaaagc ttctacaaaa acttgatatg gctggttaaa aaaggaaatt 540 catacccaat gctcaaccaa acctacatta atgataaagg gaaagaagtc ctcgtgctgt 600 ggggcattca ccatccacct actactgctg accaacaaag tctctatcag aatgcagatg 660 catatgtttt tgtggggaca tcaagataca gcaagaagtt caagccggag atagcaaaaa 720 gacccaaagt gagggatcaa gaagggagaa tgaactatta ctggacacta gtagacccgg 780 gagacaaaat aacattcgag gcaactggaa atctagtggt accgagatat gcattcacaa 840 tggaaagaga tgctggatct ggtattatca tttcagatac accaatccac gattgcaata 900 caacttgtca gacacctgag ggtgctataa acaccagcct cccatttcag aatgtaaatc 960 cgatcacaat tgggaaatgt ccaaagtatg taaaaagcac aaaattgaga ctggccacag 1020 gattgaggaa tgtcccgtct attcaatcta gaggcctatt cggggccatt gccggcttca 1080 ttgaaggggg gtggacagga atggtagatg gatggtacgg ttatcaccat caaaatgagc 1140 aggggtcagg atatgcagcc gatctgaaga gcacacaaaa tgccattgat aagattacta 1200 acaaagtaaa ttctgttatt gaaaagatga atacacagtt cacagcagtg ggtaaagagt 1260 tcaaccacct tgaaaaaaga atagagaatc taaataaaaa agttgatgat ggtttcctgg 1320 acatttggac ttacaatgcc gaactgttgg ttctactgga aaacgaaaga actttggact 1380 atcacgattc aaatgtgaag aacttgtatg aaaaagtaag aaaccaatta aaaaacaatg 1440 ccaaggaaat tggaaacggc tgctttgaat tttaccacaa atgcgacaac acatgcatgg 1500 aaagtgtcaa gaatgggact tatgactacc caaaatactc agaggaagca aaattaaaca 1560 gagaaaaaat agatggagta aagctggaat caacaaggat ctaccagatt ttggcgatct 1620 attcaactgc cgccagttca ttggtactgg tagtctccct gggggcaatc agcttctgga 1680 tgtgctctaa tgggtctcta cagtgtagaa tatgtattta acattaggat ttcagaatta 1740 tgagaaaaac ac 1752 // ID MT167116; SV 1; linear; viral cRNA; STD; VRL; 1540 BP. XX AC MT167116; XX PR Project:PRJNA37813; XX DT 17-MAR-2020 (Rel. 144, Created) DT 17-MAR-2020 (Rel. 144, Last updated, Version 1) XX DE Influenza A virus (A/Georgia/45/2019(H1N1)) segment 5 nucleocapsid protein DE (NP) gene, complete cds. XX KW . XX OS Influenza A virus OC Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Insthoviricetes; OC Articulavirales; Orthomyxoviridae; Alphainfluenzavirus. XX RN [1] RP 1-1540 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT "Influenza Sequencing Activity group"; RL Unpublished. XX RN [2] RP 1-1540 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT ; RL Submitted (09-MAR-2020) to the INSDC. RL WHO Collaborating Center for Surveillance, Epidemiology and Control of RL Influenza, Influenza Division, Centers for Disease Control and Prevention, RL 1600 Clifton Road, N.E., Atlanta, GA 30333, USA XX DR MD5; 2b9ce3f7120b40175d4fa80ebfc12ff1. XX CC ##FluData-START## CC EPI_ISOLATE_ID :: EPI_ISL_409126 CC NAME :: A/Georgia/45/2019 CC TYPE :: H1N1 CC Segment_name :: NP CC HOST_AGE :: 46 CC PASSAGE :: Original CC LOCATION :: United States / Georgia CC COLLECT_DATE :: 15-Nov-2019 CC Lineage :: A(H1N1)pdm09 CC SPECIMEN_ID :: 20B0033761 ORIGINAL CC SENDER_LAB :: Georgia Public Health Laboratory CC SEQLAB_SAMPLE_ID :: 3026054754 CC EPI_SEQUENCE_ID :: EPI1683869 CC ##FluData-END## XX FH Key Location/Qualifiers FH FT source 1..1540 FT /organism="Influenza A virus" FT /segment="5" FT /host="Homo sapiens" FT /strain="A/Georgia/45/2019" FT /serotype="H1N1" FT /mol_type="viral cRNA" FT /country="USA:Georgia" FT /collection_date="15-Nov-2019" FT /db_xref="taxon:11320" FT gene 34..1530 FT /gene="NP" FT CDS 34..1530 FT /codon_start=1 FT /gene="NP" FT /product="nucleocapsid protein" FT /protein_id="QIJ23575.1" FT /translation="MASQGTKRSYEQMETGGERQDTTEIRASVGRMIGGIGRFYIQMCT FT ELKLSDYDGRLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRIDGKW FT TRELILYDKEEIRRVWRQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRM FT CSLMQGSTLPRRSGAAGAAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTRVAYERM FT CNILKGKFQTAAQRAMMDQVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVY FT GLAVASGHDFEREGYSLVGIDPFKLLQNSQVISLMRPNENPAHKSQLVWMACHSAAFED FT LRVSSFIRGKKVIPRGKLSTRGVQIASNENVETMDSNTLELRSRYWAIRTRSGGNTNQQ FT KASAGQISVQPTFSVQRNLPFERATVMAAFSGNNEGRTSDMRTEVIRMMESAKPEDLSF FT QGRGVFELSDEKATNPIVPSFDMSNEGSYFFGDNAEEYDN" XX SQ Sequence 1540 BP; 525 A; 297 C; 394 G; 324 T; 0 other; gtagataatc actcaatgag tgacatcgaa gccatggcgt ctcaaggcac caaacgatca 60 tatgaacaaa tggagactgg tggggagcgc caggatacca cagaaatcag agcatctgtt 120 ggaagaatga ttggtggaat cgggagattc tacatccaaa tgtgcactga actaaaactc 180 agtgattatg atggacgact aatccagaat agcataacaa tagagaggat ggtgctttct 240 gcttttgatg agagaagaaa taaataccta gaagagcatc caagtgctgg gaaggaccct 300 aagaaaacag gaggacccat ctatagaaga atagacggaa aatggacgag agaactcatc 360 ctttatgaca aagaagaaat aaggagagtt tggcgccaag caaacaatgg cgaagatgca 420 acagcaggtc ttactcacat catgatttgg cattccaatc tgaatgatgc cacatatcag 480 aggacaagag cacttgttcg cactggaatg gatcccagaa tgtgctctct aatgcaaggt 540 tcaacacttc ccaggaggtc tggtgccgca ggtgctgcag taaaaggagt tggaacaata 600 gctatggaat taatcagaat gataaaacgt ggaatcaatg acagaaattt ctggaggggt 660 gaaaatggac gaaggacaag agttgcttat gaaagaatgt gcaatatcct caaaggaaaa 720 tttcaaacag ctgcccagag ggcaatgatg gatcaagtaa gagaaagtcg aaacccagga 780 aacgctgaga ttgaagacct cattttcctg gcacggtcag cactcattct gagaggatca 840 gttgcacata aatcctgcct gcctgcttgt gtgtatgggc ttgcagtggc aagtggccat 900 gactttgaaa gagaagggta ctcactggtc gggatagacc cattcaaatt actccaaaac 960 agtcaagtga tcagcctgat gagaccaaat gaaaatccag ctcataagag tcaattggta 1020 tggatggcat gccactctgc tgcatttgaa gacttaagag tatcaagttt cataagagga 1080 aagaaagtga tcccaagagg aaagctttcc acaagagggg ttcagattgc ttcaaatgag 1140 aatgtggaaa ccatggactc caataccctg gaactaagaa gcagatactg ggccataaga 1200 accaggagtg gaggaaatac caatcaacag aaggcatccg caggccagat cagtgtgcag 1260 cctacattct cagtgcagcg aaatctccct tttgaaagag caaccgttat ggcagcattc 1320 agcgggaaca atgaaggacg gacatccgac atgcgaacag aagttataag aatgatggaa 1380 agcgcaaagc cagaggattt gtccttccag gggcggggag tcttcgagct ctcggacgaa 1440 aaggcaacga acccgatcgt gccttctttt gacatgagta atgaagggtc ttatttcttc 1500 ggagacaatg cagaggagta tgacaattga agaaaaatac 1540 // ID MT167117; SV 1; linear; viral cRNA; STD; VRL; 1433 BP. XX AC MT167117; XX PR Project:PRJNA37813; XX DT 17-MAR-2020 (Rel. 144, Created) DT 17-MAR-2020 (Rel. 144, Last updated, Version 1) XX DE Influenza A virus (A/Georgia/45/2019(H1N1)) segment 6 neuraminidase (NA) DE gene, complete cds. XX KW . XX OS Influenza A virus OC Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Insthoviricetes; OC Articulavirales; Orthomyxoviridae; Alphainfluenzavirus. XX RN [1] RP 1-1433 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT "Influenza Sequencing Activity group"; RL Unpublished. XX RN [2] RP 1-1433 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT ; RL Submitted (09-MAR-2020) to the INSDC. RL WHO Collaborating Center for Surveillance, Epidemiology and Control of RL Influenza, Influenza Division, Centers for Disease Control and Prevention, RL 1600 Clifton Road, N.E., Atlanta, GA 30333, USA XX DR MD5; 1666c620573dc130a13dc010dd3942f7. XX CC ##FluData-START## CC EPI_ISOLATE_ID :: EPI_ISL_409126 CC NAME :: A/Georgia/45/2019 CC TYPE :: H1N1 CC Segment_name :: NA CC HOST_AGE :: 46 CC PASSAGE :: Original CC LOCATION :: United States / Georgia CC COLLECT_DATE :: 15-Nov-2019 CC Lineage :: A(H1N1)pdm09 CC SPECIMEN_ID :: 20B0033761 ORIGINAL CC SENDER_LAB :: Georgia Public Health Laboratory CC SEQLAB_SAMPLE_ID :: 3026054754 CC EPI_SEQUENCE_ID :: EPI1683877 CC ##FluData-END## XX FH Key Location/Qualifiers FH FT source 1..1433 FT /organism="Influenza A virus" FT /segment="6" FT /host="Homo sapiens" FT /strain="A/Georgia/45/2019" FT /serotype="H1N1" FT /mol_type="viral cRNA" FT /country="USA:Georgia" FT /collection_date="15-Nov-2019" FT /db_xref="taxon:11320" FT gene 9..1418 FT /gene="NA" FT CDS 9..1418 FT /codon_start=1 FT /gene="NA" FT /product="neuraminidase" FT /protein_id="QIJ23576.1" FT /translation="MNPNQKIITIGSICMTIGMANLILQIGNIISIWVSHSIQIGNQSQ FT IETCNQSVITYENNTWVNQTYVNISNTNLAARQSVASVKIAGNSSLCPVSGWAIYSKDN FT SVRIGSKGDVFVIREPFISCSPLECRTFFLTQGALLNDKHSNGTIKDRSPYRTLMSCPI FT GEVPSPYNSRFESVAWSASACHDGTNWLTIGISGPDSGAVAVLKYNGIITDTIKSWRNN FT ILRTQESECACVNGSCFTIMTDGPSDGQASYKIFRIEKGKIIKSVEMKAPNYHYEECSC FT YPDSSEITCVCRDNWHGSNRPWVSFNQNLEYQMGYICSGVFGDNPRPNDKTGSCGPVSS FT NGANGVKGFSFKYGNGVWIGRTKSISSRKGFEMIWDPNGWTGTDNKFSIKQDIVGINEW FT SGYSGSFVQHPELTGLDCIRPCFWVELIRGRPEENTVWTSGSSISFCGVDSDTVGWSWP FT DGAELPFTIDK" XX SQ Sequence 1433 BP; 459 A; 261 C; 339 G; 374 T; 0 other; agtttaaaat gaatccaaac caaaagataa taaccattgg ttcgatctgt atgacaattg 60 gaatggctaa cttaatatta caaattggga acataatctc aatatgggtt agccactcaa 120 ttcaaattgg aaatcaaagc cagattgaaa catgcaatca aagcgtcatt acttatgaaa 180 acaacacttg ggtaaatcag acatatgtta acatcagtaa caccaacttg gctgctagac 240 agtcagtggc ttctgtgaaa atagcaggca attcctctct ctgccctgtt agtggatggg 300 ctatatacag taaagacaac agtgtgagaa tcggttccaa gggggatgtg tttgtcataa 360 gggaaccatt catatcatgc tctcccttgg aatgcagaac cttcttcttg actcaagggg 420 ccttgctaaa tgacaaacat tccaatggaa ccattaaaga caggagccca tatcgaaccc 480 taatgagctg tcctattggt gaagttccct ctccatacaa ctcaagattt gagtcagtcg 540 cttggtcagc aagtgcttgt catgatggca ccaattggct aacaattgga atttctggcc 600 cagacagtgg ggcagtggct gtgttaaagt acaatggcat aataacagac actatcaaga 660 gttggaggaa caatatattg agaacacaag agtctgaatg tgcatgtgta aatggttctt 720 gctttaccat aatgaccgat ggaccaagtg atggacaggc ctcatacaaa atcttcagaa 780 tagaaaaggg aaagataatc aaatcagtcg aaatgaaagc ccctaattat cactatgagg 840 aatgctcctg ttatcccgac tctagtgaaa tcacatgtgt gtgcagggat aactggcatg 900 gctcgaatcg accgtgggtg tctttcaacc agaatctgga atatcagatg ggatacatat 960 gcagtggggt tttcggagac aatccacgcc ctaatgataa gacaggcagt tgtggtccag 1020 tatcgtctaa tggagcaaat ggagtaaagg gattttcatt taaatacggc aatggtgttt 1080 ggatagggag aactaagagc attagttcaa gaaaaggttt tgaaatgatt tgggatccga 1140 atggatggac tgggactgac aataaattct caataaagca agatatcgta ggaataaatg 1200 agtggtcagg gtatagcggg agttttgttc agcatccaga actaacaggg ctggattgta 1260 taagaccttg cttctgggtt gaactaataa gaggacgacc cgaagagaac acagtctgga 1320 ctagcgggag cagcatatcc ttttgtggtg tagacagtga cactgtgggt tggtcttggc 1380 cagacggtgc tgagttgcca tttaccattg acaagtaatt tgttcaaaaa act 1433 // ID MT167118; SV 1; linear; viral cRNA; STD; VRL; 1002 BP. XX AC MT167118; XX PR Project:PRJNA37813; XX DT 17-MAR-2020 (Rel. 144, Created) DT 17-MAR-2020 (Rel. 144, Last updated, Version 1) XX DE Influenza A virus (A/Georgia/45/2019(H1N1)) segment 7 matrix protein 2 (M2) DE and matrix protein 1 (M1) genes, complete cds. XX KW . XX OS Influenza A virus OC Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Insthoviricetes; OC Articulavirales; Orthomyxoviridae; Alphainfluenzavirus. XX RN [1] RP 1-1002 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT "Influenza Sequencing Activity group"; RL Unpublished. XX RN [2] RP 1-1002 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT ; RL Submitted (09-MAR-2020) to the INSDC. RL WHO Collaborating Center for Surveillance, Epidemiology and Control of RL Influenza, Influenza Division, Centers for Disease Control and Prevention, RL 1600 Clifton Road, N.E., Atlanta, GA 30333, USA XX DR MD5; ec4b88d1b6051eb26db9b4fa16d83213. XX CC ##FluData-START## CC EPI_ISOLATE_ID :: EPI_ISL_409126 CC NAME :: A/Georgia/45/2019 CC TYPE :: H1N1 CC Segment_name :: M CC HOST_AGE :: 46 CC PASSAGE :: Original CC LOCATION :: United States / Georgia CC COLLECT_DATE :: 15-Nov-2019 CC Lineage :: A(H1N1)pdm09 CC SPECIMEN_ID :: 20B0033761 ORIGINAL CC SENDER_LAB :: Georgia Public Health Laboratory CC SEQLAB_SAMPLE_ID :: 3026054754 CC EPI_SEQUENCE_ID :: EPI1683872 CC ##FluData-END## XX FH Key Location/Qualifiers FH FT source 1..1002 FT /organism="Influenza A virus" FT /segment="7" FT /host="Homo sapiens" FT /strain="A/Georgia/45/2019" FT /serotype="H1N1" FT /mol_type="viral cRNA" FT /country="USA:Georgia" FT /collection_date="15-Nov-2019" FT /db_xref="taxon:11320" FT gene 14..995 FT /gene="M2" FT CDS join(14..39,728..995) FT /codon_start=1 FT /gene="M2" FT /product="matrix protein 2" FT /protein_id="QIJ23578.1" FT /translation="MSLLTEVETPTRSEWECRCSGSSDPLVIAANIIGILHLILWITDR FT LFFKCIYRRFKYGLKRGPSTEGVPESMREEYQQEQQSAVDVDDGHFVNIELE" FT gene 14..772 FT /gene="M1" FT CDS 14..772 FT /codon_start=1 FT /gene="M1" FT /product="matrix protein 1" FT /protein_id="QIJ23577.1" FT /translation="MSLLTEVETYVLSIIPSGPLKAEIAQRLESVFAGKNTDLEALMEW FT LKTRPILSPLTKGILGFVFTLTVPSERGLQRRRFIQNALNGNGDPNNMDRAVKLYKKLK FT REITFHGAKEVSLSYSTGALASCMGLIYNRMGTVTTEAAFGLVCATCEQIADSQHRSHR FT QMATTTNPLIRHENRMVLASTTAKAMEQVAGSSEQAAEAMEVANKTRQMVHAMRTIGTH FT PSSSAGLRDDLLENLQAYQKRMGVQMQRFK" XX SQ Sequence 1002 BP; 298 A; 206 C; 257 G; 241 T; 0 other; tagatgttta aagatgagtc ttctaaccga ggtcgaaacg tacgttcttt ctatcatccc 60 gtcaggcccc ctcaaagccg agatcgcaca gagactggaa agtgtctttg caggaaagaa 120 cacagatctt gaggctctca tggaatggct aaagacaaga ccaatcttgt cacctctgac 180 taagggaatt ttaggatttg tgttcacgct cactgtgccc agtgagcgag gactgcagcg 240 tagacgcttt atccaaaatg ccctaaatgg aaatggggac ccgaacaaca tggatagagc 300 agttaaacta tacaagaagc tcaaaagaga aataacgttc catggggcca aggaggtgtc 360 actaagctat tcaactggtg cacttgcaag ttgcatgggc ctcatataca acaggatggg 420 aacagtgacc acagaagctg ctttcggtct agtttgtgcc acttgtgaac agattgctga 480 ttcacagcat cggtctcaca gacaaatggc tactaccaca aatccactaa tcaggcatga 540 aaacagaatg gtgctggcta gcactacggc aaaggctatg gaacaggtgg ctggatcgag 600 tgaacaggca gcggaggcaa tggaggttgc taataagact aggcagatgg tacatgcaat 660 gagaactatt gggactcatc ctagctccag tgctggtctg agagatgacc ttcttgaaaa 720 tttgcaggcc taccagaagc gaatgggagt gcagatgcag cggttcaagt gatcctctcg 780 tcattgcagc aaacatcatt gggattttgc acctgatatt gtggattact gatcgtcttt 840 ttttcaaatg catttatcgt cgctttaaat acggtttgaa aagagggcct tctacggaag 900 gagtgcctga gtccatgagg gaagaatatc aacaggagca gcagagtgct gtggatgttg 960 acgatggtca ttttgtcaac atagagctag agtaaaaaac ta 1002 // ID MT167119; SV 1; linear; viral cRNA; STD; VRL; 865 BP. XX AC MT167119; XX PR Project:PRJNA37813; XX DT 17-MAR-2020 (Rel. 144, Created) DT 17-MAR-2020 (Rel. 144, Last updated, Version 1) XX DE Influenza A virus (A/Georgia/45/2019(H1N1)) segment 8 nuclear export DE protein (NEP) and nonstructural protein 1 (NS1) genes, complete cds. XX KW . XX OS Influenza A virus OC Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Insthoviricetes; OC Articulavirales; Orthomyxoviridae; Alphainfluenzavirus. XX RN [1] RP 1-865 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT "Influenza Sequencing Activity group"; RL Unpublished. XX RN [2] RP 1-865 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT ; RL Submitted (09-MAR-2020) to the INSDC. RL WHO Collaborating Center for Surveillance, Epidemiology and Control of RL Influenza, Influenza Division, Centers for Disease Control and Prevention, RL 1600 Clifton Road, N.E., Atlanta, GA 30333, USA XX DR MD5; 0758d87b4d026dca064068c69f7c52fb. XX CC ##FluData-START## CC EPI_ISOLATE_ID :: EPI_ISL_409126 CC NAME :: A/Georgia/45/2019 CC TYPE :: H1N1 CC Segment_name :: NS CC HOST_AGE :: 46 CC PASSAGE :: Original CC LOCATION :: United States / Georgia CC COLLECT_DATE :: 15-Nov-2019 CC Lineage :: A(H1N1)pdm09 CC SPECIMEN_ID :: 20B0033761 ORIGINAL CC SENDER_LAB :: Georgia Public Health Laboratory CC SEQLAB_SAMPLE_ID :: 3026054754 CC EPI_SEQUENCE_ID :: EPI1683871 CC ##FluData-END## XX FH Key Location/Qualifiers FH FT source 1..865 FT /organism="Influenza A virus" FT /segment="8" FT /host="Homo sapiens" FT /strain="A/Georgia/45/2019" FT /serotype="H1N1" FT /mol_type="viral cRNA" FT /country="USA:Georgia" FT /collection_date="15-Nov-2019" FT /db_xref="taxon:11320" FT gene 15..852 FT /gene="NEP" FT /gene_synonym="NS2" FT CDS join(15..44,517..852) FT /codon_start=1 FT /gene="NEP" FT /gene_synonym="NS2" FT /product="nuclear export protein" FT /note="nonstructural protein 2" FT /protein_id="QIJ23580.1" FT /translation="MESNTMSSFQDILMRMSKMQLGSSSEDLSGMVTRFESLKIYRDSL FT GEAVMRMGDLHYLQSRNEKWREQLGQKFEEIRWLIEEIRHRLKATENSFEQITFMQALQ FT LLLEVEQEIRAFSFQLI" FT gene 15..674 FT /gene="NS1" FT CDS 15..674 FT /codon_start=1 FT /gene="NS1" FT /product="nonstructural protein 1" FT /protein_id="QIJ23579.1" FT /translation="MESNTMSSFQVDCFLWHIRKRFADNGLGDAPFLDRLRRDQKSLKG FT RGNTLGLDIKTATLVGKQIVEWILKEESSETLRMTIASVPTSRYISDMTLEEMSRDWFM FT LMPRQKIIGPLCVRLDQAVMDKNIVLEANFSVIFNRLETLILLRAFTEEGAIVGEISPL FT PSLPGHTYEDVKNAVGVLIGGLEWNGNTVRVSENIQRFAWRSGDENGRPSLPPEQK" XX SQ Sequence 865 BP; 281 A; 163 C; 205 G; 216 T; 0 other; gtgacaaaaa cataatggaa tccaacacca tgtcaagctt tcaggtagac tgttttcttt 60 ggcatattcg caagcgattt gcagacaatg gattgggtga tgccccattc cttgatcggc 120 tacgccgaga tcaaaagtcc ttaaaaggaa gaggcaacac ccttggtctc gacatcaaaa 180 cagccactct tgttgggaaa caaattgtgg aatggatttt gaaagaggaa tccagcgaga 240 cacttagaat gacaattgca tctgtaccta cttcgcgtta catttctgac atgaccctcg 300 aggaaatgtc acgagactgg ttcatgctta tgcctaggca aaagataata ggccctcttt 360 gcgtgcgatt ggaccaggcg gtcatggata agaacatagt actggaagca aacttcagtg 420 taatcttcaa ccgattagag accttgatac tactaagagc tttcactgag gagggagcaa 480 tagttggaga aatttcacca ttaccttctc ttccaggaca tacttatgag gatgtcaaaa 540 atgcagttgg ggtcctcatc ggaggacttg agtggaatgg taacacggtt cgagtctctg 600 aaaatataca gagattcgct tggagaagcg gtgatgagaa tgggagacct tcattacctc 660 cagagcagaa atgagaagtg gcgggaacaa ttgggacaga aatttgagga aataaggtgg 720 ttaattgaag aaatacgaca cagattgaaa gcgacagaga atagtttcga acaaataaca 780 tttatgcaag ccttacaact actgcttgaa gtagagcaag agataagagc tttctcgttt 840 cagcttattt aatgataaaa aacac 865 // ID MT167120; SV 1; linear; viral cRNA; STD; VRL; 2316 BP. XX AC MT167120; XX PR Project:PRJNA37813; XX DT 17-MAR-2020 (Rel. 144, Created) DT 17-MAR-2020 (Rel. 144, Last updated, Version 1) XX DE Influenza A virus (A/Maryland/48/2019(H1N1)) segment 1 polymerase PB2 (PB2) DE gene, complete cds. XX KW . XX OS Influenza A virus OC Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Insthoviricetes; OC Articulavirales; Orthomyxoviridae; Alphainfluenzavirus. XX RN [1] RP 1-2316 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT "Influenza Sequencing Activity group"; RL Unpublished. XX RN [2] RP 1-2316 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT ; RL Submitted (09-MAR-2020) to the INSDC. RL WHO Collaborating Center for Surveillance, Epidemiology and Control of RL Influenza, Influenza Division, Centers for Disease Control and Prevention, RL 1600 Clifton Road, N.E., Atlanta, GA 30333, USA XX DR MD5; e1599217ccb479c7eef6c55a938c45f4. XX CC ##FluData-START## CC EPI_ISOLATE_ID :: EPI_ISL_409223 CC NAME :: A/Maryland/48/2019 CC TYPE :: H1N1 CC Segment_name :: PB2 CC HOST_AGE :: 1 CC HOST_GENDER :: M CC PASSAGE :: Original CC LOCATION :: United States / Maryland CC COLLECT_DATE :: 28-Dec-2019 CC Lineage :: A(H1N1)pdm09 CC SPECIMEN_ID :: A19143128 ORIGINAL CC SENDER_LAB :: Maryland Department of Health and Mental CC Hygiene CC SEQLAB_SAMPLE_ID :: 3026054655 CC EPI_SEQUENCE_ID :: EPI1684628 CC ##FluData-END## XX FH Key Location/Qualifiers FH FT source 1..2316 FT /organism="Influenza A virus" FT /segment="1" FT /host="Homo sapiens" FT /strain="A/Maryland/48/2019" FT /serotype="H1N1" FT /mol_type="viral cRNA" FT /country="USA:Maryland" FT /collection_date="28-Dec-2019" FT /db_xref="taxon:11320" FT gene 16..2295 FT /gene="PB2" FT CDS 16..2295 FT /codon_start=1 FT /gene="PB2" FT /product="polymerase PB2" FT /protein_id="QIJ23581.1" FT /translation="MERIKELRDLMSQSRTREILTKTTVDHMAIIKKYTSGRQEKNPAL FT RMKWMMAMKYPITADKRIMDIIPERNEQGQTLWSKINDAGSDRVMVSPLAVTWWNRNGP FT TTSTVHYPKVYKTYFEKVERLKHGTFGPVHFRNQVKIRRRVDTNPGHADLSAKEAQDVI FT MEVVFPNEVGARILTSESQLAITKEKKEELQNCKIAPLMVAYMLERELVRKTRFLPVAG FT GTSSVYIEVLHLTQGTCWEQMYTPGGEVRNDDVDQSLIIAARNIVRRAAVSADPLASLL FT EMCHSTQIGGVKMVDILKQNPTEEQAVDICKAAIGLRISSSFSFGGFTFKRTSGSSVKK FT EEEMLTGNLQTLKLRVHEGYEEFTMVGRRATAILRKATRRLIQLIVSGRDEQSIAEAII FT VAMVFSQEDCMIKAVRGDLNFVNRANQRLNPMHQLLRHFQKDAKVLFQNWGIETIDNVM FT GMIGILPDMTPSTEMSLRGIRVSKMGVDEYSSTERVVVSIDRFLRVRDQRGNVLLSPEE FT VSETQGTEKLTITYSSSMMWEINGPESVLVNTYQWIIRNWEIVKIQWSQDPTMLYNKME FT FEPFQSLVPKATRSRYSGFVRTLFQQMRDVLGTFDTVQIIKLLPFAAAPPEQSRMQFSS FT LTVNVRGSGLRILVRGNSPVFNYNKATKRLTILGKDAGALTEDPDEGTSGVESAVLRGF FT LILGKEDKRYGPALSINELSNLAKGEKANVLIGQGDIVLVMKRKRDSSILTDSQTATKR FT IRMAIN" XX SQ Sequence 2316 BP; 793 A; 434 C; 585 G; 504 T; 0 other; tcaaatatat tcaatatgga gagaataaaa gagctgagag atctaatgtc gcagtcccgc 60 actcgcgaga tactcactaa gaccactgtg gaccatatgg ccatcatcaa aaagtacaca 120 tcgggaaggc aagagaagaa ccccgcgctc agaatgaagt ggatgatggc aatgaaatac 180 ccaattacgg cagacaagag aataatggac ataatcccag agaggaatga acaaggacaa 240 accctctgga gcaaaataaa cgatgctgga tcagaccgag tgatggtatc acctctggca 300 gtaacatggt ggaataggaa tggtccaaca acaagtacag ttcattaccc taaggtatat 360 aaaacttatt tcgaaaaggt cgaaaggttg aaacatggta ccttcggccc tgtccacttc 420 agaaatcaag ttaaaataag gaggagagtt gatacaaacc ctggccatgc agatctcagt 480 gccaaggagg cacaggatgt gattatggaa gttgttttcc caaatgaagt gggggcaaga 540 atactgacat cagagtcaca gctggcaata acaaaagaga agaaagaaga gctccagaat 600 tgtaaaattg ctcccttgat ggtggcgtac atgctagaaa gagaattggt ccgtaaaaca 660 aggtttctcc cggtagccgg tgggacaagc agtgtttata ttgaggtgtt gcacttgacc 720 caagggacgt gctgggagca gatgtacact ccaggaggag aagtgagaaa tgatgatgtt 780 gaccaaagct tgattatcgc tgctagaaac atagtaagaa gagcagcagt gtcagcagac 840 ccattagcat ctctcttgga aatgtgccac agcacacaga ttggaggtgt gaagatggtg 900 gacatcctta aacagaatcc aactgaggag caagccgtag acatatgcaa ggcagcaata 960 gggttgagga tcagctcatc cttcagtttt ggtgggttca ctttcaaaag gacaagcgga 1020 tcatcagtca agaaagaaga agaaatgcta acgggcaacc tccaaacact gaaattaaga 1080 gtacatgaag ggtatgaaga attcacaatg gttgggagaa gagcaacagc tattctcaga 1140 aaggcaacca ggagattgat ccaattaata gtaagcggga gagacgagca gtcaatagct 1200 gaagcaataa ttgtggccat ggtattctca caagaggatt gcatgatcaa agcagttagg 1260 ggcgatctga actttgtcaa tagggcaaac cagagactga atcccatgca ccaactcttg 1320 aggcatttcc aaaaagatgc aaaagtgctt ttccagaact ggggaattga aaccatcgac 1380 aatgtgatgg gaatgatcgg aatactgccc gacatgaccc caagtacgga gatgtcactg 1440 agaggaataa gagtcagcaa gatgggagta gatgaatact ccagcacgga gagagtggta 1500 gtgagtattg accgattttt gagggttaga gatcaaagag gaaacgtact attgtctccc 1560 gaagaagtca gtgaaacgca aggaactgag aagttgacaa taacttattc gtcatcaatg 1620 atgtgggaga tcaacggccc tgagtcagtg ctagtcaaca cttatcaatg gataattaga 1680 aactgggaaa ttgtgaaaat tcaatggtca caagacccca caatgttata caacaaaatg 1740 gaatttgaac catttcagtc tcttgttcct aaggcaacca gaagccggta cagtggattc 1800 gtaaggacac tgttccagca aatgagggat gtgcttggga catttgacac tgtccaaata 1860 ataaaacttc tcccctttgc tgctgctcca ccagaacaga gcaggatgca attttcttca 1920 ttgactgtga atgtgagagg atcagggtta aggatactgg taagaggcaa ttctccagta 1980 ttcaattaca acaaggcaac caaacgactt acgattcttg gaaaggatgc aggtgcattg 2040 actgaagatc cagatgaagg cacatctggg gtggagtctg ctgtcctgag aggattcctc 2100 attttaggca aagaagacaa gagatatggc ccagcattaa gcatcaatga actgagcaat 2160 cttgcaaaag gagagaaagc taatgtgcta attgggcagg gggacatagt gttagtaatg 2220 aaacgaaaac gggactctag catacttact gacagccaga cagcgaccaa aagaattcgg 2280 atggccatca attagtgtcg aattgtttaa aaacga 2316 // ID MT167121; SV 1; linear; viral cRNA; STD; VRL; 2208 BP. XX AC MT167121; XX PR Project:PRJNA37813; XX DT 17-MAR-2020 (Rel. 144, Created) DT 17-MAR-2020 (Rel. 144, Last updated, Version 1) XX DE Influenza A virus (A/Maryland/48/2019(H1N1)) segment 3 polymerase PA (PA) DE and PA-X protein (PA-X) genes, complete cds. XX KW . XX OS Influenza A virus OC Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Insthoviricetes; OC Articulavirales; Orthomyxoviridae; Alphainfluenzavirus. XX RN [1] RP 1-2208 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT "Influenza Sequencing Activity group"; RL Unpublished. XX RN [2] RP 1-2208 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT ; RL Submitted (09-MAR-2020) to the INSDC. RL WHO Collaborating Center for Surveillance, Epidemiology and Control of RL Influenza, Influenza Division, Centers for Disease Control and Prevention, RL 1600 Clifton Road, N.E., Atlanta, GA 30333, USA XX DR MD5; 1d078fcff6f36d019ac51979d59dac2f. XX CC ##FluData-START## CC EPI_ISOLATE_ID :: EPI_ISL_409223 CC NAME :: A/Maryland/48/2019 CC TYPE :: H1N1 CC Segment_name :: PA CC HOST_AGE :: 1 CC HOST_GENDER :: M CC PASSAGE :: Original CC LOCATION :: United States / Maryland CC COLLECT_DATE :: 28-Dec-2019 CC Lineage :: A(H1N1)pdm09 CC SPECIMEN_ID :: A19143128 ORIGINAL CC SENDER_LAB :: Maryland Department of Health and Mental CC Hygiene CC SEQLAB_SAMPLE_ID :: 3026054655 CC EPI_SEQUENCE_ID :: EPI1684627 CC ##FluData-END## XX FH Key Location/Qualifiers FH FT source 1..2208 FT /organism="Influenza A virus" FT /segment="3" FT /host="Homo sapiens" FT /strain="A/Maryland/48/2019" FT /serotype="H1N1" FT /mol_type="viral cRNA" FT /country="USA:Maryland" FT /collection_date="28-Dec-2019" FT /db_xref="taxon:11320" FT gene 13..2163 FT /gene="PA" FT CDS 13..2163 FT /codon_start=1 FT /gene="PA" FT /product="polymerase PA" FT /protein_id="QIJ23582.1" FT /translation="MEDFVRQCFNPMIVELAEKAMKEYGEDPKIETNKFAAICTHLEVC FT FMYSDFHFIDERGESIIVESGDPNALLKHRFEIIEGRDRIMAWTVVNSICNTTGIEKPK FT LLPDLYDYKENRFIEIGVTRREVHIYYLEKANKIKSEKTHIHIFSFTGEEMATKADYTL FT DEESRARIKTRLFTIRQEMASRSLWDSFRQSERGEETIEEKFEITGTMRKLADQSLPPN FT FSSLENFRAYVDGFEPNGCIEGKLSQMSKEVNAKIEPFLRTTPRPLRLPDGPLCHQRSK FT FLLMDALKLSIEDPSHEGEGIPLYDAIKCMKTFFGWKEPKIVKPHEKGVNPNYLMAWKQ FT VLAELQDIENEEKIPRTKNMKKTSQLKWALGENMAPEKVDFDDCKDVGDLKQYDSDEPE FT PRSLASWVQNEFNKACELTDSSWIELDEIGEDVAPIEHIASMRRNYFTAEVSHCRATEY FT IMKGVYINTALLNASCAAMDDFQLIPMISKCRTKEGRRKTNLYGFIIKGRSHLRNDTDV FT VNFVSMEFSLTDPRLEPHKWEKYCVLEIGDMLLRTAIGQVSRPMFLYVRTNGTSKIKMK FT WGMEMRRCLLQSLQQIESMIEAESSVKEKDMTKEFFENKSETWPIGESPRGVEEGSIGK FT VCRTLLAKSVFNSLYASPQLEGFSAESRKLLLIVQALRDNLEPGTFDLGGLYEAIEECL FT INDPWVLLNASWFNSFLTHALK" FT gene 13..712 FT /gene="PA-X" FT CDS join(13..582,584..712) FT /codon_start=1 FT /ribosomal_slippage FT /gene="PA-X" FT /product="PA-X protein" FT /protein_id="QIJ23583.1" FT /translation="MEDFVRQCFNPMIVELAEKAMKEYGEDPKIETNKFAAICTHLEVC FT FMYSDFHFIDERGESIIVESGDPNALLKHRFEIIEGRDRIMAWTVVNSICNTTGIEKPK FT LLPDLYDYKENRFIEIGVTRREVHIYYLEKANKIKSEKTHIHIFSFTGEEMATKADYTL FT DEESRARIKTRLFTIRQEMASRSLWDSFVSPKEAKKQLKKSLKLQELCASLPTKVSHQT FT SPALKTSEPM" XX SQ Sequence 2208 BP; 744 A; 419 C; 515 G; 530 T; 0 other; tactgatcca aaatggaaga ctttgtgcga caatgcttca atccaatgat cgtcgagctt 60 gcggaaaagg caatgaaaga atatggggaa gaccccaaaa ttgaaactaa taagtttgct 120 gcaatttgca cacatttgga agtttgtttc atgtattcgg atttccattt cattgatgaa 180 cggggtgaat caataattgt agaatctggt gacccaaatg cactattgaa gcaccgattt 240 gagataattg aaggaagaga ccgaatcatg gcttggacag tggtgaacag tatatgtaac 300 acaacaggga tagagaagcc taaacttctt cctgatttgt atgattacaa agagaaccgg 360 ttcattgaaa ttggagtaac acggagagaa gttcacatat attacctaga gaaagccaac 420 aaaataaaat ctgaaaagac acacattcac atcttttcat tcactggaga ggagatggcc 480 accaaagcgg actacactct tgacgaagaa agcagagcaa gaatcaaaac taggcttttc 540 actataagac aagaaatggc cagtaggagt ctatgggatt cctttcgtca gtccgaaaga 600 ggcgaagaaa caattgaaga aaagtttgaa attacaggaa ctatgcgcaa gcttgccgac 660 caaagtctcc caccaaactt ctccagcctt gaaaacttca gagcctatgt agatggattc 720 gagccgaatg gctgcattga gggcaagctt tcccaaatgt caaaagaagt gaacgccaaa 780 attgaaccat tcttgaggac gacaccacgc cctctcagat tacctgatgg acctctttgc 840 catcagcggt caaagttcct gctgatggat gctctgaaat taagcattga agacccgagt 900 cacgaggggg aaggaatacc actatatgat gcaatcaaat gcatgaagac attctttggc 960 tggaaagagc ctaaaatagt caaaccacat gagaaaggcg taaatcccaa ttacctcatg 1020 gcttggaagc aggtgctagc agagctacag gacattgaaa atgaagagaa aatcccaagg 1080 acaaagaaca tgaagaaaac aagccaattg aagtgggcac tcggtgaaaa tatggcacct 1140 gaaaaagtgg actttgatga ctgtaaagat gttggagacc ttaaacagta tgacagtgat 1200 gagccagagc ccagatctct agcaagctgg gtccaaaatg aattcaataa ggcatgtgaa 1260 ttgactgatt caagctggat agaacttgat gaaataggag aagatgttgc cccaattgaa 1320 catatagcaa gcatgaggag gaactatttt acagcagaag tgtcccactg cagggctact 1380 gaatacataa tgaagggagt gtacataaat acggccttgc ttaatgcatc ctgtgcagcc 1440 atggatgact ttcagctgat tccaatgata agcaaatgta ggaccaaaga aggaagacgg 1500 aaaacaaacc tttatgggtt cattataaaa ggaaggtctc atttgagaaa tgatactgat 1560 gtggtgaact ttgtaagtat ggagttctca ctcactgatc caagactgga accacacaaa 1620 tgggaaaaat actgtgttct tgaaatagga gacatgctat tgaggactgc gataggtcaa 1680 gtgtcgaggc ccatgttcct atatgtgaga accaatggaa cctccaagat caagatgaaa 1740 tggggcatgg aaatgaggcg ctgccttctt caatctcttc aacagattga gagcatgatt 1800 gaagccgagt cttctgtcaa agagaaagac atgaccaagg aattctttga aaacaaatcg 1860 gaaacatggc caatcggaga gtcacccagg ggagtggagg aaggctctat tggaaaagtg 1920 tgcagaacct tactggcaaa atctgtgttc aacagtctat atgcttctcc acaacttgag 1980 gggttttcgg ctgaatcaag aaaattgctt ctcattgttc aggcacttag ggacaacctg 2040 gaacctggaa cctttgatct tggggggcta tatgaagcaa tcgaggagtg cttgattaat 2100 gatccctggg ttttgcttaa tgcatcttgg ttcaactcct tcctcacaca tgcactgaag 2160 tagttgtggc aatgctacta tttgctatcc atattgtcca aaaaagta 2208 // ID MT167122; SV 1; linear; viral cRNA; STD; VRL; 1752 BP. XX AC MT167122; XX PR Project:PRJNA37813; XX DT 17-MAR-2020 (Rel. 144, Created) DT 17-MAR-2020 (Rel. 144, Last updated, Version 1) XX DE Influenza A virus (A/Maryland/48/2019(H1N1)) segment 4 hemagglutinin (HA) DE gene, complete cds. XX KW . XX OS Influenza A virus OC Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Insthoviricetes; OC Articulavirales; Orthomyxoviridae; Alphainfluenzavirus. XX RN [1] RP 1-1752 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT "Influenza Sequencing Activity group"; RL Unpublished. XX RN [2] RP 1-1752 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT ; RL Submitted (09-MAR-2020) to the INSDC. RL WHO Collaborating Center for Surveillance, Epidemiology and Control of RL Influenza, Influenza Division, Centers for Disease Control and Prevention, RL 1600 Clifton Road, N.E., Atlanta, GA 30333, USA XX DR MD5; 13889976a21e1607330156efe93ebac9. XX CC ##FluData-START## CC EPI_ISOLATE_ID :: EPI_ISL_409223 CC NAME :: A/Maryland/48/2019 CC TYPE :: H1N1 CC Segment_name :: HA CC HOST_AGE :: 1 CC HOST_GENDER :: M CC PASSAGE :: Original CC LOCATION :: United States / Maryland CC COLLECT_DATE :: 28-Dec-2019 CC Lineage :: A(H1N1)pdm09 CC SPECIMEN_ID :: A19143128 ORIGINAL CC SENDER_LAB :: Maryland Department of Health and Mental CC Hygiene CC SEQLAB_SAMPLE_ID :: 3026054655 CC EPI_SEQUENCE_ID :: EPI1684630 CC ##FluData-END## XX FH Key Location/Qualifiers FH FT source 1..1752 FT /organism="Influenza A virus" FT /segment="4" FT /host="Homo sapiens" FT /strain="A/Maryland/48/2019" FT /serotype="H1N1" FT /mol_type="viral cRNA" FT /country="USA:Maryland" FT /collection_date="28-Dec-2019" FT /db_xref="taxon:11320" FT gene 21..1721 FT /gene="HA" FT CDS 21..1721 FT /codon_start=1 FT /gene="HA" FT /product="hemagglutinin" FT /function="receptor binding and fusion protein" FT /protein_id="QIJ23584.1" FT /translation="MKAILVVLLYTFTTANADTLCIGYHANNSTDTVDTVLEKNVTVTH FT SVNLLEDKHNGKLCKLRGVAPLHLGKCNIAGWILGNPECESLSTARSWSYIVETSNSDN FT GTCYPGDFINYEELREQLSSVSSFERFEIFPKTSSWPNHDSDKGVTAACPHAGAKSFYK FT NLIWLVKKGNSYPKLNQTYINDKGKEILVLWGIHHPPTIAAQESLYQNADAYVFVGTSR FT YSKKFKPEIATRPKVRDQEGRMNYYWTLVEPGDKITFEATGNLVVPRYAFTMERDAGSG FT IIISDTPVHDCNTTCQTPEGAINTSLPFQNVHPITIGKCPKYVKSTKLRLATGLRNVPS FT IQSRGLFGAIAGFIEGGWTGMVDGWYGYHHQNEQGSGYAADLKSTQNAIDKITNKVNSV FT IEKMNTQFTAVGKEFNHLEKRIENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSN FT VKNLYEKVRNQLKNNAKEIGNGCFEFYHKCDNTCMESVKNGTYDYPKYSEEAKLNREKI FT DGVKLESTRIYQILAIYSTVASSLVLVVSLGAISFWMCSNGSLQCRICI" FT sig_peptide 21..71 FT /gene="HA" FT mat_peptide 72..1052 FT /gene="HA" FT /product="HA1" FT mat_peptide 1053..1718 FT /gene="HA" FT /product="HA2" XX SQ Sequence 1752 BP; 631 A; 327 C; 384 G; 410 T; 0 other; ggaaaacaaa agcaacaaaa atgaaggcaa tactagtagt tctgctgtat acatttacaa 60 ccgcaaatgc agacacatta tgtataggtt atcatgcgaa caattcaaca gacactgtag 120 acacagtact agaaaagaat gtaacagtaa cacactctgt caatcttctg gaagacaagc 180 ataacggaaa actatgcaaa ctaagagggg tagccccatt gcatttgggt aaatgtaaca 240 ttgctggctg gatcctggga aatccagagt gtgaatcact ctccacagca agatcatggt 300 cctacattgt ggaaacatct aattcagaca atggaacgtg ttacccagga gatttcatca 360 attatgagga gctaagagag caattgagct cagtgtcatc atttgaaagg tttgaaatat 420 tccccaagac aagttcatgg cctaatcatg actcggacaa aggtgtaacg gcagcatgtc 480 ctcacgctgg agcaaaaagc ttctacaaaa acttgatatg gctggttaaa aaaggaaatt 540 catacccaaa gctcaaccaa acctacatta atgataaagg gaaagaaatc ctcgtgctgt 600 ggggcattca ccatccacct actattgctg cccaagaaag tctctatcag aatgcagatg 660 catatgtttt tgtggggaca tcaagataca gcaagaagtt caagccggaa atagcaacaa 720 gacccaaagt gagggatcaa gaagggagaa tgaactatta ctggacacta gtagaaccgg 780 gagacaaaat aacattcgaa gcaactggaa atctagtggt accgagatat gcattcacaa 840 tggaaagaga tgctggatct ggcattatca tttcagatac accagtccac gattgcaata 900 caacttgtca gacacccgag ggtgctataa acaccagcct tccatttcag aatgtacatc 960 cgattacaat tgggaaatgt ccaaagtatg taaaaagcac aaaattgaga ctggccacag 1020 gattgaggaa tgtcccgtct attcaatcta gaggcctatt cggggccatt gctggcttca 1080 ttgaaggggg gtggacaggg atggtagatg gatggtacgg ttatcaccat caaaatgagc 1140 aggggtcagg atatgcagcc gatctgaaga gcacacaaaa tgccattgat aagattacta 1200 acaaagtaaa ttctgttata gaaaagatga atacacagtt cacagcagtg ggtaaagagt 1260 tcaaccacct tgaaaaaaga atagagaatc taaataaaaa agttgatgat ggtttcctgg 1320 acatttggac ttacaatgcc gaactgttgg ttctactgga aaacgaaaga actttggact 1380 atcacgattc aaatgtgaag aacttgtatg aaaaagtaag aaaccagtta aaaaacaatg 1440 ccaaggaaat tggaaacggc tgctttgaat tttaccacaa atgcgacaac acatgcatgg 1500 aaagtgtcaa gaatgggact tatgactacc caaaatactc agaggaagca aaattaaaca 1560 gagaaaaaat agatggagta aagctggaat caacaaggat ctaccagatt ttggcgatct 1620 attcaactgt tgccagttca ttggtactgg tagtctccct gggggcaatc agcttctgga 1680 tgtgctctaa tgggtctcta cagtgtagaa tatgtattta acattaggat ttcagaatca 1740 tgagaaaaac ac 1752 // ID MT167123; SV 1; linear; viral cRNA; STD; VRL; 1540 BP. XX AC MT167123; XX PR Project:PRJNA37813; XX DT 17-MAR-2020 (Rel. 144, Created) DT 17-MAR-2020 (Rel. 144, Last updated, Version 1) XX DE Influenza A virus (A/Maryland/48/2019(H1N1)) segment 5 nucleocapsid protein DE (NP) gene, complete cds. XX KW . XX OS Influenza A virus OC Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Insthoviricetes; OC Articulavirales; Orthomyxoviridae; Alphainfluenzavirus. XX RN [1] RP 1-1540 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT "Influenza Sequencing Activity group"; RL Unpublished. XX RN [2] RP 1-1540 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT ; RL Submitted (09-MAR-2020) to the INSDC. RL WHO Collaborating Center for Surveillance, Epidemiology and Control of RL Influenza, Influenza Division, Centers for Disease Control and Prevention, RL 1600 Clifton Road, N.E., Atlanta, GA 30333, USA XX DR MD5; bb886fe2e740a1800a8d5316555294b0. XX CC ##FluData-START## CC EPI_ISOLATE_ID :: EPI_ISL_409223 CC NAME :: A/Maryland/48/2019 CC TYPE :: H1N1 CC Segment_name :: NP CC HOST_AGE :: 1 CC HOST_GENDER :: M CC PASSAGE :: Original CC LOCATION :: United States / Maryland CC COLLECT_DATE :: 28-Dec-2019 CC Lineage :: A(H1N1)pdm09 CC SPECIMEN_ID :: A19143128 ORIGINAL CC SENDER_LAB :: Maryland Department of Health and Mental CC Hygiene CC SEQLAB_SAMPLE_ID :: 3026054655 CC EPI_SEQUENCE_ID :: EPI1684624 CC ##FluData-END## XX FH Key Location/Qualifiers FH FT source 1..1540 FT /organism="Influenza A virus" FT /segment="5" FT /host="Homo sapiens" FT /strain="A/Maryland/48/2019" FT /serotype="H1N1" FT /mol_type="viral cRNA" FT /country="USA:Maryland" FT /collection_date="28-Dec-2019" FT /db_xref="taxon:11320" FT gene 34..1530 FT /gene="NP" FT CDS 34..1530 FT /codon_start=1 FT /gene="NP" FT /product="nucleocapsid protein" FT /protein_id="QIJ23585.1" FT /translation="MASQGTKRSYEQMETGGERQDTTEIRASVGRMIGGIGRFYIQMCT FT ELKLSDYDGRLIQNSITIERMVLSSFDERRNKYLEEHPSAGKDPKKTGGPIYRRIDGKW FT TRELILYDKEEIRRVWRQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRM FT CSLMQGSTLPRRSGAAGAAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTRVAYERM FT CNILKGKFQTAAQRAMMDQVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVY FT GLAVASGHDFEREGYSLVGIDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFED FT LRVSSFIRGKKVIPRGKLSTRGVQIASNENVETMDSNTLELRSRYWAIRTRSGGNTNQQ FT KASAGQISVQPTFSVQRNLPFERATIMAAFSGNNEGRTSDMRTEIIRMMESAKPEDLSF FT QGRGVFELSDEKATNPIVPSFDMSNEGSYFFGDNAEEYDN" XX SQ Sequence 1540 BP; 527 A; 296 C; 391 G; 326 T; 0 other; gtagataatc actcaatgag tgacatcgaa gccatggcgt ctcaaggcac caaacgatca 60 tatgaacaaa tggagactgg tggggagcgc caggatacca cagaaatcag agcatctgtt 120 ggaagaatga ttggtggaat cgggagattc tacatccaaa tgtgcactga actaaaactc 180 agtgattatg atggacgact aatccagaac agcataacaa tagagaggat ggtgctttct 240 tcttttgatg agagaagaaa taaataccta gaagagcatc caagtgctgg gaaggaccct 300 aagaaaacag gaggacccat ctatagaaga atagacggaa aatggacaag agaactcatc 360 ctttatgaca aagaagaaat aaggagagtt tggcgccaag caaacaatgg cgaagatgca 420 acagcaggtc ttactcatat catgatttgg cattccaatc tgaatgatgc cacatatcag 480 aggacaagag cacttgttcg cactggaatg gatcccagaa tgtgctctct aatgcaaggt 540 tcaacacttc ccagaaggtc tggtgccgca ggtgctgcag taaaaggagt tggaacaata 600 gctatggagt taatcagaat gataaaacgt ggaatcaatg accgaaattt ctggaggggt 660 gaaaatggaa gaaggacaag agttgcttat gaaagaatgt gcaatatcct caaaggaaaa 720 tttcaaacag ctgcccagag ggcaatgatg gatcaagtaa gagaaagtcg aaacccagga 780 aacgctgaga ttgaagacct cattttcctg gcacggtcag cactcattct gagaggatca 840 gttgcacata aatcctgcct gcctgcttgt gtgtatgggc ttgcagtagc aagtggccat 900 gactttgaaa gggaagggta ctcactggtc gggatagacc cattcaaatt actccaaaac 960 agtcaagtgg tcagcctgat gagaccaaat gaaaatccag ctcacaagag tcaattggta 1020 tggatggcat gccactctgc tgcatttgaa gatttaagag tatcaagttt cataagagga 1080 aagaaagtga tcccaagagg aaagctttcc acaagagggg ttcagattgc ttcaaatgag 1140 aatgtggaaa ccatggactc caataccctg gaactaagaa gcagatactg ggccataaga 1200 accaggagtg gaggaaatac caatcaacag aaggcatctg caggccagat cagtgtgcag 1260 cctacattct cagtgcagcg aaatctccct tttgaaagag caaccattat ggcagcattc 1320 agcgggaaca atgaaggacg gacatccgac atgcgaacag aaattataag aatgatggaa 1380 agtgcaaagc cagaggattt gtccttccag gggcggggag tcttcgagct ctcggacgaa 1440 aaggcaacga acccgatcgt gccttccttt gacatgagta atgaagggtc ttatttcttc 1500 ggagacaatg cagaggagta tgacaattga agaaaaatac 1540 // ID MT167124; SV 1; linear; viral cRNA; STD; VRL; 1433 BP. XX AC MT167124; XX PR Project:PRJNA37813; XX DT 17-MAR-2020 (Rel. 144, Created) DT 17-MAR-2020 (Rel. 144, Last updated, Version 1) XX DE Influenza A virus (A/Maryland/48/2019(H1N1)) segment 6 neuraminidase (NA) DE gene, complete cds. XX KW . XX OS Influenza A virus OC Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Insthoviricetes; OC Articulavirales; Orthomyxoviridae; Alphainfluenzavirus. XX RN [1] RP 1-1433 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT "Influenza Sequencing Activity group"; RL Unpublished. XX RN [2] RP 1-1433 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT ; RL Submitted (09-MAR-2020) to the INSDC. RL WHO Collaborating Center for Surveillance, Epidemiology and Control of RL Influenza, Influenza Division, Centers for Disease Control and Prevention, RL 1600 Clifton Road, N.E., Atlanta, GA 30333, USA XX DR MD5; 7a02cdeee12d225cc1cb9cc9870c7d3d. XX CC ##FluData-START## CC EPI_ISOLATE_ID :: EPI_ISL_409223 CC NAME :: A/Maryland/48/2019 CC TYPE :: H1N1 CC Segment_name :: NA CC HOST_AGE :: 1 CC HOST_GENDER :: M CC PASSAGE :: Original CC LOCATION :: United States / Maryland CC COLLECT_DATE :: 28-Dec-2019 CC Lineage :: A(H1N1)pdm09 CC SPECIMEN_ID :: A19143128 ORIGINAL CC SENDER_LAB :: Maryland Department of Health and Mental CC Hygiene CC SEQLAB_SAMPLE_ID :: 3026054655 CC EPI_SEQUENCE_ID :: EPI1684629 CC ##FluData-END## XX FH Key Location/Qualifiers FH FT source 1..1433 FT /organism="Influenza A virus" FT /segment="6" FT /host="Homo sapiens" FT /strain="A/Maryland/48/2019" FT /serotype="H1N1" FT /mol_type="viral cRNA" FT /country="USA:Maryland" FT /collection_date="28-Dec-2019" FT /db_xref="taxon:11320" FT gene 9..1418 FT /gene="NA" FT CDS 9..1418 FT /codon_start=1 FT /gene="NA" FT /product="neuraminidase" FT /protein_id="QIJ23586.1" FT /translation="MNPNQKIITIGSICMTIGMANLILQIGNIISIWVSHSIQIGNQSQ FT IETCNKNVITYENNTWVNQTYVNISNTNSAARQSVASVKLAGNSSLCPVSGWAIYSKDN FT SVRIGSKGDVFVIREPFISCSPLECRTFFLTQGALLNDKHSNGTIKDRSPYRTLMSCPI FT GEVPSPYNSRFESVAWSASACHDGTNWLTIGISGPDSGAVAVLKYNGIITDTIKSWRNN FT ILRTQESECACVNGSCFTIMTDGPSDGQASYKIFRIEKGKIIKSVEMKAPNYHYEECSC FT YPDSSEITCVCRDNWHGSNRPWVSFNQNLEYQMGYICSGVFGDNPRPNDKTGSCGPVSS FT NGANGVKGFSFKYGNGVWIGRTKSISSRKGFEMIWDPNGWTGTDNKFSKKQDIVGINEW FT SGYSGSFVQHPELTGLNCIRPCFWVELIRGRPEENTIWTSGSSISFCGVDSDIVGWSWP FT DGAELPFTIDK" XX SQ Sequence 1433 BP; 465 A; 266 C; 332 G; 370 T; 0 other; agtttaaaat gaatccaaac caaaagataa taaccattgg ctctatctgt atgacaattg 60 gaatggctaa cttaatatta caaattggaa acataatctc aatatgggtt agccactcaa 120 ttcaaattgg aaatcaaagc cagattgaaa catgcaataa aaacgtcatc acttatgaaa 180 acaacacttg ggtaaatcag acatatgtta acatcagcaa caccaactct gctgctagac 240 agtcagtggc ttccgtgaaa ttagcgggca attcctctct ctgccctgtc agtggatggg 300 ctatatacag taaagacaac agtgtaagaa tcggttccaa gggggatgtg tttgtcataa 360 gggaaccatt catatcatgc tctcccttgg aatgcagaac cttcttcttg actcaagggg 420 ctttgctaaa tgacaaacac tccaatggaa ccattaaaga cagaagccca tatcgaaccc 480 taatgagctg tcctattggt gaagttccct ctccatacaa ctcaagattt gagtcagtcg 540 cttggtcagc aagtgcttgt catgatggca ccaattggct aacaattgga atttctggcc 600 cagacagtgg ggcagtggct gtgttaaaat acaatggcat aataacagac actatcaaga 660 gttggaggaa caatatattg agaacacaag agtctgaatg tgcatgtgta aatggttctt 720 gctttaccat aatgaccgat ggaccaagtg atggacaggc ctcatacaaa atcttcagaa 780 tagaaaaggg aaagataatc aaatcagtcg aaatgaaagc ccctaattat cactatgagg 840 aatgctcctg ttaccctgat tctagtgaaa tcacatgtgt gtgcagggat aactggcatg 900 gctcgaatcg accgtgggtg tctttcaacc agaatctgga ataccagatg ggatacatat 960 gcagtggggt tttcggagac aatccacgcc ctaatgataa gacaggcagt tgtggtccag 1020 tatcgtctaa tggagcaaat ggggtaaaag gattttcatt caaatacggc aatggtgttt 1080 ggatagggag aactaagagc attagttcaa gaaaaggttt tgagatgatt tgggatccga 1140 atggatggac tgggactgac aataaattct caaaaaagca agatatcgta ggaataaatg 1200 agtggtcagg gtatagcggg agttttgttc agcatccaga actaacaggg ctgaattgta 1260 taagaccttg cttctgggtt gaactaataa gaggacgacc cgaagagaac acaatctgga 1320 ctagcgggag cagcatatcc ttttgtggtg tagacagtga cattgtgggt tggtcttggc 1380 cagacggtgc tgagttgcca tttaccattg acaagtaatt tgttcaaaaa act 1433 // ID MT167125; SV 1; linear; viral cRNA; STD; VRL; 1002 BP. XX AC MT167125; XX PR Project:PRJNA37813; XX DT 17-MAR-2020 (Rel. 144, Created) DT 17-MAR-2020 (Rel. 144, Last updated, Version 1) XX DE Influenza A virus (A/Maryland/48/2019(H1N1)) segment 7 matrix protein 2 DE (M2) and matrix protein 1 (M1) genes, complete cds. XX KW . XX OS Influenza A virus OC Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Insthoviricetes; OC Articulavirales; Orthomyxoviridae; Alphainfluenzavirus. XX RN [1] RP 1-1002 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT "Influenza Sequencing Activity group"; RL Unpublished. XX RN [2] RP 1-1002 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT ; RL Submitted (09-MAR-2020) to the INSDC. RL WHO Collaborating Center for Surveillance, Epidemiology and Control of RL Influenza, Influenza Division, Centers for Disease Control and Prevention, RL 1600 Clifton Road, N.E., Atlanta, GA 30333, USA XX DR MD5; ec7869fb11eb504b453deba40ad128c0. XX CC ##FluData-START## CC EPI_ISOLATE_ID :: EPI_ISL_409223 CC NAME :: A/Maryland/48/2019 CC TYPE :: H1N1 CC Segment_name :: M CC HOST_AGE :: 1 CC HOST_GENDER :: M CC PASSAGE :: Original CC LOCATION :: United States / Maryland CC COLLECT_DATE :: 28-Dec-2019 CC Lineage :: A(H1N1)pdm09 CC SPECIMEN_ID :: A19143128 ORIGINAL CC SENDER_LAB :: Maryland Department of Health and Mental CC Hygiene CC SEQLAB_SAMPLE_ID :: 3026054655 CC EPI_SEQUENCE_ID :: EPI1684626 CC ##FluData-END## XX FH Key Location/Qualifiers FH FT source 1..1002 FT /organism="Influenza A virus" FT /segment="7" FT /host="Homo sapiens" FT /strain="A/Maryland/48/2019" FT /serotype="H1N1" FT /mol_type="viral cRNA" FT /country="USA:Maryland" FT /collection_date="28-Dec-2019" FT /db_xref="taxon:11320" FT gene 14..995 FT /gene="M2" FT CDS join(14..39,728..995) FT /codon_start=1 FT /gene="M2" FT /product="matrix protein 2" FT /protein_id="QIJ23588.1" FT /translation="MSLLTEVETPTRSEWECRCSGSNDPLVIAANIIGILHLILWITDR FT LFFKCIYRRFKYGLKRGPSTEGVPDSMREEYQQEQHSAVDVDDGHFVNIELE" FT gene 14..772 FT /gene="M1" FT CDS 14..772 FT /codon_start=1 FT /gene="M1" FT /product="matrix protein 1" FT /protein_id="QIJ23587.1" FT /translation="MSLLTEVETYVLSIIPSGPLKAEIAQRLESVFAGKNTDLEALMEW FT LKTRPILSPLTKGILGFVFTLTVPSERGLQRRRFIQNALNGNGDPNNMDRAVKLYKKLK FT REITFHGAKEVSLSYSTGALASCMGLIYNRMGTVTTEAAFGLVCATCEQIADSQHRSHR FT QMATTTNPLIRHENRMVLASTTAKAMEQVAGSSEQAAEAMEIANKTRQMVHAMRTIGTH FT PSSSAGLRDDLLENLQAYQKRMGVQMQRFK" XX SQ Sequence 1002 BP; 303 A; 210 C; 249 G; 240 T; 0 other; tagatgttta aagatgagtc ttctaaccga ggtcgaaacg tacgttcttt ctatcatccc 60 gtcaggcccc ctcaaagccg agatcgcaca gagactggaa agtgtctttg caggaaagaa 120 cacagatctt gaggctctca tggaatggct aaagacaaga ccaatcttgt cacctctgac 180 taagggaatt ttaggatttg tgttcacgct caccgtgccc agtgagcgag gactgcagcg 240 tagacgcttt atccaaaatg ccctaaatgg aaatggggac ccgaacaaca tggatagagc 300 agttaaacta tacaagaaac tcaaaagaga aataacgttc catggggcca aggaggtgtc 360 actaagctat tcaactggtg cacttgcaag ttgcatgggc ctcatataca acaggatggg 420 aacagtgacc acagaagctg ctttcggtct agtttgtgcc acttgtgaac agattgctga 480 ttcacagcat cggtctcaca gacaaatggc tactaccaca aacccactaa tcaggcatga 540 aaacagaatg gtgctggcta gcactacggc aaaggctatg gaacaggtgg ctggatcgag 600 tgaacaggca gcggaggcca tggagattgc taataagact aggcagatgg tacatgcaat 660 gagaactatt ggaactcatc ctagctccag tgctggtcta agagatgacc ttcttgaaaa 720 tttgcaggcc taccagaagc gaatgggagt gcagatgcag cggttcaaat gatcctctcg 780 tcattgcagc aaacatcatt gggatcttgc acctgatatt gtggattact gatcgtcttt 840 ttttcaaatg catttatcgt cgctttaaat acggtttgaa aagagggcct tctacggaag 900 gagtgcctga ttccatgagg gaagaatatc aacaggagca gcatagtgct gtagatgttg 960 acgatggtca ttttgtcaac atagagctag agtaaaaaac ta 1002 // ID MT167126; SV 1; linear; viral cRNA; STD; VRL; 865 BP. XX AC MT167126; XX PR Project:PRJNA37813; XX DT 17-MAR-2020 (Rel. 144, Created) DT 17-MAR-2020 (Rel. 144, Last updated, Version 1) XX DE Influenza A virus (A/Maryland/48/2019(H1N1)) segment 8 nuclear export DE protein (NEP) and nonstructural protein 1 (NS1) genes, complete cds. XX KW . XX OS Influenza A virus OC Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Insthoviricetes; OC Articulavirales; Orthomyxoviridae; Alphainfluenzavirus. XX RN [1] RP 1-865 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT "Influenza Sequencing Activity group"; RL Unpublished. XX RN [2] RP 1-865 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT ; RL Submitted (09-MAR-2020) to the INSDC. RL WHO Collaborating Center for Surveillance, Epidemiology and Control of RL Influenza, Influenza Division, Centers for Disease Control and Prevention, RL 1600 Clifton Road, N.E., Atlanta, GA 30333, USA XX DR MD5; cb9fc653cb048a0a35042b9cd64b01c3. XX CC ##FluData-START## CC EPI_ISOLATE_ID :: EPI_ISL_409223 CC NAME :: A/Maryland/48/2019 CC TYPE :: H1N1 CC Segment_name :: NS CC HOST_AGE :: 1 CC HOST_GENDER :: M CC PASSAGE :: Original CC LOCATION :: United States / Maryland CC COLLECT_DATE :: 28-Dec-2019 CC Lineage :: A(H1N1)pdm09 CC SPECIMEN_ID :: A19143128 ORIGINAL CC SENDER_LAB :: Maryland Department of Health and Mental CC Hygiene CC SEQLAB_SAMPLE_ID :: 3026054655 CC EPI_SEQUENCE_ID :: EPI1684625 CC ##FluData-END## XX FH Key Location/Qualifiers FH FT source 1..865 FT /organism="Influenza A virus" FT /segment="8" FT /host="Homo sapiens" FT /strain="A/Maryland/48/2019" FT /serotype="H1N1" FT /mol_type="viral cRNA" FT /country="USA:Maryland" FT /collection_date="28-Dec-2019" FT /db_xref="taxon:11320" FT gene 15..852 FT /gene="NEP" FT /gene_synonym="NS2" FT CDS join(15..44,517..852) FT /codon_start=1 FT /gene="NEP" FT /gene_synonym="NS2" FT /product="nuclear export protein" FT /note="nonstructural protein 2" FT /protein_id="QIJ23590.1" FT /translation="MESNTMSSFQDILMRMSKMQLGSSSEDLSGMVTRFESLKIYRDSL FT GEAVMRMGDLHYLQSRNEKWREQLGQKFEEIRWLIEEIRHRLKATENSFEQITFMQALQ FT LLLEVEQEIRAFSFQLI" FT gene 15..674 FT /gene="NS1" FT CDS 15..674 FT /codon_start=1 FT /gene="NS1" FT /product="nonstructural protein 1" FT /protein_id="QIJ23589.1" FT /translation="MESNTMSSFQVDCFLWHIRKRFADNGLGDAPFLDRLRRDQKSLKG FT RGNTLGLDIKTATLVGKQIVEWILKEESSETLRMAIASVPTSRYISDMTLEEMSRDWFM FT LMPRQKIIGPLCVRLDQAVMDKNIVLEANFSVIFNRLETLILLRAFTEEGTIVGEISPL FT PSLPGHTYEDVKNAVGVLIGGLEWNGNTVRVSENIQRFAWRSCDENGRPSLPTEQK" XX SQ Sequence 865 BP; 282 A; 163 C; 205 G; 215 T; 0 other; gtgacaaaaa cataatggaa tccaacacca tgtcaagctt tcaggtagac tgttttcttt 60 ggcatattcg caagcgattt gcagacaatg gattgggtga tgccccattc cttgatcggc 120 tacgccgaga tcaaaagtca ttaaaaggaa gaggcaacac ccttggcctc gacatcaaaa 180 cagccactct tgttgggaaa caaattgtgg aatggatttt gaaagaggaa tccagcgaga 240 cacttagaat ggcaattgca tctgtaccta cttcgcgtta catttctgac atgaccctcg 300 aggaaatgtc acgagactgg ttcatgctta tgcctaggca aaagataata ggccctcttt 360 gcgtgcgatt ggaccaggcg gtcatggata agaacatagt actggaagca aacttcagtg 420 taatcttcaa ccgattagag accttgatac tactaagggc tttcactgag gagggaacaa 480 tagttggaga aatttcacca ttaccttctc ttccaggaca tacttatgag gatgtcaaaa 540 atgcagttgg ggtcctcatc ggaggacttg agtggaatgg taacacggtt cgagtctctg 600 aaaatataca gagattcgct tggagaagct gtgatgagaa tgggagacct tcactaccta 660 cagagcagaa atgagaagtg gcgggaacaa ttgggacaga aatttgagga aataaggtgg 720 ttaattgaag aaatacgaca cagattgaaa gcgacagaga atagtttcga acaaataaca 780 tttatgcaag ccttacaact actgcttgaa gtagagcaag agataagagc tttctcgttt 840 cagcttattt aatgataaaa aacac 865 // ID MT167127; SV 1; linear; viral cRNA; STD; VRL; 2316 BP. XX AC MT167127; XX PR Project:PRJNA37813; XX DT 17-MAR-2020 (Rel. 144, Created) DT 17-MAR-2020 (Rel. 144, Last updated, Version 1) XX DE Influenza A virus (A/Arkansas/33/2019(H1N1)) segment 2 polymerase PB1 (PB1) DE gene, complete cds; and nonfunctional PB1-F2 protein (PB1-F2) gene, DE complete sequence. XX KW . XX OS Influenza A virus OC Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Insthoviricetes; OC Articulavirales; Orthomyxoviridae; Alphainfluenzavirus. XX RN [1] RP 1-2316 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT "Influenza Sequencing Activity group"; RL Unpublished. XX RN [2] RP 1-2316 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT ; RL Submitted (09-MAR-2020) to the INSDC. RL WHO Collaborating Center for Surveillance, Epidemiology and Control of RL Influenza, Influenza Division, Centers for Disease Control and Prevention, RL 1600 Clifton Road, N.E., Atlanta, GA 30333, USA XX DR MD5; dc0d07ccd59251ea13d0c56eb3d96919. XX CC ##FluData-START## CC EPI_ISOLATE_ID :: EPI_ISL_409175 CC NAME :: A/Arkansas/33/2019 CC TYPE :: H1N1 CC Segment_name :: PB1 CC HOST_AGE :: 51 CC HOST_GENDER :: M CC PASSAGE :: Original CC LOCATION :: United States / Arkansas CC COLLECT_DATE :: 31-Dec-2019 CC Lineage :: A(H1N1)pdm09 CC RESIST_TO_OSELTAMIVIR :: Sensitive CC RESIST_TO_ZANAMVIR :: Sensitive CC SPECIMEN_ID :: 1933800000-114 ORIGINAL CC SENDER_LAB :: Arkansas Department of Health CC SEQLAB_SAMPLE_ID :: 3026054560 CC EPI_SEQUENCE_ID :: EPI1684251 CC ##FluData-END## XX FH Key Location/Qualifiers FH FT source 1..2316 FT /organism="Influenza A virus" FT /segment="2" FT /host="Homo sapiens" FT /strain="A/Arkansas/33/2019" FT /serotype="H1N1" FT /mol_type="viral cRNA" FT /country="USA:Arkansas" FT /collection_date="31-Dec-2019" FT /db_xref="taxon:11320" FT gene 13..2286 FT /gene="PB1" FT CDS 13..2286 FT /codon_start=1 FT /gene="PB1" FT /product="polymerase PB1" FT /protein_id="QIJ23591.1" FT /translation="MDVNPTLLFLKIPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNR FT THQYSEKGKWTTNTETGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFE FT NSCLETMEVVQQTRVDKLTQGRQTYDWTLNRNQPAATALANTIEVFRSNDLTANESGRL FT IDFLKDVMESMNKEEIEITTHFQRKRRVRDNMTKKMITQRTIGKKKQRLNKRGYLIRAL FT TLNTMTKDAERGKLKRRAIATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAK FT LANVVRKMMTNSQDTEISFTITGDNTKWNENQNPRMFLAMITYITRNQPEWFRNILSMA FT PIMFSNKMARLGKGYMFESKRMKIRTQIPAEMLASIDLKYFNESTRKKIEKIRPLLMDG FT TASLSPGMMMGMFNMLSTVLGVSILNLGQKKYTKTTYWWDGLQSSDDFALIVNAPNHEG FT IQAGVDRFYRTCKLVGINMSKKKSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSGV FT NESADMSIGVTVIKNNMINNDLGPATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFEL FT KKLWDQTQSKVGLLVSDGGPNLYNIRNLHIPEVCLKWELMDDDYRGRLCNPLNPFVSHK FT EIDSVNNAVVLPAHGPAKSMEYDAVATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCN FT LFEKFFPSSSYRRPVGISSMVEAMVSRARIDARVDFESGRIKKEEFSEIMKICSTIEEL FT RRQK" FT gene 107..379 FT /gene="PB1-F2" FT misc_feature 107..379 FT /gene="PB1-F2" FT /note="nonfunctional PB1-F2 protein due to mutation" XX SQ Sequence 2316 BP; 826 A; 441 C; 520 G; 529 T; 0 other; caaaccattt gaatggatgt caatccgact ctacttttcc taaaaattcc agcacaaaat 60 gccataagca ccacattccc ttatactgga gatcctccat acagccatgg aacaggaaca 120 ggatacacca tggacacagt aaacagaaca caccaatact cagaaaaggg gaagtggaca 180 accaacacag agactggtgc accccagctc aacccgattg acggaccact acctgaagat 240 aatgaaccaa gtgggtatgc acaaacagac tgtgttctag aggctatggc tttccttgaa 300 gaatcccatc caggaatatt tgaaaattca tgccttgaaa caatggaagt tgttcaacaa 360 acaagggtag ataaactgac tcaaggtcgc cagacttatg attggacatt aaacagaaat 420 caaccggcag caactgcatt ggccaacacc atagaagttt tcagatcgaa tgacctaaca 480 gctaacgagt caggaaggct aatagatttc ttaaaggatg tgatggaatc aatgaacaaa 540 gaggaaatag agataacaac ccactttcaa agaaaaagga gagtaagaga caacatgacc 600 aagaagatga tcacgcaaag aacaataggg aagaaaaaac agagactgaa taagagaggc 660 tatctaataa gagcactgac attaaatacg atgaccaaag atgcagagag aggcaagtta 720 aaaagaaggg ctatcgcaac acctgggatg cagattagag gtttcgtata ctttgttgaa 780 actttagcta ggagcatttg cgaaaagctt gaacagtctg ggctcccagt agggggcaat 840 gaaaagaagg ccaaattggc aaatgttgtg agaaagatga tgactaattc acaagacaca 900 gagatttctt tcacaatcac tggggacaac actaaatgga atgagaatca aaatcctcga 960 atgttcctgg cgatgattac atatatcacc agaaatcaac ccgagtggtt tagaaacatc 1020 ctgagcatgg cacccataat gttctcaaat aaaatggcaa gactagggaa agggtacatg 1080 ttcgagagta aaagaatgaa gattcgaaca caaataccag cagaaatgct agcaagcatt 1140 gatctaaagt atttcaatga atcaacaagg aagaaaattg agaagataag gcctctttta 1200 atggatggca cagcatcact gagtcctggg atgatgatgg gcatgttcaa catgctaagt 1260 actgtcttgg gagtctcgat actgaatctt ggacaaaaga aatacaccaa gacgacatac 1320 tggtgggatg ggctccaatc atccgacgat tttgctctca tagtgaatgc accaaaccat 1380 gaaggaatac aagcaggagt ggacagattc tacaggacct gcaaattagt gggaatcaac 1440 atgagcaaaa agaagtccta tataaataag acagggacat ttgaattcac aagctttttt 1500 tatcgctatg gatttgtggc taattttagc atggagctac ccagctttgg agtgtctgga 1560 gtaaacgaat cagctgacat gagtattgga gtaacagtga taaagaacaa catgataaac 1620 aatgaccttg gacctgcaac ggctcagatg gctcttcaat tgttcatcaa agactacaga 1680 tacacatata ggtgtcatag gggagacaca caaattcaga cgagaagatc atttgagttg 1740 aagaagctat gggatcaaac ccaatcaaag gtagggctat tagtatcaga tggaggacca 1800 aacttataca acatacggaa tcttcacatt cctgaagtct gcttaaaatg ggagctaatg 1860 gatgatgatt atcggggaag actttgtaat cccctgaatc cctttgtgag tcataaggag 1920 attgattctg taaacaatgc tgtggtactg ccagcccatg gcccagccaa aagcatggaa 1980 tatgatgccg tcgctactac acattcctgg attcccaaga ggaatcgttc tattctcaac 2040 acaagccaaa ggggaattct tgaggatgaa cagatgtacc agaagtgttg caatttattc 2100 gagaaatttt tccctagcag ttcatatagg agaccggttg gaatttctag catggtggag 2160 gccatggtgt ctagggcccg gattgatgcc agagtcgact ttgagtctgg acggattaag 2220 aaagaagagt tctctgagat catgaagatc tgttccacca ttgaagaact cagacggcaa 2280 aaataatgaa tttaacttgt ccttcatgaa aaaatg 2316 // ID MT167128; SV 1; linear; viral cRNA; STD; VRL; 2208 BP. XX AC MT167128; XX PR Project:PRJNA37813; XX DT 17-MAR-2020 (Rel. 144, Created) DT 17-MAR-2020 (Rel. 144, Last updated, Version 1) XX DE Influenza A virus (A/Arkansas/33/2019(H1N1)) segment 3 polymerase PA (PA) DE and PA-X protein (PA-X) genes, complete cds. XX KW . XX OS Influenza A virus OC Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Insthoviricetes; OC Articulavirales; Orthomyxoviridae; Alphainfluenzavirus. XX RN [1] RP 1-2208 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT "Influenza Sequencing Activity group"; RL Unpublished. XX RN [2] RP 1-2208 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT ; RL Submitted (09-MAR-2020) to the INSDC. RL WHO Collaborating Center for Surveillance, Epidemiology and Control of RL Influenza, Influenza Division, Centers for Disease Control and Prevention, RL 1600 Clifton Road, N.E., Atlanta, GA 30333, USA XX DR MD5; 63a78f78a115274872d87d0fdb48ecdd. XX CC ##FluData-START## CC EPI_ISOLATE_ID :: EPI_ISL_409175 CC NAME :: A/Arkansas/33/2019 CC TYPE :: H1N1 CC Segment_name :: PA CC HOST_AGE :: 51 CC HOST_GENDER :: M CC PASSAGE :: Original CC LOCATION :: United States / Arkansas CC COLLECT_DATE :: 31-Dec-2019 CC Lineage :: A(H1N1)pdm09 CC RESIST_TO_OSELTAMIVIR :: Sensitive CC RESIST_TO_ZANAMVIR :: Sensitive CC SPECIMEN_ID :: 1933800000-114 ORIGINAL CC SENDER_LAB :: Arkansas Department of Health CC SEQLAB_SAMPLE_ID :: 3026054560 CC EPI_SEQUENCE_ID :: EPI1684250 CC ##FluData-END## XX FH Key Location/Qualifiers FH FT source 1..2208 FT /organism="Influenza A virus" FT /segment="3" FT /host="Homo sapiens" FT /strain="A/Arkansas/33/2019" FT /serotype="H1N1" FT /mol_type="viral cRNA" FT /country="USA:Arkansas" FT /collection_date="31-Dec-2019" FT /db_xref="taxon:11320" FT gene 13..2163 FT /gene="PA" FT CDS 13..2163 FT /codon_start=1 FT /gene="PA" FT /product="polymerase PA" FT /protein_id="QIJ23592.1" FT /translation="MEDFVRQCFNPMIVELAEKAMKEYGEDPKIETNKFAAICTHLEVC FT FMYSDFHFIDERGESIIVESGDPNALLKHRFEIIEGRDRIMAWTVVNSICNTTGIEKPK FT FLPDLYDYKENRFIEIGVTRREVHIYYLEKANKIKSEKTHIHIFSFTGEEMATKADYTL FT DEESRARIKTRLFTIRQEMASRSLWDSFRQSERGEETIEEKFEITGTMRRLADQSLPPN FT FSSLENFRAYVDGFEPNGCIEGKLSQMSKEVNAKIEPFLRTTPRPLRLPDGPLCHQRSK FT FLLMDALKLSIEDPSHEGEGIPLYDAIKCMKTFFGWKEPKIVKPHEKGVNPNYLMAWKQ FT VLAELQDIENEEKIPRTKNMKKTSQLKWALGENMAPEKVDFDDCKDVGDLKQYDSDEPE FT PRSLASWVQNEFNKACELTDSSWIELDEIGEDVAPIEHIASMRRNYFTAEVSHCRATEY FT IMKGVYINTALLNASCAAMDDFQLIPMISKCRTKEGRRKTNLYGFIIKGRSHLRNDTDV FT VNFVSMEFSLTDPRLEPHKWEKYCVLEIGDMLLRTAIGQVSRPMFLYVRTNGTSKIKMK FT WGMEMRRCLLQSLQQIESMIEAESSVKEKDMTKEFFENKLETWPIGESPRGVEEGSIGK FT VCRTLLAKSVFNSLYASPQLEGFSAESRKLLLIVQALRDNLEPGTFDLGGLYEAIEECL FT INDPWVLLNASWFNSFLTHALK" FT gene 13..712 FT /gene="PA-X" FT CDS join(13..582,584..712) FT /codon_start=1 FT /ribosomal_slippage FT /gene="PA-X" FT /product="PA-X protein" FT /protein_id="QIJ23593.1" FT /translation="MEDFVRQCFNPMIVELAEKAMKEYGEDPKIETNKFAAICTHLEVC FT FMYSDFHFIDERGESIIVESGDPNALLKHRFEIIEGRDRIMAWTVVNSICNTTGIEKPK FT FLPDLYDYKENRFIEIGVTRREVHIYYLEKANKIKSEKTHIHIFSFTGEEMATKADYTL FT DEESRARIKTRLFTIRQEMASRSLWDSFVSPKEAKKQLKKSLKLQELCAGLPTKVSHQT FT SPALKTSEPM" XX SQ Sequence 2208 BP; 743 A; 415 C; 516 G; 534 T; 0 other; tactgatcca aaatggaaga ctttgtgcga caatgcttca atccaatgat cgtcgagctt 60 gcggaaaagg caatgaaaga atatggggaa gaccccaaaa ttgaaactaa taagtttgct 120 gcaatttgca cacatttgga agtttgtttc atgtattcgg atttccattt cattgatgaa 180 cggggtgaat caataattgt agaatctggt gacccaaatg cactattgaa gcaccgattt 240 gagataattg aaggaagaga ccgaatcatg gcttggacag tggtgaacag tatatgtaac 300 acaacaggga tagagaagcc taaatttctt cctgatttgt atgattacaa agagaaccgg 360 ttcattgaaa ttggagtaac acggagagaa gttcacatat attacctaga gaaagccaac 420 aaaataaaat ctgagaagac acacattcac atcttttcat tcactggaga ggagatggcc 480 accaaagcgg actacactct tgacgaagaa agcagagcaa gaatcaaaac taggcttttc 540 actataagac aagaaatggc cagtaggagt ctatgggatt cctttcgtca gtccgaaaga 600 ggcgaagaaa caattgaaga aaagtttgaa attacaggaa ctatgcgcag gcttgccgac 660 caaagtctcc caccaaactt ctccagcctt gaaaacttca gagcctatgt agatggattc 720 gagccgaacg gctgcattga gggtaagctt tcccaaatgt caaaagaagt gaacgccaaa 780 attgaaccat tcttgaggac gacaccacgc cctctcagat tacctgatgg acctctttgc 840 catcagcggt caaagttcct gctgatggat gctctgaaat taagcattga agacccgagt 900 cacgaggggg aaggaatacc actatatgat gcaatcaaat gcatgaagac attctttggc 960 tggaaagagc ctaaaatagt caaaccacat gagaaaggcg taaatcccaa ttacctcatg 1020 gcttggaagc aggtgctagc agagctacag gatattgaaa atgaagagaa aatcccaagg 1080 acaaagaaca tgaagaaaac aagccaattg aagtgggcac tcggtgaaaa tatggcacct 1140 gaaaaagtgg actttgatga ctgtaaagat gttggagacc ttaaacagta tgacagtgat 1200 gagccagagc ccagatctct agcaagctgg gtccaaaatg aattcaataa ggcatgtgaa 1260 ttgactgatt caagctggat agaacttgat gaaataggag aagatgttgc cccaattgaa 1320 catatagcaa gcatgaggag gaactatttt acagcagaag tgtctcactg cagggctact 1380 gaatacataa tgaagggagt gtacataaat acggccttgc ttaatgcatc ctgtgcagcc 1440 atggatgact ttcagctgat tccaatgata agcaaatgta ggaccaaaga aggaagacgg 1500 aaaacaaacc tttatgggtt cattataaaa ggaaggtctc atttgagaaa tgatactgat 1560 gtggtgaact ttgtaagtat ggagttctca ctcactgatc caagactgga accacacaaa 1620 tgggaaaaat actgtgttct tgaaatagga gacatgctat tgaggactgc gataggtcaa 1680 gtgtcgaggc ccatgttcct atatgtgaga accaatggaa cctccaagat caagatgaaa 1740 tggggcatgg aaatgaggcg ctgccttctt caatctcttc aacagattga gagcatgatt 1800 gaagccgagt cttctgtcaa agagaaagac atgaccaagg aattctttga aaacaaattg 1860 gaaacatggc caatcggaga atcacccagg ggagtggagg aaggctctat tggaaaagtg 1920 tgcagaacct tactggcaaa atctgtgttc aacagtctat atgcttctcc acaacttgag 1980 gggttttcgg ctgaatcaag aaaattgctt ctcattgttc aggcacttag ggacaacctg 2040 gaacctggaa cctttgatct tggggggcta tatgaagcaa tcgaggagtg cttgattaat 2100 gatccctggg ttttgcttaa tgcatcttgg ttcaactcct tcctcacaca tgcactgaag 2160 tagttgtggc aatgctacta tttgctatcc atattgtcca aaaaagta 2208 // ID MT167129; SV 1; linear; viral cRNA; STD; VRL; 1752 BP. XX AC MT167129; XX PR Project:PRJNA37813; XX DT 17-MAR-2020 (Rel. 144, Created) DT 17-MAR-2020 (Rel. 144, Last updated, Version 1) XX DE Influenza A virus (A/Arkansas/33/2019(H1N1)) segment 4 hemagglutinin (HA) DE gene, complete cds. XX KW . XX OS Influenza A virus OC Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Insthoviricetes; OC Articulavirales; Orthomyxoviridae; Alphainfluenzavirus. XX RN [1] RP 1-1752 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT "Influenza Sequencing Activity group"; RL Unpublished. XX RN [2] RP 1-1752 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT ; RL Submitted (09-MAR-2020) to the INSDC. RL WHO Collaborating Center for Surveillance, Epidemiology and Control of RL Influenza, Influenza Division, Centers for Disease Control and Prevention, RL 1600 Clifton Road, N.E., Atlanta, GA 30333, USA XX DR MD5; 6ac8a4d600cc03e20ecd235deffdba55. XX CC ##FluData-START## CC EPI_ISOLATE_ID :: EPI_ISL_409175 CC NAME :: A/Arkansas/33/2019 CC TYPE :: H1N1 CC Segment_name :: HA CC HOST_AGE :: 51 CC HOST_GENDER :: M CC PASSAGE :: Original CC LOCATION :: United States / Arkansas CC COLLECT_DATE :: 31-Dec-2019 CC Lineage :: A(H1N1)pdm09 CC RESIST_TO_OSELTAMIVIR :: Sensitive CC RESIST_TO_ZANAMVIR :: Sensitive CC SPECIMEN_ID :: 1933800000-114 ORIGINAL CC SENDER_LAB :: Arkansas Department of Health CC SEQLAB_SAMPLE_ID :: 3026054560 CC EPI_SEQUENCE_ID :: EPI1684253 CC ##FluData-END## XX FH Key Location/Qualifiers FH FT source 1..1752 FT /organism="Influenza A virus" FT /segment="4" FT /host="Homo sapiens" FT /strain="A/Arkansas/33/2019" FT /serotype="H1N1" FT /mol_type="viral cRNA" FT /country="USA:Arkansas" FT /collection_date="31-Dec-2019" FT /db_xref="taxon:11320" FT gene 21..1721 FT /gene="HA" FT CDS 21..1721 FT /codon_start=1 FT /gene="HA" FT /product="hemagglutinin" FT /function="receptor binding and fusion protein" FT /protein_id="QIJ23594.1" FT /translation="MKAILVVLLYTFTTANADTLCIGYHANNSTDTVDTVLEKNVTVTH FT SVNLLEDKHNGKLCKLRGVAPLHLGKCNIAGWILGNPECESLSTARSWSYIVETSNSDN FT GTCYPGDFINYEELREQLSSVSSFERFEIFPKTSSWPNHDSDKGVTAACPHAGAKSFYK FT NLIWLVKKGNSYPKLNQTYINDKGKEVLVLWGIHHPPTIAAQESLYQNADAYVFVGTSR FT YSKKFKPEIATRPKVRDQEGRMNYYWTLVEPGDKITFEATGNLVVPRYAFTMERDAGSG FT IIISDTPVHDCNTTCQTPEGAINTSLPFQNVHPITIGKCPKYVKSTKLRLATGLRNVPS FT IQSRGLFGAIAGFIEGGWTGMVDGWYGYHHQNEQGSGYAADLKSTQNAIDKITNKVNSV FT IEKMNTQFTAVGKEFNHLEKRIENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSN FT VKNLYEKVRNQLKNNAKEIGNGCFEFYHKCDNTCMESVKNGTYDYPKYSEEAKLNREKI FT DGVKLESTRIYQILAIYSTVASSLVLVVSLGAISFWMCSNGSLQCRICI" FT sig_peptide 21..71 FT /gene="HA" FT mat_peptide 72..1052 FT /gene="HA" FT /product="HA1" FT mat_peptide 1053..1718 FT /gene="HA" FT /product="HA2" XX SQ Sequence 1752 BP; 629 A; 327 C; 385 G; 411 T; 0 other; ggaaaacaaa agcaacaaaa atgaaggcaa tactagtagt tctgctgtat acatttacaa 60 ccgcaaatgc agacacatta tgtataggtt atcatgcgaa caattcaaca gacactgtag 120 acacagtact agaaaagaat gtaacagtaa cacactctgt caatcttctg gaagacaagc 180 ataacggaaa actatgcaaa ctaagagggg tagccccatt gcatttgggt aaatgtaaca 240 ttgctggctg gatcctggga aatccagagt gtgaatcact ctccacagca aggtcatggt 300 cctacattgt ggaaacatct aattcagaca atggaacgtg ttacccagga gatttcatca 360 attatgagga gctaagagag caattgagct cagtgtcatc atttgaaagg tttgaaatat 420 tccccaagac aagttcatgg cctaatcatg actcggacaa aggtgtaacg gcagcatgtc 480 ctcacgctgg agcaaaaagc ttctacaaaa acttgatatg gctggttaaa aaaggaaatt 540 catacccaaa gctcaaccaa acctacatta atgataaagg gaaagaagtc ctcgtgctgt 600 ggggcattca ccatccacct actattgctg cccaagaaag tctctatcag aatgcagatg 660 catatgtttt tgtgggaaca tcaagataca gcaagaagtt caagccggaa atagcaacaa 720 gacccaaagt gagggatcaa gaagggagaa tgaactatta ctggacacta gtagaaccgg 780 gagacaaaat aacattcgaa gcaactggaa atctagtggt accgagatat gcattcacaa 840 tggaaagaga tgctggatct ggtattatca tttcagatac accagtccac gattgcaata 900 caacttgtca gacacccgag ggtgctataa acaccagcct cccatttcag aatgtacatc 960 cgattacaat tgggaaatgt ccaaagtatg taaaaagcac aaaattgaga ctggccacag 1020 gattgaggaa tgtcccgtct attcaatcta gaggcctatt cggggccatt gctggcttca 1080 ttgaaggggg gtggacaggg atggtagatg gatggtacgg ttatcaccat caaaatgagc 1140 aggggtcagg atatgcagcc gatctgaaga gcacacaaaa tgccattgat aagattacta 1200 acaaagtaaa ttctgttatt gaaaagatga atacacagtt cacagcagtg ggtaaagagt 1260 tcaaccacct tgaaaaaaga atagagaatc taaataaaaa agttgatgat ggtttcctgg 1320 acatttggac ttacaatgcc gaactgttgg ttctactgga aaacgaaaga actttggact 1380 atcacgattc aaatgtgaag aacttgtatg aaaaagtaag aaaccagtta aaaaacaatg 1440 ccaaggaaat tggaaacggc tgctttgaat tttaccacaa atgcgacaac acatgcatgg 1500 aaagtgtcaa gaatgggact tatgactacc caaaatactc agaggaagca aaattaaaca 1560 gagaaaaaat agatggagta aagctggaat caacaaggat ctaccagatt ttggcgatct 1620 attcaactgt tgccagttca ttggtactgg tagtctccct gggggcaatc agcttctgga 1680 tgtgctctaa tgggtctcta cagtgtagaa tatgtattta acattaggat ttcagaatca 1740 tgagaaaaac ac 1752 // ID MT167130; SV 1; linear; viral cRNA; STD; VRL; 1540 BP. XX AC MT167130; XX PR Project:PRJNA37813; XX DT 17-MAR-2020 (Rel. 144, Created) DT 17-MAR-2020 (Rel. 144, Last updated, Version 1) XX DE Influenza A virus (A/Arkansas/33/2019(H1N1)) segment 5 nucleocapsid protein DE (NP) gene, complete cds. XX KW . XX OS Influenza A virus OC Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Insthoviricetes; OC Articulavirales; Orthomyxoviridae; Alphainfluenzavirus. XX RN [1] RP 1-1540 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT "Influenza Sequencing Activity group"; RL Unpublished. XX RN [2] RP 1-1540 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT ; RL Submitted (09-MAR-2020) to the INSDC. RL WHO Collaborating Center for Surveillance, Epidemiology and Control of RL Influenza, Influenza Division, Centers for Disease Control and Prevention, RL 1600 Clifton Road, N.E., Atlanta, GA 30333, USA XX DR MD5; 581f141539b07f8ca1be20214d329b00. XX CC ##FluData-START## CC EPI_ISOLATE_ID :: EPI_ISL_409175 CC NAME :: A/Arkansas/33/2019 CC TYPE :: H1N1 CC Segment_name :: NP CC HOST_AGE :: 51 CC HOST_GENDER :: M CC PASSAGE :: Original CC LOCATION :: United States / Arkansas CC COLLECT_DATE :: 31-Dec-2019 CC Lineage :: A(H1N1)pdm09 CC RESIST_TO_OSELTAMIVIR :: Sensitive CC RESIST_TO_ZANAMVIR :: Sensitive CC SPECIMEN_ID :: 1933800000-114 ORIGINAL CC SENDER_LAB :: Arkansas Department of Health CC SEQLAB_SAMPLE_ID :: 3026054560 CC EPI_SEQUENCE_ID :: EPI1684247 CC ##FluData-END## XX FH Key Location/Qualifiers FH FT source 1..1540 FT /organism="Influenza A virus" FT /segment="5" FT /host="Homo sapiens" FT /strain="A/Arkansas/33/2019" FT /serotype="H1N1" FT /mol_type="viral cRNA" FT /country="USA:Arkansas" FT /collection_date="31-Dec-2019" FT /db_xref="taxon:11320" FT gene 34..1530 FT /gene="NP" FT CDS 34..1530 FT /codon_start=1 FT /gene="NP" FT /product="nucleocapsid protein" FT /protein_id="QIJ23595.1" FT /translation="MASQGTKRSYEQMETGGERQDTTEIRASVGRMIGGIGRFYIQMCT FT ELKLSDYDGRLIQNSITIERMVLSSFDERRNKYLEEHPSAGKDPKKTGGPIYRRIDGKW FT TRELILYDKEEIRRVWRQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRM FT CSLMQGSTLPRRSGAAGAAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTRVAYERM FT CNILKGKFQTAAQRAMMDQVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVY FT GLAVASGHDFEREGYSLVGIDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFED FT LRVSSFIRGKKVIPRGKLSTRGVQIASNENVETMDSNTLELRSRYWAIRTRSGGNTNQQ FT KASAGQISVQPTFSVQRNLPFERATIMAAFSGNNEGRTSDMRTEIIRMMESAKPEDLSF FT QGRGVFELSDEKATNPIVPSFDMSNEGSYFFGDNAEEYDN" XX SQ Sequence 1540 BP; 530 A; 296 C; 388 G; 326 T; 0 other; gtagataatc actcaatgag tgacatcgaa gccatggcgt ctcaaggcac caaacgatca 60 tatgaacaaa tggagactgg tggggagcgc caggatacca cagaaatcag agcatctgtt 120 ggaagaatga ttggtggaat cgggagattc tacatccaaa tgtgcactga actaaaactc 180 agtgattatg atggacgact aatccagaac agcataacaa tagagaggat ggtgctttct 240 tcttttgatg agagaagaaa taaataccta gaagagcatc caagtgctgg gaaggaccct 300 aagaaaacag gaggacccat ctatagaaga atagacggaa aatggacaag agaactcatc 360 ctttatgaca aagaagaaat aagaagagtt tggcgccaag caaacaatgg cgaagatgca 420 acagcaggtc ttactcatat catgatttgg cattccaatc tgaatgatgc cacatatcag 480 aggacaagag cacttgttcg cactggaatg gatcccagaa tgtgctctct aatgcaaggt 540 tcaacacttc ccagaaggtc tggtgccgca ggtgctgcag taaaaggagt tggaacaata 600 gctatggagt taatcagaat gataaaacgt ggaatcaatg accgaaattt ctggaggggt 660 gaaaatggaa gaaggacaag agttgcttat gaaagaatgt gcaatatcct caaaggaaaa 720 tttcaaacag ctgcccagag ggcaatgatg gatcaagtaa gagaaagtcg aaacccagga 780 aacgctgaga ttgaagacct cattttcctg gcacggtcag cactcattct gagaggatca 840 gttgcacata aatcctgcct gcctgcttgt gtgtatgggc ttgcagtagc aagtggccat 900 gactttgaaa gggaagggta ctcactggtc gggatagacc cattcaaatt actccaaaac 960 agtcaagtgg tcagcctgat gagaccaaat gaaaatccag ctcacaagag tcaattggta 1020 tggatggcat gccactctgc tgcatttgaa gatttaagag tatcaagttt cataagagga 1080 aagaaagtga tcccaagagg aaagctttcc acaagagggg ttcagattgc ttcaaatgag 1140 aatgtggaaa ccatggactc caataccctg gaactaagaa gcagatactg ggccataaga 1200 accagaagtg gaggaaatac caatcaacag aaggcatctg caggccagat cagtgtgcag 1260 cctacattct cagtgcagcg aaatctccct tttgaaagag caaccattat ggcagcattc 1320 agcgggaaca atgaaggacg gacatccgac atgcgaacag aaattataag aatgatggaa 1380 agtgcaaagc cagaggattt gtccttccag gggcggggag tcttcgagct ctcggacgaa 1440 aaggcaacga acccgatcgt accttccttt gacatgagta atgaagggtc ttatttcttc 1500 ggagacaatg cagaggagta tgacaattga agaaaaatac 1540 // ID MT167131; SV 1; linear; viral cRNA; STD; VRL; 1433 BP. XX AC MT167131; XX PR Project:PRJNA37813; XX DT 17-MAR-2020 (Rel. 144, Created) DT 17-MAR-2020 (Rel. 144, Last updated, Version 1) XX DE Influenza A virus (A/Arkansas/33/2019(H1N1)) segment 6 neuraminidase (NA) DE gene, complete cds. XX KW . XX OS Influenza A virus OC Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Insthoviricetes; OC Articulavirales; Orthomyxoviridae; Alphainfluenzavirus. XX RN [1] RP 1-1433 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT "Influenza Sequencing Activity group"; RL Unpublished. XX RN [2] RP 1-1433 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT ; RL Submitted (09-MAR-2020) to the INSDC. RL WHO Collaborating Center for Surveillance, Epidemiology and Control of RL Influenza, Influenza Division, Centers for Disease Control and Prevention, RL 1600 Clifton Road, N.E., Atlanta, GA 30333, USA XX DR MD5; 3e6b0484f5b86172a2d4f5d7484c38ce. XX CC ##FluData-START## CC EPI_ISOLATE_ID :: EPI_ISL_409175 CC NAME :: A/Arkansas/33/2019 CC TYPE :: H1N1 CC Segment_name :: NA CC HOST_AGE :: 51 CC HOST_GENDER :: M CC PASSAGE :: Original CC LOCATION :: United States / Arkansas CC COLLECT_DATE :: 31-Dec-2019 CC Lineage :: A(H1N1)pdm09 CC RESIST_TO_OSELTAMIVIR :: Sensitive CC RESIST_TO_ZANAMVIR :: Sensitive CC SPECIMEN_ID :: 1933800000-114 ORIGINAL CC SENDER_LAB :: Arkansas Department of Health CC SEQLAB_SAMPLE_ID :: 3026054560 CC EPI_SEQUENCE_ID :: EPI1684252 CC ##FluData-END## XX FH Key Location/Qualifiers FH FT source 1..1433 FT /organism="Influenza A virus" FT /segment="6" FT /host="Homo sapiens" FT /strain="A/Arkansas/33/2019" FT /serotype="H1N1" FT /mol_type="viral cRNA" FT /country="USA:Arkansas" FT /collection_date="31-Dec-2019" FT /db_xref="taxon:11320" FT gene 9..1418 FT /gene="NA" FT CDS 9..1418 FT /codon_start=1 FT /gene="NA" FT /product="neuraminidase" FT /protein_id="QIJ23596.1" FT /translation="MNPNQKIITIGSICMTIGMANLILQIGNIISIWVSHSIQTGNQSQ FT IETCNKNVITYENNTWVNQTYVNISNTNSAARQSVASVKLAGNSSLCPVSGWAIYSKDN FT SVRIGSKGDVFVIREPFISCSPLECRTFFLTQGALLNDKHSNGTIKDRSPYRTLMSCPI FT GEVPSPYNSRFESVAWSASACHDGTNWLTIGISGPDSGAVAVLKYNGIITDTIKSWRNN FT ILRTQESECACVNGSCFTIMTDGPSDGQASYKIFRIEKGKIIKSVEMKAPNYHYEECSC FT YPDSSEITCVCRDNWHGSNRPWVSFNQNLEYQMGYICSGVFGDNPRPNDKTGSCGPVSS FT NGANGVKGFSFKYGNGVWIGRTKSISSRKGFEMIWDPNGWTGTDNKFSKKQDIVGINEW FT SGYSGSFVQHPELTGLNCIRPCFWVELIRGRPEENTIWTSGSSISFCGVDSDIVGWSWP FT DGAELPFTIDK" XX SQ Sequence 1433 BP; 465 A; 267 C; 332 G; 369 T; 0 other; agtttaaaat gaatccaaac caaaagataa taaccattgg ctctatctgt atgacaattg 60 gaatggctaa cttaatatta caaattggaa acataatctc aatatgggtt agccactcaa 120 ttcaaaccgg aaaccaaagc cagatcgaaa catgcaataa aaacgtcatt acttatgaaa 180 acaatacttg ggtaaatcag acatatgtta acatcagcaa caccaactct gctgctagac 240 agtcagtggc ttccgtgaaa ttagcgggca attcctctct ctgccctgtc agtggatggg 300 ctatatacag taaagacaac agtgtaagaa tcggttccaa gggggatgtg tttgtcataa 360 gggaaccatt catatcatgc tctcccttgg aatgcagaac cttcttcttg actcaagggg 420 ctttgctaaa tgacaaacat tccaatggaa ccattaaaga cagaagccca tatcgaaccc 480 taatgagctg tcctattggt gaagttccct ctccatacaa ctcaagattt gagtcagtcg 540 cttggtcagc aagtgcttgt catgatggca ccaattggct aacaattgga atttctggcc 600 cagacagtgg ggcagtggct gtgttaaaat acaatggcat aataacagac actatcaaga 660 gttggaggaa caatatattg agaacacaag agtctgaatg tgcatgtgta aatggttctt 720 gctttaccat aatgaccgat ggaccaagtg atggacaggc ctcatacaaa atcttcagaa 780 tagaaaaggg aaagataatc aaatcagtcg aaatgaaagc ccctaattat cactatgagg 840 aatgctcctg ttaccctgat tctagtgaaa tcacatgtgt gtgcagggat aactggcatg 900 gctcgaatcg accgtgggtg tctttcaacc agaatctgga ataccagatg ggatacatat 960 gcagtggggt tttcggagac aacccacgcc ctaatgataa gacaggcagt tgtggtccag 1020 tatcgtctaa tggagcaaat ggggtaaaag gattttcatt caaatacggc aatggtgttt 1080 ggatagggag aactaagagc attagttcaa gaaaaggttt tgagatgatt tgggatccga 1140 atggatggac tgggactgac aataaattct caaaaaagca agatatcgta ggaataaatg 1200 agtggtcagg gtatagcggg agttttgttc agcatccaga actaacaggg ctgaattgta 1260 taagaccttg cttctgggtt gaactaataa gaggacgacc cgaagagaac acaatctgga 1320 ctagtgggag cagcatatcc ttttgtggtg tagacagtga cattgtgggt tggtcttggc 1380 cagacggtgc tgagttgcca tttaccattg acaagtaatt tgttcaaaaa act 1433 // ID MT167132; SV 1; linear; viral cRNA; STD; VRL; 1002 BP. XX AC MT167132; XX PR Project:PRJNA37813; XX DT 17-MAR-2020 (Rel. 144, Created) DT 17-MAR-2020 (Rel. 144, Last updated, Version 1) XX DE Influenza A virus (A/Arkansas/33/2019(H1N1)) segment 7 matrix protein 2 DE (M2) and matrix protein 1 (M1) genes, complete cds. XX KW . XX OS Influenza A virus OC Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Insthoviricetes; OC Articulavirales; Orthomyxoviridae; Alphainfluenzavirus. XX RN [1] RP 1-1002 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT "Influenza Sequencing Activity group"; RL Unpublished. XX RN [2] RP 1-1002 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT ; RL Submitted (09-MAR-2020) to the INSDC. RL WHO Collaborating Center for Surveillance, Epidemiology and Control of RL Influenza, Influenza Division, Centers for Disease Control and Prevention, RL 1600 Clifton Road, N.E., Atlanta, GA 30333, USA XX DR MD5; 2ade77c250de30330b48e4741ebd37a5. XX CC ##FluData-START## CC EPI_ISOLATE_ID :: EPI_ISL_409175 CC NAME :: A/Arkansas/33/2019 CC TYPE :: H1N1 CC Segment_name :: M CC HOST_AGE :: 51 CC HOST_GENDER :: M CC PASSAGE :: Original CC LOCATION :: United States / Arkansas CC COLLECT_DATE :: 31-Dec-2019 CC Lineage :: A(H1N1)pdm09 CC RESIST_TO_OSELTAMIVIR :: Sensitive CC RESIST_TO_ZANAMVIR :: Sensitive CC SPECIMEN_ID :: 1933800000-114 ORIGINAL CC SENDER_LAB :: Arkansas Department of Health CC SEQLAB_SAMPLE_ID :: 3026054560 CC EPI_SEQUENCE_ID :: EPI1684249 CC ##FluData-END## XX FH Key Location/Qualifiers FH FT source 1..1002 FT /organism="Influenza A virus" FT /segment="7" FT /host="Homo sapiens" FT /strain="A/Arkansas/33/2019" FT /serotype="H1N1" FT /mol_type="viral cRNA" FT /country="USA:Arkansas" FT /collection_date="31-Dec-2019" FT /db_xref="taxon:11320" FT gene 14..995 FT /gene="M2" FT CDS join(14..39,728..995) FT /codon_start=1 FT /gene="M2" FT /product="matrix protein 2" FT /protein_id="QIJ23598.1" FT /translation="MSLLTEVETPTRSEWECRCSGSNDPLFIAANIIGILHLILWITDR FT LFFKCIYRRFKYGLKRGPSTEGVPDSMREEYQQEQQSAVDVDDGHFVNIELE" FT gene 14..772 FT /gene="M1" FT CDS 14..772 FT /codon_start=1 FT /gene="M1" FT /product="matrix protein 1" FT /protein_id="QIJ23597.1" FT /translation="MSLLTEVETYVLSIIPSGPLKAEIAQRLESVFAGKNTDLEALMEW FT LKTRPILSPLTKGILGFVFTLTVPSERGLQRRRFIQNALNGNGDPNNMDRAVKLYKKLK FT REITFHGAKEVSLSYSTGALASCMGLIYNRMGTVTTEAAFGLVCATCEQIADSQHRSHR FT QMATTTNPLIRHENRMVLASTTAKAMEQVAGSSEQAAEAMEVANKTRQMVHAMRTIGTH FT PSSSAGLRDDLLENLQAYQKRMGVQMQRFK" XX SQ Sequence 1002 BP; 301 A; 209 C; 251 G; 241 T; 0 other; tagatgttta aagatgagtc ttctaaccga ggtcgaaacg tacgttcttt ctatcatccc 60 gtcaggcccc ctcaaagccg agatcgcaca gagactggaa agtgtctttg caggaaagaa 120 cacagatctt gaggctctca tggaatggct aaagacaaga ccaatcttgt cacctctgac 180 taagggaatt ttaggatttg tgttcacgct caccgtgccc agtgagcgag gactgcagcg 240 tagacgcttt atccaaaatg ccctaaatgg aaatggggac ccgaacaaca tggatagagc 300 agttaaacta tacaagaaac tcaaaagaga aataacgttc catggggcca aggaggtgtc 360 actaagctat tcaactggtg cacttgcaag ttgcatgggc ctcatataca acaggatggg 420 aacagtgacc acagaagctg ctttcggtct agtttgtgcc acttgtgaac agattgctga 480 ttcacagcat cggtctcaca gacaaatggc tactaccaca aatccactaa tcaggcatga 540 aaacagaatg gtgctggcta gcactacggc aaaggctatg gaacaggtgg ctggatcgag 600 tgaacaggca gcggaggcca tggaggttgc taataagact aggcagatgg tacatgcaat 660 gagaactatt ggaactcatc ctagctccag tgctggtcta agagatgacc ttcttgaaaa 720 tttgcaggcc taccagaagc gaatgggagt gcagatgcag cggttcaaat gatcctctct 780 tcattgcagc aaacatcatt gggatcttgc acctgatatt gtggattact gatcgtcttt 840 ttttcaaatg catttatcgt cgctttaaat acggtttgaa aagagggcct tctacggaag 900 gagtgcctga ttccatgagg gaagaatatc aacaggagca gcagagtgct gtggatgttg 960 acgatggtca ttttgtcaac atagagctag agtaaaaaac ta 1002 // ID MT167133; SV 1; linear; viral cRNA; STD; VRL; 865 BP. XX AC MT167133; XX PR Project:PRJNA37813; XX DT 17-MAR-2020 (Rel. 144, Created) DT 17-MAR-2020 (Rel. 144, Last updated, Version 1) XX DE Influenza A virus (A/Arkansas/33/2019(H1N1)) segment 8 nuclear export DE protein (NEP) and nonstructural protein 1 (NS1) genes, complete cds. XX KW . XX OS Influenza A virus OC Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Insthoviricetes; OC Articulavirales; Orthomyxoviridae; Alphainfluenzavirus. XX RN [1] RP 1-865 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT "Influenza Sequencing Activity group"; RL Unpublished. XX RN [2] RP 1-865 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT ; RL Submitted (09-MAR-2020) to the INSDC. RL WHO Collaborating Center for Surveillance, Epidemiology and Control of RL Influenza, Influenza Division, Centers for Disease Control and Prevention, RL 1600 Clifton Road, N.E., Atlanta, GA 30333, USA XX DR MD5; 6f3797a5f5af1fe90d84024c7e9863d5. XX CC ##FluData-START## CC EPI_ISOLATE_ID :: EPI_ISL_409175 CC NAME :: A/Arkansas/33/2019 CC TYPE :: H1N1 CC Segment_name :: NS CC HOST_AGE :: 51 CC HOST_GENDER :: M CC PASSAGE :: Original CC LOCATION :: United States / Arkansas CC COLLECT_DATE :: 31-Dec-2019 CC Lineage :: A(H1N1)pdm09 CC RESIST_TO_OSELTAMIVIR :: Sensitive CC RESIST_TO_ZANAMVIR :: Sensitive CC SPECIMEN_ID :: 1933800000-114 ORIGINAL CC SENDER_LAB :: Arkansas Department of Health CC SEQLAB_SAMPLE_ID :: 3026054560 CC EPI_SEQUENCE_ID :: EPI1684248 CC ##FluData-END## XX FH Key Location/Qualifiers FH FT source 1..865 FT /organism="Influenza A virus" FT /segment="8" FT /host="Homo sapiens" FT /strain="A/Arkansas/33/2019" FT /serotype="H1N1" FT /mol_type="viral cRNA" FT /country="USA:Arkansas" FT /collection_date="31-Dec-2019" FT /db_xref="taxon:11320" FT gene 15..852 FT /gene="NEP" FT /gene_synonym="NS2" FT CDS join(15..44,517..852) FT /codon_start=1 FT /gene="NEP" FT /gene_synonym="NS2" FT /product="nuclear export protein" FT /note="nonstructural protein 2" FT /protein_id="QIJ23600.1" FT /translation="MESNTMSSFQDILMRMSKMQLGSSSEDLSGMVTRFESLKIYRDSL FT GEAVMRMGDLHYLQSRNEKWREQLGQKFEEIRWLIEEIRHRLKATENSFEQITFMQALQ FT LLLEVEQEIRAFSFQLI" FT gene 15..674 FT /gene="NS1" FT CDS 15..674 FT /codon_start=1 FT /gene="NS1" FT /product="nonstructural protein 1" FT /protein_id="QIJ23599.1" FT /translation="MESNTMSSFQVDCFLWHIRKRFADNGLGDAPFLDRLRRDQKSLKG FT RGNTLGLDIKTATLVGKQIVEWILKEESSETLRMAIASVPTSRYISDMTLEEMSRDWFM FT LMPRQKIIGPLCVRLDQAVMDKNIVLEANFSVIFNRLETLVLLRAFTEEGTIVGEISPL FT PSLPGHTYEDVKNAVGVLIGGLEWNGNTVRVSENIQRFAWRSCDENGRPSLPPEQK" XX SQ Sequence 865 BP; 279 A; 165 C; 206 G; 215 T; 0 other; gtgacaaaaa cataatggaa tccaacacca tgtcaagctt tcaggtagac tgttttcttt 60 ggcatattcg caagcgattt gcagacaatg gattgggtga tgccccattc cttgatcggc 120 tacgccgaga tcaaaagtcc ttaaaaggaa gaggcaacac ccttggcctc gacatcaaaa 180 cagccactct tgttgggaaa caaattgtgg aatggatttt gaaagaggaa tccagcgaga 240 cacttagaat ggcaattgca tctgtaccta cttcgcgtta catttctgac atgaccctcg 300 aggaaatgtc acgagactgg ttcatgctta tgcctaggca aaagataata ggccctcttt 360 gcgtgcgatt ggaccaggcg gtcatggata agaacatagt actggaagca aacttcagtg 420 taatcttcaa ccgattagag accttggtac tactaagggc tttcactgag gagggaacaa 480 tagttggaga aatttcacca ttaccttctc ttccaggaca tacttatgag gatgtcaaaa 540 atgcagttgg ggtcctcatc ggaggacttg agtggaatgg taacacggtt cgagtctctg 600 aaaatataca gagattcgct tggagaagct gtgatgagaa tgggagacct tcactacctc 660 cagagcagaa atgagaagtg gcgggaacaa ttgggacaga aatttgagga aataaggtgg 720 ttaattgaag aaatacgaca cagattgaaa gcgacagaga atagtttcga acaaataaca 780 tttatgcaag ccttacaact actgcttgaa gtagagcaag agataagagc tttctcgttt 840 cagcttattt aatgataaaa aacac 865 // ID MT167134; SV 1; linear; viral cRNA; STD; VRL; 2313 BP. XX AC MT167134; XX PR Project:PRJNA37813; XX DT 17-MAR-2020 (Rel. 144, Created) DT 17-MAR-2020 (Rel. 144, Last updated, Version 1) XX DE Influenza A virus (A/Vermont/31/2019(H1N1)) segment 1 polymerase PB2 (PB2) DE gene, complete cds. XX KW . XX OS Influenza A virus OC Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Insthoviricetes; OC Articulavirales; Orthomyxoviridae; Alphainfluenzavirus. XX RN [1] RP 1-2313 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT "Influenza Sequencing Activity group"; RL Unpublished. XX RN [2] RP 1-2313 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT ; RL Submitted (09-MAR-2020) to the INSDC. RL WHO Collaborating Center for Surveillance, Epidemiology and Control of RL Influenza, Influenza Division, Centers for Disease Control and Prevention, RL 1600 Clifton Road, N.E., Atlanta, GA 30333, USA XX DR MD5; 76ab3c513d2a6e218347e070f2335b12. XX CC ##FluData-START## CC EPI_ISOLATE_ID :: EPI_ISL_409567 CC NAME :: A/Vermont/31/2019 CC TYPE :: H1N1 CC Segment_name :: PB2 CC HOST_AGE :: 49 CC HOST_GENDER :: F CC PASSAGE :: Original CC LOCATION :: United States / Vermont CC COLLECT_DATE :: 26-Dec-2019 CC Lineage :: A(H1N1)pdm09 CC RESIST_TO_OSELTAMIVIR :: Sensitive CC RESIST_TO_ZANAMVIR :: Sensitive CC SPECIMEN_ID :: 20-000001-VIR-01 ORIGINAL CC SENDER_LAB :: Vermont Department of Health Laboratory CC SEQLAB_SAMPLE_ID :: 3026054625 CC EPI_SEQUENCE_ID :: EPI1687196 CC ##FluData-END## XX FH Key Location/Qualifiers FH FT source 1..2313 FT /organism="Influenza A virus" FT /segment="1" FT /host="Homo sapiens" FT /strain="A/Vermont/31/2019" FT /serotype="H1N1" FT /mol_type="viral cRNA" FT /country="USA:Vermont" FT /collection_date="26-Dec-2019" FT /db_xref="taxon:11320" FT gene 16..2295 FT /gene="PB2" FT CDS 16..2295 FT /codon_start=1 FT /gene="PB2" FT /product="polymerase PB2" FT /protein_id="QIJ23601.1" FT /translation="MERIKELRDLMSQSRTREILTKTTVDHMAIIKKYTSGRQEKNPAL FT RMKWMMAMKYPITANKRIMDIIPERNEQGQTLWSKINDAGSDRVMVSPLAVTWWNRNGP FT TTSTVHYPKVYKTYFEKVERLKHGTFGPVHFRNQVKIRRRVDTNPGHADLSAKEAQDVI FT MEVVFPNEVGARILTSESQLAITKEKKEELQNCKIAPLMVAYMLERELVRKTRFLPVAG FT GTSSVYIEVLHLTQGTCWEQMYTPGGEVRNDDVDQSLIIAARNIVRRAAVSADPLASLL FT EMCHSTQIGGVKMVDILKQNPTEEQAVDICKAAIGLRISSSFSFGGFTFKRTSGSSVKK FT EEEMLTGNLQTLKLRVHEGYEEFTMVGKRATAILRKATRRLIQLIVSGRDEQSIAEAII FT VAMVFSQEDCMIKAVRGDLNFVNRANQRLNPMHQLLRHFQKDAKVLFQNWGIETIDNVM FT GMIGILPDMTPSTEMSLRGIRVSKMGVDEYSSTERVVVSIDRFLRVRDQRGNVLLSPEE FT VSETQGTEKLTITYSSSMMWEINGPESVLVNTYQWIIRNWEIVKIQWSQDPTMLYNKME FT FEPFQSLVPKATRSRYSGFVRTLFQQMRDVLGTFDTVQIIKLLPFAAAPPEQSRMQFSS FT LTVNVRGSGLRILVRGNSPVFNYNKATKRLTILGKDAGALTEDPDEGTSGVESAVLRGF FT LILGKEDKRYGPALSINELSNLAKGEKANVLIGQGDIVLVMKRKRDSSILTDSQTATKR FT IRMAIN" XX SQ Sequence 2313 BP; 795 A; 434 C; 581 G; 503 T; 0 other; tcaaatatat tcaatatgga gagaataaaa gagctgagag atctaatgtc gcagtcccgc 60 actcgcgaga tactcactaa gaccactgtg gaccatatgg ccatcatcaa aaagtacaca 120 tcgggaaggc aagagaagaa ccccgcgctc agaatgaagt ggatgatggc aatgaaatac 180 ccaattacgg caaacaagag aataatggac ataatcccag agaggaatga acaaggacaa 240 accctctgga gcaaaataaa cgatgctgga tcagaccgag tgatggtatc acctctggca 300 gtaacatggt ggaataggaa tggtccaaca acaagtacag ttcattaccc taaggtatat 360 aaaacttatt tcgaaaaggt cgaaaggttg aaacatggta ccttcggccc tgtccacttc 420 agaaatcaag ttaaaataag gaggagagtt gatacaaacc ctggccatgc agatctcagt 480 gccaaggagg cacaggatgt gattatggaa gttgttttcc caaatgaagt gggggcaaga 540 atactgacat cagagtcaca gctggcaata acaaaagaga aaaaagaaga gctccagaat 600 tgtaaaattg ctcccttgat ggtggcgtac atgctagaaa gagaattggt ccgtaaaaca 660 aggtttctcc cagtagccgg tgggacaagc agtgtttata ttgaggtgtt gcacttgacc 720 caagggacgt gctgggagca gatgtacact ccaggaggag aagtgagaaa tgatgatgtt 780 gaccaaagct tgattatcgc tgctagaaac atagtaagaa gagcagcagt gtcagcagac 840 ccattagcat ctctcttgga aatgtgccac agcacacaga ttggaggtgt gaagatggtg 900 gacatcctta aacagaatcc aactgaggag caagccgtag acatatgcaa ggcggcaata 960 gggttgagga tcagctcatc tttcagtttt ggtgggttca ctttcaaaag gacaagcgga 1020 tcatcagtca agaaagaaga agaaatgcta acgggcaacc tccaaacact gaaattaaga 1080 gtacatgaag ggtatgaaga attcacaatg gttgggaaaa gagcaacagc tattctcaga 1140 aaggcaacca ggagattgat ccaattaata gtaagcggga gagacgagca gtcaatagct 1200 gaagcaataa ttgtggccat ggtattctca caagaggatt gcatgatcaa agcagttagg 1260 ggcgatctga actttgtcaa tagggcaaac cagagactga atcccatgca ccaactcttg 1320 aggcatttcc aaaaagatgc aaaggtgctt ttccagaact ggggaattga aaccatcgac 1380 aatgtgatgg gaatgatcgg aatactgccc gacatgaccc caagcacgga gatgtcactg 1440 agaggaataa gagtcagcaa gatgggagta gatgaatact ccagcacgga gagagtggta 1500 gtgagtattg accgattttt gagggttaga gatcaaagag gaaacgtact attgtctccc 1560 gaagaagtca gtgaaacgca aggaactgag aagttgacaa taacttattc gtcatcaatg 1620 atgtgggaaa tcaacggccc tgagtcagtg ctagtcaaca cttatcaatg gataatcaga 1680 aactgggaaa ttgtgaaaat tcaatggtca caagacccca caatgttata caacaaaatg 1740 gaatttgaac catttcagtc tcttgttcct aaggcaacca gaagccggta cagtggattc 1800 gtaaggacac tgttccagca aatgagggat gtgcttggga catttgacac tgtccaaata 1860 ataaaacttc tcccctttgc tgctgctcca ccagaacaga gcaggatgca attttcttca 1920 ttgactgtga atgtgagagg atcagggtta aggatactgg taagaggcaa ttctccagta 1980 ttcaattaca acaaggcaac caaacgactt acgattcttg gaaaggatgc aggtgcattg 2040 actgaagatc cagatgaagg cacatctggg gtggagtctg ctgtcctgag aggattcctc 2100 attttaggca aagaagacaa gagatatggc ccagcattaa gcatcaatga actgagcaat 2160 cttgcaaaag gagagaaagc taatgtgcta attgggcagg gggacatagt gttggtaatg 2220 aaacgaaaac gggactctag catacttact gacagccaga cagcgaccaa aagaattcga 2280 atggccatca attagtgtcg aattgtttaa aaa 2313 // ID MT167135; SV 1; linear; viral cRNA; STD; VRL; 2196 BP. XX AC MT167135; XX PR Project:PRJNA37813; XX DT 17-MAR-2020 (Rel. 144, Created) DT 17-MAR-2020 (Rel. 144, Last updated, Version 1) XX DE Influenza A virus (A/Vermont/31/2019(H1N1)) segment 3 polymerase PA (PA) DE and PA-X protein (PA-X) genes, complete cds. XX KW . XX OS Influenza A virus OC Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Insthoviricetes; OC Articulavirales; Orthomyxoviridae; Alphainfluenzavirus. XX RN [1] RP 1-2196 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT "Influenza Sequencing Activity group"; RL Unpublished. XX RN [2] RP 1-2196 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT ; RL Submitted (09-MAR-2020) to the INSDC. RL WHO Collaborating Center for Surveillance, Epidemiology and Control of RL Influenza, Influenza Division, Centers for Disease Control and Prevention, RL 1600 Clifton Road, N.E., Atlanta, GA 30333, USA XX DR MD5; 52306082e32f030346e62373a833614e. XX CC ##FluData-START## CC EPI_ISOLATE_ID :: EPI_ISL_409567 CC NAME :: A/Vermont/31/2019 CC TYPE :: H1N1 CC Segment_name :: PA CC HOST_AGE :: 49 CC HOST_GENDER :: F CC PASSAGE :: Original CC LOCATION :: United States / Vermont CC COLLECT_DATE :: 26-Dec-2019 CC Lineage :: A(H1N1)pdm09 CC RESIST_TO_OSELTAMIVIR :: Sensitive CC RESIST_TO_ZANAMVIR :: Sensitive CC SPECIMEN_ID :: 20-000001-VIR-01 ORIGINAL CC SENDER_LAB :: Vermont Department of Health Laboratory CC SEQLAB_SAMPLE_ID :: 3026054625 CC EPI_SEQUENCE_ID :: EPI1687194 CC ##FluData-END## XX FH Key Location/Qualifiers FH FT source 1..2196 FT /organism="Influenza A virus" FT /segment="3" FT /host="Homo sapiens" FT /strain="A/Vermont/31/2019" FT /serotype="H1N1" FT /mol_type="viral cRNA" FT /country="USA:Vermont" FT /collection_date="26-Dec-2019" FT /db_xref="taxon:11320" FT gene 13..2163 FT /gene="PA" FT CDS 13..2163 FT /codon_start=1 FT /gene="PA" FT /product="polymerase PA" FT /protein_id="QIJ23602.1" FT /translation="MEDFVRQCFNPMIVELAEKAMKEYGEDPKIETNKFAAICTHLEVC FT FMYSDFHFIDERGESIILESGDPNALLKHRFEIIEGRDRIMAWTVVNSICNTTGIEKPK FT FLPDLYDYKENRFIEIGVTRREVHIYYLEKANKIKSEKTHIHIFSFTGEEMATKADYTL FT DEESRARIKTRLFTIRQEMASRSLWDSFRQSERGEETIEEKFEITGTMRKLADQSLPPN FT FSCLENFRAYVDGFEPNGCIEGKLSQMSKEVNAKIEPFLRTTPRPLRLPDGPLCHQRSK FT FLLMDALKLSIEDPSHEGEGIPLYDAIKCMKTFFGWKEPKIVKPHEKGVNPNYLMAWKQ FT VLAELQDIENEEKIPRTKNMKKTSQLKWALGENMAPEKVDFDDCKDVGDLKQYDSDEPE FT PRSLASWVQNEFNKACELTDSSWIELDEIGEDVAPIEHIASMRRNYFTAEVSHCRATEY FT IMKGVYINTALLNASCAAMDDFQLIPMISKCRTKEGRRKTNLYGFIVKGRSHLRNDTDV FT VNFVSMEFSLTDPRLEPHKWEKYCVLEIGDMLLRTAIGQVSRPMFLYVRTNGTSKIKMK FT WGMEMRRCLLQSLQQIESMIEAESSVKEKDMTKEFFENKSETWPIGESPRGVEEGSIGK FT VCRTLLAKSVFNSLYASPQLEGFSAESRKLLLIVQALRDNLEPGTFDLGGLYEAIEECL FT INDPWVLLNASWFNSFLTHALK" FT gene 13..712 FT /gene="PA-X" FT CDS join(13..582,584..712) FT /codon_start=1 FT /ribosomal_slippage FT /gene="PA-X" FT /product="PA-X protein" FT /protein_id="QIJ23603.1" FT /translation="MEDFVRQCFNPMIVELAEKAMKEYGEDPKIETNKFAAICTHLEVC FT FMYSDFHFIDERGESIILESGDPNALLKHRFEIIEGRDRIMAWTVVNSICNTTGIEKPK FT FLPDLYDYKENRFIEIGVTRREVHIYYLEKANKIKSEKTHIHIFSFTGEEMATKADYTL FT DEESRARIKTRLFTIRQEMASRSLWDSFVSPKEAKKQLKKSLKLQELCASLPTKVSHQT FT SPALKTSEPM" XX SQ Sequence 2196 BP; 734 A; 422 C; 516 G; 524 T; 0 other; tactgatcca aaatggaaga ctttgtgcga caatgcttca atccaatgat cgtcgagctt 60 gcggaaaagg caatgaaaga atatggggaa gaccccaaaa ttgaaactaa taagtttgct 120 gcaatttgca cacatttgga agtttgtttc atgtattcgg atttccattt cattgatgaa 180 cggggtgaat caataatttt agaatctggt gacccaaatg cactattgaa gcaccgattt 240 gagataattg aaggaagaga ccgaatcatg gcctggacag tggtgaacag tatatgtaac 300 acaacaggga tagagaagcc taaatttctt cctgatttgt atgattacaa agagaaccgg 360 ttcattgaaa ttggagtaac acggagagaa gtccacatat attacctaga gaaagccaac 420 aaaataaaat ctgagaagac acacattcac atcttttcat tcactggaga ggagatggcc 480 accaaagcgg actacaccct tgacgaagaa agcagagcaa gaatcaaaac taggcttttc 540 actataagac aagaaatggc cagtaggagt ctatgggatt cctttcgtca gtccgaaaga 600 ggcgaagaaa caattgaaga aaagtttgaa attacaggaa ctatgcgcaa gcttgccgac 660 caaagtctcc caccaaactt ctcctgcctt gaaaacttca gagcctatgt agatggattc 720 gagccgaacg gctgcattga gggcaagctt tcccaaatgt caaaagaagt gaacgccaaa 780 attgaaccat tcttgaggac gacaccacgc cccctcagat tacctgatgg acctctttgc 840 catcagcggt caaagttcct gctgatggat gctctgaaat taagcattga agacccgagt 900 cacgaggggg aaggaatacc actatatgat gcaatcaaat gcatgaagac attctttggc 960 tggaaagagc ctaaaatagt caaaccacat gagaaaggcg taaatcccaa ttacctcatg 1020 gcttggaagc aggtgctagc agagctacag gacattgaaa atgaagagaa aatcccaagg 1080 acaaagaaca tgaagaaaac aagccaattg aagtgggcac tcggtgaaaa tatggcacct 1140 gaaaaagtgg actttgatga ctgtaaagat gttggagacc ttaaacagta tgacagtgat 1200 gagccagagc ccagatctct agcaagctgg gtccaaaatg aattcaataa ggcatgtgaa 1260 ttgactgatt caagctggat agaacttgat gaaataggag aagatgttgc cccgattgaa 1320 catatagcaa gcatgaggag gaactatttc acagcagaag tgtcccactg cagggctact 1380 gaatacataa tgaagggagt gtacataaat acggccttgc ttaatgcatc ctgtgcagcc 1440 atggatgact ttcagctgat tccaatgata agcaaatgta ggaccaaaga aggaagacgg 1500 aaaacaaacc tgtatgggtt cattgtaaaa ggaaggtctc atttgagaaa tgatactgat 1560 gtagtgaact ttgtaagtat ggagttctca ctcactgatc caagactgga accacacaaa 1620 tgggaaaaat actgtgttct tgaaatagga gacatgctat tgaggactgc gataggtcaa 1680 gtgtcgaggc ccatgttcct atatgtgaga accaatggaa cctccaagat caagatgaaa 1740 tggggcatgg aaatgaggcg ctgccttctt caatctcttc aacaaattga gagcatgatt 1800 gaagccgagt cttctgtcaa agagaaagac atgaccaagg aattctttga gaacaaatcg 1860 gaaacatggc caatcggaga gtcacccagg ggagtggagg aaggctctat tggaaaagtg 1920 tgcagaacct tactggcaaa atctgtgttc aacagtctat atgcttctcc acaacttgag 1980 gggttttcgg ctgaatcaag aaaattgctt ctcattgttc aggcacttag ggacaacctg 2040 gaacctggaa cctttgatct tggggggcta tatgaagcaa tcgaggagtg cttgattaat 2100 gatccctggg ttttgcttaa tgcatcttgg ttcaactcct tcctcacaca tgcactgaag 2160 tagttgtggc aatgctacta tttgctatcc atattg 2196 // ID MT167136; SV 1; linear; viral cRNA; STD; VRL; 1752 BP. XX AC MT167136; XX PR Project:PRJNA37813; XX DT 17-MAR-2020 (Rel. 144, Created) DT 17-MAR-2020 (Rel. 144, Last updated, Version 1) XX DE Influenza A virus (A/Vermont/31/2019(H1N1)) segment 4 hemagglutinin (HA) DE gene, complete cds. XX KW . XX OS Influenza A virus OC Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Insthoviricetes; OC Articulavirales; Orthomyxoviridae; Alphainfluenzavirus. XX RN [1] RP 1-1752 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT "Influenza Sequencing Activity group"; RL Unpublished. XX RN [2] RP 1-1752 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT ; RL Submitted (09-MAR-2020) to the INSDC. RL WHO Collaborating Center for Surveillance, Epidemiology and Control of RL Influenza, Influenza Division, Centers for Disease Control and Prevention, RL 1600 Clifton Road, N.E., Atlanta, GA 30333, USA XX DR MD5; c4d32361558c8f27b9a45a87462e18ff. XX CC ##FluData-START## CC EPI_ISOLATE_ID :: EPI_ISL_409567 CC NAME :: A/Vermont/31/2019 CC TYPE :: H1N1 CC Segment_name :: HA CC HOST_AGE :: 49 CC HOST_GENDER :: F CC PASSAGE :: Original CC LOCATION :: United States / Vermont CC COLLECT_DATE :: 26-Dec-2019 CC Lineage :: A(H1N1)pdm09 CC RESIST_TO_OSELTAMIVIR :: Sensitive CC RESIST_TO_ZANAMVIR :: Sensitive CC SPECIMEN_ID :: 20-000001-VIR-01 ORIGINAL CC SENDER_LAB :: Vermont Department of Health Laboratory CC SEQLAB_SAMPLE_ID :: 3026054625 CC EPI_SEQUENCE_ID :: EPI1687205 CC ##FluData-END## XX FH Key Location/Qualifiers FH FT source 1..1752 FT /organism="Influenza A virus" FT /segment="4" FT /host="Homo sapiens" FT /strain="A/Vermont/31/2019" FT /serotype="H1N1" FT /mol_type="viral cRNA" FT /country="USA:Vermont" FT /collection_date="26-Dec-2019" FT /db_xref="taxon:11320" FT gene 21..1721 FT /gene="HA" FT CDS 21..1721 FT /codon_start=1 FT /gene="HA" FT /product="hemagglutinin" FT /function="receptor binding and fusion protein" FT /protein_id="QIJ23604.1" FT /translation="MKAILVVMLYTFTTANADTLCIGYHANNSTDTVDTVLEKNVTVTH FT SVNLLEDKHNGKLCKLRGVAPLHLGKCNIAGWILGNPECESLSTARSWSYIVETSNSDN FT GTCYPGDFINYEELREQLSSVSSFERFEIFPKTSSWPNHDSDNGVTAACPHAGAKSFYK FT NLIWLVKKGKSYPKINQTYINDKGKEVLVLWGIHHPPTIADQQSLYQNADAYVFVGTSR FT YSKKFKPEIATRPKVRDQEGRMNYYWTLVEPGDKITFEATGNLVAPRYAFTMERDAGSG FT IIISDTPVHDCNTTCQTPEGAINTSLPFQNVHPITIGKCPKYVKSTKLRLATGLRNVPS FT IQSRGLFGAIAGFIEGGWTGMVDGWYGYHHQNEQGSGYAADLKSTQNAIDKITNKVNSV FT IEKMNTQFTAVGKEFNHLEKRIENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSN FT VKNLYEKVRNQLKNNAKEIGNGCFEFYHKCDNTCMESVKNGTYDYPKYSEEAKLNREKI FT DGVKLDSTRIYQILAIYSTVASSLVLVVSLGAISFWMCSNGSLQCRICI" FT sig_peptide 21..71 FT /gene="HA" FT mat_peptide 72..1052 FT /gene="HA" FT /product="HA1" FT mat_peptide 1053..1718 FT /gene="HA" FT /product="HA2" XX SQ Sequence 1752 BP; 628 A; 330 C; 385 G; 409 T; 0 other; ggaaaacaaa agcaacaaaa atgaaggcaa tactagtagt tatgctgtat acatttacaa 60 ccgcaaatgc agacacatta tgtataggtt atcatgcgaa caattcaaca gacactgtgg 120 acacagtact agaaaagaat gtaacagtaa cacactctgt caatcttctg gaagacaagc 180 ataacggaaa actatgcaaa ctaagagggg tagccccatt gcatttgggt aaatgtaaca 240 ttgctggctg gatcctggga aatccagagt gtgaatcact ctccacagca agatcatggt 300 cctacattgt ggaaacatct aattcagaca atggaacgtg ttacccagga gatttcatca 360 attatgagga gctaagagag caattgagct cagtgtcatc atttgaaagg tttgaaatat 420 tccccaagac aagttcatgg cctaatcatg actcggacaa tggtgtaacg gcagcatgtc 480 ctcacgctgg agcaaaaagc ttctacaaaa acttgatatg gctggttaaa aaaggaaaat 540 catacccaaa gatcaaccaa acctacatta atgataaagg gaaagaagtc ctcgtgctgt 600 ggggcattca ccatccacct actattgctg accaacaaag tctctatcag aatgcagatg 660 catatgtttt tgtggggaca tcaagataca gcaagaagtt caagccggaa atagcaacaa 720 gacccaaagt gagggatcaa gaagggagaa tgaactatta ctggacacta gtagaaccgg 780 gagacaaaat aacattcgaa gcaactggta atctagtggc accgagatat gcattcacaa 840 tggaaagaga tgctggatct ggtattatca tttcagatac accagtccac gattgcaata 900 caacttgtca gacacccgag ggtgctataa acaccagcct cccatttcag aatgtacatc 960 cgatcacaat tgggaaatgt ccaaagtatg taaaaagcac aaaattgaga ctggccacag 1020 gattgaggaa tgtcccgtct attcaatcta gaggcctatt cggggccatt gctggcttca 1080 tcgaaggggg gtggacaggg atggtagatg gatggtacgg ttatcaccat caaaatgagc 1140 aggggtcagg atatgcagcc gatctgaaga gcacacaaaa tgccattgat aagattacta 1200 acaaagtaaa ttctgttatt gaaaagatga acacacagtt cacagcagtt ggtaaagagt 1260 tcaaccacct tgaaaaaaga atagagaatc taaataaaaa ggttgatgat ggtttcctgg 1320 acatttggac ttacaatgcc gaactgttgg ttctactgga aaacgaaaga actttggact 1380 atcacgattc aaatgtgaag aacttgtatg aaaaagtaag aaaccagtta aaaaacaatg 1440 ccaaggaaat tggaaacggc tgctttgaat tttaccacaa atgcgacaac acatgcatgg 1500 aaagtgtcaa gaatgggact tatgactacc caaaatactc agaggaagca aaattaaaca 1560 gagaaaaaat agatggagta aagctggact caacaaggat ctaccagatt ttggcgatct 1620 attcaactgt tgccagttca ttggtactgg tagtctccct gggggcaatc agcttctgga 1680 tgtgctctaa tgggtctcta cagtgtagaa tatgtattta acattaggat ttcagaatca 1740 tgagaaaaac ac 1752 // ID MT167137; SV 1; linear; viral cRNA; STD; VRL; 1540 BP. XX AC MT167137; XX PR Project:PRJNA37813; XX DT 17-MAR-2020 (Rel. 144, Created) DT 17-MAR-2020 (Rel. 144, Last updated, Version 1) XX DE Influenza A virus (A/Vermont/31/2019(H1N1)) segment 5 nucleocapsid protein DE (NP) gene, complete cds. XX KW . XX OS Influenza A virus OC Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Insthoviricetes; OC Articulavirales; Orthomyxoviridae; Alphainfluenzavirus. XX RN [1] RP 1-1540 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT "Influenza Sequencing Activity group"; RL Unpublished. XX RN [2] RP 1-1540 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT ; RL Submitted (09-MAR-2020) to the INSDC. RL WHO Collaborating Center for Surveillance, Epidemiology and Control of RL Influenza, Influenza Division, Centers for Disease Control and Prevention, RL 1600 Clifton Road, N.E., Atlanta, GA 30333, USA XX DR MD5; f807b36d6f673b340bc623270807e2c7. XX CC ##FluData-START## CC EPI_ISOLATE_ID :: EPI_ISL_409567 CC NAME :: A/Vermont/31/2019 CC TYPE :: H1N1 CC Segment_name :: NP CC HOST_AGE :: 49 CC HOST_GENDER :: F CC PASSAGE :: Original CC LOCATION :: United States / Vermont CC COLLECT_DATE :: 26-Dec-2019 CC Lineage :: A(H1N1)pdm09 CC RESIST_TO_OSELTAMIVIR :: Sensitive CC RESIST_TO_ZANAMVIR :: Sensitive CC SPECIMEN_ID :: 20-000001-VIR-01 ORIGINAL CC SENDER_LAB :: Vermont Department of Health Laboratory CC SEQLAB_SAMPLE_ID :: 3026054625 CC EPI_SEQUENCE_ID :: EPI1687187 CC ##FluData-END## XX FH Key Location/Qualifiers FH FT source 1..1540 FT /organism="Influenza A virus" FT /segment="5" FT /host="Homo sapiens" FT /strain="A/Vermont/31/2019" FT /serotype="H1N1" FT /mol_type="viral cRNA" FT /country="USA:Vermont" FT /collection_date="26-Dec-2019" FT /db_xref="taxon:11320" FT gene 34..1530 FT /gene="NP" FT CDS 34..1530 FT /codon_start=1 FT /gene="NP" FT /product="nucleocapsid protein" FT /protein_id="QIJ23605.1" FT /translation="MASQGTKRSYEQMETGGERQDTTEIRASVGRMIGGIGRFYIQMCT FT ELKLSDYDGRLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRIDGKW FT TRELILYDKEEIRRVWRQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRM FT CSLMQGSTLPRRSGAAGAAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTRVAYERM FT CNILKGKFQTAAQRAMMDQVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVY FT GLAVASGHDFEREGYSLVGIDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFED FT LRVSSFIRGKKVIPRGKLSTRGVQIASNENVETMDSNTLELRSRYWAIRTRSGGNTNQQ FT KASAGQISVQPTFSVQRNLPFERATIMAAFSGNNEGRTSDMRTEVIRMMESAKPEDLSF FT QGRGVFELSDEKATNPIVPSFDMSNEGSYFFGDNAEEYDN" XX SQ Sequence 1540 BP; 521 A; 298 C; 397 G; 324 T; 0 other; gtagataatc actcaatgag tgacatcgaa gccatggcgt ctcaaggcac caaacgatca 60 tatgaacaaa tggagactgg tggggagcgc caggatacca cagaaatcag agcatctgtt 120 ggaagaatga ttggtggaat cgggagattc tacatccaaa tgtgcactga actaaaactc 180 agtgattatg atggacgact aatccagaac agcataacaa tagagaggat ggtgctttct 240 gcttttgatg agagaagaaa taaataccta gaagagcatc caagtgctgg gaaggaccct 300 aagaaaacag gaggacccat ctatagaaga atagacggaa aatggacaag agaactcatc 360 ctttatgaca aagaagaaat aaggagagtt tggcgccaag caaacaatgg cgaagatgca 420 acagcaggtc ttactcatat catgatttgg cattccaatc tgaatgatgc cacatatcag 480 aggacaagag cacttgttcg cactggaatg gatcccagaa tgtgctctct aatgcaaggt 540 tcaacacttc ccaggaggtc tggtgccgca ggtgctgcag taaaaggagt tggaacaata 600 gctatggagt taatcagaat gataaagcgt ggaatcaatg accgaaattt ctggaggggt 660 gaaaatggac gaaggacaag agttgcttat gaaagaatgt gcaatatcct caaaggaaaa 720 tttcaaacag ctgcccagag ggcaatgatg gatcaagtaa gggaaagtcg aaacccagga 780 aacgctgaga ttgaagacct cattttcctg gcacggtcag cactcattct gagaggatca 840 gttgcacata aatcctgcct gcctgcttgt gtgtatgggc ttgcagtagc aagtggccat 900 gactttgaaa gggaagggta ctcactggtc gggatagacc cattcaaatt actccaaaac 960 agtcaagtgg tcagcctgat gagaccaaat gaaaatccag ctcacaagag tcaattggta 1020 tggatggcat gccactctgc tgcatttgaa gatttaagag tatcaagttt cataagagga 1080 aagaaagtga tcccaagagg aaagctttcc acaagagggg ttcagattgc ttcaaatgag 1140 aatgtggaaa ccatggactc caataccctg gaactaagaa gcagatactg ggccataaga 1200 accaggagtg gaggaaatac caatcaacag aaggcatctg caggccagat cagtgtgcag 1260 cctacattct cagtgcagcg aaatctcccc tttgaaagag caaccattat ggcagcattc 1320 agcgggaaca atgaagggcg gacatccgac atgcgaacag aagttataag aatgatggaa 1380 agtgcaaagc cagaggattt gtccttccag gggcggggag tcttcgagct ctcggacgaa 1440 aaggcaacga acccgatcgt gccttccttt gacatgagta atgaagggtc ttatttcttc 1500 ggagacaatg cagaggagta tgacaattga agaaaaatac 1540 // ID MT167138; SV 1; linear; viral cRNA; STD; VRL; 1433 BP. XX AC MT167138; XX PR Project:PRJNA37813; XX DT 17-MAR-2020 (Rel. 144, Created) DT 17-MAR-2020 (Rel. 144, Last updated, Version 1) XX DE Influenza A virus (A/Vermont/31/2019(H1N1)) segment 6 neuraminidase (NA) DE gene, complete cds. XX KW . XX OS Influenza A virus OC Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Insthoviricetes; OC Articulavirales; Orthomyxoviridae; Alphainfluenzavirus. XX RN [1] RP 1-1433 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT "Influenza Sequencing Activity group"; RL Unpublished. XX RN [2] RP 1-1433 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT ; RL Submitted (09-MAR-2020) to the INSDC. RL WHO Collaborating Center for Surveillance, Epidemiology and Control of RL Influenza, Influenza Division, Centers for Disease Control and Prevention, RL 1600 Clifton Road, N.E., Atlanta, GA 30333, USA XX DR MD5; 66fefb78b0d9a3096c1c105b43ea5021. XX CC ##FluData-START## CC EPI_ISOLATE_ID :: EPI_ISL_409567 CC NAME :: A/Vermont/31/2019 CC TYPE :: H1N1 CC Segment_name :: NA CC HOST_AGE :: 49 CC HOST_GENDER :: F CC PASSAGE :: Original CC LOCATION :: United States / Vermont CC COLLECT_DATE :: 26-Dec-2019 CC Lineage :: A(H1N1)pdm09 CC RESIST_TO_OSELTAMIVIR :: Sensitive CC RESIST_TO_ZANAMVIR :: Sensitive CC SPECIMEN_ID :: 20-000001-VIR-01 ORIGINAL CC SENDER_LAB :: Vermont Department of Health Laboratory CC SEQLAB_SAMPLE_ID :: 3026054625 CC EPI_SEQUENCE_ID :: EPI1687199 CC ##FluData-END## XX FH Key Location/Qualifiers FH FT source 1..1433 FT /organism="Influenza A virus" FT /segment="6" FT /host="Homo sapiens" FT /strain="A/Vermont/31/2019" FT /serotype="H1N1" FT /mol_type="viral cRNA" FT /country="USA:Vermont" FT /collection_date="26-Dec-2019" FT /db_xref="taxon:11320" FT gene 9..1418 FT /gene="NA" FT CDS 9..1418 FT /codon_start=1 FT /gene="NA" FT /product="neuraminidase" FT /protein_id="QIJ23606.1" FT /translation="MNPNQKIITIGSICMTIGTANLILQIGNIISIWVSHSIQIGNQSQ FT IETCNKSVITYENNTWVNQTFVNISNTNSAARQSVASVKLAGNSSLCPVSGWAIYSKDN FT SVRIGSKGDVFVIREPFISCSPLECRTFFLTQGALLNDKHSNGTIKDRSPYRTLMSCPI FT GEVPSPYNSRFESVAWSASACHDGTNWLTIGISGPDSGAVAVLKYNGIITDTIKSWRNK FT ILRTQESECACVNGSCFTIMTDGPSDGQASYKIFRIEKGKIIKSVEMKAPNYHYEECSC FT YPDSSEITCVCRDNWHGSNRPWVSFNQNLEYQMGYICSGVFGDNPRPNDKTGSCGPVSS FT NGANGVKGFSFKYGNGVWIGRTKSISSRKGFEMIWDPNGWTGTDNKFSKKQDIVGINEW FT SGYSGSFVQHPELTGLNCIRPCFWVELIRGRPEENTIWTSGSSISFCGVDSDIVGWSWP FT DGAELPFTIDK" XX SQ Sequence 1433 BP; 465 A; 262 C; 333 G; 373 T; 0 other; agtttaaaat gaatccaaac caaaagataa taaccattgg ttctatctgt atgacaattg 60 gaacggctaa cttaatatta caaattggaa acataatctc aatatgggtt agccactcaa 120 ttcaaattgg aaatcaaagc cagattgaaa catgcaataa aagcgtcatt acttatgaaa 180 acaacacttg ggtaaatcag acatttgtta acatcagcaa caccaactca gctgctagac 240 agtcagtggc ttccgtgaaa ttagcgggca attcctctct ctgccctgtt agtggatggg 300 ctatatacag taaagacaac agtgtaagaa tcggttccaa gggggatgtg tttgtcataa 360 gggaaccatt catatcatgc tctcccttgg aatgcagaac cttcttcttg actcaagggg 420 ctttgctaaa tgacaaacat tccaatggaa ccattaaaga cagaagccca tatcgaaccc 480 taatgagctg tcctattggt gaagttccct ctccatacaa ctcaagattt gagtcagtcg 540 cttggtcagc aagtgcttgt catgatggca ccaattggct aacaattgga atttctggcc 600 cagacagtgg ggcagtggct gtgttaaaat acaatggcat aataacagac actatcaaga 660 gttggaggaa caagatattg agaacacaag agtctgaatg tgcatgtgta aatggttctt 720 gctttaccat aatgaccgat ggaccaagtg atggacaggc ctcatacaaa atcttcagaa 780 tagaaaaggg aaagataatc aaatcagtcg aaatgaaagc ccctaattat cactatgaag 840 aatgctcctg ttaccctgat tctagtgaaa tcacatgtgt gtgcagggat aactggcatg 900 gctcgaatcg accgtgggtg tctttcaacc agaatctgga atatcagatg ggatacatat 960 gcagtggggt tttcggagac aatccacgcc ctaatgataa gacaggcagt tgtggtccag 1020 tatcgtctaa tggagcaaat ggggtaaaag gattttcatt caaatacggc aatggtgttt 1080 ggatagggag aactaagagc attagttcaa gaaaaggttt tgagatgatt tgggatccga 1140 atggatggac tgggactgac aataaattct caaaaaagca agatatcgta ggaataaatg 1200 agtggtcagg gtatagcggg agttttgttc agcatccaga actaacaggg ctgaattgta 1260 taagaccttg cttctgggtt gaactaataa gaggacgacc cgaagagaac acaatctgga 1320 ctagcgggag cagcatatcc ttttgtggtg tagacagtga cattgtgggt tggtcttggc 1380 cagacggtgc tgagttgcca tttaccattg acaagtaatt tgttcaaaaa act 1433 // ID MT167139; SV 1; linear; viral cRNA; STD; VRL; 1002 BP. XX AC MT167139; XX PR Project:PRJNA37813; XX DT 17-MAR-2020 (Rel. 144, Created) DT 17-MAR-2020 (Rel. 144, Last updated, Version 1) XX DE Influenza A virus (A/Vermont/31/2019(H1N1)) segment 7 matrix protein 2 (M2) DE and matrix protein 1 (M1) genes, complete cds. XX KW . XX OS Influenza A virus OC Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Insthoviricetes; OC Articulavirales; Orthomyxoviridae; Alphainfluenzavirus. XX RN [1] RP 1-1002 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT "Influenza Sequencing Activity group"; RL Unpublished. XX RN [2] RP 1-1002 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT ; RL Submitted (09-MAR-2020) to the INSDC. RL WHO Collaborating Center for Surveillance, Epidemiology and Control of RL Influenza, Influenza Division, Centers for Disease Control and Prevention, RL 1600 Clifton Road, N.E., Atlanta, GA 30333, USA XX DR MD5; 44b95a067176ecd4f65a188e278cd863. XX CC ##FluData-START## CC EPI_ISOLATE_ID :: EPI_ISL_409567 CC NAME :: A/Vermont/31/2019 CC TYPE :: H1N1 CC Segment_name :: M CC HOST_AGE :: 49 CC HOST_GENDER :: F CC PASSAGE :: Original CC LOCATION :: United States / Vermont CC COLLECT_DATE :: 26-Dec-2019 CC Lineage :: A(H1N1)pdm09 CC RESIST_TO_OSELTAMIVIR :: Sensitive CC RESIST_TO_ZANAMVIR :: Sensitive CC SPECIMEN_ID :: 20-000001-VIR-01 ORIGINAL CC SENDER_LAB :: Vermont Department of Health Laboratory CC SEQLAB_SAMPLE_ID :: 3026054625 CC EPI_SEQUENCE_ID :: EPI1687192 CC ##FluData-END## XX FH Key Location/Qualifiers FH FT source 1..1002 FT /organism="Influenza A virus" FT /segment="7" FT /host="Homo sapiens" FT /strain="A/Vermont/31/2019" FT /serotype="H1N1" FT /mol_type="viral cRNA" FT /country="USA:Vermont" FT /collection_date="26-Dec-2019" FT /db_xref="taxon:11320" FT gene 14..995 FT /gene="M2" FT CDS join(14..39,728..995) FT /codon_start=1 FT /gene="M2" FT /product="matrix protein 2" FT /protein_id="QIJ23608.1" FT /translation="MSLLTEVETPTRSEWECRCSGSNDPLVIAANIIGILHLILWITDR FT LFFKCIYRRFKYGLKRGPSTEGVPESMREEYQQEQQSAVDVDDGHFVNIELE" FT gene 14..772 FT /gene="M1" FT CDS 14..772 FT /codon_start=1 FT /gene="M1" FT /product="matrix protein 1" FT /protein_id="QIJ23607.1" FT /translation="MSLLTEVETYVLSIIPSGPLKAEIAQRLESVFAGKNTDLEALMEW FT LKTRPILSPLTKGILGFVFTLTVPSERGLQRRRFIQNALNGNGDPNNMDRAVKLYKKLK FT REITFHGAKEVSLSYSTGALASCMGLIYNRMGTVTTEAAFGLVCATCEQIADSQHRSHR FT QMATTTNPLIRHENRMVLASTTAKAMEQVAGSSEQAAEAMEVANKTRQMVHAMRTIGTH FT PSSSAGLRDDLLENLQAYQKRMGVQMQRFK" XX SQ Sequence 1002 BP; 304 A; 209 C; 250 G; 239 T; 0 other; tagatgttta aagatgagtc ttctaaccga ggtcgaaacg tacgttcttt ctatcatccc 60 gtcaggcccc ctcaaagccg agatcgcaca gagactggaa agtgtctttg caggaaagaa 120 cacagatctt gaggctctca tggaatggct aaagacaaga ccaatcttgt cacctctgac 180 taagggaatt ttaggatttg tgttcacgct caccgtgccc agtgagcgag gactgcagcg 240 tagacgcttt atccaaaatg ccctaaatgg aaatggggac ccgaacaaca tggatagagc 300 agttaaacta tacaagaaac tcaaaagaga aataacgttc catggggcca aagaagtgtc 360 actaagctat tcaactggtg cacttgcaag ttgcatgggc ctcatataca acaggatggg 420 aacagtgacc acagaagctg ctttcggtct agtttgtgcc acttgtgaac agattgctga 480 ttcacagcat cggtctcaca gacaaatggc tactaccaca aatccactaa tcaggcatga 540 aaacagaatg gtgctggcta gcactacggc aaaggctatg gaacaggtgg ctggatcgag 600 tgaacaggca gcggaggcca tggaggttgc taataagact aggcagatgg tacatgcaat 660 gagaactatt ggaactcatc ctagctccag tgctggtcta agagatgacc ttcttgaaaa 720 tttacaggcc taccagaagc gaatgggagt gcagatgcag cggttcaaat gatcctctcg 780 tcattgcagc aaacatcatt gggatcttgc acctgatatt gtggattact gatcgtcttt 840 ttttcaaatg catttatcgt cgctttaaat acggtttgaa aagagggcct tctacggaag 900 gagtgcctga gtccatgagg gaagaatatc aacaggagca gcagagtgct gtggatgttg 960 acgatggtca ttttgtcaac atagagctag agtaaaaaac ta 1002 // ID MT167140; SV 1; linear; viral cRNA; STD; VRL; 865 BP. XX AC MT167140; XX PR Project:PRJNA37813; XX DT 17-MAR-2020 (Rel. 144, Created) DT 17-MAR-2020 (Rel. 144, Last updated, Version 1) XX DE Influenza A virus (A/Vermont/31/2019(H1N1)) segment 8 nuclear export DE protein (NEP) and nonstructural protein 1 (NS1) genes, complete cds. XX KW . XX OS Influenza A virus OC Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Insthoviricetes; OC Articulavirales; Orthomyxoviridae; Alphainfluenzavirus. XX RN [1] RP 1-865 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT "Influenza Sequencing Activity group"; RL Unpublished. XX RN [2] RP 1-865 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT ; RL Submitted (09-MAR-2020) to the INSDC. RL WHO Collaborating Center for Surveillance, Epidemiology and Control of RL Influenza, Influenza Division, Centers for Disease Control and Prevention, RL 1600 Clifton Road, N.E., Atlanta, GA 30333, USA XX DR MD5; d56b1640ad7967d13f236462227e2763. XX CC ##FluData-START## CC EPI_ISOLATE_ID :: EPI_ISL_409567 CC NAME :: A/Vermont/31/2019 CC TYPE :: H1N1 CC Segment_name :: NS CC HOST_AGE :: 49 CC HOST_GENDER :: F CC PASSAGE :: Original CC LOCATION :: United States / Vermont CC COLLECT_DATE :: 26-Dec-2019 CC Lineage :: A(H1N1)pdm09 CC RESIST_TO_OSELTAMIVIR :: Sensitive CC RESIST_TO_ZANAMVIR :: Sensitive CC SPECIMEN_ID :: 20-000001-VIR-01 ORIGINAL CC SENDER_LAB :: Vermont Department of Health Laboratory CC SEQLAB_SAMPLE_ID :: 3026054625 CC EPI_SEQUENCE_ID :: EPI1687190 CC ##FluData-END## XX FH Key Location/Qualifiers FH FT source 1..865 FT /organism="Influenza A virus" FT /segment="8" FT /host="Homo sapiens" FT /strain="A/Vermont/31/2019" FT /serotype="H1N1" FT /mol_type="viral cRNA" FT /country="USA:Vermont" FT /collection_date="26-Dec-2019" FT /db_xref="taxon:11320" FT gene 15..852 FT /gene="NEP" FT /gene_synonym="NS2" FT CDS join(15..44,517..852) FT /codon_start=1 FT /gene="NEP" FT /gene_synonym="NS2" FT /product="nuclear export protein" FT /note="nonstructural protein 2" FT /protein_id="QIJ23610.1" FT /translation="MESNTMSSFQDILMRMSKMQLGSSSEDLSGMVTRFESLKIYRDSL FT GEAVMRMGDLHYLQSRNEKWREQLGQKFEEIRWLIEEIRHRLKATENSFEQITFMQALQ FT LLLEVEQEIRAFSFQLI" FT gene 15..674 FT /gene="NS1" FT CDS 15..674 FT /codon_start=1 FT /gene="NS1" FT /product="nonstructural protein 1" FT /protein_id="QIJ23609.1" FT /translation="MESNTMSSFQVDCFLWHIRKRFADNGLGDAPFLDRLRRDQKSLKG FT RGNTLGLDIKTATLVGKQIVEWILKEESSETLRMAIASVPTSRYISDMTLEEMSRDWFM FT LMPRQKIIGPLCVRLDQAVMDKNIVLEANFSVIFNRLETLILLRAFTEEGTIVGEISPL FT PSLPGHTYEDVKNAVGVLIGGLEWNGNTVRVSENIQRFAWRSCDENGRPSLPPEQK" XX SQ Sequence 865 BP; 281 A; 166 C; 204 G; 214 T; 0 other; gtgacaaaaa cataatggaa tccaacacca tgtcaagctt tcaggtagac tgttttcttt 60 ggcatattcg caagcgattt gcagacaatg gattgggtga tgccccattc ctcgatcggc 120 tacgccgaga tcaaaagtcc ttaaaaggaa gaggcaacac ccttggcctc gacatcaaaa 180 cagccactct tgttgggaaa caaattgtgg aatggatttt gaaagaggaa tccagcgaga 240 cacttagaat ggcaattgca tctgtaccta cttcgcgtta catttctgac atgaccctcg 300 aggaaatgtc acgagactgg ttcatgctta tgcctaggca aaagataata ggccctcttt 360 gcgtgcgatt ggaccaggcg gtcatggata agaacatagt actggaagca aacttcagtg 420 taatcttcaa ccgattagag accttgatac tactaagggc tttcactgag gagggaacaa 480 tagttggaga aatttcacca ttaccttctc ttccaggaca tacttatgag gatgtcaaaa 540 atgcagttgg ggtcctcatc ggaggacttg agtggaatgg taacacggtt cgagtctctg 600 aaaatataca gagattcgct tggagaagct gtgatgagaa tgggagacct tcactacctc 660 cagagcagaa atgagaagtg gcgggaacaa ttgggacaga aatttgagga aataagatgg 720 ttaattgaag aaatacgaca cagattgaaa gcgacagaga atagtttcga acaaataaca 780 tttatgcaag ccttacaact actgcttgaa gtagagcaag agataagagc tttctcgttt 840 cagcttattt aatgataaaa aacac 865 // ID MT167141; SV 1; linear; viral cRNA; STD; VRL; 2316 BP. XX AC MT167141; XX PR Project:PRJNA37813; XX DT 17-MAR-2020 (Rel. 144, Created) DT 17-MAR-2020 (Rel. 144, Last updated, Version 1) XX DE Influenza A virus (A/Vermont/26/2019(H1N1)) segment 1 polymerase PB2 (PB2) DE gene, complete cds. XX KW . XX OS Influenza A virus OC Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Insthoviricetes; OC Articulavirales; Orthomyxoviridae; Alphainfluenzavirus. XX RN [1] RP 1-2316 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT "Influenza Sequencing Activity group"; RL Unpublished. XX RN [2] RP 1-2316 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT ; RL Submitted (09-MAR-2020) to the INSDC. RL WHO Collaborating Center for Surveillance, Epidemiology and Control of RL Influenza, Influenza Division, Centers for Disease Control and Prevention, RL 1600 Clifton Road, N.E., Atlanta, GA 30333, USA XX DR MD5; 0264503a3893f8bc73bb15d72f205fde. XX CC ##FluData-START## CC EPI_ISOLATE_ID :: EPI_ISL_409560 CC NAME :: A/Vermont/26/2019 CC TYPE :: H1N1 CC Segment_name :: PB2 CC HOST_AGE :: 71 CC HOST_GENDER :: M CC PASSAGE :: Original CC LOCATION :: United States / Vermont CC COLLECT_DATE :: 13-Nov-2019 CC Lineage :: A(H1N1)pdm09 CC SPECIMEN_ID :: 19-010266-VIR-01 ORIGINAL CC SENDER_LAB :: Vermont Department of Health Laboratory CC SEQLAB_SAMPLE_ID :: 3026054618 CC EPI_SEQUENCE_ID :: EPI1687138 CC ##FluData-END## XX FH Key Location/Qualifiers FH FT source 1..2316 FT /organism="Influenza A virus" FT /segment="1" FT /host="Homo sapiens" FT /strain="A/Vermont/26/2019" FT /serotype="H1N1" FT /mol_type="viral cRNA" FT /country="USA:Vermont" FT /collection_date="13-Nov-2019" FT /db_xref="taxon:11320" FT gene 16..2295 FT /gene="PB2" FT CDS 16..2295 FT /codon_start=1 FT /gene="PB2" FT /product="polymerase PB2" FT /protein_id="QIJ23611.1" FT /translation="MERIKELRDLMSQSRTREILTKTTVDHMAIIKKYTSGRQEKNPAL FT RMKWMMAMKYPITADKRIMDIIPERNEQGQTLWSKINDAGSDRVMVSPLAVTWWNRNGP FT TTSTVHYPKVYKTYFEKVERLKHGTFGPVHFRNQVKIRRRVDTNPGHADLSAKEAQDVI FT MEVVFPNEVGARILTSESQLAITKEKKEELQNCKIAPLMVAYMLERELVRKTRFLPVAG FT GTSSVYIEVLHLTQGTCWEQMYTPGGEVRNDDVDQSLIIAARNIVRRSAVSADPLASLL FT EMCHSTQIGGVKMVDILKQNPTEEQAVDICKAAIGLRISSSFSFGGFTFKRTSGSSVKK FT EEEMLTGNLQTLKLRVHEGYEEFTMVGRRATAILRKATRRLIQLIVSGRDEQSIAEAII FT VAMVFSQEDCMIKAVRGDLNFVNRANQRLNPMHQLLRHFQKDAKVLFQNWGVETIDNVM FT GMIGILPDMTPSTEMSLRGIRVSKMGVDEYSSTERVVVSIDRFLRVRDQRGNVLLSPEE FT VSETQGTEKLTITYSSSMMWEINGPESVLVNTYQWIIRNWEIVKIQWSQDPTMLYNKME FT FEPFQSLVPKATRSRYSGFVRTLFQQMRDVLGTFDTVQIIKLLPFAAAPPEQSRMQFSS FT LTVNVRGSGLRILVRGNSPVFNYNKATKRLTILGKDAGALTEDPDEGTSGVESAVLRGF FT LILGKEDKRYGPALSINELSNLAKGEKANVLIGQGDIVLVMKRKRDSSILTDSQTATKR FT IRMAIN" XX SQ Sequence 2316 BP; 796 A; 432 C; 581 G; 507 T; 0 other; tcaaatatat tcaatatgga gagaataaag gagttgagag atctaatgtc gcagtcccgc 60 actcgcgaga tactcactaa gaccactgtg gaccatatgg ccatcatcaa aaagtacaca 120 tcgggaaggc aagagaagaa ccccgcgctc agaatgaagt ggatgatggc aatgaaatac 180 ccaattacgg cagacaagag aataatggac ataatcccag agaggaatga acaaggacaa 240 accctctgga gcaaaataaa cgatgctgga tcagaccgag tgatggtatc acctctggca 300 gtaacatggt ggaataggaa tggtccaaca acaagtacag ttcattaccc taaggtatat 360 aaaacttatt tcgaaaaggt cgaaaggttg aaacatggta ccttcggccc tgtccacttc 420 agaaatcaag ttaaaataag gaggagagtt gatacaaacc ctggccatgc agatctcagt 480 gccaaggagg cacaggatgt gattatggaa gttgttttcc caaatgaagt gggggcaaga 540 atactgacat cagagtcaca gctggcaata acaaaagaga agaaagaaga gctccagaat 600 tgtaaaattg ctcccttgat ggtggcgtac atgctagaaa gagaattggt ccgtaaaaca 660 aggtttctcc cagtagccgg tgggacaagc agtgtttata ttgaggtgtt gcacttgacc 720 caagggacgt gctgggagca aatgtacact ccaggaggag aagtgagaaa tgatgatgtt 780 gaccaaagct tgattatcgc tgctagaaac atagtaagaa gatcagcagt atcagcagac 840 ccattagcat ctctcttgga aatgtgccac agcacacaga ttggaggtgt gaagatggta 900 gacatcctta aacagaatcc aactgaggag caagccgtag acatatgcaa ggcagcaata 960 gggttgagga tcagctcatc tttcagtttt ggtgggttca ctttcaaaag gacaagcgga 1020 tcatcagtca agaaagaaga agaaatgcta acgggcaacc tccaaacact gaaattaaga 1080 gtacatgaag ggtatgaaga attcacaatg gttgggagaa gagcaacagc tattctcaga 1140 aaggcaacca ggagattgat ccaattaata gtaagcggga gagacgagca gtcaatagct 1200 gaagcaataa ttgtggccat ggtattctca caagaggatt gcatgattaa agcagttagg 1260 ggcgatctga actttgtcaa tagggcaaac cagagactga atcccatgca ccaactcttg 1320 aggcatttcc aaaaagatgc aaaagtgctt ttccagaact ggggagttga aaccatcgac 1380 aatgtgatgg gaatgatcgg aatactgcct gacatgaccc caagcacgga gatgtcactg 1440 agaggaataa gagtcagcaa gatgggagta gatgaatact ccagcacgga gagagtggta 1500 gtgagtattg accgattttt gagggttaga gatcaaagag gaaacgtact attgtctccc 1560 gaagaagtca gtgaaacgca aggaactgag aagttgacaa taacttattc gtcatcaatg 1620 atgtgggaaa tcaacggccc tgagtcagtg ctagtcaaca cttatcaatg gataatcaga 1680 aactgggaaa ttgtgaaaat tcaatggtca caagacccca caatgttata caacaaaatg 1740 gaatttgaac catttcagtc tcttgttcct aaggcaacca gaagccgata cagtggattc 1800 gtaaggacac tgttccagca aatgagggat gtgcttggga catttgacac tgtccaaata 1860 ataaaacttc tcccctttgc tgctgctcca ccagaacaga gcaggatgca attttcttca 1920 ttgactgtga atgtgagagg atcagggtta aggatactgg taagaggcaa ttctccagta 1980 ttcaattaca acaaggcaac caaacgactt acgattcttg gaaaggatgc aggtgcattg 2040 actgaagatc cagatgaagg cacatctggg gtggagtctg ctgtcctgag aggattcctc 2100 attttaggca aagaagacaa gagatatggc ccagcattaa gcatcaatga actgagcaat 2160 cttgcaaaag gagagaaagc taatgtgcta attgggcagg gggacatagt gttggtaatg 2220 aaacgaaaac gggactctag catacttact gacagccaga cagcgaccaa aagaattcgg 2280 atggccatca attagtgtcg aattgtttaa aaacga 2316 // ID MT167142; SV 1; linear; viral cRNA; STD; VRL; 2208 BP. XX AC MT167142; XX PR Project:PRJNA37813; XX DT 17-MAR-2020 (Rel. 144, Created) DT 17-MAR-2020 (Rel. 144, Last updated, Version 1) XX DE Influenza A virus (A/Vermont/26/2019(H1N1)) segment 3 polymerase PA (PA) DE and PA-X protein (PA-X) genes, complete cds. XX KW . XX OS Influenza A virus OC Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Insthoviricetes; OC Articulavirales; Orthomyxoviridae; Alphainfluenzavirus. XX RN [1] RP 1-2208 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT "Influenza Sequencing Activity group"; RL Unpublished. XX RN [2] RP 1-2208 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT ; RL Submitted (09-MAR-2020) to the INSDC. RL WHO Collaborating Center for Surveillance, Epidemiology and Control of RL Influenza, Influenza Division, Centers for Disease Control and Prevention, RL 1600 Clifton Road, N.E., Atlanta, GA 30333, USA XX DR MD5; 7405a25b25d2b7099c3efeaea509e01e. XX CC ##FluData-START## CC EPI_ISOLATE_ID :: EPI_ISL_409560 CC NAME :: A/Vermont/26/2019 CC TYPE :: H1N1 CC Segment_name :: PA CC HOST_AGE :: 71 CC HOST_GENDER :: M CC PASSAGE :: Original CC LOCATION :: United States / Vermont CC COLLECT_DATE :: 13-Nov-2019 CC Lineage :: A(H1N1)pdm09 CC SPECIMEN_ID :: 19-010266-VIR-01 ORIGINAL CC SENDER_LAB :: Vermont Department of Health Laboratory CC SEQLAB_SAMPLE_ID :: 3026054618 CC EPI_SEQUENCE_ID :: EPI1687136 CC ##FluData-END## XX FH Key Location/Qualifiers FH FT source 1..2208 FT /organism="Influenza A virus" FT /segment="3" FT /host="Homo sapiens" FT /strain="A/Vermont/26/2019" FT /serotype="H1N1" FT /mol_type="viral cRNA" FT /country="USA:Vermont" FT /collection_date="13-Nov-2019" FT /db_xref="taxon:11320" FT gene 13..2163 FT /gene="PA" FT CDS 13..2163 FT /codon_start=1 FT /gene="PA" FT /product="polymerase PA" FT /protein_id="QIJ23612.1" FT /translation="MEDFVRQCFNPMIVELAEKAMKEYGEDPKIETNKFAAICTHLEVC FT FMYSDFHFIDERGESIIVESGDPNALLKHRFEIIEGRDRIMAWTVVNSICNTTGIEKPK FT FLPDLYDYKENRFIEIGVTRREVHIYYLEKANKIKSEKTHIHIFSFTGEEMATKADYTL FT DEESRARIKTRLFTIRQEMASRSLWDSFRQSERGEETIEEKFEITGTMRKLADQSLPPN FT FSSLENFRAYVDGFEPNGCIEGKLSQMSKEVNAKIEPFLRTTPRPLRLPDGPLCHQRSK FT FLLMDALKLSIEDPSHEGEGIPLYDAIKCMKTFFGWKEPKIVKPHEKGVNPNYLMAWKQ FT VLAELQDIENEEKIPRTKNMKKTSQLKWALGENMAPEKVDFDDCKDVGDLKQYDSDEPE FT PRSLASWVQNEFNKACELTDSSWIELDEIGEDVAPIEHIASMRRNYFTAEVSHCRATEY FT IMKGVYINTALLNASCAAMDDFQLIPMISKCRTKEGRRKTNLYGFIIKGRSHLRNDTDV FT VNFVSMEFSLTDPRLEPHKWEKYCVLEIGDMLLRTAIGQVSRPMFLYVRTNGTSKIKMK FT WGMEMRRCLLQSLQQIESMIEAESSVKEKDMTKEFFENKSETWPIGESPRGVEEGSIGK FT VCRTLLAKSVFNSLYASPQLEGFSAESRKLLLIVQALRDNLEPGTFDLGGLYEAIEECL FT INDPWVLLNASWFNSFLTHALK" FT gene 13..712 FT /gene="PA-X" FT CDS join(13..582,584..712) FT /codon_start=1 FT /ribosomal_slippage FT /gene="PA-X" FT /product="PA-X protein" FT /protein_id="QIJ23613.1" FT /translation="MEDFVRQCFNPMIVELAEKAMKEYGEDPKIETNKFAAICTHLEVC FT FMYSDFHFIDERGESIIVESGDPNALLKHRFEIIEGRDRIMAWTVVNSICNTTGIEKPK FT FLPDLYDYKENRFIEIGVTRREVHIYYLEKANKIKSEKTHIHIFSFTGEEMATKADYTL FT DEESRARIKTRLFTIRQEMASRSLWDSFVSPKEAKKQLKKSLKLQELCASLPTKVSHQT FT SPALKTSEPM" XX SQ Sequence 2208 BP; 747 A; 422 C; 512 G; 527 T; 0 other; tactgatcca aaatggaaga ctttgtgcga caatgcttca atccaatgat cgtcgagctt 60 gcggaaaagg caatgaaaga atatggggaa gaccccaaaa ttgaaactaa taagtttgct 120 gcaatttgca cacatttgga agtttgtttc atgtattcgg atttccattt cattgatgaa 180 cggggtgaat caataattgt agaatctggt gacccaaatg cactattgaa gcaccgattt 240 gagataattg aaggaagaga ccgaatcatg gcctggacag tggtgaacag tatatgtaac 300 acaacaggga tagagaagcc taaatttctt cctgatttgt atgattacaa agagaaccgg 360 ttcattgaaa ttggagtaac acggagagaa gtccacatat attacctaga gaaagccaac 420 aaaataaaat ctgagaagac acacattcac atcttttcat tcactggaga ggagatggcc 480 accaaagcgg actacaccct tgacgaagaa agcagagcaa gaatcaaaac taggcttttc 540 actataagac aagaaatggc cagtaggagt ctatgggatt cctttcgtca gtccgaaaga 600 ggcgaagaaa caattgaaga aaagtttgaa attacaggaa ctatgcgcaa gcttgccgac 660 caaagtctcc caccaaactt ctccagcctt gaaaacttca gagcctatgt agatggattc 720 gagccgaacg gctgcattga gggcaagctt tcccaaatgt caaaagaagt gaacgccaaa 780 attgaaccat tcttgaggac gacaccacgc cccctcagat tacctgatgg acctctttgc 840 catcagcggt caaagttcct actgatggat gctctgaaat taagcattga agacccgagt 900 cacgaggggg aaggaatacc actatatgat gcaatcaaat gcatgaagac attctttggc 960 tggaaagagc ctaaaatagt caaaccacat gagaaaggcg taaatcccaa ttacctcatg 1020 gcctggaagc aggtgctagc agagctacag gacattgaaa atgaagagaa aatcccaagg 1080 acaaagaaca tgaagaaaac aagccaattg aagtgggcac tcggtgaaaa tatggcacct 1140 gaaaaagtgg actttgatga ctgtaaagat gttggagacc ttaaacagta tgacagtgat 1200 gagccagagc ccagatctct agcaagctgg gtccaaaatg aattcaataa ggcatgtgaa 1260 ttgactgatt caagctggat agaacttgat gaaataggag aagatgttgc cccgattgaa 1320 catatagcaa gcatgaggag gaactatttt acagcagaag tgtcccactg cagggctact 1380 gaatacataa tgaagggagt gtacataaat acggccttgc ttaatgcatc ctgtgcagcc 1440 atggatgact ttcagctgat tccaatgata agcaaatgta ggaccaaaga aggaagacga 1500 aaaacaaatc tgtatgggtt cattattaaa ggaaggtctc atttgagaaa tgatactgat 1560 gtagtgaact ttgtaagtat ggagttctca ctcactgatc caagactgga accacacaaa 1620 tgggaaaaat actgtgttct tgaaatagga gacatgctat tgaggactgc gataggtcaa 1680 gtgtcgagac ctatgttcct atatgtgaga accaatggaa cctccaaaat caagatgaaa 1740 tggggcatgg aaatgaggcg ctgccttctt caatctcttc aacagattga gagcatgatt 1800 gaagccgagt cttctgtcaa agagaaagac atgaccaagg aattctttga aaacaaatcg 1860 gaaacatggc caatcggaga gtcacccagg ggagtggagg aaggctctat tggaaaagtg 1920 tgcagaacct tactggcaaa atctgtgttc aacagtctat atgcttctcc acaacttgag 1980 ggattttcgg ctgaatcaag aaaattgctt ctcattgttc aggcacttag ggacaacctg 2040 gaacctggaa cctttgatct tggggggcta tatgaagcaa tcgaggagtg cttgattaat 2100 gatccctggg ttttgcttaa tgcatcttgg ttcaactcct tcctcacaca tgcactgaag 2160 tagttgtggc aatgctacta tttgctatcc atattgtcca aaaaagta 2208 // ID MT167143; SV 1; linear; viral cRNA; STD; VRL; 1752 BP. XX AC MT167143; XX PR Project:PRJNA37813; XX DT 17-MAR-2020 (Rel. 144, Created) DT 17-MAR-2020 (Rel. 144, Last updated, Version 1) XX DE Influenza A virus (A/Vermont/26/2019(H1N1)) segment 4 hemagglutinin (HA) DE gene, complete cds. XX KW . XX OS Influenza A virus OC Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Insthoviricetes; OC Articulavirales; Orthomyxoviridae; Alphainfluenzavirus. XX RN [1] RP 1-1752 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT "Influenza Sequencing Activity group"; RL Unpublished. XX RN [2] RP 1-1752 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT ; RL Submitted (09-MAR-2020) to the INSDC. RL WHO Collaborating Center for Surveillance, Epidemiology and Control of RL Influenza, Influenza Division, Centers for Disease Control and Prevention, RL 1600 Clifton Road, N.E., Atlanta, GA 30333, USA XX DR MD5; 0c51614638bac597c7643487a829981f. XX CC ##FluData-START## CC EPI_ISOLATE_ID :: EPI_ISL_409560 CC NAME :: A/Vermont/26/2019 CC TYPE :: H1N1 CC Segment_name :: HA CC HOST_AGE :: 71 CC HOST_GENDER :: M CC PASSAGE :: Original CC LOCATION :: United States / Vermont CC COLLECT_DATE :: 13-Nov-2019 CC Lineage :: A(H1N1)pdm09 CC SPECIMEN_ID :: 19-010266-VIR-01 ORIGINAL CC SENDER_LAB :: Vermont Department of Health Laboratory CC SEQLAB_SAMPLE_ID :: 3026054618 CC EPI_SEQUENCE_ID :: EPI1687147 CC ##FluData-END## XX FH Key Location/Qualifiers FH FT source 1..1752 FT /organism="Influenza A virus" FT /segment="4" FT /host="Homo sapiens" FT /strain="A/Vermont/26/2019" FT /serotype="H1N1" FT /mol_type="viral cRNA" FT /country="USA:Vermont" FT /collection_date="13-Nov-2019" FT /db_xref="taxon:11320" FT gene 21..1721 FT /gene="HA" FT CDS 21..1721 FT /codon_start=1 FT /gene="HA" FT /product="hemagglutinin" FT /function="receptor binding and fusion protein" FT /protein_id="QIJ23614.1" FT /translation="MKAILVVLLYTFTTANADTLCIGYHANNSTDTVDTVLEKNVTVTH FT SVNLLEDKHNGKLCKLRGVAPLHLGKCNIAGWILGNPECESLSTARSWSYIVETSNSDN FT GTCYPGDFINYEELREQLSSVSSFERFEIFPKTSSWPNHDSDKGVTAACPHAGAKSFYK FT NLIWLVKKGNSYPKLNQTYINDKGKEVLVLWGIHHPPTIADQQSLYQNADAYVFVGTSR FT YSKKFKPEIATRPKVRDQEGRMNYYWTLVEPGDKITFEATGNLVVPRYAFTMERDAGSG FT IIISDTPVHDCNTTCQTPEGAINTSLPFQNVHPITIGKCPKYVKSTKLRLATGLRNVPS FT IQSRGLFGAIAGFIEGGWTGMVDGWYGYHHQNEQGSGYAADLKSTQNAIDKITNKVNSV FT IEKMNTQFTAVGKEFNHLEKRIENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSN FT VKNLYEKVRNQLKNNAKEIGNGCFEFYHKCDNTCMESVKNGTYDYPKYSEEAKLNREKI FT DGVKLESTRIYQILAIYSTAASSLVLVVSLGAISFWMCSNGSLQCRICI" FT sig_peptide 21..71 FT /gene="HA" FT mat_peptide 72..1052 FT /gene="HA" FT /product="HA1" FT mat_peptide 1053..1718 FT /gene="HA" FT /product="HA2" XX SQ Sequence 1752 BP; 630 A; 330 C; 384 G; 408 T; 0 other; ggaaaacaaa agcaacaaaa atgaaggcaa tactagtagt tctgctgtat acatttacaa 60 ccgcaaatgc agacacatta tgtataggtt atcatgcgaa caattcaaca gacactgtag 120 acacagtact agaaaagaat gtaacagtaa cacactctgt caatcttctg gaagacaagc 180 ataatggaaa actatgcaaa ctaagagggg tagccccatt gcatttgggt aaatgtaaca 240 ttgctggctg gatcctggga aatccagagt gtgaatcact ctccacagca agatcatggt 300 cctacattgt ggaaacatct aattcagaca atggaacgtg ttacccagga gatttcatca 360 attatgagga gctaagagag caattgagct cagtgtcatc atttgaaagg tttgaaatat 420 tccccaagac aagttcatgg cctaatcatg actcggacaa aggtgtaacg gcagcatgtc 480 ctcacgctgg agcaaaaagc ttctacaaaa acttgatatg gctggttaaa aaaggaaatt 540 catacccaaa gctcaaccaa acctacatta atgataaagg gaaagaagtc ctcgtgctgt 600 ggggcattca ccatccacct actattgctg accaacaaag cctctatcag aatgcagatg 660 catatgtttt tgtggggaca tcaagataca gcaagaagtt caagccggaa atagcaacaa 720 gacccaaagt gagggatcaa gaagggagaa tgaactatta ctggacacta gtagaaccgg 780 gagacaaaat aacattcgaa gcaactggaa atctagtggt accgagatat gcattcacaa 840 tggaaagaga tgctggatct ggtattatca tttcagatac accagtccac gattgcaata 900 caacttgtca gacacccgag ggtgctataa acaccagcct cccatttcag aatgtacatc 960 cgatcacaat tgggaaatgt ccaaagtacg taaaaagcac aaaattgaga ctggccacag 1020 gattgaggaa tgtcccgtct attcaatcta gaggcctatt cggggccatt gctggcttca 1080 ttgaaggggg gtggacaggg atggtagatg gatggtacgg ttatcaccat caaaatgagc 1140 aggggtcagg atatgcagcc gatctgaaga gcacacaaaa tgccattgat aagattacta 1200 acaaagtaaa ttctgttatt gaaaagatga atacacagtt cacagcagtg ggtaaagagt 1260 tcaaccacct tgaaaaaaga atagagaatc taaataaaaa agttgatgat ggtttcctgg 1320 acatttggac ttacaatgcc gaactgttgg ttctactgga aaacgaaaga actttggact 1380 atcacgattc aaatgtgaag aacttgtatg aaaaagtaag aaaccagtta aaaaacaatg 1440 ccaaggaaat tggaaacggc tgctttgaat tttaccacaa atgcgacaac acatgcatgg 1500 aaagtgtcaa gaatgggact tatgactacc caaaatactc agaggaagca aaattaaaca 1560 gagaaaaaat agatggagta aagctggaat caacaaggat ctaccagatt ttggcgatct 1620 attcaactgc tgccagttca ttggtactgg tagtctccct gggggcaatc agcttctgga 1680 tgtgctctaa tgggtctcta cagtgtagaa tatgtattta acattaggat ttcagaatca 1740 tgagaaaaac ac 1752 // ID MT167144; SV 1; linear; viral cRNA; STD; VRL; 1540 BP. XX AC MT167144; XX PR Project:PRJNA37813; XX DT 17-MAR-2020 (Rel. 144, Created) DT 17-MAR-2020 (Rel. 144, Last updated, Version 1) XX DE Influenza A virus (A/Vermont/26/2019(H1N1)) segment 5 nucleocapsid protein DE (NP) gene, complete cds. XX KW . XX OS Influenza A virus OC Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Insthoviricetes; OC Articulavirales; Orthomyxoviridae; Alphainfluenzavirus. XX RN [1] RP 1-1540 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT "Influenza Sequencing Activity group"; RL Unpublished. XX RN [2] RP 1-1540 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT ; RL Submitted (09-MAR-2020) to the INSDC. RL WHO Collaborating Center for Surveillance, Epidemiology and Control of RL Influenza, Influenza Division, Centers for Disease Control and Prevention, RL 1600 Clifton Road, N.E., Atlanta, GA 30333, USA XX DR MD5; 54fc390d8684a8e843afa236271be10a. XX CC ##FluData-START## CC EPI_ISOLATE_ID :: EPI_ISL_409560 CC NAME :: A/Vermont/26/2019 CC TYPE :: H1N1 CC Segment_name :: NP CC HOST_AGE :: 71 CC HOST_GENDER :: M CC PASSAGE :: Original CC LOCATION :: United States / Vermont CC COLLECT_DATE :: 13-Nov-2019 CC Lineage :: A(H1N1)pdm09 CC SPECIMEN_ID :: 19-010266-VIR-01 ORIGINAL CC SENDER_LAB :: Vermont Department of Health Laboratory CC SEQLAB_SAMPLE_ID :: 3026054618 CC EPI_SEQUENCE_ID :: EPI1687130 CC ##FluData-END## XX FH Key Location/Qualifiers FH FT source 1..1540 FT /organism="Influenza A virus" FT /segment="5" FT /host="Homo sapiens" FT /strain="A/Vermont/26/2019" FT /serotype="H1N1" FT /mol_type="viral cRNA" FT /country="USA:Vermont" FT /collection_date="13-Nov-2019" FT /db_xref="taxon:11320" FT gene 34..1530 FT /gene="NP" FT CDS 34..1530 FT /codon_start=1 FT /gene="NP" FT /product="nucleocapsid protein" FT /protein_id="QIJ23615.1" FT /translation="MASQGTKRSYEQMDTGGERQDTTEIRASVGRMIGGIGRFYIQMCT FT ELKLSDYDGRLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRIDGKW FT TRELILYDKEEIRRVWRQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRM FT CSLMQGSTLPRRSGAAGAAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTRVAYERM FT CNILKGKFQTAAQRAMMDQVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVY FT GLAVASGHDFEREGYSLVGIDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFED FT LRVSSFIRGKKVIPRGKLSTRGVQIASNENVETMDSNTLELRSRYWAIRTRSGGNTNQQ FT KASAGQISVQPTFSVQRNLPFERATIMAAFSGNNEGRTSDMRTEVIRMMESAKPEDLSF FT QGRGVFELSDEKATNPIVPSFDMSNEGSYFFGDNAEEYDN" XX SQ Sequence 1540 BP; 525 A; 298 C; 392 G; 325 T; 0 other; gtagataatc actcaatgag tgacatcgaa gccatggcgt ctcaaggcac caaacgatca 60 tatgaacaaa tggataccgg tggggagcgc caggatacca cagaaatcag agcatctgtt 120 ggaagaatga ttggtggaat cgggagattc tacatccaaa tgtgcactga actaaaactc 180 agtgattatg atggacgact aatccagaac agcataacaa tagagaggat ggtgctttct 240 gcttttgatg agagaagaaa taaataccta gaagagcatc caagtgctgg gaaggaccct 300 aagaaaacag gaggacccat ctatagaaga atagacggaa aatggacaag agaactcatc 360 ctttatgaca aagaagaaat aaggagagtt tggcgccaag caaacaatgg cgaagatgca 420 acagcaggtc ttactcatat catgatttgg cattccaatc tgaatgatgc cacatatcag 480 aggacaagag cacttgttcg cactggaatg gatcccagaa tgtgctctct aatgcaaggt 540 tcaacacttc ccaggaggtc tggtgccgca ggtgctgcag taaaaggagt tggaacaata 600 gctatggagt taatcagaat gataaaacgt ggaatcaatg accgaaattt ctggaggggt 660 gaaaatggac gaaggacaag agttgcttat gaaagaatgt gcaatatcct caaaggaaaa 720 tttcaaacag ctgcccagag ggcaatgatg gatcaagtaa gagaaagtcg aaacccagga 780 aacgctgaga ttgaagacct cattttcctg gcacggtcag cactcattct gagaggatca 840 gttgcacata aatcctgcct gcctgcttgt gtgtatgggc ttgcagtagc aagtggccat 900 gactttgaaa gggaagggta ctcactggtc ggaatagacc cattcaaatt actccaaaac 960 agtcaagtgg tcagcctgat gagaccaaat gaaaatccag ctcacaagag tcaattggta 1020 tggatggcat gccactctgc tgcatttgaa gatttaagag tatcaagttt cataagagga 1080 aagaaagtga tcccaagagg aaagctttcc acaagagggg ttcagattgc ttcaaatgag 1140 aatgtggaaa ccatggactc caataccctg gaactaagaa gcagatactg ggccataaga 1200 accaggagtg gaggaaatac caatcaacag aaggcatctg caggccagat cagtgtgcag 1260 cctacattct cagtgcagcg aaatctccct tttgaaagag caaccattat ggcagcattc 1320 agcgggaaca atgaaggacg gacatccgac atgcgaacag aagttataag aatgatggaa 1380 agtgcaaagc cagaggattt gtccttccag gggcggggag tcttcgagct ctcggacgaa 1440 aaggcaacga acccgatcgt gccttccttt gacatgagta atgaagggtc ttatttcttc 1500 ggagacaatg cagaggagta tgacaattga agaaaaatac 1540 // ID MT167145; SV 1; linear; viral cRNA; STD; VRL; 1433 BP. XX AC MT167145; XX PR Project:PRJNA37813; XX DT 17-MAR-2020 (Rel. 144, Created) DT 17-MAR-2020 (Rel. 144, Last updated, Version 1) XX DE Influenza A virus (A/Vermont/26/2019(H1N1)) segment 6 neuraminidase (NA) DE gene, complete cds. XX KW . XX OS Influenza A virus OC Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Insthoviricetes; OC Articulavirales; Orthomyxoviridae; Alphainfluenzavirus. XX RN [1] RP 1-1433 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT "Influenza Sequencing Activity group"; RL Unpublished. XX RN [2] RP 1-1433 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT ; RL Submitted (09-MAR-2020) to the INSDC. RL WHO Collaborating Center for Surveillance, Epidemiology and Control of RL Influenza, Influenza Division, Centers for Disease Control and Prevention, RL 1600 Clifton Road, N.E., Atlanta, GA 30333, USA XX DR MD5; b04bdb06dbf32b8dab480fe5f5bf2012. XX CC ##FluData-START## CC EPI_ISOLATE_ID :: EPI_ISL_409560 CC NAME :: A/Vermont/26/2019 CC TYPE :: H1N1 CC Segment_name :: NA CC HOST_AGE :: 71 CC HOST_GENDER :: M CC PASSAGE :: Original CC LOCATION :: United States / Vermont CC COLLECT_DATE :: 13-Nov-2019 CC Lineage :: A(H1N1)pdm09 CC SPECIMEN_ID :: 19-010266-VIR-01 ORIGINAL CC SENDER_LAB :: Vermont Department of Health Laboratory CC SEQLAB_SAMPLE_ID :: 3026054618 CC EPI_SEQUENCE_ID :: EPI1687140 CC ##FluData-END## XX FH Key Location/Qualifiers FH FT source 1..1433 FT /organism="Influenza A virus" FT /segment="6" FT /host="Homo sapiens" FT /strain="A/Vermont/26/2019" FT /serotype="H1N1" FT /mol_type="viral cRNA" FT /country="USA:Vermont" FT /collection_date="13-Nov-2019" FT /db_xref="taxon:11320" FT gene 9..1418 FT /gene="NA" FT CDS 9..1418 FT /codon_start=1 FT /gene="NA" FT /product="neuraminidase" FT /protein_id="QIJ23616.1" FT /translation="MNPNQKIITIGSICMTIGMANLILQIGNIISIWVSHSIQIENQSQ FT IETCNKSVITYENNTWVNQTYVNISNTNSAARQSVASVKLAGNSSLCPVSGWAIYSKDN FT SVRIGSKGDVFVIREPFISCSPLECRTFFLTQGALLNDKHSNGTIKDRSPYRTLMSCPI FT GEVPSPYNSRFESVAWSASACHDGTNWLTIGISGPDSGAVAVLKYNGIITDTIKSWRNN FT ILRTQESECACVNGSCFTIMTDGPSDGQASYKIFRIEKGKIIKSVEMKAPNYHYEECSC FT YPDSSEITCVCRDNWHGSNRPWVSFNQNLEYQMGYICSGVFGDNPRPNDKTGSCGPVSS FT NGANGVKGFSFKYGNGVWIGRTKSISSRKGFEMIWDPNGWTGTDNKFSKKQDIVGINEW FT SGYSGSFVQHPELTGLNCIRPCFWVELIRGRPEENTIWTSGSSISFCGVDSDIVGWSWP FT DGAELPFTIDK" XX SQ Sequence 1433 BP; 464 A; 262 C; 333 G; 374 T; 0 other; agtttaaaat gaatccaaac caaaagataa taaccattgg ttctatctgt atgacaattg 60 gaatggctaa cttaatatta cagattggaa acataatctc aatatgggtt agccactcaa 120 ttcaaattga aaatcaaagc cagattgaaa catgcaataa aagcgtcatt acttatgaaa 180 acaacacttg ggtaaatcag acatatgtta acatcagcaa caccaactct gctgctagac 240 agtcagtggc ttccgtgaaa ttagcgggca attcctctct ctgccctgtt agtggatggg 300 ctatatacag taaagacaac agtgtaagaa tcggttccaa gggggatgtg tttgtcataa 360 gggaaccatt catatcatgc tctcccttgg aatgcagaac cttcttcttg actcaagggg 420 ctttgctaaa tgacaaacat tccaatggaa ccattaaaga cagaagccca tatcgaaccc 480 taatgagctg tcctattggt gaagttccct ctccatacaa ctcaagattt gagtcagtcg 540 cttggtcagc aagtgcttgt catgatggca ccaattggct aacaattgga atttctggcc 600 cagacagtgg ggcagtggct gtgttaaaat acaatggcat aataacagac actatcaaga 660 gttggaggaa caatatattg agaacacaag agtctgaatg tgcatgtgta aatggttctt 720 gctttaccat aatgaccgat ggaccaagtg atggacaggc ctcatacaaa atcttcagaa 780 tagaaaaggg aaagataatc aaatcagtcg aaatgaaagc ccctaattat cactatgagg 840 aatgctcctg ttaccctgat tctagtgaaa tcacatgtgt gtgcagggat aactggcatg 900 gctcgaatcg accgtgggtg tctttcaacc agaatctgga atatcagatg ggatacatat 960 gcagtggggt tttcggagac aatccacgcc ctaatgataa gacaggcagt tgtggtccag 1020 tatcgtctaa tggagcaaat ggggtaaaag gattttcatt caaatacggc aatggtgttt 1080 ggatagggag aactaagagc attagttcaa gaaaaggttt tgagatgatt tgggatccga 1140 atggatggac tgggactgac aacaaattct caaaaaagca agatatcgta ggaataaatg 1200 agtggtcagg gtatagcggg agttttgttc agcatccaga actaacaggg ctgaattgta 1260 taagaccttg cttctgggtt gaactaataa gaggacgacc cgaagagaac acaatctgga 1320 ctagcgggag cagcatatcc ttttgtggtg tagacagtga cattgtgggt tggtcttggc 1380 cagacggtgc tgagttgcca tttaccattg acaagtaatt tgttcaaaaa act 1433 // ID MT167146; SV 1; linear; viral cRNA; STD; VRL; 1002 BP. XX AC MT167146; XX PR Project:PRJNA37813; XX DT 17-MAR-2020 (Rel. 144, Created) DT 17-MAR-2020 (Rel. 144, Last updated, Version 1) XX DE Influenza A virus (A/Vermont/26/2019(H1N1)) segment 7 matrix protein 2 (M2) DE and matrix protein 1 (M1) genes, complete cds. XX KW . XX OS Influenza A virus OC Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Insthoviricetes; OC Articulavirales; Orthomyxoviridae; Alphainfluenzavirus. XX RN [1] RP 1-1002 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT "Influenza Sequencing Activity group"; RL Unpublished. XX RN [2] RP 1-1002 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT ; RL Submitted (09-MAR-2020) to the INSDC. RL WHO Collaborating Center for Surveillance, Epidemiology and Control of RL Influenza, Influenza Division, Centers for Disease Control and Prevention, RL 1600 Clifton Road, N.E., Atlanta, GA 30333, USA XX DR MD5; 76cdbbeb9d90ed0696c8ccab940c58ff. XX CC ##FluData-START## CC EPI_ISOLATE_ID :: EPI_ISL_409560 CC NAME :: A/Vermont/26/2019 CC TYPE :: H1N1 CC Segment_name :: M CC HOST_AGE :: 71 CC HOST_GENDER :: M CC PASSAGE :: Original CC LOCATION :: United States / Vermont CC COLLECT_DATE :: 13-Nov-2019 CC Lineage :: A(H1N1)pdm09 CC SPECIMEN_ID :: 19-010266-VIR-01 ORIGINAL CC SENDER_LAB :: Vermont Department of Health Laboratory CC SEQLAB_SAMPLE_ID :: 3026054618 CC EPI_SEQUENCE_ID :: EPI1687134 CC ##FluData-END## XX FH Key Location/Qualifiers FH FT source 1..1002 FT /organism="Influenza A virus" FT /segment="7" FT /host="Homo sapiens" FT /strain="A/Vermont/26/2019" FT /serotype="H1N1" FT /mol_type="viral cRNA" FT /country="USA:Vermont" FT /collection_date="13-Nov-2019" FT /db_xref="taxon:11320" FT gene 14..995 FT /gene="M2" FT CDS join(14..39,728..995) FT /codon_start=1 FT /gene="M2" FT /product="matrix protein 2" FT /protein_id="QIJ23618.1" FT /translation="MSLLTEVETPTRSEWECRCSGSNDPLVIAANIIGILHLILWITDR FT LFFKCIYRRFKYGLKRGPSTEGVPESMREEYQQEQQSAVDVDDGHFVNIELE" FT gene 14..772 FT /gene="M1" FT CDS 14..772 FT /codon_start=1 FT /gene="M1" FT /product="matrix protein 1" FT /protein_id="QIJ23617.1" FT /translation="MSLLTEVETYVLSIIPSGPLKAEIAQRLESVFAGKNTDLEALMEW FT LKTRPILSPLTKGILGFVFTLTVPSERGLQRRRFIQNALNGNGDPNNMDRAVKLYKKLK FT REITFHGAKEVSLSYSTGALASCMGLIYNRMGTVTTEAAFGLVCATCEQIADSQHRSHR FT QMATTTNPLIRHENRMVLASTTAKAMEQVAGSSEQAAEAMEVANKTRQMVHAMRTIGTH FT PSSSAGLRDDLLENLQAYQKRMGVQMQRFK" XX SQ Sequence 1002 BP; 302 A; 211 C; 252 G; 237 T; 0 other; tagatgttta aagatgagtc ttctaaccga ggtcgaaacg tacgttcttt ccattatccc 60 gtcaggcccc ctcaaagccg agatcgcaca gagactggaa agtgtctttg caggaaagaa 120 cacagatctt gaggctctca tggaatggct aaagacaaga ccaatcctgt cacctctgac 180 taagggaatt ctaggatttg tgttcacgct caccgtgccc agtgagcgag gactgcagcg 240 tagacgcttt atccaaaatg ccctaaatgg aaatggggac ccgaacaaca tggatagagc 300 agttaaacta tacaagaaac tcaaaagaga aataacgttc catggggcca aagaggtgtc 360 actaagctat tcaactggtg cacttgcaag ttgcatgggc ctcatataca acaggatggg 420 aacagtgacc acagaagctg ctttcggtct agtttgtgcc acttgtgaac agattgctga 480 ttcacagcat cggtctcaca gacaaatggc tactaccaca aatccactaa tcaggcatga 540 aaacagaatg gtgctggcta gcactacggc aaaggctatg gaacaggtgg ctggatcgag 600 tgaacaggca gcggaggcca tggaggttgc taataagact aggcagatgg tacatgcaat 660 gagaaccatt ggaactcatc ctagctccag tgctggtcta agagatgacc ttcttgaaaa 720 tttgcaggcc taccagaagc gaatgggagt gcagatgcag cggttcaaat gatcctctcg 780 ttattgcagc aaacatcatt gggatcttgc acctgatatt gtggattact gatcgtcttt 840 ttttcaaatg catttatcgt cgctttaaat acggtttgaa aagagggcct tctacggaag 900 gagtgcctga gtccatgagg gaagaatatc aacaggagca gcagagtgct gtggatgttg 960 acgatggtca ttttgtcaac atagagctag agtaaaaaac ta 1002 // ID MT167147; SV 1; linear; viral cRNA; STD; VRL; 865 BP. XX AC MT167147; XX PR Project:PRJNA37813; XX DT 17-MAR-2020 (Rel. 144, Created) DT 17-MAR-2020 (Rel. 144, Last updated, Version 1) XX DE Influenza A virus (A/Vermont/26/2019(H1N1)) segment 8 nuclear export DE protein (NEP) and nonstructural protein 1 (NS1) genes, complete cds. XX KW . XX OS Influenza A virus OC Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Insthoviricetes; OC Articulavirales; Orthomyxoviridae; Alphainfluenzavirus. XX RN [1] RP 1-865 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT "Influenza Sequencing Activity group"; RL Unpublished. XX RN [2] RP 1-865 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT ; RL Submitted (09-MAR-2020) to the INSDC. RL WHO Collaborating Center for Surveillance, Epidemiology and Control of RL Influenza, Influenza Division, Centers for Disease Control and Prevention, RL 1600 Clifton Road, N.E., Atlanta, GA 30333, USA XX DR MD5; 9bbf6267954356629c8238a3dd7ba8a7. XX CC ##FluData-START## CC EPI_ISOLATE_ID :: EPI_ISL_409560 CC NAME :: A/Vermont/26/2019 CC TYPE :: H1N1 CC Segment_name :: NS CC HOST_AGE :: 71 CC HOST_GENDER :: M CC PASSAGE :: Original CC LOCATION :: United States / Vermont CC COLLECT_DATE :: 13-Nov-2019 CC Lineage :: A(H1N1)pdm09 CC SPECIMEN_ID :: 19-010266-VIR-01 ORIGINAL CC SENDER_LAB :: Vermont Department of Health Laboratory CC SEQLAB_SAMPLE_ID :: 3026054618 CC EPI_SEQUENCE_ID :: EPI1687132 CC ##FluData-END## XX FH Key Location/Qualifiers FH FT source 1..865 FT /organism="Influenza A virus" FT /segment="8" FT /host="Homo sapiens" FT /strain="A/Vermont/26/2019" FT /serotype="H1N1" FT /mol_type="viral cRNA" FT /country="USA:Vermont" FT /collection_date="13-Nov-2019" FT /db_xref="taxon:11320" FT gene 15..852 FT /gene="NEP" FT /gene_synonym="NS2" FT CDS join(15..44,517..852) FT /codon_start=1 FT /gene="NEP" FT /gene_synonym="NS2" FT /product="nuclear export protein" FT /note="nonstructural protein 2" FT /protein_id="QIJ23620.1" FT /translation="MESNTMSSFQDILMRMSKMQLGSSSEDLSGMVTRFESLKIYRDSL FT GEAVMRMGDLHYLQSRNEKWREQLGQKFEEIRWLIEEIRHRLKATENSFEQITFMQALQ FT LLLEVEQEIRAFSFQLI" FT gene 15..674 FT /gene="NS1" FT CDS 15..674 FT /codon_start=1 FT /gene="NS1" FT /product="nonstructural protein 1" FT /protein_id="QIJ23619.1" FT /translation="MESNTMSSFQVDCFLWHIRKRFADNGLGDAPFLDRLRRDQKSLKG FT RGNTLGLDIKTATLVGKQIVEWILKEESSETLRMAIASVPTSRYISDMTLEEMSRDWFM FT LMPRQKIIGPLCVRLDQAVMDKNIVLEANFSVIFNRLETLILLRAFTEEGTIVGEISPL FT PSLPGHTYEDVKNAVGVLIGGLEWNGNTVRVSENIQRFAWRSCDENGRPSLPPEQK" XX SQ Sequence 865 BP; 281 A; 165 C; 204 G; 215 T; 0 other; gtgacaaaaa cataatggaa tccaacacca tgtcaagctt tcaggtagat tgttttcttt 60 ggcatattcg caagcgattt gcagacaatg gattgggtga tgccccattc cttgatcggc 120 tacgccgaga tcaaaagtcc ttaaaaggaa gaggcaacac ccttggcctc gacatcaaaa 180 cagccactct tgttgggaaa caaattgtgg aatggatttt gaaagaggaa tccagcgaga 240 cacttagaat ggcaattgca tctgtaccta cttcgcgcta catttctgac atgaccctcg 300 aggaaatgtc acgagactgg ttcatgctta tgcctaggca aaagataata ggccctcttt 360 gcgtgcgatt ggaccaggcg gtcatggata agaacatagt actggaagca aacttcagtg 420 taatcttcaa ccgattagag accttgatac tactaagggc tttcactgag gagggaacaa 480 tagttggaga aatttcacca ttaccttctc ttccaggaca tacttatgag gatgtcaaaa 540 atgcagttgg ggtcctcatc ggaggacttg agtggaatgg taacacggtt cgagtctctg 600 aaaatataca gagattcgct tggagaagct gtgatgagaa tgggagacct tcactacctc 660 cagagcagaa atgagaagtg gcgggaacaa ttgggacaga aatttgagga aataagatgg 720 ttaattgaag aaatacgaca cagattgaaa gcgacagaga atagtttcga acaaataaca 780 tttatgcaag ccttacaact actgcttgaa gtagagcaag agataagagc tttctcgttt 840 cagcttattt aatgataaaa aacac 865 // ID MT167148; SV 1; linear; viral cRNA; STD; VRL; 2316 BP. XX AC MT167148; XX PR Project:PRJNA37813; XX DT 17-MAR-2020 (Rel. 144, Created) DT 17-MAR-2020 (Rel. 144, Last updated, Version 1) XX DE Influenza A virus (A/South Carolina/18/2019(H1N1)) segment 1 polymerase PB2 DE (PB2) gene, complete cds. XX KW . XX OS Influenza A virus OC Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Insthoviricetes; OC Articulavirales; Orthomyxoviridae; Alphainfluenzavirus. XX RN [1] RP 1-2316 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT "Influenza Sequencing Activity group"; RL Unpublished. XX RN [2] RP 1-2316 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT ; RL Submitted (09-MAR-2020) to the INSDC. RL WHO Collaborating Center for Surveillance, Epidemiology and Control of RL Influenza, Influenza Division, Centers for Disease Control and Prevention, RL 1600 Clifton Road, N.E., Atlanta, GA 30333, USA XX DR MD5; fefd0f91277a3887ec303b1165361175. XX CC ##FluData-START## CC EPI_ISOLATE_ID :: EPI_ISL_409557 CC NAME :: A/South Carolina/18/2019 CC TYPE :: H1N1 CC Segment_name :: PB2 CC HOST_AGE :: 7 CC HOST_GENDER :: M CC PASSAGE :: Original CC LOCATION :: United States / South Carolina CC COLLECT_DATE :: 28-Dec-2019 CC Lineage :: A(H1N1)pdm09 CC RESIST_TO_OSELTAMIVIR :: Sensitive CC RESIST_TO_ZANAMVIR :: Sensitive CC SPECIMEN_ID :: 2001060058 ORIGINAL CC SENDER_LAB :: South Carolina Department of Health CC SEQLAB_SAMPLE_ID :: 3026054614 CC EPI_SEQUENCE_ID :: EPI1687119 CC ##FluData-END## XX FH Key Location/Qualifiers FH FT source 1..2316 FT /organism="Influenza A virus" FT /segment="1" FT /host="Homo sapiens" FT /strain="A/South Carolina/18/2019" FT /serotype="H1N1" FT /mol_type="viral cRNA" FT /country="USA:South Carolina" FT /collection_date="28-Dec-2019" FT /db_xref="taxon:11320" FT gene 16..2295 FT /gene="PB2" FT CDS 16..2295 FT /codon_start=1 FT /gene="PB2" FT /product="polymerase PB2" FT /protein_id="QIJ23621.1" FT /translation="MERIKELRDLMSQSRTREILTKTTVDHMAIIKKYTSGRQEKNPAL FT RMKWMMAMKYPITADKRIMDMIPERNEQGQTLWSKINDAGSDRVMVSPLAVTWWNRNGP FT TTSTVHYPKVYKTYFEKVERLKHGTFGPVHFRNQVKIRRRVDTNPGHADLSAKEAQDVI FT MEVVFPNEVGARILTSESQLAITKEKKEELQNCKIAPLMVAYMLERELVRKTRFLPVAG FT GTSSVYIEVLHLTQGTCWEQMYTPGGEVRNDDVDQSLIIAARNIVRRAAVSADPLASLL FT EMCHSTQIGGVKMVDILKQNPTEEQAVDICKAAIGLRISSSFSFGGFTFKRTSGSSVKK FT EEEMLTGNLQTLKLRVHEGYEEFTMVGRRATAILRKATRRLIQLIVSGRDEQSIAEAII FT VAMVFSQEDCMIKAVRGDLNFVNRANQRLNPMHQLLRHFQKDAKVLFQNWGIETIDNVM FT GMIGILPDMTPSTEMSLRGIRVSKMGVDEYSSTERVVVSIDRFLRVRDQRGNVLLSPEE FT VSETQGTEKLTITYSSSMMWEINGPESVLVNTYQWIIRNWEIVKIQWSQDPTMLYNKME FT FEPFQSLVPKATRSRYSGFVRTLFQQMRDVLGTFDTVQIIKLLPFTAAPPEQSRMQFSS FT LTVNVRGSGLRILVRGNSPVFNYNKATKRLTILGKDAGALTEDPDEGTSGVESAVLRGF FT LILGKEDKRYGPALSINELSNLAKGEKANVLIGQGDIVLVMKRKRDSSILTDSQTATKR FT IRMAIN" XX SQ Sequence 2316 BP; 793 A; 432 C; 585 G; 506 T; 0 other; tcaaatatat tcaatatgga gagaataaaa gagctgagag atctaatgtc gcagtcccgc 60 actcgcgaga tactcactaa gaccactgtg gaccatatgg ccatcatcaa aaagtacaca 120 tcgggaaggc aagagaagaa ccccgcgctc agaatgaagt ggatgatggc aatgaaatac 180 ccaattacgg cagacaagag aataatggac atgatcccag agaggaatga acaaggacaa 240 accctctgga gcaaaataaa cgatgctgga tcagaccgag tgatggtatc acctctggca 300 gtaacatggt ggaataggaa tggtccaaca acaagtacag ttcattaccc taaggtatat 360 aaaacttatt tcgaaaaggt cgaaaggttg aaacatggta ccttcggccc tgtccacttc 420 agaaatcaag ttaaaataag gaggagagtt gatacaaacc ctggccatgc agatctcagt 480 gccaaggagg cacaggatgt gattatggaa gttgttttcc caaatgaagt gggggcaaga 540 atactgacat cagagtcaca gctggcaata acaaaagaga agaaagaaga gctccagaat 600 tgtaaaattg ctcccttgat ggtggcgtac atgctagaaa gagaattggt ccgtaaaaca 660 aggtttctcc cggtagccgg tgggacaagc agtgtttata ttgaggtgtt gcacttgacc 720 caagggacgt gctgggagca gatgtacact ccaggaggag aagtgagaaa tgatgatgtt 780 gaccaaagct tgattatcgc tgctagaaac atagtaagaa gagcagcagt gtcagcagac 840 ccattagcat ctctcttgga aatgtgccac agcacacaga ttggaggtgt gaagatggtg 900 gacatcctta aacagaatcc aactgaggag caagccgtag acatatgcaa ggcagcaata 960 gggttgagga tcagctcatc tttcagtttt ggtgggttca ctttcaaaag gacaagcgga 1020 tcatcagtca agaaagaaga agaaatgcta acgggcaacc tccaaacact gaaattaaga 1080 gtacatgaag ggtatgaaga attcacaatg gttgggagaa gagcaacagc tattctcaga 1140 aaggcaacca ggagattgat ccaattaata gtaagcggga gagacgagca gtcaatagct 1200 gaagcaataa ttgtggccat ggtattctca caagaggatt gcatgatcaa agcagttagg 1260 ggcgatctga actttgtcaa tagggcaaac cagagactga atcccatgca ccaactcttg 1320 aggcatttcc aaaaagatgc aaaagtgctt ttccagaact ggggaattga aaccatcgac 1380 aatgtgatgg gaatgatcgg aatactgccc gacatgaccc caagtacgga gatgtcactg 1440 agaggaataa gagtcagcaa gatgggagta gatgaatact ccagcacgga gagagtggta 1500 gtgagtattg accgattttt gagggttaga gatcaaagag gaaacgtact gttgtctccc 1560 gaagaagtta gtgaaacgca aggaactgag aagttaacaa taacttattc gtcatcaatg 1620 atgtgggaga tcaacggccc tgagtcagtg ctagtcaaca cttatcaatg gataatcaga 1680 aactgggaaa ttgtgaaaat tcaatggtca caagacccca caatgttata caacaaaatg 1740 gaatttgaac catttcagtc tcttgttcct aaggcaacca gaagccggta cagtggattc 1800 gtaaggacac tgttccagca aatgagggat gtgcttggga catttgacac tgttcaaata 1860 ataaaacttc tcccctttac tgctgctcca ccagaacaga gcaggatgca attttcttca 1920 ttgactgtga atgtgagagg atcagggtta aggatactgg taagaggcaa ttctccagta 1980 ttcaattaca acaaggcaac caaacgactt acgattcttg gaaaggatgc aggtgcattg 2040 actgaagatc cagatgaagg cacatctggg gtggagtctg ctgtcctgag aggattcctc 2100 attttaggca aagaagacaa gagatatggc ccagcattaa gcatcaatga actgagcaat 2160 cttgcaaaag gagagaaagc taatgtgcta attgggcagg gggacatagt gttagtaatg 2220 aaacgaaaac gggactctag catacttact gacagccaga cagcgaccaa aagaattcgg 2280 atggccatca attagtgtcg aattgtttaa aaacga 2316 // ID MT167149; SV 1; linear; viral cRNA; STD; VRL; 2208 BP. XX AC MT167149; XX PR Project:PRJNA37813; XX DT 17-MAR-2020 (Rel. 144, Created) DT 17-MAR-2020 (Rel. 144, Last updated, Version 1) XX DE Influenza A virus (A/South Carolina/18/2019(H1N1)) segment 3 polymerase PA DE (PA) and PA-X protein (PA-X) genes, complete cds. XX KW . XX OS Influenza A virus OC Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Insthoviricetes; OC Articulavirales; Orthomyxoviridae; Alphainfluenzavirus. XX RN [1] RP 1-2208 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT "Influenza Sequencing Activity group"; RL Unpublished. XX RN [2] RP 1-2208 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT ; RL Submitted (09-MAR-2020) to the INSDC. RL WHO Collaborating Center for Surveillance, Epidemiology and Control of RL Influenza, Influenza Division, Centers for Disease Control and Prevention, RL 1600 Clifton Road, N.E., Atlanta, GA 30333, USA XX DR MD5; 804a8310a291a0046aa4adbfed800b7a. XX CC ##FluData-START## CC EPI_ISOLATE_ID :: EPI_ISL_409557 CC NAME :: A/South Carolina/18/2019 CC TYPE :: H1N1 CC Segment_name :: PA CC HOST_AGE :: 7 CC HOST_GENDER :: M CC PASSAGE :: Original CC LOCATION :: United States / South Carolina CC COLLECT_DATE :: 28-Dec-2019 CC Lineage :: A(H1N1)pdm09 CC RESIST_TO_OSELTAMIVIR :: Sensitive CC RESIST_TO_ZANAMVIR :: Sensitive CC SPECIMEN_ID :: 2001060058 ORIGINAL CC SENDER_LAB :: South Carolina Department of Health CC SEQLAB_SAMPLE_ID :: 3026054614 CC EPI_SEQUENCE_ID :: EPI1687116 CC ##FluData-END## XX FH Key Location/Qualifiers FH FT source 1..2208 FT /organism="Influenza A virus" FT /segment="3" FT /host="Homo sapiens" FT /strain="A/South Carolina/18/2019" FT /serotype="H1N1" FT /mol_type="viral cRNA" FT /country="USA:South Carolina" FT /collection_date="28-Dec-2019" FT /db_xref="taxon:11320" FT gene 13..2163 FT /gene="PA" FT CDS 13..2163 FT /codon_start=1 FT /gene="PA" FT /product="polymerase PA" FT /protein_id="QIJ23622.1" FT /translation="MEDFVRQCFNPMIVELAEKAMKEYGEDPKIETNKFAAICTHLEVC FT FMYSDFHFIDERGESIIVESGDPNALLKHRFEIIEGRDRIMAWTVVNSICNTTGIEKPK FT FLPDLYDYKENRFIEIGVTRREVHIYYLEXANKIKSEKTHIHIFSFTGEEMATKADYTL FT DEESRARIKTRLFTIRQEMASRSLWDSFRQSERGEETIEEKFEITGTMRRLADQSLPPN FT FSSLENFRAYVDGFEPNGCIEGKLSQMSKEVNAKIEPFLRTTPRPLRLPDGPLCHQRSK FT FLLMDALKLSIEDPSHEGEGIPLYDAIKCMKTFFGWKEPKIVKPHEKGVNPNYLMAWKQ FT VLAELQDIENEEKIPRTKNMKKTSQLKWALGENMAPEKVDFDDCKDVGDLKQYDSDEPE FT PRSLASWVQNEFNKACELTDSSWIELDEIGEDVAPIEHXASMRRNYFTAEVSHCRATEY FT IMKGVYINTALLNASCAAMNDFQLIPMISKCRTKEGRRKTNLYGFIIKGKSHLRNDTDV FT VNFVSMEFSLTDPRLEPHKWEKYCVLEIXDMLLRTAIGQVSRPMFLYVRTNGTSKIKMK FT WGMEMRRCLLQSLQQIESMIEAESSVKEKDMTKEFFENKSETWPIGESPRGVEEGSIGK FT VCRTLLAKSVFNSLYASPQLEGFSAESRKLLLIVQALRDNLEPGTFDLGGLYEAIEECL FT INDPWVLLNASWFNSFLTHALK" FT gene 13..712 FT /gene="PA-X" FT CDS join(13..582,584..712) FT /codon_start=1 FT /ribosomal_slippage FT /gene="PA-X" FT /product="PA-X protein" FT /protein_id="QIJ23623.1" FT /translation="MEDFVRQCFNPMIVELAEKAMKEYGEDPKIETNKFAAICTHLEVC FT FMYSDFHFIDERGESIIVESGDPNALLKHRFEIIEGRDRIMAWTVVNSICNTTGIEKPK FT FLPDLYDYKENRFIEIGVTRREVHIYYLEXANKIKSEKTHIHIFSFTGEEMATKADYTL FT DEESRARIKTRLFTIRQEMASRSLWDSFVSPKEAKKQLKKSLKLQELCAGLPTKVSHQT FT SPALKTSEPM" XX SQ Sequence 2208 BP; 743 A; 416 C; 513 G; 533 T; 3 other; tactgatcca aaatggaaga ctttgtgcga caatgcttca atccaatgat cgtcgagctt 60 gcggaaaagg caatgaaaga atatggggaa gaccccaaaa ttgaaactaa taagtttgct 120 gcaatttgca cacatttgga agtttgtttc atgtattcgg atttccattt cattgatgaa 180 cggggtgaat caataattgt agaatctggt gacccaaatg cactattgaa gcaccgattt 240 gagataattg aaggaagaga ccgaatcatg gcttggacag tggtgaacag tatatgtaac 300 acaacaggga tagagaagcc taaatttctt cctgatttgt atgattacaa agagaaccgg 360 ttcattgaaa ttggagtaac acggagagaa gttcacatat attacctaga gmaagccaac 420 aaaataaaat ctgagaagac acacattcac atcttttcat tcactggaga ggagatggcc 480 accaaagcgg actacactct tgacgaagaa agcagagcaa gaatcaaaac taggcttttc 540 actataagac aagaaatggc cagtaggagt ctatgggatt cttttcgtca gtccgaaaga 600 ggcgaagaaa caattgaaga aaagtttgaa attacaggaa ctatgcgcag gcttgccgac 660 caaagtctcc caccaaactt ctccagcctt gaaaacttca gagcctatgt agatggattc 720 gagccgaacg gctgcattga gggtaagctt tcccaaatgt caaaagaagt gaacgccaaa 780 attgaaccat tcttgaggac gacaccacgc cctctcagat tacctgatgg acctctttgc 840 catcagcggt caaagttcct gctgatggat gctctgaaat taagcattga agacccgagt 900 cacgaggggg aaggaatacc actatatgat gcaatcaaat gcatgaagac attctttggc 960 tggaaagagc ctaaaatagt caaaccacat gagaaaggcg taaatcccaa ttacctcatg 1020 gcttggaagc aggtgctagc agagctacag gacattgaaa atgaagagaa aatcccaagg 1080 acaaagaaca tgaagaaaac aagccaattg aagtgggcac tcggtgaaaa tatggcacct 1140 gaaaaagtgg actttgatga ctgtaaagat gttggagacc ttaaacagta tgacagtgat 1200 gagccagagc ccagatctct agcaagctgg gtccaaaatg aattcaataa ggcatgtgaa 1260 ttgactgatt caagctggat agaacttgat gaaataggag aagatgttgc cccaattgaa 1320 catatrgcaa gcatgaggag gaactatttt acagcagaag tgtctcactg cagggctact 1380 gaatacataa tgaagggagt gtacataaat acggccttgc ttaatgcatc ctgtgcagcc 1440 atgaatgact ttcagctgat tccaatgata agcaaatgta ggaccaaaga aggaagacgg 1500 aaaacaaacc tttatgggtt cattataaaa ggaaagtctc atttgagaaa tgatactgat 1560 gtggtgaact ttgtaagtat ggagttctca ctcactgatc caagactgga accacacaaa 1620 tgggaaaaat actgtgttct tgaaatarga gacatgctat tgaggactgc gataggtcaa 1680 gtgtcgaggc ccatgttcct atatgtgaga accaatggaa cctccaagat caagatgaaa 1740 tggggcatgg aaatgaggcg ctgccttctt caatctcttc aacagattga gagcatgatt 1800 gaagccgagt cttctgtcaa agagaaagac atgaccaagg aattctttga aaacaaatcg 1860 gaaacatggc caatcggaga atcacccagg ggagtggagg aaggctctat tggaaaagtg 1920 tgcagaacct tactggcaaa atctgtgttc aacagtctat atgcttctcc acaacttgag 1980 gggttttcgg ctgaatcaag aaaattgctt ctcattgttc aggcacttag ggacaacctg 2040 gaacctggaa cctttgatct tggggggcta tatgaagcaa tcgaggagtg cttgattaat 2100 gatccctggg ttttgcttaa tgcatcttgg ttcaactcct tcctcacaca tgcactgaag 2160 tagttgtggc aatgctacta tttgctatcc atattgtcca aaaaagta 2208 // ID MT167150; SV 1; linear; viral cRNA; STD; VRL; 1752 BP. XX AC MT167150; XX PR Project:PRJNA37813; XX DT 17-MAR-2020 (Rel. 144, Created) DT 17-MAR-2020 (Rel. 144, Last updated, Version 1) XX DE Influenza A virus (A/South Carolina/18/2019(H1N1)) segment 4 hemagglutinin DE (HA) gene, complete cds. XX KW . XX OS Influenza A virus OC Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Insthoviricetes; OC Articulavirales; Orthomyxoviridae; Alphainfluenzavirus. XX RN [1] RP 1-1752 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT "Influenza Sequencing Activity group"; RL Unpublished. XX RN [2] RP 1-1752 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT ; RL Submitted (09-MAR-2020) to the INSDC. RL WHO Collaborating Center for Surveillance, Epidemiology and Control of RL Influenza, Influenza Division, Centers for Disease Control and Prevention, RL 1600 Clifton Road, N.E., Atlanta, GA 30333, USA XX DR MD5; 21a693e550293538218417787ca5dae9. XX CC ##FluData-START## CC EPI_ISOLATE_ID :: EPI_ISL_409557 CC NAME :: A/South Carolina/18/2019 CC TYPE :: H1N1 CC Segment_name :: HA CC HOST_AGE :: 7 CC HOST_GENDER :: M CC PASSAGE :: Original CC LOCATION :: United States / South Carolina CC COLLECT_DATE :: 28-Dec-2019 CC Lineage :: A(H1N1)pdm09 CC RESIST_TO_OSELTAMIVIR :: Sensitive CC RESIST_TO_ZANAMVIR :: Sensitive CC SPECIMEN_ID :: 2001060058 ORIGINAL CC SENDER_LAB :: South Carolina Department of Health CC SEQLAB_SAMPLE_ID :: 3026054614 CC EPI_SEQUENCE_ID :: EPI1687128 CC ##FluData-END## XX FH Key Location/Qualifiers FH FT source 1..1752 FT /organism="Influenza A virus" FT /segment="4" FT /host="Homo sapiens" FT /strain="A/South Carolina/18/2019" FT /serotype="H1N1" FT /mol_type="viral cRNA" FT /country="USA:South Carolina" FT /collection_date="28-Dec-2019" FT /db_xref="taxon:11320" FT gene 21..1721 FT /gene="HA" FT CDS 21..1721 FT /codon_start=1 FT /gene="HA" FT /product="hemagglutinin" FT /function="receptor binding and fusion protein" FT /protein_id="QIJ23624.1" FT /translation="MKAILVVLLYTFTTANADTLCIGYHANNSTDTVDTVLEKNVTVTH FT SVNLLEDKHNGKLCKLRGVAPLHLGKCNIAGWILGNPECESLSTARSWSYIVETSNSDN FT GTCYPGDFINYEELREQLSSVSSFERFEIFPKTSSWPNHDSDKGVTAACPHAGAKSFYK FT NLIWLVKKGNSYPKLNQTYINDKGKEVLVLWGIHHPPTIAAQESLYQNADAYVFVGTSR FT YSKKFKPEIATRPKVRDQEGRMNYYWTLVEPGDKITFEATGNLVVPRYAFTMERDAGSG FT IIISDTPVHDCNTTCQTPEGAINTSLPFQNVHPITIGKCPKYVKSTKLRLATGLRNVPS FT IQSRGLFGAIAGFIEGGWTGMVDGWYGYHHQNEQGSGYAADLKSTQNAIDKITNKVNSV FT IEKMNTQFTAVGKEFNHLEKRIENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSN FT VKNLYEKVRNQLKNNAKEIGNGCFEFYHKCDNTCMESVKNGTYDYPKYSEEAKLNREKI FT DGVKLESTRIYQILAIYSTVASSLVLVVSLGAISFWMCSNGSLQCRICI" FT sig_peptide 21..71 FT /gene="HA" FT mat_peptide 72..1052 FT /gene="HA" FT /product="HA1" FT mat_peptide 1053..1718 FT /gene="HA" FT /product="HA2" XX SQ Sequence 1752 BP; 628 A; 326 C; 386 G; 412 T; 0 other; ggaaaacaaa agcaacaaaa atgaaggcaa tactagtagt tctgctgtat acatttacaa 60 ccgcaaatgc agacacatta tgtataggtt atcatgcgaa caattcaaca gacactgtag 120 acacagtact agaaaagaat gtaacagtaa cacactctgt caatcttctg gaagacaagc 180 ataacggaaa actatgcaaa ctaagagggg tagccccatt gcatttgggt aaatgtaaca 240 ttgctggctg gatcctggga aatccagagt gtgaatcact ctccacagca aggtcatggt 300 cctacattgt ggaaacatct aattcagaca atggaacgtg ttacccagga gatttcatca 360 attatgagga gctaagagag caattgagct cagtgtcatc atttgaaagg tttgaaatat 420 tccccaagac aagttcatgg cctaatcatg actcggacaa aggtgtaacg gcagcatgtc 480 ctcacgctgg agcaaaaagc ttctacaaaa acttgatatg gctggttaaa aaaggaaatt 540 catacccaaa gctcaaccaa acctacatta atgataaagg gaaagaagtc ctcgtgctgt 600 ggggcattca ccatccacct actattgctg cccaagaaag tctctatcag aatgcagatg 660 catatgtttt tgtggggaca tcaagataca gcaagaagtt caagccggaa atagcaacaa 720 gacccaaagt gagggatcaa gaagggagaa tgaactatta ctggacacta gtagaaccgg 780 gagacaaaat aacattcgaa gcaactggaa atctagtggt accgagatat gcattcacaa 840 tggaaagaga tgctggatct ggtattatca tttcagatac accagtccac gattgcaata 900 caacttgtca gacacccgag ggtgctataa acaccagcct cccatttcag aatgtacatc 960 cgattacaat tgggaaatgt ccaaagtatg taaaaagcac aaaattgaga ctggccacag 1020 gattgaggaa tgtcccgtct attcaatcta gaggcctatt cggggccatt gctggcttca 1080 ttgaaggggg gtggacaggg atggtagatg gatggtacgg ttatcaccat caaaatgagc 1140 aggggtcagg atatgcagcc gatctgaaga gtacacaaaa tgccattgat aagattacta 1200 acaaagtaaa ttctgttatt gaaaagatga atacacagtt cacagcagtg ggtaaagagt 1260 tcaaccacct tgaaaaaaga atagagaatc taaataaaaa agttgatgat ggtttcctgg 1320 acatttggac ttacaatgcc gaactgttgg ttctactgga aaacgaaaga actttggact 1380 atcacgattc aaatgtgaag aacttgtatg aaaaagtaag aaaccagtta aaaaacaatg 1440 ccaaggaaat tggaaacggc tgctttgaat tttaccacaa atgcgacaac acatgcatgg 1500 aaagtgtcaa gaatgggact tatgactacc caaaatactc agaggaagca aaattaaaca 1560 gagaaaaaat agatggagta aagctggaat caacaaggat ctaccagatt ttggcgatct 1620 attcaactgt tgccagttca ttggtactgg tagtctccct gggggcaatc agcttctgga 1680 tgtgctctaa tgggtctcta cagtgtagaa tatgtattta acattaggat ttcagaatca 1740 tgagaaaaac ac 1752 // ID MT167151; SV 1; linear; viral cRNA; STD; VRL; 1540 BP. XX AC MT167151; XX PR Project:PRJNA37813; XX DT 17-MAR-2020 (Rel. 144, Created) DT 17-MAR-2020 (Rel. 144, Last updated, Version 1) XX DE Influenza A virus (A/South Carolina/18/2019(H1N1)) segment 5 nucleocapsid DE protein (NP) gene, complete cds. XX KW . XX OS Influenza A virus OC Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Insthoviricetes; OC Articulavirales; Orthomyxoviridae; Alphainfluenzavirus. XX RN [1] RP 1-1540 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT "Influenza Sequencing Activity group"; RL Unpublished. XX RN [2] RP 1-1540 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT ; RL Submitted (09-MAR-2020) to the INSDC. RL WHO Collaborating Center for Surveillance, Epidemiology and Control of RL Influenza, Influenza Division, Centers for Disease Control and Prevention, RL 1600 Clifton Road, N.E., Atlanta, GA 30333, USA XX DR MD5; 83f6ae4b6a8d56e287dd7c6080d36dcb. XX CC ##FluData-START## CC EPI_ISOLATE_ID :: EPI_ISL_409557 CC NAME :: A/South Carolina/18/2019 CC TYPE :: H1N1 CC Segment_name :: NP CC HOST_AGE :: 7 CC HOST_GENDER :: M CC PASSAGE :: Original CC LOCATION :: United States / South Carolina CC COLLECT_DATE :: 28-Dec-2019 CC Lineage :: A(H1N1)pdm09 CC RESIST_TO_OSELTAMIVIR :: Sensitive CC RESIST_TO_ZANAMVIR :: Sensitive CC SPECIMEN_ID :: 2001060058 ORIGINAL CC SENDER_LAB :: South Carolina Department of Health CC SEQLAB_SAMPLE_ID :: 3026054614 CC EPI_SEQUENCE_ID :: EPI1687111 CC ##FluData-END## XX FH Key Location/Qualifiers FH FT source 1..1540 FT /organism="Influenza A virus" FT /segment="5" FT /host="Homo sapiens" FT /strain="A/South Carolina/18/2019" FT /serotype="H1N1" FT /mol_type="viral cRNA" FT /country="USA:South Carolina" FT /collection_date="28-Dec-2019" FT /db_xref="taxon:11320" FT gene 34..1530 FT /gene="NP" FT CDS 34..1530 FT /codon_start=1 FT /gene="NP" FT /product="nucleocapsid protein" FT /protein_id="QIJ23625.1" FT /translation="MASQGTKRSYEQMETGGERQDTTEIRASVGRMIGGIGRFYIQMCT FT ELKLSDYDGRLIQNSITIERMVLSSFDERRNKYLEEHPSAGKDPKKTGGPIYRRIDGKW FT TRELILYDKEEIRRVWRQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRM FT CSLMQGSTLPRRSGAAGAAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTRVAYERM FT CNILKGKFQTAAQRAMMDQVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVY FT GLAVASGHDFEREGYSLVGIDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFED FT LRVSSFIRGKKVIPRGKLSTRGVQIASNENVETMDSNTLELRSRYWAIRTRSGGNTNQQ FT KASAGQISVQPTFSVQRNLPFERATIMAAFSGNNEGRTSDMRTEIIRMMESAKPEDLSF FT QGRGVFELSDEKATNPIVPSFDMSNEGSYFFGDNAEEYDN" XX SQ Sequence 1540 BP; 529 A; 295 C; 389 G; 327 T; 0 other; gtagataatc actcaatgag tgacatcgaa gccatggcgt ctcaaggcac caaacgatca 60 tatgaacaaa tggagactgg tggggagcgc caggatacca cagaaatcag agcatctgtt 120 ggaagaatga ttggtggaat cgggagattc tacatccaaa tgtgcactga actaaaactc 180 agtgattatg atggacgact aatccagaac agcataacaa tagagaggat ggtgctttct 240 tcttttgatg agagaagaaa taaataccta gaagagcatc caagtgctgg gaaggaccct 300 aagaaaacag gaggacccat ctatagaaga atagacggaa aatggacaag agaactcatc 360 ctttatgaca aagaagaaat aagaagagtt tggcgccaag caaacaatgg cgaagatgca 420 acagcaggtc ttactcatat catgatttgg cattccaatc tgaatgatgc cacatatcag 480 aggacaagag cacttgttcg cactggaatg gatcccagaa tgtgctctct aatgcaaggt 540 tcaacacttc ccagaaggtc tggtgccgca ggtgctgcag taaaaggagt tggaacaata 600 gctatggagt taatcagaat gataaaacgt ggaatcaatg accgaaattt ctggaggggt 660 gaaaatggaa gaaggacaag agttgcttat gaaagaatgt gcaatatcct caaaggaaaa 720 tttcaaacag ctgcccagag ggcaatgatg gatcaagtaa gagaaagtcg aaacccagga 780 aacgctgaga ttgaagacct cattttcctg gcacggtcag cactcattct gagaggatca 840 gttgcacata aatcctgcct gcctgcttgt gtgtatgggc ttgcagtagc aagtggccat 900 gactttgaaa gggaagggta ctcactggtc gggatagacc cattcaaatt actccaaaac 960 agtcaagtgg tcagcctgat gagaccaaat gaaaatccag ctcacaagag tcaattggta 1020 tggatggcat gccactctgc tgcatttgaa gatttaagag tatcaagttt cataagagga 1080 aagaaagtga tcccaagagg aaagctttcc acaagagggg ttcagattgc ttcaaatgag 1140 aatgtggaaa ccatggactc caataccctg gaactaagaa gcagatactg ggccataaga 1200 accagaagtg gaggaaatac caatcaacag aaggcatctg caggccagat cagtgtgcag 1260 cctacattct cagtgcagcg aaatctccct tttgaaagag caaccattat ggcagcattc 1320 agcgggaaca atgaaggacg gacatccgat atgcgaacag aaattataag aatgatggaa 1380 agtgcaaagc cagaggattt gtccttccag gggcggggag tcttcgagct ctcggacgaa 1440 aaggcaacga acccgatcgt gccttccttt gacatgagta atgaagggtc ttatttcttc 1500 ggagacaatg cagaggagta tgacaattga agaaaaatac 1540 // ID MT167152; SV 1; linear; viral cRNA; STD; VRL; 1433 BP. XX AC MT167152; XX PR Project:PRJNA37813; XX DT 17-MAR-2020 (Rel. 144, Created) DT 17-MAR-2020 (Rel. 144, Last updated, Version 1) XX DE Influenza A virus (A/South Carolina/18/2019(H1N1)) segment 6 neuraminidase DE (NA) gene, complete cds. XX KW . XX OS Influenza A virus OC Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Insthoviricetes; OC Articulavirales; Orthomyxoviridae; Alphainfluenzavirus. XX RN [1] RP 1-1433 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT "Influenza Sequencing Activity group"; RL Unpublished. XX RN [2] RP 1-1433 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT ; RL Submitted (09-MAR-2020) to the INSDC. RL WHO Collaborating Center for Surveillance, Epidemiology and Control of RL Influenza, Influenza Division, Centers for Disease Control and Prevention, RL 1600 Clifton Road, N.E., Atlanta, GA 30333, USA XX DR MD5; 2748e093f0a5df94e39135dc009273ee. XX CC ##FluData-START## CC EPI_ISOLATE_ID :: EPI_ISL_409557 CC NAME :: A/South Carolina/18/2019 CC TYPE :: H1N1 CC Segment_name :: NA CC HOST_AGE :: 7 CC HOST_GENDER :: M CC PASSAGE :: Original CC LOCATION :: United States / South Carolina CC COLLECT_DATE :: 28-Dec-2019 CC Lineage :: A(H1N1)pdm09 CC RESIST_TO_OSELTAMIVIR :: Sensitive CC RESIST_TO_ZANAMVIR :: Sensitive CC SPECIMEN_ID :: 2001060058 ORIGINAL CC SENDER_LAB :: South Carolina Department of Health CC SEQLAB_SAMPLE_ID :: 3026054614 CC EPI_SEQUENCE_ID :: EPI1687122 CC ##FluData-END## XX FH Key Location/Qualifiers FH FT source 1..1433 FT /organism="Influenza A virus" FT /segment="6" FT /host="Homo sapiens" FT /strain="A/South Carolina/18/2019" FT /serotype="H1N1" FT /mol_type="viral cRNA" FT /country="USA:South Carolina" FT /collection_date="28-Dec-2019" FT /db_xref="taxon:11320" FT gene 9..1418 FT /gene="NA" FT CDS 9..1418 FT /codon_start=1 FT /gene="NA" FT /product="neuraminidase" FT /protein_id="QIJ23626.1" FT /translation="MNPNQKIITIGSICMTIGMANLILQIGNITSIWVSHSIQTGNQSQ FT IETCNKNVITYENNTWVNQTYVNISNNNSAARQSVASVKLAGNSSLCPVSGWAIYSKDN FT SVRIGSKGDVFVIREPFISCSPLECRTFFLTQGALLNDKHSNGTIKDRSPYRTLMSCPI FT GEVPSPYNSRFESVAWSASACHDGTNWLTIGISGPDSGAVAVLKYNGIITDTIKSWRNN FT ILRTQESECACVNGSCFTIMTDGPSDGQASYKIFRIEKGKIIKSVEMKAPNYHYEECSC FT YPDSSEITCVCRDNWHGSNRPWVSFNQNLEYQMGYICSGVFGDNPRPNDKTGSCGPVSS FT NGANGVKGFSFKYGNGVWIGRTKSISSRKGFEMIWDPNGWTGTDNKFSKKQDIVGINEW FT SGYSGSFVQHPELTGLNCIKPCFWVELIRGRPEENTIWTSGSSISFCGVDSDIVGWSWP FT DGAELPFTIDK" XX SQ Sequence 1433 BP; 467 A; 267 C; 331 G; 368 T; 0 other; agtttaaaat gaatccaaac caaaagataa taaccattgg ctctatctgt atgacaattg 60 gaatggctaa cttaatatta caaattggaa acataacctc aatatgggtt agccactcaa 120 ttcaaaccgg aaaccaaagc cagatcgaaa catgcaataa aaacgtcatt acttatgaaa 180 acaatacttg ggtaaatcag acatatgtta acatcagcaa caacaactct gctgctagac 240 agtcagtggc ttccgtgaaa ttagcgggca attcctctct ctgccctgtc agtggatggg 300 ctatatacag taaagacaac agtgtaagaa tcggttccaa gggggatgtg tttgtcataa 360 gggaaccatt catatcatgc tctcccttgg aatgcagaac cttcttcttg actcaagggg 420 ctttgctaaa tgacaaacat tccaatggaa ccatcaaaga cagaagccca tatcgaaccc 480 taatgagctg tcctattggt gaagttccct ctccatacaa ctcaagattt gagtcagtcg 540 cttggtcagc aagtgcttgt catgatggca ccaattggct aacaattgga atttctggcc 600 cagacagtgg ggcagtggct gtgttaaaat acaatggcat aataacagac actatcaaga 660 gttggaggaa caatatattg agaacacaag agtctgaatg tgcatgtgta aatggttctt 720 gctttaccat aatgaccgat ggaccaagtg atggacaggc ctcatacaaa atcttcagaa 780 tagaaaaggg aaagataatc aaatcagtcg aaatgaaagc ccctaattat cactatgagg 840 aatgctcctg ttaccctgat tctagtgaaa tcacatgtgt gtgcagggat aactggcatg 900 gctcgaatcg accgtgggtg tctttcaacc agaatctgga ataccagatg ggatacatat 960 gcagtggggt tttcggagac aatccacgcc ctaatgataa gacaggcagt tgtggtccag 1020 tatcgtctaa tggagcaaat ggggtaaaag gattttcatt caaatacggc aatggtgttt 1080 ggatagggag aactaagagc attagttcaa gaaaaggttt tgagatgatt tgggatccga 1140 atggatggac tgggactgac aataaattct caaaaaagca agatatcgta ggaataaatg 1200 agtggtcagg gtatagcggg agttttgttc agcatccaga actaacaggg ctgaattgta 1260 taaaaccttg cttctgggtt gaactaataa gaggacgacc cgaagagaac acaatctgga 1320 ctagtgggag cagcatatcc ttttgtggtg tagacagtga cattgtgggt tggtcttggc 1380 cagacggtgc tgagttgcca tttaccattg acaagtaatt tgttcaaaaa act 1433 // ID MT167153; SV 1; linear; viral cRNA; STD; VRL; 1002 BP. XX AC MT167153; XX PR Project:PRJNA37813; XX DT 17-MAR-2020 (Rel. 144, Created) DT 17-MAR-2020 (Rel. 144, Last updated, Version 1) XX DE Influenza A virus (A/South Carolina/18/2019(H1N1)) segment 7 matrix protein DE 2 (M2) and matrix protein 1 (M1) genes, complete cds. XX KW . XX OS Influenza A virus OC Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Insthoviricetes; OC Articulavirales; Orthomyxoviridae; Alphainfluenzavirus. XX RN [1] RP 1-1002 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT "Influenza Sequencing Activity group"; RL Unpublished. XX RN [2] RP 1-1002 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT ; RL Submitted (09-MAR-2020) to the INSDC. RL WHO Collaborating Center for Surveillance, Epidemiology and Control of RL Influenza, Influenza Division, Centers for Disease Control and Prevention, RL 1600 Clifton Road, N.E., Atlanta, GA 30333, USA XX DR MD5; 450785b1294558cce6ba4fa395c2af82. XX CC ##FluData-START## CC EPI_ISOLATE_ID :: EPI_ISL_409557 CC NAME :: A/South Carolina/18/2019 CC TYPE :: H1N1 CC Segment_name :: M CC HOST_AGE :: 7 CC HOST_GENDER :: M CC PASSAGE :: Original CC LOCATION :: United States / South Carolina CC COLLECT_DATE :: 28-Dec-2019 CC Lineage :: A(H1N1)pdm09 CC RESIST_TO_OSELTAMIVIR :: Sensitive CC RESIST_TO_ZANAMVIR :: Sensitive CC SPECIMEN_ID :: 2001060058 ORIGINAL CC SENDER_LAB :: South Carolina Department of Health CC SEQLAB_SAMPLE_ID :: 3026054614 CC EPI_SEQUENCE_ID :: EPI1687114 CC ##FluData-END## XX FH Key Location/Qualifiers FH FT source 1..1002 FT /organism="Influenza A virus" FT /segment="7" FT /host="Homo sapiens" FT /strain="A/South Carolina/18/2019" FT /serotype="H1N1" FT /mol_type="viral cRNA" FT /country="USA:South Carolina" FT /collection_date="28-Dec-2019" FT /db_xref="taxon:11320" FT gene 14..995 FT /gene="M2" FT CDS join(14..39,728..995) FT /codon_start=1 FT /gene="M2" FT /product="matrix protein 2" FT /protein_id="QIJ23628.1" FT /translation="MSLLTEVETPTRSEWECRCSGSNDPLVIAANIIGILHLILWITDR FT LFFKCIYRRFKYGLKRGPSTEGVPDSMREEYQQEQQSAVDVDDGHFVNIELE" FT gene 14..772 FT /gene="M1" FT CDS 14..772 FT /codon_start=1 FT /gene="M1" FT /product="matrix protein 1" FT /protein_id="QIJ23627.1" FT /translation="MSLLTEVETYVLSIIPSGPLKAEIAQRLESVFAGKNTDLEALMEW FT LKTRPILSPLTKGILGFVFTLTVPSERGLQRRRFIQNALNGNGDPNNMDRAVKLYKKLK FT REITFHGAKEVSLSYSTGALASCMGLIYNRMGTVTTEAAFGLVCATCEQIADSQHRSHR FT QMATTTNPLIRHENRMVLASTTAKAMEQVAGSSEQAAEAMEVANKTRQMVHAMRTIGTH FT PSSSAGLRDDLLENLQAYQKRMGVQMQRFK" XX SQ Sequence 1002 BP; 301 A; 209 C; 252 G; 240 T; 0 other; tagatgttta aagatgagtc ttctaaccga ggtcgaaacg tacgttcttt ctatcatccc 60 gtcaggcccc ctcaaagccg agatcgcaca gagactggaa agtgtctttg caggaaagaa 120 cacagatctt gaggctctca tggaatggct aaagacaaga ccaatcttgt cacctctgac 180 taagggaatt ttaggatttg tgttcacgct caccgtgccc agtgagcgag gactgcagcg 240 tagacgcttt atccaaaatg ccctaaatgg aaatggggac ccgaacaaca tggatagagc 300 agttaaacta tacaagaaac tcaaaagaga aataacgttc catggggcca aggaggtgtc 360 actaagctat tcaactggtg cacttgcaag ttgcatgggc ctcatataca acaggatggg 420 aacagtgacc acagaagctg ctttcggtct agtttgtgcc acttgtgaac agattgctga 480 ttcacagcat cggtctcaca gacaaatggc tactaccaca aatccactaa tcaggcatga 540 aaacagaatg gtgctggcta gcactacggc aaaggctatg gaacaggtgg ctggatcgag 600 tgaacaggca gcggaggcca tggaggttgc taataagact aggcagatgg tacatgcaat 660 gagaactatt ggaactcatc ctagctccag tgctggtcta agagatgacc ttcttgaaaa 720 tttgcaggcc taccagaagc gaatgggagt gcagatgcag cggttcaaat gatcctctcg 780 tcattgcagc aaacatcatt gggatcttgc acctgatatt gtggattact gatcgtcttt 840 ttttcaaatg catttatcgt cgctttaaat acggtttgaa aagagggcct tctacggaag 900 gagtgcctga ttccatgagg gaagaatatc aacaggagca gcagagtgct gtggatgttg 960 acgatggtca ttttgtcaac atagagctag agtaaaaaac ta 1002 // ID MT167154; SV 1; linear; viral cRNA; STD; VRL; 865 BP. XX AC MT167154; XX PR Project:PRJNA37813; XX DT 17-MAR-2020 (Rel. 144, Created) DT 17-MAR-2020 (Rel. 144, Last updated, Version 1) XX DE Influenza A virus (A/South Carolina/18/2019(H1N1)) segment 8 nuclear export DE protein (NEP) and nonstructural protein 1 (NS1) genes, complete cds. XX KW . XX OS Influenza A virus OC Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Insthoviricetes; OC Articulavirales; Orthomyxoviridae; Alphainfluenzavirus. XX RN [1] RP 1-865 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT "Influenza Sequencing Activity group"; RL Unpublished. XX RN [2] RP 1-865 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT ; RL Submitted (09-MAR-2020) to the INSDC. RL WHO Collaborating Center for Surveillance, Epidemiology and Control of RL Influenza, Influenza Division, Centers for Disease Control and Prevention, RL 1600 Clifton Road, N.E., Atlanta, GA 30333, USA XX DR MD5; 6f3797a5f5af1fe90d84024c7e9863d5. XX CC ##FluData-START## CC EPI_ISOLATE_ID :: EPI_ISL_409557 CC NAME :: A/South Carolina/18/2019 CC TYPE :: H1N1 CC Segment_name :: NS CC HOST_AGE :: 7 CC HOST_GENDER :: M CC PASSAGE :: Original CC LOCATION :: United States / South Carolina CC COLLECT_DATE :: 28-Dec-2019 CC Lineage :: A(H1N1)pdm09 CC RESIST_TO_OSELTAMIVIR :: Sensitive CC RESIST_TO_ZANAMVIR :: Sensitive CC SPECIMEN_ID :: 2001060058 ORIGINAL CC SENDER_LAB :: South Carolina Department of Health CC SEQLAB_SAMPLE_ID :: 3026054614 CC EPI_SEQUENCE_ID :: EPI1687112 CC ##FluData-END## XX FH Key Location/Qualifiers FH FT source 1..865 FT /organism="Influenza A virus" FT /segment="8" FT /host="Homo sapiens" FT /strain="A/South Carolina/18/2019" FT /serotype="H1N1" FT /mol_type="viral cRNA" FT /country="USA:South Carolina" FT /collection_date="28-Dec-2019" FT /db_xref="taxon:11320" FT gene 15..852 FT /gene="NEP" FT /gene_synonym="NS2" FT CDS join(15..44,517..852) FT /codon_start=1 FT /gene="NEP" FT /gene_synonym="NS2" FT /product="nuclear export protein" FT /note="nonstructural protein 2" FT /protein_id="QIJ23630.1" FT /translation="MESNTMSSFQDILMRMSKMQLGSSSEDLSGMVTRFESLKIYRDSL FT GEAVMRMGDLHYLQSRNEKWREQLGQKFEEIRWLIEEIRHRLKATENSFEQITFMQALQ FT LLLEVEQEIRAFSFQLI" FT gene 15..674 FT /gene="NS1" FT CDS 15..674 FT /codon_start=1 FT /gene="NS1" FT /product="nonstructural protein 1" FT /protein_id="QIJ23629.1" FT /translation="MESNTMSSFQVDCFLWHIRKRFADNGLGDAPFLDRLRRDQKSLKG FT RGNTLGLDIKTATLVGKQIVEWILKEESSETLRMAIASVPTSRYISDMTLEEMSRDWFM FT LMPRQKIIGPLCVRLDQAVMDKNIVLEANFSVIFNRLETLVLLRAFTEEGTIVGEISPL FT PSLPGHTYEDVKNAVGVLIGGLEWNGNTVRVSENIQRFAWRSCDENGRPSLPPEQK" XX SQ Sequence 865 BP; 279 A; 165 C; 206 G; 215 T; 0 other; gtgacaaaaa cataatggaa tccaacacca tgtcaagctt tcaggtagac tgttttcttt 60 ggcatattcg caagcgattt gcagacaatg gattgggtga tgccccattc cttgatcggc 120 tacgccgaga tcaaaagtcc ttaaaaggaa gaggcaacac ccttggcctc gacatcaaaa 180 cagccactct tgttgggaaa caaattgtgg aatggatttt gaaagaggaa tccagcgaga 240 cacttagaat ggcaattgca tctgtaccta cttcgcgtta catttctgac atgaccctcg 300 aggaaatgtc acgagactgg ttcatgctta tgcctaggca aaagataata ggccctcttt 360 gcgtgcgatt ggaccaggcg gtcatggata agaacatagt actggaagca aacttcagtg 420 taatcttcaa ccgattagag accttggtac tactaagggc tttcactgag gagggaacaa 480 tagttggaga aatttcacca ttaccttctc ttccaggaca tacttatgag gatgtcaaaa 540 atgcagttgg ggtcctcatc ggaggacttg agtggaatgg taacacggtt cgagtctctg 600 aaaatataca gagattcgct tggagaagct gtgatgagaa tgggagacct tcactacctc 660 cagagcagaa atgagaagtg gcgggaacaa ttgggacaga aatttgagga aataaggtgg 720 ttaattgaag aaatacgaca cagattgaaa gcgacagaga atagtttcga acaaataaca 780 tttatgcaag ccttacaact actgcttgaa gtagagcaag agataagagc tttctcgttt 840 cagcttattt aatgataaaa aacac 865 // ID MT167155; SV 1; linear; viral cRNA; STD; VRL; 2316 BP. XX AC MT167155; XX PR Project:PRJNA37813; XX DT 17-MAR-2020 (Rel. 144, Created) DT 17-MAR-2020 (Rel. 144, Last updated, Version 1) XX DE Influenza A virus (A/Vermont/30/2019(H1N1)) segment 1 polymerase PB2 (PB2) DE gene, complete cds. XX KW . XX OS Influenza A virus OC Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Insthoviricetes; OC Articulavirales; Orthomyxoviridae; Alphainfluenzavirus. XX RN [1] RP 1-2316 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT "Influenza Sequencing Activity group"; RL Unpublished. XX RN [2] RP 1-2316 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT ; RL Submitted (09-MAR-2020) to the INSDC. RL WHO Collaborating Center for Surveillance, Epidemiology and Control of RL Influenza, Influenza Division, Centers for Disease Control and Prevention, RL 1600 Clifton Road, N.E., Atlanta, GA 30333, USA XX DR MD5; f40878738aaec6079ea49ffad6242619. XX CC ##FluData-START## CC EPI_ISOLATE_ID :: EPI_ISL_409565 CC NAME :: A/Vermont/30/2019 CC TYPE :: H1N1 CC Segment_name :: PB2 CC HOST_AGE :: 36 CC HOST_GENDER :: M CC PASSAGE :: Original CC LOCATION :: United States / Vermont CC COLLECT_DATE :: 10-Dec-2019 CC Lineage :: A(H1N1)pdm09 CC SPECIMEN_ID :: 19-010767-VIR-01 ORIGINAL CC SENDER_LAB :: Vermont Department of Health Laboratory CC SEQLAB_SAMPLE_ID :: 3026054622 CC EPI_SEQUENCE_ID :: EPI1687176 CC ##FluData-END## XX FH Key Location/Qualifiers FH FT source 1..2316 FT /organism="Influenza A virus" FT /segment="1" FT /host="Homo sapiens" FT /strain="A/Vermont/30/2019" FT /serotype="H1N1" FT /mol_type="viral cRNA" FT /country="USA:Vermont" FT /collection_date="10-Dec-2019" FT /db_xref="taxon:11320" FT gene 16..2295 FT /gene="PB2" FT CDS 16..2295 FT /codon_start=1 FT /gene="PB2" FT /product="polymerase PB2" FT /protein_id="QIJ23631.1" FT /translation="MERIKELRDLMSQSRTREILTKTTVDHMAIIKKYTSGRQEKNPAL FT RMKWMMAMKYPITADKRIMDIIPERNEQGQTLWSKTNDAGSDRVMVSPLAVTWWNRNGP FT TTSTVHYPKVYKTYFEKVERLKHGTFGPVHFRNQVKIRRRVDTNPGHADLSAKEAQDVI FT MEVVFPNEVGARILTSESQLAITKEKKEELQNCKIAPLMVAYMLERELVRKTRFLPVAG FT GTGSVYIEVLHLTQGTCWEQMYTPGGEVRNDDVDQSLIIAARNIVRRAAVSADPLASLL FT EMCHSTQIGGVKMVDILKQNPTEEQAVDICKAAIGLRISSSFSFGGFTFKRTSGSSIKK FT EEEMLTGNLQTLKLRVHEGYEEFTMVGRRATAILRKATRRLIQLIVSGRDEQSIAEAMI FT VAMVFSQEDCMIKAVRGDLNFVNRANQRLNPMHQLLRHFQKDAKVLFQNWGIETIDNVM FT GMIGILPDMTPSTEMSLRGIRVSKMGVDEYSSTERVVVSIDRFLRVRDQRGNVLLSPEE FT VSETQGTEKLTITYSSSMMWEINGPESVLVNTYQWIIRNWEFVKIQWSQDPTMLYNKME FT FEPFQSLVPKATRSRYSGFVRTLFQQMRDVLGTFDTVQIIKLLPFAAAPPEQSRMQFSS FT LTVNVRGSGLRILVRGNSPVFNYNKATKRLTVLGKDAGALTEDPDEGTSGVESAVLRGF FT LILGKEDKRYGPALSINELSNLAKGEKANVLIGQGDIVLVMKRKRDSSILTDSQTATKR FT IRMAIN" XX SQ Sequence 2316 BP; 787 A; 438 C; 588 G; 503 T; 0 other; tcaaatatat tcaatatgga gagaataaaa gagctgagag atctaatgtc gcagtcccgc 60 actcgcgaga tactcactaa gaccactgtg gaccatatgg ccatcatcaa aaaatacaca 120 tcgggaaggc aagagaagaa ccccgcactc agaatgaagt ggatgatggc aatgaaatac 180 ccaattacgg cagacaagag aataatggac ataatcccag agaggaatga acaaggacaa 240 accctctgga gcaaaacaaa cgatgctgga tcagaccgag tgatggtatc acctctggcc 300 gtaacatggt ggaataggaa tggcccaaca acaagtacag ttcattaccc taaggtatat 360 aaaacttatt tcgaaaaggt cgaaaggttg aaacatggta ccttcggccc tgtccacttc 420 agaaatcaag ttaaaataag gaggagagtt gatacaaacc ctggccatgc agatctcagt 480 gccaaggagg cacaggatgt gattatggaa gttgttttcc caaatgaagt gggggcaaga 540 atactgacat cagagtcaca gctggcaata acaaaagaga agaaagaaga gctccagaat 600 tgtaaaattg ctcccttgat ggtggcgtac atgctagaaa gagaattggt ccgtaaaaca 660 aggtttcttc cggtagccgg tgggacaggc agtgtttata ttgaggtgtt gcatttgacc 720 caagggacgt gctgggagca gatgtacacc ccaggaggag aagtgaggaa tgatgatgtt 780 gaccaaagtt tgatcatcgc tgctagaaac atagtaagaa gagcagcagt gtcagcagac 840 ccattagcat ctctcttgga aatgtgccac agcacacaga ttggaggtgt gaagatggtg 900 gatatcctta aacagaatcc aactgaagag caagccgtag acatatgcaa ggcagcaata 960 gggttgagga tcagctcttc tttcagtttt ggtgggttca ctttcaaaag gacaagcgga 1020 tcatcaatca agaaagaaga agaaatgcta acgggcaacc tccaaacact gaaattaaga 1080 gtacatgaag gatatgaaga attcacaatg gttgggagaa gagcaacagc tattctcaga 1140 aaggcaacca ggaggttgat ccaattaata gtaagcggga gagacgagca gtcaatagct 1200 gaagcaatga ttgtggccat ggtattctca caagaggatt gcatgatcaa agcagttagg 1260 ggcgatctga actttgtcaa tagggcaaac cagagactga atcccatgca ccaactcttg 1320 aggcatttcc aaaaagatgc aaaagtgctt ttccagaact ggggaattga aaccatcgac 1380 aatgtgatgg gaatgatcgg aatactgccc gacatgaccc caagcacgga gatgtcactg 1440 agaggaataa gagtcagcaa gatgggagta gatgaatact ccagcacgga gagagtggtg 1500 gtgagtattg accgattttt gagggttaga gatcaaagag gaaacgtact attgtctccc 1560 gaagaagtca gtgaaacgca aggaactgag aagttgacaa taacttattc gtcatcaatg 1620 atgtgggaga tcaacggccc tgagtcagtg ctagtcaaca cttatcaatg gataatcaga 1680 aactgggaat ttgtgaaaat tcaatggtca caagacccca caatgttata caacaaaatg 1740 gaatttgaac catttcagtc tcttgtccct aaggcaacca gaagccggta cagtggattc 1800 gtaaggacac tgttccagca aatgagggat gtgcttggga catttgacac tgtccaaata 1860 ataaaacttc tcccctttgc tgctgctcca ccagaacaga gcaggatgca attttcttca 1920 ttgactgtga atgtgagagg atcagggtta aggatactgg taagaggcaa ttctccagtg 1980 ttcaattaca acaaggcaac caaacgactt acggttcttg gaaaggatgc aggtgcattg 2040 actgaagatc cagatgaagg cacatctggg gtggagtctg ctgtcctgag aggattcctc 2100 attttaggca aagaagacaa gagatatggc ccagcattaa gcatcaatga actgagcaat 2160 cttgcaaaag gagagaaagc taatgtgcta attgggcagg gggacatagt gttggtaatg 2220 aaacgaaaac gggactctag catacttact gacagccaga cagcgaccaa aagaattcgg 2280 atggccatca attagtgtcg aattgtctaa aaacga 2316 // ID MT167156; SV 1; linear; viral cRNA; STD; VRL; 1752 BP. XX AC MT167156; XX PR Project:PRJNA37813; XX DT 17-MAR-2020 (Rel. 144, Created) DT 17-MAR-2020 (Rel. 144, Last updated, Version 1) XX DE Influenza A virus (A/Vermont/30/2019(H1N1)) segment 4 hemagglutinin (HA) DE gene, complete cds. XX KW . XX OS Influenza A virus OC Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Insthoviricetes; OC Articulavirales; Orthomyxoviridae; Alphainfluenzavirus. XX RN [1] RP 1-1752 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT "Influenza Sequencing Activity group"; RL Unpublished. XX RN [2] RP 1-1752 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT ; RL Submitted (09-MAR-2020) to the INSDC. RL WHO Collaborating Center for Surveillance, Epidemiology and Control of RL Influenza, Influenza Division, Centers for Disease Control and Prevention, RL 1600 Clifton Road, N.E., Atlanta, GA 30333, USA XX DR MD5; beada5adcb0fd75b79e2f1166ce01c6d. XX CC ##FluData-START## CC EPI_ISOLATE_ID :: EPI_ISL_409565 CC NAME :: A/Vermont/30/2019 CC TYPE :: H1N1 CC Segment_name :: HA CC HOST_AGE :: 36 CC HOST_GENDER :: M CC PASSAGE :: Original CC LOCATION :: United States / Vermont CC COLLECT_DATE :: 10-Dec-2019 CC Lineage :: A(H1N1)pdm09 CC SPECIMEN_ID :: 19-010767-VIR-01 ORIGINAL CC SENDER_LAB :: Vermont Department of Health Laboratory CC SEQLAB_SAMPLE_ID :: 3026054622 CC EPI_SEQUENCE_ID :: EPI1687185 CC ##FluData-END## XX FH Key Location/Qualifiers FH FT source 1..1752 FT /organism="Influenza A virus" FT /segment="4" FT /host="Homo sapiens" FT /strain="A/Vermont/30/2019" FT /serotype="H1N1" FT /mol_type="viral cRNA" FT /country="USA:Vermont" FT /collection_date="10-Dec-2019" FT /db_xref="taxon:11320" FT gene 21..1721 FT /gene="HA" FT CDS 21..1721 FT /codon_start=1 FT /gene="HA" FT /product="hemagglutinin" FT /function="receptor binding and fusion protein" FT /protein_id="QIJ23632.1" FT /translation="MKAILVVLLYTFTTANADTLCIGYHANNSTDTVDTVLEKNVTVTH FT SVNLLEDKHNGKLCKLRGVAPLHLGKCNIAGWILGNPECESLSTARSWSYIVETSNSDN FT GTCYPGDFIDYEELREQLSSVSSFERFEIFPKTSSWPNHDSNNGVTAACSHAGAKSFYK FT NLIWLVKKGNSYPMLNQTYINDKGKEVLVLWGIHHPPTTADQQSLYQNADAYVFVGTSR FT YSKKFKPEIAKRPKVRDQEGRMNYYWTLVDPGDKITFEATGNLVVPRYAFTMERDAGSG FT IIISDTPIHDCNTTCQTPEGAINTSLPFQNVNPITIGKCPKYVKSTKLRLATGLRNVPS FT IQSRGLFGAIAGFIEGGWTGMVDGWYGYHHQNEQGSGYAADLKSTQNAIDKITNKVNSV FT IEKMNTQFTAVGKEFNHLEKRIENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSN FT VKNLYEKVRNQLKSNAKEIGNGCFEFYHKCDNTCMESVKNGTYDYPKYSEEAKLNREKI FT DGVKLESTRIYQILAIYSTAASSLVLVVSLGAISFWMCSNGSLQCRICI" FT sig_peptide 21..71 FT /gene="HA" FT mat_peptide 72..1052 FT /gene="HA" FT /product="HA1" FT mat_peptide 1053..1718 FT /gene="HA" FT /product="HA2" XX SQ Sequence 1752 BP; 630 A; 326 C; 383 G; 413 T; 0 other; ggaaaacaaa agcaacaaaa atgaaggcaa tactagtagt tctgctgtat acattcacaa 60 ccgcaaatgc agacacatta tgtataggtt atcatgcgaa caattcaaca gacactgtag 120 acacagtact agaaaagaat gtaacagtaa cacactctgt taatcttctg gaagacaagc 180 ataacggaaa actatgcaaa ctaagagggg tagccccatt gcatttgggt aaatgtaaca 240 ttgctggctg gatcctggga aatccagagt gtgaatcact ctccacagca agatcatggt 300 cctacattgt ggaaacatct aattcagaca atggaacgtg ttacccagga gatttcatcg 360 attatgagga gctaagagag cagttgagct cagtgtcatc atttgaaagg tttgaaatat 420 tccccaagac aagttcatgg cctaatcatg attcgaacaa tggtgtaaca gcagcatgtt 480 ctcatgctgg agcaaaaagc ttctacaaaa acttgatatg gctggttaaa aaaggaaatt 540 catacccaat gctcaaccaa acctacatta atgataaagg gaaagaagtc ctcgtgctgt 600 ggggcattca ccatccacct actactgctg accaacaaag tctctatcag aatgcagatg 660 catatgtttt tgtggggaca tcaagataca gcaagaagtt caagccggaa atagcaaaaa 720 gacccaaagt gagggatcaa gaagggagaa tgaactatta ctggacacta gtagacccgg 780 gagacaaaat aacattcgag gcaactggaa atctagtggt accgagatat gcattcacaa 840 tggaaagaga tgctggatct ggtattatca tttcagatac accaatccac gattgcaata 900 caacttgtca gacacctgag ggtgctataa acaccagcct cccatttcag aatgtaaatc 960 cgatcacaat tgggaaatgt ccaaagtatg taaaaagcac aaaattgaga ctggccacag 1020 gattgaggaa tgtcccgtct attcaatcta gaggcctatt cggggccatt gccggcttca 1080 ttgaaggggg gtggacagga atggtagatg gatggtacgg ttatcaccat caaaatgagc 1140 aggggtcagg atatgcagcc gatctgaaga gcacacaaaa tgccattgat aagattacta 1200 acaaagtaaa ttctgttatt gaaaagatga atacacagtt cacagcagtg ggtaaagagt 1260 tcaaccacct tgaaaaaaga atagagaatc taaataaaaa agttgatgat ggtttcctgg 1320 acatttggac ttacaatgcc gaactgttgg ttctactgga aaacgaaaga actttggact 1380 atcacgattc aaatgtgaag aacttgtatg aaaaagtaag aaaccaatta aaaagcaatg 1440 ccaaggaaat tggaaacggc tgctttgaat tttaccacaa atgcgacaac acatgcatgg 1500 aaagtgtcaa gaatgggact tatgactacc caaaatactc agaggaagca aaattaaaca 1560 gagaaaaaat agatggagta aagctggaat caacaaggat ctaccagatt ttggcgatct 1620 attcaactgc cgccagttca ttggtactgg tagtctccct gggggcaatc agcttctgga 1680 tgtgctctaa tgggtctcta cagtgtagaa tatgtattta acattaggat ttcagaatta 1740 tgagaaaaac ac 1752 // ID MT167157; SV 1; linear; viral cRNA; STD; VRL; 1540 BP. XX AC MT167157; XX PR Project:PRJNA37813; XX DT 17-MAR-2020 (Rel. 144, Created) DT 17-MAR-2020 (Rel. 144, Last updated, Version 1) XX DE Influenza A virus (A/Vermont/30/2019(H1N1)) segment 5 nucleocapsid protein DE (NP) gene, complete cds. XX KW . XX OS Influenza A virus OC Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Insthoviricetes; OC Articulavirales; Orthomyxoviridae; Alphainfluenzavirus. XX RN [1] RP 1-1540 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT "Influenza Sequencing Activity group"; RL Unpublished. XX RN [2] RP 1-1540 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT ; RL Submitted (09-MAR-2020) to the INSDC. RL WHO Collaborating Center for Surveillance, Epidemiology and Control of RL Influenza, Influenza Division, Centers for Disease Control and Prevention, RL 1600 Clifton Road, N.E., Atlanta, GA 30333, USA XX DR MD5; 1566bab1aa0745b8974aa9c1a80b2457. XX CC ##FluData-START## CC EPI_ISOLATE_ID :: EPI_ISL_409565 CC NAME :: A/Vermont/30/2019 CC TYPE :: H1N1 CC Segment_name :: NP CC HOST_AGE :: 36 CC HOST_GENDER :: M CC PASSAGE :: Original CC LOCATION :: United States / Vermont CC COLLECT_DATE :: 10-Dec-2019 CC Lineage :: A(H1N1)pdm09 CC SPECIMEN_ID :: 19-010767-VIR-01 ORIGINAL CC SENDER_LAB :: Vermont Department of Health Laboratory CC SEQLAB_SAMPLE_ID :: 3026054622 CC EPI_SEQUENCE_ID :: EPI1687171 CC ##FluData-END## XX FH Key Location/Qualifiers FH FT source 1..1540 FT /organism="Influenza A virus" FT /segment="5" FT /host="Homo sapiens" FT /strain="A/Vermont/30/2019" FT /serotype="H1N1" FT /mol_type="viral cRNA" FT /country="USA:Vermont" FT /collection_date="10-Dec-2019" FT /db_xref="taxon:11320" FT gene 34..1530 FT /gene="NP" FT CDS 34..1530 FT /codon_start=1 FT /gene="NP" FT /product="nucleocapsid protein" FT /protein_id="QIJ23633.1" FT /translation="MASQGTKRSYEQMETGGERQDTTEIRASVGRMIGGIGRFYIQMCT FT ELKLSDYDGRLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRIDGKW FT TRELILYDKEEIRRVWRQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRM FT CSLMQGSTLPRRSGAAGAAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTRVAYERM FT CNILKGKFQTAAQRAMMDQVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVY FT GLAVASGHDFEREGYSLVGIDPFKLLQNSQVISLMRPNENPAHKSQLVWMACHSAAFED FT LRVSSFIRGKKVIPRGKLSTRGVQIASNENVETMDSNTLELRSRYWAIRTRSGGNTNQQ FT KASAGQISVQPTFSVQRNLPFERATVMAAFSGNNEGRTSDMRTEVIRMMESAKPEDLSF FT QGRGVFELSDEKATNPIVPSFDMSNEGSYFFGDNAEEYDN" XX SQ Sequence 1540 BP; 525 A; 296 C; 394 G; 325 T; 0 other; gtagataatc actcaatgag tgacatcgaa gccatggcgt ctcaaggcac caaacgatca 60 tatgaacaaa tggagactgg tggggagcgc caggatacca cagaaatcag agcatctgtt 120 ggaagaatga ttggtggaat cgggagattc tacatccaaa tgtgcactga actaaaactc 180 agtgattatg atggacgact aatccagaat agcataacaa tagagaggat ggtgctttct 240 gcttttgatg agagaagaaa taaataccta gaagagcatc caagtgctgg gaaggaccct 300 aagaaaacag gaggacccat ctatagaaga atagacggaa aatggacgag agaactcatc 360 ctttatgaca aagaagaaat aaggagagtt tggcgccaag caaacaatgg cgaagatgca 420 acagcaggtc ttactcatat catgatttgg cattccaatc tgaatgatgc cacatatcag 480 aggacaagag cacttgttcg cactggaatg gatcccagaa tgtgctctct aatgcaaggt 540 tcaacacttc ccaggaggtc tggtgccgca ggtgctgcag taaaaggagt tggaacaata 600 gctatggaat taatcagaat gataaaacgt ggaatcaatg acagaaattt ctggaggggt 660 gaaaatggac gaaggacaag agttgcttat gaaagaatgt gcaatatcct taaaggaaaa 720 tttcaaacag ctgcccagag ggcaatgatg gatcaagtaa gagaaagtcg aaacccagga 780 aacgctgaga ttgaagacct cattttcctg gcacggtcag cactcattct gagaggatca 840 gttgcacata aatcctgcct gcctgcttgt gtgtatgggc ttgcagtggc aagtggccat 900 gactttgaaa gagaagggta ctcactggtc gggatagacc cattcaaatt actccaaaac 960 agtcaagtga tcagcctgat gagaccaaat gaaaatccag ctcataagag ccaattggta 1020 tggatggcat gccactctgc tgcatttgaa gacttaagag tatcaagttt cataagagga 1080 aagaaagtga tcccaagagg aaagctttcc acaagagggg ttcagattgc ttcaaatgag 1140 aatgtggaaa ccatggactc caataccctg gaactaagaa gcagatactg ggccataaga 1200 accaggagtg gaggaaatac caatcaacag aaggcatccg caggccagat cagtgtgcag 1260 cctacattct cagtgcagcg aaatctccct tttgaaagag caaccgttat ggcagcattc 1320 agcgggaaca atgaaggacg gacatccgac atgcgaacag aagttataag aatgatggaa 1380 agcgcaaagc cagaggattt gtccttccag gggcggggag tcttcgagct ctcggacgaa 1440 aaggcaacga acccgatcgt gccttctttt gacatgagta atgaagggtc ttatttcttc 1500 ggagacaatg cagaggagta tgacaattga agaaaaatac 1540 // ID MT167158; SV 1; linear; viral cRNA; STD; VRL; 1433 BP. XX AC MT167158; XX PR Project:PRJNA37813; XX DT 17-MAR-2020 (Rel. 144, Created) DT 17-MAR-2020 (Rel. 144, Last updated, Version 1) XX DE Influenza A virus (A/Vermont/30/2019(H1N1)) segment 6 neuraminidase (NA) DE gene, complete cds. XX KW . XX OS Influenza A virus OC Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Insthoviricetes; OC Articulavirales; Orthomyxoviridae; Alphainfluenzavirus. XX RN [1] RP 1-1433 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT "Influenza Sequencing Activity group"; RL Unpublished. XX RN [2] RP 1-1433 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT ; RL Submitted (09-MAR-2020) to the INSDC. RL WHO Collaborating Center for Surveillance, Epidemiology and Control of RL Influenza, Influenza Division, Centers for Disease Control and Prevention, RL 1600 Clifton Road, N.E., Atlanta, GA 30333, USA XX DR MD5; c914a8cf5d650c7ac127e9554a895a12. XX CC ##FluData-START## CC EPI_ISOLATE_ID :: EPI_ISL_409565 CC NAME :: A/Vermont/30/2019 CC TYPE :: H1N1 CC Segment_name :: NA CC HOST_AGE :: 36 CC HOST_GENDER :: M CC PASSAGE :: Original CC LOCATION :: United States / Vermont CC COLLECT_DATE :: 10-Dec-2019 CC Lineage :: A(H1N1)pdm09 CC SPECIMEN_ID :: 19-010767-VIR-01 ORIGINAL CC SENDER_LAB :: Vermont Department of Health Laboratory CC SEQLAB_SAMPLE_ID :: 3026054622 CC EPI_SEQUENCE_ID :: EPI1687180 CC ##FluData-END## XX FH Key Location/Qualifiers FH FT source 1..1433 FT /organism="Influenza A virus" FT /segment="6" FT /host="Homo sapiens" FT /strain="A/Vermont/30/2019" FT /serotype="H1N1" FT /mol_type="viral cRNA" FT /country="USA:Vermont" FT /collection_date="10-Dec-2019" FT /db_xref="taxon:11320" FT gene 9..1418 FT /gene="NA" FT CDS 9..1418 FT /codon_start=1 FT /gene="NA" FT /product="neuraminidase" FT /protein_id="QIJ23634.1" FT /translation="MNPNQKIITIGSICMTIGMANLILQIGNIISIWVSHSIQIGNQSQ FT IETCNQSVITYENNTWVNQTYVNISNTNLAARQSVASVKIAGNSSLCPVSGWAIYSKDN FT SVRIGSKGDVFVIREPFISCSPLECRTFFLTQGALLNDKHSNGTIKDRSPYRTLMSCPI FT GEVPSPYNSRFESVAWSASACHDGTNWLTIGISGPDSGAVAVLKYNGIITDTIKSWRNN FT ILRTQESECACVNGSCFTIMTDGPSDGQASYKIFRIEKGKIIKSVEMKAPNYHYEECSC FT YPDSSEITCVCRDNWHGSNRPWVSFNQNLEYQMGYICSGVFGDNPRPNDKTGSCGPVSS FT NGANGVKGFSFKYGNGVWIGRTKSISSRKGFEMIWDPNGWTGTDNKFSIKQDIVEINEW FT SGYSGSFVQHPELTGLDCIRPCFWVELIRGRPEENTVWTSGSSISFCGVDSDTVGWSWP FT DGAELPFTIDK" XX SQ Sequence 1433 BP; 462 A; 261 C; 336 G; 374 T; 0 other; agtttaaaat gaatccaaac caaaagataa taaccattgg ttcgatctgt atgacaattg 60 gaatggctaa cttaatatta caaattggga acataatctc aatatgggtt agccactcaa 120 ttcaaattgg aaatcaaagc cagattgaaa catgcaatca aagcgtcatt acttatgaaa 180 acaacacttg ggtaaatcag acatatgtta acatcagtaa caccaacttg gctgctagac 240 agtcagtggc ttctgtgaaa atagcaggca attcctctct ctgccctgtt agtggatggg 300 ctatatacag taaagacaac agtgtgagaa tcggttccaa gggggatgtg tttgtcataa 360 gggaaccatt catatcatgc tctcccttgg aatgcagaac cttcttcttg actcaagggg 420 ccttgctaaa tgacaaacat tccaatggaa ccattaaaga caggagccca tatcgaaccc 480 taatgagctg tcctattggt gaagttccct ctccatacaa ctcaagattt gagtcagtcg 540 cttggtcagc aagtgcttgt catgatggca ccaattggct aacaattgga atttctggcc 600 cagacagtgg ggcagtggct gtgttaaagt acaatggcat aataacagac actatcaaga 660 gttggaggaa caatatattg agaacacaag agtctgaatg tgcatgtgta aatggttctt 720 gctttaccat aatgaccgat ggaccaagtg atggacaggc ctcatacaaa atcttcagaa 780 tagaaaaggg aaagataatc aaatcagtcg aaatgaaagc ccctaattat cactatgagg 840 aatgctcctg ttatcccgac tctagtgaaa tcacatgtgt gtgcagggat aactggcatg 900 gctcgaatcg accgtgggtg tctttcaacc agaatctgga atatcagatg ggatacatat 960 gcagtggggt tttcggagac aatccacgcc ctaatgataa gacaggcagt tgtggtccag 1020 tatcgtctaa tggagcaaat ggagtaaagg gattttcatt taaatacggc aatggtgttt 1080 ggataggaag aactaagagc attagttcaa gaaaaggttt tgaaatgatt tgggatccga 1140 atggatggac tgggactgac aataaattct caataaaaca agatatcgta gaaataaatg 1200 agtggtcagg gtatagcggg agttttgttc agcatccaga actaacaggg ctggattgta 1260 taagaccttg cttctgggtt gaactaataa gaggacgacc cgaagagaac acagtctgga 1320 ctagcgggag cagcatatcc ttttgtggtg tagacagtga cactgtgggt tggtcttggc 1380 cagacggtgc tgagttgcca tttaccattg acaagtaatt tgttcaaaaa act 1433 // ID MT167159; SV 1; linear; viral cRNA; STD; VRL; 1002 BP. XX AC MT167159; XX PR Project:PRJNA37813; XX DT 17-MAR-2020 (Rel. 144, Created) DT 17-MAR-2020 (Rel. 144, Last updated, Version 1) XX DE Influenza A virus (A/Vermont/30/2019(H1N1)) segment 7 matrix protein 2 (M2) DE and matrix protein 1 (M1) genes, complete cds. XX KW . XX OS Influenza A virus OC Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Insthoviricetes; OC Articulavirales; Orthomyxoviridae; Alphainfluenzavirus. XX RN [1] RP 1-1002 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT "Influenza Sequencing Activity group"; RL Unpublished. XX RN [2] RP 1-1002 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT ; RL Submitted (09-MAR-2020) to the INSDC. RL WHO Collaborating Center for Surveillance, Epidemiology and Control of RL Influenza, Influenza Division, Centers for Disease Control and Prevention, RL 1600 Clifton Road, N.E., Atlanta, GA 30333, USA XX DR MD5; e64dd2830a084dfc9084a5a0262f9bcd. XX CC ##FluData-START## CC EPI_ISOLATE_ID :: EPI_ISL_409565 CC NAME :: A/Vermont/30/2019 CC TYPE :: H1N1 CC Segment_name :: M CC HOST_AGE :: 36 CC HOST_GENDER :: M CC PASSAGE :: Original CC LOCATION :: United States / Vermont CC COLLECT_DATE :: 10-Dec-2019 CC Lineage :: A(H1N1)pdm09 CC SPECIMEN_ID :: 19-010767-VIR-01 ORIGINAL CC SENDER_LAB :: Vermont Department of Health Laboratory CC SEQLAB_SAMPLE_ID :: 3026054622 CC EPI_SEQUENCE_ID :: EPI1687174 CC ##FluData-END## XX FH Key Location/Qualifiers FH FT source 1..1002 FT /organism="Influenza A virus" FT /segment="7" FT /host="Homo sapiens" FT /strain="A/Vermont/30/2019" FT /serotype="H1N1" FT /mol_type="viral cRNA" FT /country="USA:Vermont" FT /collection_date="10-Dec-2019" FT /db_xref="taxon:11320" FT gene 14..995 FT /gene="M2" FT CDS join(14..39,728..995) FT /codon_start=1 FT /gene="M2" FT /product="matrix protein 2" FT /protein_id="QIJ23636.1" FT /translation="MSLLTEVETPTRSEWECRCSGSSDPLVIAANIIGILHLILWITDR FT LFFKCIYRRFKYGLKRGPSTEGVPESMREEYQQEQQSAVDVDDGHFVNIELE" FT gene 14..772 FT /gene="M1" FT CDS 14..772 FT /codon_start=1 FT /gene="M1" FT /product="matrix protein 1" FT /protein_id="QIJ23635.1" FT /translation="MSLLTEVETYVLSIIPSGPLKAEIAQRLESVFAGKNTDLEALMEW FT LKTRPILSPLTKGILGFVFTLTVPSERGLQRRRFIQNALNGNGDPNNMDRAVKLYKKLK FT REITFHGAKEVSLSYSTGALASCMGLIYNRMGTVTTEAAFGLVCATCEQIADSQHRSHR FT QMATTTNPLIRHENRMVLASTTAKAMEQVAGSSEQAAEAMEVANKTRQMVHAMRTIGTH FT PSSSAGLRDDLLENLQAYQKRMGVQMQRFK" XX SQ Sequence 1002 BP; 299 A; 207 C; 257 G; 239 T; 0 other; tagatgttta aagatgagtc ttctaaccga ggtcgaaacg tacgttcttt ctatcatccc 60 gtcaggcccc ctcaaagccg agatcgcaca gagactggaa agtgtctttg caggaaagaa 120 cacagatctt gaggctctca tggaatggct aaagacaaga ccaatcttgt cacctctgac 180 taagggaatt ttaggatttg tgttcacgct cactgtgccc agtgagcgag gactgcagcg 240 tagacgcttt atccaaaatg ccctaaatgg aaatggggac ccgaacaaca tggatagagc 300 agttaaacta tacaagaagc tcaaaagaga aataacgttc catggggcca aggaggtgtc 360 actaagctat tcaactggtg cacttgcaag ttgcatgggc ctcatataca acaggatggg 420 aacagtgacc acagaagcag ctttcggtct agtttgtgcc acttgtgaac agattgctga 480 ttcacagcat cggtctcaca gacaaatggc tactaccaca aatccactaa tcaggcatga 540 aaacagaatg gtgctggcta gcactacggc aaaggctatg gaacaggtgg ctggatcgag 600 tgaacaggca gcggaggcaa tggaggttgc taataagact aggcagatgg tacatgcaat 660 gagaactatt gggactcatc ctagctccag tgctggtctg agagatgacc ttcttgaaaa 720 tttgcaggcc taccagaagc gaatgggagt gcagatgcag cggttcaagt gatcctctcg 780 tcattgcagc aaacatcatt gggatcttgc acctgatatt gtggattact gatcgtcttt 840 ttttcaaatg catttatcgt cgctttaaat acggtttgaa aagagggcct tctacggaag 900 gagtgcctga gtccatgagg gaagaatatc aacaggagca gcagagtgct gtggatgttg 960 acgatggtca ttttgtcaac atagagctag agtaaaaaac ta 1002 // ID MT167160; SV 1; linear; viral cRNA; STD; VRL; 865 BP. XX AC MT167160; XX PR Project:PRJNA37813; XX DT 17-MAR-2020 (Rel. 144, Created) DT 17-MAR-2020 (Rel. 144, Last updated, Version 1) XX DE Influenza A virus (A/Vermont/30/2019(H1N1)) segment 8 nuclear export DE protein (NEP) and nonstructural protein 1 (NS1) genes, complete cds. XX KW . XX OS Influenza A virus OC Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Insthoviricetes; OC Articulavirales; Orthomyxoviridae; Alphainfluenzavirus. XX RN [1] RP 1-865 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT "Influenza Sequencing Activity group"; RL Unpublished. XX RN [2] RP 1-865 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT ; RL Submitted (09-MAR-2020) to the INSDC. RL WHO Collaborating Center for Surveillance, Epidemiology and Control of RL Influenza, Influenza Division, Centers for Disease Control and Prevention, RL 1600 Clifton Road, N.E., Atlanta, GA 30333, USA XX DR MD5; a2b97e335e7cf5ff91c68715c4da547b. XX CC ##FluData-START## CC EPI_ISOLATE_ID :: EPI_ISL_409565 CC NAME :: A/Vermont/30/2019 CC TYPE :: H1N1 CC Segment_name :: NS CC HOST_AGE :: 36 CC HOST_GENDER :: M CC PASSAGE :: Original CC LOCATION :: United States / Vermont CC COLLECT_DATE :: 10-Dec-2019 CC Lineage :: A(H1N1)pdm09 CC SPECIMEN_ID :: 19-010767-VIR-01 ORIGINAL CC SENDER_LAB :: Vermont Department of Health Laboratory CC SEQLAB_SAMPLE_ID :: 3026054622 CC EPI_SEQUENCE_ID :: EPI1687173 CC ##FluData-END## XX FH Key Location/Qualifiers FH FT source 1..865 FT /organism="Influenza A virus" FT /segment="8" FT /host="Homo sapiens" FT /strain="A/Vermont/30/2019" FT /serotype="H1N1" FT /mol_type="viral cRNA" FT /country="USA:Vermont" FT /collection_date="10-Dec-2019" FT /db_xref="taxon:11320" FT gene 15..852 FT /gene="NEP" FT /gene_synonym="NS2" FT CDS join(15..44,517..852) FT /codon_start=1 FT /gene="NEP" FT /gene_synonym="NS2" FT /product="nuclear export protein" FT /note="nonstructural protein 2" FT /protein_id="QIJ23638.1" FT /translation="MESNTMSSFQDILMRMSKMQLGSSSEDLSGMVTRFESLKIYRDSL FT GEAVMRMGDLHYLQSRNEKWREQLGQKFEEIRWLIEEIRHRLKATENSFEQITFMQALQ FT LLLEVEQEIRAFSFQLI" FT gene 15..674 FT /gene="NS1" FT CDS 15..674 FT /codon_start=1 FT /gene="NS1" FT /product="nonstructural protein 1" FT /protein_id="QIJ23637.1" FT /translation="MESNTMSSFQVDCFLWHIRKRFADNGLGDAPFLDRLRRDQKSLKG FT RGNTLGLDIKTATLVGKQIVEWILKEESSETLRMTIASVPTSRYISDMTLEEMSRDWFM FT LMPRQKIIGPLCVRLDQAVMDKNIVLEANFSVIFNRLETLILLRAFTEEGAIVGEISPL FT PSLPGHTYEDVKNAVGVLIGGLEWNGNTVRVSENIQRFAWRSGDENGRPSLPPEQK" XX SQ Sequence 865 BP; 282 A; 164 C; 204 G; 215 T; 0 other; gtgacaaaaa cataatggaa tccaacacca tgtcaagctt tcaggtagac tgttttcttt 60 ggcatattcg caagcgattt gcagacaatg gattgggtga tgccccattc cttgatcggc 120 tacgccgaga tcaaaagtcc ttaaaaggaa gaggcaacac ccttggtctc gacatcaaaa 180 cagccactct tgttgggaaa caaattgtgg aatggatttt gaaagaggaa tccagcgaaa 240 cacttagaat gacaattgca tctgtaccta cttcgcgtta catttctgac atgaccctcg 300 aggaaatgtc acgagactgg ttcatgctta tgcctaggca aaagataata ggccctcttt 360 gcgtgcgatt ggaccaggcg gtcatggata agaacatagt actggaagca aacttcagtg 420 taatcttcaa ccgattagag accttgatac tactaagagc tttcactgag gagggagcaa 480 tagttggaga aatttcacca ttaccttctc ttccaggaca tacttatgag gatgtcaaaa 540 atgcagttgg ggtcctcatc ggaggacttg agtggaatgg taacacggtt cgagtctctg 600 aaaatataca gagattcgct tggagaagcg gtgatgagaa tgggagacct tcactacctc 660 cagagcagaa atgagaagtg gcgggaacaa ttgggacaga aatttgagga aataaggtgg 720 ttaattgaag aaatacgaca cagattgaaa gcgacagaga atagtttcga acaaataaca 780 tttatgcaag ccttacaact actgcttgaa gtagagcaag agataagagc tttctcgttt 840 cagcttattt aatgataaaa aacac 865 // ID MT167161; SV 1; linear; viral cRNA; STD; VRL; 1752 BP. XX AC MT167161; XX PR Project:PRJNA37813; XX DT 17-MAR-2020 (Rel. 144, Created) DT 17-MAR-2020 (Rel. 144, Last updated, Version 1) XX DE Influenza A virus (A/Arizona/01/2020(H1N1)) segment 4 hemagglutinin (HA) DE gene, complete cds. XX KW . XX OS Influenza A virus OC Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Insthoviricetes; OC Articulavirales; Orthomyxoviridae; Alphainfluenzavirus. XX RN [1] RP 1-1752 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT "Influenza Sequencing Activity group"; RL Unpublished. XX RN [2] RP 1-1752 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT ; RL Submitted (09-MAR-2020) to the INSDC. RL WHO Collaborating Center for Surveillance, Epidemiology and Control of RL Influenza, Influenza Division, Centers for Disease Control and Prevention, RL 1600 Clifton Road, N.E., Atlanta, GA 30333, USA XX DR MD5; 5d61aed0515a0d42c76783175bd60baf. XX CC ##FluData-START## CC EPI_ISOLATE_ID :: EPI_ISL_409495 CC NAME :: A/Arizona/01/2020 CC TYPE :: H1N1 CC Segment_name :: HA CC HOST_AGE :: 63 CC HOST_GENDER :: M CC PASSAGE :: C1 (2020-01-22) CC LOCATION :: United States / Arizona CC COLLECT_DATE :: 06-Jan-2020 CC Lineage :: A(H1N1)pdm09 CC RESIST_TO_OSELTAMIVIR :: Sensitive CC RESIST_TO_ZANAMVIR :: Sensitive CC SPECIMEN_ID :: AZ00094082 ORIGINAL CC SENDER_LAB :: Arizona Departmentment of Health Services CC SEQLAB_SAMPLE_ID :: 3026054668 CC EPI_SEQUENCE_ID :: EPI1688620 CC ##FluData-END## XX FH Key Location/Qualifiers FH FT source 1..1752 FT /organism="Influenza A virus" FT /segment="4" FT /host="Homo sapiens" FT /strain="A/Arizona/01/2020" FT /serotype="H1N1" FT /mol_type="viral cRNA" FT /country="USA:Arizona" FT /collection_date="06-Jan-2020" FT /db_xref="taxon:11320" FT gene 21..1721 FT /gene="HA" FT CDS 21..1721 FT /codon_start=1 FT /gene="HA" FT /product="hemagglutinin" FT /function="receptor binding and fusion protein" FT /protein_id="QIJ23639.1" FT /translation="MKAILVVLLYTFTTANADTLCIGYHANNSTDTVDTVLEKNVTVTH FT SVNLLEDKHNGKLCKLRGVAPLHLGKCNIAGWILGNPECESLSTARSWSYIVETSNSDN FT GTCYPGDFINYEELREQLSSVSSFERFEIFPKTSSWPNHDSDKGVTAACPHAGAKSFYK FT NLIWLVKKGNSYPKLNQTYINDKGKEVLVLWGIHHPPTIAAQESLYQNADAYVFVGTSR FT YSKKFKPEIATRPKVRDQEGRMNYYWTLVEPGDKITFEATGNLVVPRYAFTMERDAGSG FT IIISDTPVHDCNTTCQTPEGAINTSLPFQNVHPITIGKCPKYVKSTKLRLATGLRNVPS FT IQSRGLFGAIAGFIEGGWTGMVDGWYGYHHQNEQGSGYAADLKSTQNAIDKITNKVNSV FT IEKMNTQFTAVGKEFNHLEKRIENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSN FT VKNLYEKVRNQLKNNAKEIGNGCFEFYHKCDNTCMESVKNGTYDYPKYSEEAKLNREKI FT DGVKLESTRIYQILAIYSTVASSLVLVVSLGAISFWMCSNGSLQCRICI" FT sig_peptide 21..71 FT /gene="HA" FT mat_peptide 72..1052 FT /gene="HA" FT /product="HA1" FT mat_peptide 1053..1718 FT /gene="HA" FT /product="HA2" XX SQ Sequence 1752 BP; 629 A; 327 C; 385 G; 411 T; 0 other; ggaaaacaaa agcaacaaaa atgaaggcaa tactagtagt tctgctgtat acatttacaa 60 ccgcaaatgc agacacatta tgtataggtt atcatgcgaa caattcaaca gacactgtag 120 acacagtact agaaaagaat gtaacagtaa cacactctgt caatcttctg gaagacaagc 180 ataacggaaa actatgcaaa ctaagagggg tagccccatt gcatttgggt aaatgtaaca 240 ttgctggctg gatcctggga aatccagagt gtgaatcact ctccacagca aggtcatggt 300 cctacattgt ggaaacatct aattcagaca atggaacgtg ttacccagga gatttcatca 360 attatgagga gctaagagag caattgagct cagtgtcatc atttgaaagg tttgaaatat 420 tccccaagac aagttcatgg cctaatcatg actcggacaa aggtgtaacg gcagcatgtc 480 ctcacgctgg agcaaaaagc ttctacaaaa acttgatatg gctggttaaa aaaggaaatt 540 catacccaaa gctcaaccaa acctacatta atgataaagg gaaagaagtc ctcgtgctgt 600 ggggcattca ccatccacct actattgctg cccaagaaag tctctatcag aatgcagatg 660 catatgtttt tgtggggaca tcaagataca gcaagaagtt caagccggaa atagcaacaa 720 gacccaaagt gagggatcaa gaagggagaa tgaactatta ctggacacta gtagaaccgg 780 gagacaaaat aacattcgaa gcaactggaa atctagtggt accgagatat gcattcacaa 840 tggaaagaga tgctggatct ggtattatca tttcagatac accagtccac gattgcaata 900 caacttgtca gacacccgag ggtgctataa acaccagcct cccatttcag aatgtacatc 960 cgattacaat tgggaaatgt ccaaagtatg taaaaagcac aaaattgaga ctggccacag 1020 gattgaggaa tgtcccgtct attcaatcta gaggcctatt cggggccatt gctggcttca 1080 ttgaaggggg gtggacaggg atggtagatg gatggtacgg ttatcaccat caaaatgagc 1140 agggatcagg atatgcagcc gatctgaaga gcacacaaaa tgccattgat aagattacta 1200 acaaagtaaa ttctgttatt gaaaagatga atacacagtt cacagcagtg ggtaaagagt 1260 tcaaccacct tgaaaaaaga atagagaatc taaataaaaa agttgatgat ggtttcctgg 1320 acatttggac ttacaatgcc gaactgttgg ttctactgga aaacgaaaga actttggact 1380 atcacgattc aaatgtgaag aacttgtatg aaaaagtaag aaaccagtta aaaaacaatg 1440 ccaaggaaat tggaaacggc tgctttgaat tttaccacaa atgcgacaac acatgcatgg 1500 aaagtgtcaa gaatgggact tatgactacc caaaatactc agaggaagca aaattaaaca 1560 gagaaaaaat agatggagta aagctggaat caacaaggat ctaccagatt ttggcgatct 1620 attcaactgt tgccagttca ttggtactgg tagtctccct gggggcaatc agcttctgga 1680 tgtgctctaa tgggtctcta cagtgtagaa tatgtattta acattaggat ttcagaatca 1740 tgagaaaaac ac 1752 // ID MT167162; SV 1; linear; viral cRNA; STD; VRL; 1540 BP. XX AC MT167162; XX PR Project:PRJNA37813; XX DT 17-MAR-2020 (Rel. 144, Created) DT 17-MAR-2020 (Rel. 144, Last updated, Version 1) XX DE Influenza A virus (A/Arizona/01/2020(H1N1)) segment 5 nucleocapsid protein DE (NP) gene, complete cds. XX KW . XX OS Influenza A virus OC Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Insthoviricetes; OC Articulavirales; Orthomyxoviridae; Alphainfluenzavirus. XX RN [1] RP 1-1540 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT "Influenza Sequencing Activity group"; RL Unpublished. XX RN [2] RP 1-1540 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT ; RL Submitted (09-MAR-2020) to the INSDC. RL WHO Collaborating Center for Surveillance, Epidemiology and Control of RL Influenza, Influenza Division, Centers for Disease Control and Prevention, RL 1600 Clifton Road, N.E., Atlanta, GA 30333, USA XX DR MD5; 564a06a2ec28dac99d98171effedb07d. XX CC ##FluData-START## CC EPI_ISOLATE_ID :: EPI_ISL_409495 CC NAME :: A/Arizona/01/2020 CC TYPE :: H1N1 CC Segment_name :: NP CC HOST_AGE :: 63 CC HOST_GENDER :: M CC PASSAGE :: C1 (2020-01-22) CC LOCATION :: United States / Arizona CC COLLECT_DATE :: 06-Jan-2020 CC Lineage :: A(H1N1)pdm09 CC RESIST_TO_OSELTAMIVIR :: Sensitive CC RESIST_TO_ZANAMVIR :: Sensitive CC SPECIMEN_ID :: AZ00094082 ORIGINAL CC SENDER_LAB :: Arizona Departmentment of Health Services CC SEQLAB_SAMPLE_ID :: 3026054668 CC EPI_SEQUENCE_ID :: EPI1688618 CC ##FluData-END## XX FH Key Location/Qualifiers FH FT source 1..1540 FT /organism="Influenza A virus" FT /segment="5" FT /host="Homo sapiens" FT /strain="A/Arizona/01/2020" FT /serotype="H1N1" FT /mol_type="viral cRNA" FT /country="USA:Arizona" FT /collection_date="06-Jan-2020" FT /db_xref="taxon:11320" FT gene 34..1530 FT /gene="NP" FT CDS 34..1530 FT /codon_start=1 FT /gene="NP" FT /product="nucleocapsid protein" FT /protein_id="QIJ23640.1" FT /translation="MASQGTKRSYEQMETGGERQDTTEIRASVGRMIGGIGRFYIQMCT FT ELKLSDYDGRLIQNSITIERMVLSSFDERRNKYLEEHPSAGKDPKKTGGPIYRRIDGKW FT TRELILYDKEEIRRVWRQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRM FT CSLMQGSTLPRRSGAAGAAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTRVAYERM FT CNILKGKFQTAAQRAMMDQVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVY FT GLAVASGHDFEREGYSLVGIDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFED FT LRVSSFIRGKKVIPRGKLSTRGVQIASNENVETMDSNTLELRSRYWAIRTRSGGNTNQQ FT KASAGQISVQPTFSVQRNLPFERATIMAAFSGNNEGRTSDMRTEIIRMMESAKPEDLSF FT QGRGVFELSDEKATNPIVPSFDMSNEGSYFFGDNAEEYDN" XX SQ Sequence 1540 BP; 528 A; 296 C; 389 G; 326 T; 1 other; gtagataatc actcaatgag tgacatcgaa gccatggcgt ctcaaggcac caaacgatca 60 tatgaacaaa tggagactgg tggggagcgc caggatacca cagaaatcag agcatctgtt 120 ggaagaatga ttggtggaat cgggagattc tacatccaaa tgtgcactga actaaaactc 180 agtgattatg atggacgact aatccagaac agcataacaa tagagaggat ggtgctttct 240 tcttttgatg agagaagaaa taaataccta gaagagcatc caagtgctgg gaaggaccct 300 aagaaaacag gaggacccat ctatagaaga atagacggaa aatggacaag agaactcatc 360 ctttatgaca aagaagaaat aagaagagtt tggcgccaag caaacaatgg cgaagatgca 420 acagcaggtc ttactcatat catgatttgg cattccaatc tgaatgatgc cacatatcag 480 aggacaagag cacttgttcg cactggaatg gatcccagaa tgtgctctct aatgcaaggt 540 tcaacacttc ccagaaggtc tggtgccgca ggtgctgcag taaaaggagt tggaacaata 600 gctatggagt taatcagaat gataaaacgt ggaatcaatg accgaaattt ctggaggggt 660 gaaaatggam gaaggacaag agttgcttat gaaagaatgt gcaatatcct caaaggaaaa 720 tttcaaacag ctgcccagag ggcaatgatg gatcaagtaa gagaaagtcg aaacccagga 780 aacgctgaga ttgaagacct cattttcctg gcacggtcag cactcattct gagaggatca 840 gttgcacata aatcctgcct gcctgcttgt gtgtatgggc ttgcagtagc aagtggccat 900 gactttgaaa gggaagggta ctcactggtc gggatagacc cattcaaatt actccaaaac 960 agtcaagtgg tcagcctgat gagaccaaat gaaaatccag ctcacaagag tcaattggta 1020 tggatggcat gccactctgc tgcatttgaa gatttaagag tatcaagttt cataagagga 1080 aagaaagtga tcccaagagg aaagctttcc acaagagggg ttcagattgc ttcaaatgag 1140 aatgtggaaa ccatggactc caataccctg gaactaagaa gcagatactg ggccataaga 1200 accagaagtg gaggaaatac caatcaacag aaggcatctg caggccagat cagtgtgcag 1260 cctacattct cagtgcagcg aaatctccct tttgaaagag caaccattat ggcagcattc 1320 agcgggaaca atgaaggacg gacatccgac atgcgaacag aaattataag aatgatggaa 1380 agtgcaaagc cagaggattt gtccttccag gggcggggag tcttcgagct ctcggacgaa 1440 aaggcaacga acccgatcgt gccttccttt gacatgagta atgaagggtc ttatttcttc 1500 ggagacaatg cagaggagta tgacaattga agaaaaatac 1540 // ID MT167163; SV 1; linear; viral cRNA; STD; VRL; 1433 BP. XX AC MT167163; XX PR Project:PRJNA37813; XX DT 17-MAR-2020 (Rel. 144, Created) DT 17-MAR-2020 (Rel. 144, Last updated, Version 1) XX DE Influenza A virus (A/Arizona/01/2020(H1N1)) segment 6 neuraminidase (NA) DE gene, complete cds. XX KW . XX OS Influenza A virus OC Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Insthoviricetes; OC Articulavirales; Orthomyxoviridae; Alphainfluenzavirus. XX RN [1] RP 1-1433 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT "Influenza Sequencing Activity group"; RL Unpublished. XX RN [2] RP 1-1433 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT ; RL Submitted (09-MAR-2020) to the INSDC. RL WHO Collaborating Center for Surveillance, Epidemiology and Control of RL Influenza, Influenza Division, Centers for Disease Control and Prevention, RL 1600 Clifton Road, N.E., Atlanta, GA 30333, USA XX DR MD5; 378b85b9063e27921a658e798d0efd1b. XX CC ##FluData-START## CC EPI_ISOLATE_ID :: EPI_ISL_409495 CC NAME :: A/Arizona/01/2020 CC TYPE :: H1N1 CC Segment_name :: NA CC HOST_AGE :: 63 CC HOST_GENDER :: M CC PASSAGE :: C1 (2020-01-22) CC LOCATION :: United States / Arizona CC COLLECT_DATE :: 06-Jan-2020 CC Lineage :: A(H1N1)pdm09 CC RESIST_TO_OSELTAMIVIR :: Sensitive CC RESIST_TO_ZANAMVIR :: Sensitive CC SPECIMEN_ID :: AZ00094082 ORIGINAL CC SENDER_LAB :: Arizona Departmentment of Health Services CC SEQLAB_SAMPLE_ID :: 3026054668 CC EPI_SEQUENCE_ID :: EPI1688619 CC ##FluData-END## XX FH Key Location/Qualifiers FH FT source 1..1433 FT /organism="Influenza A virus" FT /segment="6" FT /host="Homo sapiens" FT /strain="A/Arizona/01/2020" FT /serotype="H1N1" FT /mol_type="viral cRNA" FT /country="USA:Arizona" FT /collection_date="06-Jan-2020" FT /db_xref="taxon:11320" FT gene 9..1418 FT /gene="NA" FT CDS 9..1418 FT /codon_start=1 FT /gene="NA" FT /product="neuraminidase" FT /protein_id="QIJ23641.1" FT /translation="MNPNQKIITIGSICMTIGMANLILQIGNIISIWVSHSIQTGNQSQ FT IETCNKNVITYENNTWVNQTYVNISNTNSAARQSVASVKLAGNSSLCPVSGWAIYSKDN FT SVRIGSKGDVFVIREPFISCSPLECRTFFLTQGALLNDKHSNGTIKDRSPYRTLMSCPI FT GEVPSPYNSRFESVAWSASACHDGTNWLTIGISGPDSGAVAVLKYNGIITDTIKSWRNX FT ILRTQESECACVNGSCFTIMTDGPSDGQASYKIFRIEKGKIIKSVEMKAPNYHYEECSC FT YPDSSEITCVCRDNWHGSNRPWVSFNQNLEYQMGYICSGVFGDNPRPNDKTGSCGPVSS FT NGANGVKGFSFKYGNGVWIGRTKSISSRKGFEMIWDPNGWTGTDNKFSKKQDIVGINEW FT SGYSGSFVQHPELTGLNCIRPCFWVELIRGRPEENTIWTSGSSISFCGVDSDIVGWSWP FT DGAELPFTIDK" XX SQ Sequence 1433 BP; 465 A; 264 C; 330 G; 369 T; 5 other; agtttaaaat gaatccaaac caaaagataa taaccattgg ctctatctgt atgacaattg 60 gaatggctaa cttaatatta caaattggaa acataatctc aatatgggtt agccactcaa 120 ttcaaaccgg aaaccaaagc cagatcgaaa catgcaataa aaacgtcatt acttatgaaa 180 acaatacttg ggtaaatcag acatatgtta acatcagcaa caccaactct gctgctagac 240 agtcagtggc ttccgtgaaa ttagcgggca attcctctct ctgccctgty agtggatggg 300 ctatatacag taaagacaac agtgtaagaa tcggttccaa gggggatgtg tttgtcataa 360 gggaaccatt catatcatgc tctcccttgg aatgcagaac cttcttcttg actcaagggg 420 ctttgctaaa tgacaaacat tccaatggaa ccattaaaga cagaagccca tatcgaaccc 480 taatgagctg tcctattggt gaagttccct ctccatacaa ctcaagattt gagtcagtcg 540 cttggtcagc aagtgcttgt catgatggca ccaattggct aacaattgga atttctggcc 600 cagacagtgg ggcagtggct gtgttaaaat acaatggcat aataacagac actatcaara 660 gttggaggaa caakatattg agaacacaag agtctgaatg tgcatgtgta aatggttctt 720 gctttaccat aatgaccgat ggaccaagtg atggacaggc ctcatacaaa atcttcagaa 780 tagaaaaggg aaagataatc aaatcagtcg aaatgaaagc ccctaattat cactatgarg 840 aatgctcctg ttaccctgat tctagtgaaa tcacatgtgt gtgcagggat aactggcatg 900 gctcgaatcg accgtgggtg tctttcaacc agaatctgga ataycagatg ggatacatat 960 gcagtggggt tttcggagac aatccacgcc ctaatgataa gacaggcagt tgtggtccag 1020 tatcgtctaa tggagcaaat ggggtaaaag gattttcatt caaatacggc aatggtgttt 1080 ggatagggag aactaagagc attagttcaa gaaaaggttt tgagatgatt tgggatccga 1140 atggatggac tgggactgac aataaattct caaaaaagca agatatcgta ggaataaatg 1200 agtggtcagg gtatagcggg agttttgttc agcatccaga actaacaggg ctgaattgta 1260 taagaccttg cttctgggtt gaactaataa gaggacgacc cgaagagaac acaatctgga 1320 ctagtgggag cagcatatcc ttttgtggtg tagacagtga cattgtgggt tggtcttggc 1380 cagacggtgc tgagttgcca tttaccattg acaagtaatt tgttcaaaaa act 1433 // ID MT167164; SV 1; linear; viral cRNA; STD; VRL; 1002 BP. XX AC MT167164; XX PR Project:PRJNA37813; XX DT 17-MAR-2020 (Rel. 144, Created) DT 17-MAR-2020 (Rel. 144, Last updated, Version 1) XX DE Influenza A virus (A/Arizona/01/2020(H1N1)) segment 7 matrix protein 2 (M2) DE and matrix protein 1 (M1) genes, complete cds. XX KW . XX OS Influenza A virus OC Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Insthoviricetes; OC Articulavirales; Orthomyxoviridae; Alphainfluenzavirus. XX RN [1] RP 1-1002 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT "Influenza Sequencing Activity group"; RL Unpublished. XX RN [2] RP 1-1002 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT ; RL Submitted (09-MAR-2020) to the INSDC. RL WHO Collaborating Center for Surveillance, Epidemiology and Control of RL Influenza, Influenza Division, Centers for Disease Control and Prevention, RL 1600 Clifton Road, N.E., Atlanta, GA 30333, USA XX DR MD5; 2ff3024cdc5972727222f7e3bc171be5. XX CC ##FluData-START## CC EPI_ISOLATE_ID :: EPI_ISL_409495 CC NAME :: A/Arizona/01/2020 CC TYPE :: H1N1 CC Segment_name :: M CC HOST_AGE :: 63 CC HOST_GENDER :: M CC PASSAGE :: C1 (2020-01-22) CC LOCATION :: United States / Arizona CC COLLECT_DATE :: 06-Jan-2020 CC Lineage :: A(H1N1)pdm09 CC RESIST_TO_OSELTAMIVIR :: Sensitive CC RESIST_TO_ZANAMVIR :: Sensitive CC SPECIMEN_ID :: AZ00094082 ORIGINAL CC SENDER_LAB :: Arizona Departmentment of Health Services CC SEQLAB_SAMPLE_ID :: 3026054668 CC EPI_SEQUENCE_ID :: EPI1686686 CC ##FluData-END## XX FH Key Location/Qualifiers FH FT source 1..1002 FT /organism="Influenza A virus" FT /segment="7" FT /host="Homo sapiens" FT /strain="A/Arizona/01/2020" FT /serotype="H1N1" FT /mol_type="viral cRNA" FT /country="USA:Arizona" FT /collection_date="06-Jan-2020" FT /db_xref="taxon:11320" FT gene 14..995 FT /gene="M2" FT CDS join(14..39,728..995) FT /codon_start=1 FT /gene="M2" FT /product="matrix protein 2" FT /protein_id="QIJ23643.1" FT /translation="MSLLTEVETPTRSEWECRCSGSNDPLVIAANIIGILHLILWITDR FT LFFKCIYRRFKYGLKRGPSTEGVPXSMREEYQQEQQSAVDVDDGHFVNIELE" FT gene 14..772 FT /gene="M1" FT CDS 14..772 FT /codon_start=1 FT /gene="M1" FT /product="matrix protein 1" FT /protein_id="QIJ23642.1" FT /translation="MSLLTEVETYVLSIIPSGPLKAEIAQRLESVFAGKNTDLEALMEW FT LKTRPILSPLTKGILGFVFTLTVPSERGLQRRRFIQNALNGNGDPNNMDRAVKLYKKLK FT REITFHGAKEVSLSYSTGALASCMGLIYNRMGTVTTEAAFGLVCATCEQIADSQHRSHR FT QMATTTNPLIRHENRMVLASTTAKAMEQXAGSSEQAAEAMEVANKTRQMVHAMRTIGTH FT PSSSAGLRDDLLENLQAYQKRMGVQMQRFK" XX SQ Sequence 1002 BP; 301 A; 209 C; 251 G; 239 T; 2 other; tagatgttta aagatgagtc ttctaaccga ggtcgaaacg tacgttcttt ctatcatccc 60 gtcaggcccc ctcaaagccg agatcgcaca gagactggaa agtgtctttg caggaaagaa 120 cacagatctt gaggctctca tggaatggct aaagacaaga ccaatcttgt cacctctgac 180 taagggaatt ttaggatttg tgttcacgct caccgtgccc agtgagcgag gactgcagcg 240 tagacgcttt atccaaaatg ccctaaatgg aaatggggac ccgaacaaca tggatagagc 300 agttaaacta tacaagaaac tcaaaagaga aataacgttc catggggcca aggaggtgtc 360 actaagctat tcaactggtg cacttgcaag ttgcatgggc ctcatataca acaggatggg 420 aacagtgacc acagaagctg ctttcggtct agtttgtgcc acttgtgaac agattgctga 480 ttcacagcat cggtctcaca gacaaatggc tactaccaca aatccactaa tcaggcatga 540 aaacagaatg gtgctggcta gcactacggc aaaggctatg gaacagrtgg ctggatcgag 600 tgaacaggca gcggaggcca tggaggttgc taataagact aggcagatgg tacatgcaat 660 gagaactatt ggaactcatc ctagctccag tgctggtcta agagatgacc ttcttgaaaa 720 tttgcaggcc taccagaagc gaatgggagt gcagatgcag cggttcaaat gatcctctcg 780 tcattgcagc aaacatcatt gggatcttgc acctgatatt gtggattact gatcgtcttt 840 ttttcaaatg catttatcgt cgctttaaat acggtttgaa aagagggcct tctacggaag 900 gagtgcctga ktccatgagg gaagaatatc aacaggagca gcagagtgct gtggatgttg 960 acgatggtca ttttgtcaac atagagctag agtaaaaaac ta 1002 // ID MT167165; SV 1; linear; viral cRNA; STD; VRL; 865 BP. XX AC MT167165; XX PR Project:PRJNA37813; XX DT 17-MAR-2020 (Rel. 144, Created) DT 17-MAR-2020 (Rel. 144, Last updated, Version 1) XX DE Influenza A virus (A/Arizona/01/2020(H1N1)) segment 8 nuclear export DE protein (NEP) and nonstructural protein 1 (NS1) genes, complete cds. XX KW . XX OS Influenza A virus OC Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Insthoviricetes; OC Articulavirales; Orthomyxoviridae; Alphainfluenzavirus. XX RN [1] RP 1-865 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT "Influenza Sequencing Activity group"; RL Unpublished. XX RN [2] RP 1-865 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT ; RL Submitted (09-MAR-2020) to the INSDC. RL WHO Collaborating Center for Surveillance, Epidemiology and Control of RL Influenza, Influenza Division, Centers for Disease Control and Prevention, RL 1600 Clifton Road, N.E., Atlanta, GA 30333, USA XX DR MD5; 40ee299d494f21216fc82aab7fb736c8. XX CC ##FluData-START## CC EPI_ISOLATE_ID :: EPI_ISL_409495 CC NAME :: A/Arizona/01/2020 CC TYPE :: H1N1 CC Segment_name :: NS CC HOST_AGE :: 63 CC HOST_GENDER :: M CC PASSAGE :: C1 (2020-01-22) CC LOCATION :: United States / Arizona CC COLLECT_DATE :: 06-Jan-2020 CC Lineage :: A(H1N1)pdm09 CC RESIST_TO_OSELTAMIVIR :: Sensitive CC RESIST_TO_ZANAMVIR :: Sensitive CC SPECIMEN_ID :: AZ00094082 ORIGINAL CC SENDER_LAB :: Arizona Departmentment of Health Services CC SEQLAB_SAMPLE_ID :: 3026054668 CC EPI_SEQUENCE_ID :: EPI1686685 CC ##FluData-END## XX FH Key Location/Qualifiers FH FT source 1..865 FT /organism="Influenza A virus" FT /segment="8" FT /host="Homo sapiens" FT /strain="A/Arizona/01/2020" FT /serotype="H1N1" FT /mol_type="viral cRNA" FT /country="USA:Arizona" FT /collection_date="06-Jan-2020" FT /db_xref="taxon:11320" FT gene 15..852 FT /gene="NEP" FT /gene_synonym="NS2" FT CDS join(15..44,517..852) FT /codon_start=1 FT /gene="NEP" FT /gene_synonym="NS2" FT /product="nuclear export protein" FT /note="nonstructural protein 2" FT /protein_id="QIJ23645.1" FT /translation="MESNTMSSFQDILMRMSKMQLGSSSEDLSGMVTRFESLKIYRDSL FT GEAVMRMGDLHYLQSRNEKWREQLGQKFEEIRWLIEEIRHRLKATENSFEQITFMQALQ FT LLLEVEQEIRAFSFQLI" FT gene 15..674 FT /gene="NS1" FT CDS 15..674 FT /codon_start=1 FT /gene="NS1" FT /product="nonstructural protein 1" FT /protein_id="QIJ23644.1" FT /translation="MESNTMSSFQVDCFLWHIRKRFADNGLGDAPFLDRLRRDQKSLKG FT RGNTLGLDIKTATLVGKQIVEWILKEESSETLRMAIASVPTSRYISDMTLEEMSRDWFM FT LMPRQKIIGPLCVRLDQAVMDKNIVLEANFSVIFNRLETLVLLRAFTEEGTIVGEISPL FT PSLPGHTYEDVKNAVGVLIGGLEWNGNTVRVSENIQRFAWRSCDENGRPSLPPEQK" XX SQ Sequence 865 BP; 279 A; 165 C; 206 G; 214 T; 1 other; gtgacaaaaa cataatggaa tccaacacca tgtcaagctt tcaggtagac tgttttcttt 60 ggcatattcg caagcgattt gcagacaatg gattgggtga tgccccattc ctygatcggc 120 tacgccgaga tcaaaagtcc ttaaaaggaa gaggcaacac ccttggcctc gacatcaaaa 180 cagccactct tgttgggaaa caaattgtgg aatggatttt gaaagaggaa tccagcgaga 240 cacttagaat ggcaattgca tctgtaccta cttcgcgtta catttctgac atgaccctcg 300 aggaaatgtc acgagactgg ttcatgctta tgcctaggca aaagataata ggccctcttt 360 gcgtgcgatt ggaccaggcg gtcatggata agaacatagt actggaagca aacttcagtg 420 taatcttcaa ccgattagag accttggtac tactaagggc tttcactgag gagggaacaa 480 tagttggaga aatttcacca ttaccttctc ttccaggaca tacttatgag gatgtcaaaa 540 atgcagttgg ggtcctcatc ggaggacttg agtggaatgg taacacggtt cgagtctctg 600 aaaatataca gagattcgct tggagaagct gtgatgagaa tgggagacct tcactacctc 660 cagagcagaa atgagaagtg gcgggaacaa ttgggacaga aatttgagga aataaggtgg 720 ttaattgaag aaatacgaca cagattgaaa gcgacagaga atagtttcga acaaataaca 780 tttatgcaag ccttacaact actgcttgaa gtagagcaag agataagagc tttctcgttt 840 cagcttattt aatgataaaa aacac 865 // ID MT167166; SV 1; linear; viral cRNA; STD; VRL; 2316 BP. XX AC MT167166; XX PR Project:PRJNA37813; XX DT 17-MAR-2020 (Rel. 144, Created) DT 17-MAR-2020 (Rel. 144, Last updated, Version 1) XX DE Influenza A virus (A/Alabama/27/2019(H1N1)) segment 1 polymerase PB2 (PB2) DE gene, complete cds. XX KW . XX OS Influenza A virus OC Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Insthoviricetes; OC Articulavirales; Orthomyxoviridae; Alphainfluenzavirus. XX RN [1] RP 1-2316 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT "Influenza Sequencing Activity group"; RL Unpublished. XX RN [2] RP 1-2316 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT ; RL Submitted (09-MAR-2020) to the INSDC. RL WHO Collaborating Center for Surveillance, Epidemiology and Control of RL Influenza, Influenza Division, Centers for Disease Control and Prevention, RL 1600 Clifton Road, N.E., Atlanta, GA 30333, USA XX DR MD5; b01526e86ad8bff56e62de70ae841a37. XX CC ##FluData-START## CC EPI_ISOLATE_ID :: EPI_ISL_409204 CC NAME :: A/Alabama/27/2019 CC TYPE :: H1N1 CC Segment_name :: PB2 CC HOST_GENDER :: M CC PASSAGE :: C1 (2020-01-15) CC LOCATION :: United States / Alabama CC COLLECT_DATE :: 23-Dec-2019 CC Lineage :: A(H1N1)pdm09 CC RESIST_TO_OSELTAMIVIR :: Sensitive CC RESIST_TO_ZANAMVIR :: Sensitive CC SPECIMEN_ID :: M1912015589 ORIGINAL CC CHARACTERIZATION :: A/BRISBANE/02/2018-LIKE (H1N1)pdm09 CC SENDER_LAB :: ADPH Bureau of Clinical Laboratories CC SEQLAB_SAMPLE_ID :: 3026054470 CC EPI_SEQUENCE_ID :: EPI1684482 CC ##FluData-END## XX FH Key Location/Qualifiers FH FT source 1..2316 FT /organism="Influenza A virus" FT /segment="1" FT /host="Homo sapiens" FT /strain="A/Alabama/27/2019" FT /serotype="H1N1" FT /mol_type="viral cRNA" FT /country="USA:Alabama" FT /collection_date="23-Dec-2019" FT /db_xref="taxon:11320" FT gene 16..2295 FT /gene="PB2" FT CDS 16..2295 FT /codon_start=1 FT /gene="PB2" FT /product="polymerase PB2" FT /protein_id="QIJ23646.1" FT /translation="MERIKELRDLMSQSRTREILTKTTVDHMAIIKKYTSGRQEKNPAL FT RMKWMMAMKYPITADKRIMDIIPERNEQGQTLWSKTNDAGSDRVMVSPLAVTWWNRNGP FT TTSTVHYPKVYKTYFEKVERLKHGTFGPVHFRNQVKIRRRVDTNPGHADLSAKEAQDVI FT MEVVFPNEVGARILTSESQLAITKEKKEELQNCKIAPLMVAYMLERELVRKTRFLPVAG FT GTGSVYIEVLHLTQGTCWEQMYTPGGEVRNDDVDQSLIIAARNIVRRAAVSADPLASLL FT EMCHSTQIGGVKMVDILKQNPTEEQAVDICKAAIGLRISSSFSFGGFTFKRTSGSSVKK FT EEEMLTGNLQTLKLRVHEGYEEFTMVGRRATAILRKATRRLIQLIVSGRDEQSIAXAII FT VAMVFSQEDCMIKAVRGDLNFVNRANQRLNPMHQLLRHFQKDAKVLFQNWGIETIDNVM FT GMIGILPDMTPSTEMSLRGIRVSKMGVDEYSSTERVVVSIDRFLRVRDQRGNVLLSPEE FT VSETQGTEKLTITYSSSMMWEINGPESVLVNTYQWIIRNWEIVKIQWSQDPTMLYNKME FT FEPFQSLVPKATRSRYSGFVRTLFQQMRDVLGTFDTVQIIKLLPFAAAPPEQSRMQFSS FT LTVNVRGSGLRILVRGNSPVFNYNKATKRLTVLGKDAGALTEDPDEGTSGVESAVLRGF FT LILGKEDKRYGPALSINELSNLAKGEKANVLIGQGDIVLVMKRKRDSSILTDSQTATKR FT IRMAIN" XX SQ Sequence 2316 BP; 794 A; 440 C; 582 G; 499 T; 1 other; tcaaatatat tcaatatgga gagaataaaa gagctgagag atctaatgtc acagtcccgc 60 actcgcgaga tactcactaa gaccactgtg gaccatatgg ccatcatcaa aaagtacaca 120 tcgggaaggc aagagaagaa ccccgcactc agaatgaagt ggatgatggc aatgaaatac 180 ccaattacgg cagacaagag aataatggac ataatcccag agaggaatga acaaggacaa 240 accctctgga gcaaaacaaa cgatgctgga tcagaccgag tgatggtatc acctctggcc 300 gtaacatggt ggaatagaaa tggcccaaca acaagtacag ttcattaccc taaggtatat 360 aaaacttatt tcgaaaaggt cgaaaggttg aaacatggca ccttcggccc tgtccacttc 420 agaaatcaag tcaaaataag gaggagagtt gatacaaacc ctggccatgc agatctcagt 480 gccaaagaag cacaggatgt gattatggaa gttgttttcc caaatgaagt gggggcaaga 540 atactgacat cagagtcaca gctggcaata acaaaagaga agaaagaaga gctccagaat 600 tgtaaaattg ctcccttgat ggtggcgtac atgctagaaa gagaattggt ccgtaaaaca 660 aggtttctcc cggtagccgg tgggacaggc agtgtttata ttgaggtgtt acacttgacc 720 caagggacgt gctgggagca gatgtacact ccaggaggag aagtgagaaa tgatgatgtt 780 gaccaaagct tgattatcgc tgctagaaac atagtaagaa gagcagcagt gtcagcagac 840 ccattagcat ctctcttgga aatgtgccac agcacacaga ttggaggtgt gaagatggtg 900 gacatcctta aacagaatcc aactgaggag caagccgtag acatatgcaa ggcagcaata 960 gggttgagga tcagctcatc ttttagtttt ggtgggttca ctttcaaaag gacaagcgga 1020 tcatcagtca agaaagaaga agaaatgctg acgggcaacc tccaaacact gaaattaaga 1080 gtacatgaag ggtatgaaga attcacaatg gttgggagaa gagcaacagc tattctcaga 1140 aaggcaacca ggagattgat ccaattaata gtaagcggga gagacgagca gtcaatagct 1200 gragcaataa ttgtggccat ggtattctca caagaggatt gcatgatcaa agcagttagg 1260 ggcgatctga actttgtcaa tagggcaaac cagagactga atcccatgca ccaactcttg 1320 aggcatttcc aaaaagatgc aaaagtgctt ttccagaact ggggaattga aaccatcgac 1380 aatgtgatgg gaatgatcgg aatactgccc gacatgaccc caagcacgga gatgtcactg 1440 agaggaataa gagtcagcaa gatgggagta gatgaatact ccagcacgga gagagtggta 1500 gtgagtattg accgattttt gagggttaga gatcaaagag gaaacgtact attgtctccc 1560 gaagaggtca gtgaaacgca aggaactgag aagttgacaa taacttattc gtcatcaatg 1620 atgtgggaaa tcaacggccc tgagtcagtg ctagtcaaca cttatcaatg gataatcaga 1680 aactgggaaa ttgtgaaaat tcaatggtca caagacccca caatgttata caacaaaatg 1740 gaatttgaac catttcagtc tcttgtccct aaggcaacca gaagccggta cagtggattc 1800 gtaaggacac tgttccagca aatgagggat gtgcttggga catttgacac tgtccaaata 1860 ataaaacttc tcccctttgc tgctgctcca ccagaacaga gcaggatgca attttcttca 1920 ttgactgtga atgtgagagg atcagggtta aggatactgg taagaggcaa ttctccagta 1980 ttcaattaca acaaggcaac caaacgactt acggttcttg gaaaggatgc aggtgcattg 2040 actgaagatc cagatgaagg cacatctgga gtggagtctg ctgtcctgag aggattcctc 2100 attttaggca aagaagacaa gagatatggc ccagcattaa gcatcaatga actgagcaat 2160 cttgcaaaag gagagaaagc taatgtgcta attgggcagg gggacatagt gttggtaatg 2220 aaacgaaaac gggactctag catacttact gacagccaga cagcgaccaa aagaattcgg 2280 atggccatca attagtgtcg aattgtttaa aaacga 2316 // ID MT167167; SV 1; linear; viral cRNA; STD; VRL; 2316 BP. XX AC MT167167; XX PR Project:PRJNA37813; XX DT 17-MAR-2020 (Rel. 144, Created) DT 17-MAR-2020 (Rel. 144, Last updated, Version 1) XX DE Influenza A virus (A/Alabama/27/2019(H1N1)) segment 2 polymerase PB1 (PB1) DE gene, complete cds; and nonfunctional PB1-F2 protein (PB1-F2) gene, DE complete sequence. XX KW . XX OS Influenza A virus OC Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Insthoviricetes; OC Articulavirales; Orthomyxoviridae; Alphainfluenzavirus. XX RN [1] RP 1-2316 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT "Influenza Sequencing Activity group"; RL Unpublished. XX RN [2] RP 1-2316 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT ; RL Submitted (09-MAR-2020) to the INSDC. RL WHO Collaborating Center for Surveillance, Epidemiology and Control of RL Influenza, Influenza Division, Centers for Disease Control and Prevention, RL 1600 Clifton Road, N.E., Atlanta, GA 30333, USA XX DR MD5; 0c701581f4c0b3e7f442749c0e84dcc7. XX CC ##FluData-START## CC EPI_ISOLATE_ID :: EPI_ISL_409204 CC NAME :: A/Alabama/27/2019 CC TYPE :: H1N1 CC Segment_name :: PB1 CC HOST_GENDER :: M CC PASSAGE :: C1 (2020-01-15) CC LOCATION :: United States / Alabama CC COLLECT_DATE :: 23-Dec-2019 CC Lineage :: A(H1N1)pdm09 CC RESIST_TO_OSELTAMIVIR :: Sensitive CC RESIST_TO_ZANAMVIR :: Sensitive CC SPECIMEN_ID :: M1912015589 ORIGINAL CC CHARACTERIZATION :: A/BRISBANE/02/2018-LIKE (H1N1)pdm09 CC SENDER_LAB :: ADPH Bureau of Clinical Laboratories CC SEQLAB_SAMPLE_ID :: 3026054470 CC EPI_SEQUENCE_ID :: EPI1684483 CC ##FluData-END## XX FH Key Location/Qualifiers FH FT source 1..2316 FT /organism="Influenza A virus" FT /segment="2" FT /host="Homo sapiens" FT /strain="A/Alabama/27/2019" FT /serotype="H1N1" FT /mol_type="viral cRNA" FT /country="USA:Alabama" FT /collection_date="23-Dec-2019" FT /db_xref="taxon:11320" FT gene 13..2286 FT /gene="PB1" FT CDS 13..2286 FT /codon_start=1 FT /gene="PB1" FT /product="polymerase PB1" FT /protein_id="QIJ23647.1" FT /translation="MDVNPTLLFLKIPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNR FT THQYSEKGKWTTNTETGAPQLNPVDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFE FT NSCLETMEVVQQTRVDKLTQGRQTYDWTLNRNQPAATALANTIEVFRSNDLTANESGRL FT IDFLKDVMESMNKEEIEITTHFQRKRRVRDNMTKKMVTQRTIGKKKQRLNKRGYLIRAL FT TLNTMTKDAERGKLKRRAIATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAK FT LANVVRKMMTNSQDTEISFTITGDNTKWNENQNPRMFLAMITYITRNQPEWFRNILSMA FT PIMFSNKMARLGKGYMFESKRMKIRTQIPAEMLASIDLKYFNESTKKKIEKIRPLLMDG FT TASLSPGMMMGMFNMLSTVLGVSILNLGQKKYTKTTYWWDGLQSSDDFALIVNAPNHEG FT IQAGVDRFYRTCKLVGINMSKKKSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSGV FT NESADMSIGVTVIKNNMINNDLGPATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFEL FT KKLWDQTQSKVGLLVSDGGPNLYNIRNLHIPEVCLKWELMDDDYRGRLCNPLNPFVSHK FT EIDSVNNAVVMPAHGPAKSMEYDAVATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCN FT LFEKFFPSSSYRRPVGISSMVEAMVSRARIDARVDFESGRIKKEEFSEIMKICSTIEEL FT RRQK" FT gene 107..379 FT /gene="PB1-F2" FT misc_feature 107..379 FT /gene="PB1-F2" FT /note="nonfunctional PB1-F2 protein due to mutation" XX SQ Sequence 2316 BP; 830 A; 438 C; 520 G; 528 T; 0 other; caaaccattt gaatggatgt caatccgact ctacttttcc taaaaattcc agcacaaaat 60 gccataagca ccacattccc ttatactgga gatcctccat acagccatgg gacaggaaca 120 ggatacacca tggacacagt aaacagaaca catcaatact cagaaaaggg gaagtggaca 180 acaaacacag agactggtgc gccccagctc aacccggttg acggaccact acctgaagat 240 aatgaaccaa gtgggtatgc acaaacagac tgtgttctag aggcgatggc tttccttgaa 300 gaatcccatc caggaatatt tgagaattca tgccttgaaa caatggaagt tgttcaacaa 360 acaagggtag ataaactgac tcaaggtcgc cagacttatg attggacatt aaacagaaat 420 caaccggcag caactgcatt ggccaacacc atagaagttt tcaggtcgaa tgacctaaca 480 gctaacgagt caggaaggct aatagatttc ttaaaggatg tgatggaatc aatgaacaaa 540 gaggaaatag agataacaac ccactttcaa agaaaaagga gagtaagaga caacatgacc 600 aagaagatgg tcacgcaaag aacaatagga aagaagaaac agaggctgaa taagagaggc 660 tatctaataa gagcactgac attaaatacg atgaccaaag atgcagagag aggcaagtta 720 aaaagaaggg ctatcgcaac acctgggatg cagattagag gtttcgtata ctttgttgaa 780 actttagcta ggagcatttg cgaaaagctt gaacagtctg ggctcccagt aggaggcaat 840 gaaaagaagg ccaaattggc aaatgttgtg agaaagatga tgactaattc acaagataca 900 gagatctctt tcacaatcac tggggacaac actaaatgga atgaaaatca aaatcctcga 960 atgttcctgg cgatgattac atatatcacc agaaatcaac ccgagtggtt tagaaacatc 1020 ctgagcatgg cacccataat gttctcaaac aaaatggcaa gactaggaaa aggatacatg 1080 ttcgagagta aaagaatgaa gattcgaaca caaataccag cagaaatgct agcaagcatt 1140 gatctaaagt atttcaatga atcaacaaag aagaaaattg agaaaataag gcctctttta 1200 atggatggca cagcatcact gagtcctggg atgatgatgg gcatgttcaa catgctaagt 1260 acggtcttgg gagtctcgat actgaatctt ggacaaaaga aatacaccaa gacaacatac 1320 tggtgggatg ggctccaatc atctgacgat tttgctctca tagtgaatgc accaaaccat 1380 gaaggaatac aagcaggagt ggacagattc tacaggacct gcaagttagt gggaatcaac 1440 atgagcaaaa agaaatccta tataaataag acagggacat ttgaattcac aagctttttt 1500 tatcgctatg gatttgtggc taattttagc atggagctac ccagctttgg agtgtctgga 1560 gtaaatgaat cagctgacat gagtattgga gtaacagtaa taaagaacaa catgataaac 1620 aatgaccttg gacctgcaac ggctcagatg gctcttcaat tattcatcaa agactacaga 1680 tacacatata ggtgtcatag gggagacaca caaattcaga cgagaagatc atttgagttg 1740 aagaagctat gggatcaaac ccaatcaaag gtagggctat tagtatcaga tggaggacca 1800 aacttataca acatacggaa tcttcacatt cctgaagtct gcttaaaatg ggagctaatg 1860 gatgatgatt atcggggaag actttgtaac cccctgaatc cctttgtgag tcataaggag 1920 attgattctg taaacaatgc tgtggtaatg ccagcccatg gcccagccaa aagcatggaa 1980 tatgatgccg ttgctactac acattcctgg attcccaaga ggaatcgttc tattctcaac 2040 acaagccaaa ggggaattct tgaggatgaa cagatgtacc agaagtgttg caatttattc 2100 gagaaatttt tccctagcag ttcatatagg agaccggttg gaatttctag catggtggag 2160 gccatggtgt ctagggcccg gattgatgcc agagtcgact ttgagtctgg acggatcaag 2220 aaagaagagt tctctgagat catgaagatc tgttccacca ttgaagaact cagacggcaa 2280 aaataatgaa tttaacttgt ccttcatgaa aaaatg 2316 // ID MT167168; SV 1; linear; viral cRNA; STD; VRL; 2208 BP. XX AC MT167168; XX PR Project:PRJNA37813; XX DT 17-MAR-2020 (Rel. 144, Created) DT 17-MAR-2020 (Rel. 144, Last updated, Version 1) XX DE Influenza A virus (A/Alabama/27/2019(H1N1)) segment 3 polymerase PA (PA) DE and PA-X protein (PA-X) genes, complete cds. XX KW . XX OS Influenza A virus OC Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Insthoviricetes; OC Articulavirales; Orthomyxoviridae; Alphainfluenzavirus. XX RN [1] RP 1-2208 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT "Influenza Sequencing Activity group"; RL Unpublished. XX RN [2] RP 1-2208 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT ; RL Submitted (09-MAR-2020) to the INSDC. RL WHO Collaborating Center for Surveillance, Epidemiology and Control of RL Influenza, Influenza Division, Centers for Disease Control and Prevention, RL 1600 Clifton Road, N.E., Atlanta, GA 30333, USA XX DR MD5; cac4adcf917b20ac8f9aab555fef07f7. XX CC ##FluData-START## CC EPI_ISOLATE_ID :: EPI_ISL_409204 CC NAME :: A/Alabama/27/2019 CC TYPE :: H1N1 CC Segment_name :: PA CC HOST_GENDER :: M CC PASSAGE :: C1 (2020-01-15) CC LOCATION :: United States / Alabama CC COLLECT_DATE :: 23-Dec-2019 CC Lineage :: A(H1N1)pdm09 CC RESIST_TO_OSELTAMIVIR :: Sensitive CC RESIST_TO_ZANAMVIR :: Sensitive CC SPECIMEN_ID :: M1912015589 ORIGINAL CC CHARACTERIZATION :: A/BRISBANE/02/2018-LIKE (H1N1)pdm09 CC SENDER_LAB :: ADPH Bureau of Clinical Laboratories CC SEQLAB_SAMPLE_ID :: 3026054470 CC EPI_SEQUENCE_ID :: EPI1684481 CC ##FluData-END## XX FH Key Location/Qualifiers FH FT source 1..2208 FT /organism="Influenza A virus" FT /segment="3" FT /host="Homo sapiens" FT /strain="A/Alabama/27/2019" FT /serotype="H1N1" FT /mol_type="viral cRNA" FT /country="USA:Alabama" FT /collection_date="23-Dec-2019" FT /db_xref="taxon:11320" FT gene 13..2163 FT /gene="PA" FT CDS 13..2163 FT /codon_start=1 FT /gene="PA" FT /product="polymerase PA" FT /protein_id="QIJ23648.1" FT /translation="MEDFVRQCFNPMVVELAEKAMKEYGEDPKIETNKFAAICTHLEVC FT FMYSDLHFIDERGESIIVESGDPNALLKHRFEIIEGRDRIMAWTVVNSICNTTGIEKPK FT FLPDLYDYKENRFIEIGVTRREVHIYYLEKANKIKSEKTHIHIFSFTGEEMATKADYTL FT DEESRARIKTRLFTIRQEMASRSLWDSFRQSERGEETIEEKFEITGTMRKLADQSLPPN FT FSSLENFRAYVDGFEPNGCIEGKLSQMSKEVNAKIEPFLRTTPRPLRLPDGPLCHQRSK FT FLLMDALKLSIEDPSHEGEGIPLYDAIKCMKTFFGWKEPKIVKPHEKGVNPNYLMAWKQ FT VLAELQDIENEEKIPRTKNMKKTSQLKWALGENMAPEKVDFDDCKDVGDLKQYDSDEPE FT LRSLASWVQNEFNKACELTDSSWIELDEIGEDVAPIEYIASMRRNYFTAEVSHCRATEY FT IMKGVYINTALLNASCAAMDDFQLIPMISKCRTKEGRRKTNLYGFIIKGRSHLRNDTDV FT VNFVSMEFSLTDPRLEPHKWEKYCVLEIGDMLLRTAIGQVSRPMFLYVRTNGTSKIKMK FT WGMEMRRCLLQSLQQIESMIEAESSVKEKDMTKEFFENKSETWPIGESPRGVEEGSIGK FT VCRTLLAKSVFNSLYASPQLEGFSAESRKLLLIVQALRDNLEPGTFDLGGLYEAIEECL FT INDPWVLLNASWFNSFLTHALK" FT gene 13..712 FT /gene="PA-X" FT CDS join(13..582,584..712) FT /codon_start=1 FT /ribosomal_slippage FT /gene="PA-X" FT /product="PA-X protein" FT /protein_id="QIJ23649.1" FT /translation="MEDFVRQCFNPMVVELAEKAMKEYGEDPKIETNKFAAICTHLEVC FT FMYSDLHFIDERGESIIVESGDPNALLKHRFEIIEGRDRIMAWTVVNSICNTTGIEKPK FT FLPDLYDYKENRFIEIGVTRREVHIYYLEKANKIKSEKTHIHIFSFTGEEMATKADYTL FT DEESRARIKTRLFTIRQEMASRSLWDSFVSPKEAKKQLKKSLRLQELCASLPTKVSHQT FT SPVLKTSEPM" XX SQ Sequence 2208 BP; 745 A; 421 C; 517 G; 525 T; 0 other; tactgatcca aaatggaaga ctttgtgcga caatgcttca atccaatggt cgtcgagctt 60 gcggaaaagg caatgaaaga atatggggaa gaccccaaaa tcgaaactaa taaatttgct 120 gcaatttgca cacatttgga agtttgtttc atgtattcgg atttacattt cattgatgaa 180 cggggtgaat caataattgt agaatctggt gacccaaatg cactattgaa gcaccgattt 240 gagataattg aaggaagaga ccgaatcatg gcctggacag tggtgaacag tatatgtaac 300 acaacaggga tagagaagcc taaatttctt cctgatttgt atgattacaa agagaaccgg 360 ttcattgaaa ttggggtaac acggagagaa gtccacatat attacctaga gaaagccaac 420 aaaataaaat ctgagaagac acacattcac atcttttcat tcactggaga ggaaatggcc 480 accaaagcgg actacaccct tgacgaagag agcagagcaa gaatcaaaac taggcttttc 540 actataagac aagaaatggc cagtaggagt ctatgggatt cctttcgtca gtccgaaaga 600 ggcgaagaaa caattgaaga aaagtttgag attacaggaa ctatgcgcaa gcttgccgac 660 caaagtctcc caccaaactt ctccagtctt gaaaacttca gagcctatgt agatggattc 720 gagccgaacg gctgcattga gggcaagctt tcccaaatgt caaaagaagt gaacgccaaa 780 attgaaccat tcttgaggac gacaccacgc cccctcagat tacctgatgg acctctttgc 840 catcagcggt caaagttcct gctgatggat gctctgaaat taagcattga agacccgagt 900 cacgaggggg aaggaatacc actatatgat gcaatcaaat gcatgaagac attctttggc 960 tggaaagagc ctaaaatagt caaaccacat gagaaaggcg taaatcccaa ttacctcatg 1020 gcttggaagc aggtgctagc agagctacag gacattgaaa atgaagagaa aatcccaaga 1080 acaaagaaca tgaagaaaac aagccaattg aagtgggcac tcggtgaaaa tatggcacca 1140 gaaaaagtgg actttgatga ctgtaaagat gttggagacc ttaaacagta tgacagtgat 1200 gagccagagc tcagatctct agcaagctgg gtccaaaatg aattcaataa ggcatgtgaa 1260 ttgactgatt caagctggat agaacttgat gaaatagggg aagatgttgc cccgattgaa 1320 tatatagcaa gcatgaggag gaactatttt acagcagaag tgtcccactg cagggctact 1380 gaatacataa tgaagggagt gtacataaat acggccttgc tcaatgcatc ctgtgcagcc 1440 atggatgact ttcagctgat tccaatgata agcaaatgta ggaccaaaga aggaagacgg 1500 aaaacaaacc tgtatgggtt cattataaaa ggaaggtctc atttgagaaa tgatactgat 1560 gtagtgaact ttgtaagtat ggagttctca ctcactgatc caagattgga accacacaaa 1620 tgggaaaaat actgtgttct tgaaatagga gacatgctat tgaggactgc aataggccaa 1680 gtgtcgaggc ccatgttcct atatgtgaga accaatggaa cctccaagat caagatgaaa 1740 tggggcatgg aaatgaggcg ctgccttctt caatctcttc agcagattga gagcatgatt 1800 gaagccgagt cttctgtcaa agagaaagac atgaccaaag aattctttga aaacaaatcg 1860 gaaacatggc caatcggaga gtcacccagg ggagtggagg aaggctctat tggaaaagtg 1920 tgcagaacct tactggcaaa atctgtgttc aacagtctat atgcttctcc acaacttgag 1980 gggttttcgg ctgaatcaag aaaattgctt ctcattgttc aggcacttag ggacaacctg 2040 gaacctggaa cctttgatct tggggggcta tatgaagcaa tcgaggagtg cttgattaat 2100 gatccctggg ttttgcttaa tgcatcttgg ttcaactcct tcctcacaca tgcactgaag 2160 tagttgtagc aatgctacta tttgctatcc atattgtcca aaaaagta 2208 // ID MT167169; SV 1; linear; viral cRNA; STD; VRL; 1752 BP. XX AC MT167169; XX PR Project:PRJNA37813; XX DT 17-MAR-2020 (Rel. 144, Created) DT 17-MAR-2020 (Rel. 144, Last updated, Version 1) XX DE Influenza A virus (A/Alabama/27/2019(H1N1)) segment 4 hemagglutinin (HA) DE gene, complete cds. XX KW . XX OS Influenza A virus OC Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Insthoviricetes; OC Articulavirales; Orthomyxoviridae; Alphainfluenzavirus. XX RN [1] RP 1-1752 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT "Influenza Sequencing Activity group"; RL Unpublished. XX RN [2] RP 1-1752 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT ; RL Submitted (09-MAR-2020) to the INSDC. RL WHO Collaborating Center for Surveillance, Epidemiology and Control of RL Influenza, Influenza Division, Centers for Disease Control and Prevention, RL 1600 Clifton Road, N.E., Atlanta, GA 30333, USA XX DR MD5; f769993b1f9df8280a9dae9161dc84b2. XX CC ##FluData-START## CC EPI_ISOLATE_ID :: EPI_ISL_409204 CC NAME :: A/Alabama/27/2019 CC TYPE :: H1N1 CC Segment_name :: HA CC HOST_GENDER :: M CC PASSAGE :: C1 (2020-01-15) CC LOCATION :: United States / Alabama CC COLLECT_DATE :: 23-Dec-2019 CC Lineage :: A(H1N1)pdm09 CC RESIST_TO_OSELTAMIVIR :: Sensitive CC RESIST_TO_ZANAMVIR :: Sensitive CC SPECIMEN_ID :: M1912015589 ORIGINAL CC CHARACTERIZATION :: A/BRISBANE/02/2018-LIKE (H1N1)pdm09 CC SENDER_LAB :: ADPH Bureau of Clinical Laboratories CC SEQLAB_SAMPLE_ID :: 3026054470 CC EPI_SEQUENCE_ID :: EPI1684485 CC ##FluData-END## XX FH Key Location/Qualifiers FH FT source 1..1752 FT /organism="Influenza A virus" FT /segment="4" FT /host="Homo sapiens" FT /strain="A/Alabama/27/2019" FT /serotype="H1N1" FT /mol_type="viral cRNA" FT /country="USA:Alabama" FT /collection_date="23-Dec-2019" FT /db_xref="taxon:11320" FT gene 21..1721 FT /gene="HA" FT CDS 21..1721 FT /codon_start=1 FT /gene="HA" FT /product="hemagglutinin" FT /function="receptor binding and fusion protein" FT /protein_id="QIJ23650.1" FT /translation="MKAILVVLLYTFTTANADTLCIGYHANNSTDTVDTVLEKNVTVTH FT SVNLLEDKHNGKLCKLRGVAPLHLGKCNIAGWILGNPECDSLSTARSWSYIVETSNSDN FT GTCYPGDFINYEELREQLSSVSSFERFEIFPKANSWPNHDSNKGVTAACPHAGAKSFYK FT NLIWLVKKGNSYPKINQTYINDKGKEVLVLWGIHHPPTTADQQSLYQNADAYVFVGTSK FT YSKKFKPEIATRPKVRDQEGRMNYYWTLVEPGDKITFEATGNLVVPRYAFTMERNAGSG FT IIISDTPVHDCNTTCQTPEGAINTSLPFQNVHPITIGTCPKYVKSTKLRLATGLRNVPS FT IQSRGLFGAIAGFIEGGWTGMVDGWYGYHHQNEQGSGYAADLKSTQNAIDKITNKVNSV FT IEKMNTQFTAVGKEFNHLEKRMENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSN FT VKNLYEKVRNQLKNNAKEIGNGCFEFYHKCDNTCMESVKNGTYDYPKYSEEAKLSREKI FT DGVKLDSTRIYQILAIYSTVASSLVLVVSLGAISFWMCSNGSLQCRICI" FT sig_peptide 21..71 FT /gene="HA" FT mat_peptide 72..1052 FT /gene="HA" FT /product="HA1" FT mat_peptide 1053..1718 FT /gene="HA" FT /product="HA2" XX SQ Sequence 1752 BP; 630 A; 330 C; 381 G; 411 T; 0 other; ggaaaacaaa agcaacaaaa atgaaggcaa tactagtagt tctgctgtat acatttacaa 60 ccgcaaacgc agacacatta tgtataggtt atcatgcgaa caattcaaca gacactgtag 120 atacagtact agaaaagaat gtaacagtaa cacactctgt taatcttctg gaagacaagc 180 ataacggaaa actatgcaaa ctaagagggg tagccccatt gcatttgggt aaatgcaaca 240 ttgctggctg gatcctggga aatccagagt gtgactcact ctccacagca agatcatggt 300 cctacattgt ggaaacgtct aattcagaca atggaacatg ttacccagga gatttcatca 360 attatgagga gctaagagag caattgagct cagtgtcatc atttgaaagg tttgaaatat 420 tccccaaggc aaattcatgg cctaatcatg actcgaacaa aggtgtaacg gcagcatgtc 480 ctcacgctgg agcaaaaagc ttctacaaaa acttgatatg gctggttaaa aaaggaaatt 540 catacccaaa gatcaaccaa acctacatta atgataaagg gaaagaagtc ctcgtgctgt 600 ggggcattca tcatccacct actactgctg accaacaaag tctctatcag aatgcagatg 660 catatgtttt tgtggggaca tcaaaataca gcaagaagtt caagccggaa atagcaacaa 720 gacccaaagt gagggatcaa gaagggagaa tgaactatta ctggacacta gtagagccgg 780 gagacaaaat aacattcgaa gcaactggaa atctagtggt accgagatat gcattcacaa 840 tggaaagaaa tgctggatct ggtattatca tttcagatac accagtccac gactgcaata 900 caacttgtca gacccccgag ggtgctataa acaccagtct cccatttcag aatgtacatc 960 cgatcacaat tgggacatgt ccaaagtatg taaaaagcac aaaattgaga ctggccacag 1020 gattgaggaa tgtcccgtct attcaatcta gaggcctatt cggggccatt gccggcttca 1080 ttgaaggggg gtggacaggg atggtagatg gatggtatgg ttatcaccat caaaatgaac 1140 aggggtcagg atatgcagcc gatctgaaga gcacacaaaa tgccattgat aagattacta 1200 acaaagtaaa ttctgttatt gaaaagatga atacacagtt cacagcagtg ggtaaagagt 1260 tcaaccacct tgaaaaaaga atggaaaatc taaataaaaa agttgatgat ggtttcttgg 1320 acatttggac ttacaatgcc gaactgttgg ttctgctgga aaatgaaaga actttagact 1380 atcacgattc aaatgtgaag aacttgtatg aaaaagtaag aaaccagtta aaaaacaatg 1440 ccaaagaaat tggaaatggc tgctttgaat tttaccacaa atgcgataac acatgcatgg 1500 aaagtgtcaa gaatgggact tacgactacc caaaatactc agaggaagca aaactaagca 1560 gagaaaaaat agatggagta aagctggact caacaaggat ctaccagatt ttggcgatct 1620 attcaactgt cgccagttca ttggtactgg tagtctccct gggggcaatc agcttctgga 1680 tgtgctctaa tgggtctcta cagtgtagaa tatgtattta acattaggat ttcagaatca 1740 tgagaaaaac ac 1752 // ID MT167170; SV 1; linear; viral cRNA; STD; VRL; 1540 BP. XX AC MT167170; XX PR Project:PRJNA37813; XX DT 17-MAR-2020 (Rel. 144, Created) DT 17-MAR-2020 (Rel. 144, Last updated, Version 1) XX DE Influenza A virus (A/Alabama/27/2019(H1N1)) segment 5 nucleocapsid protein DE (NP) gene, complete cds. XX KW . XX OS Influenza A virus OC Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Insthoviricetes; OC Articulavirales; Orthomyxoviridae; Alphainfluenzavirus. XX RN [1] RP 1-1540 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT "Influenza Sequencing Activity group"; RL Unpublished. XX RN [2] RP 1-1540 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT ; RL Submitted (09-MAR-2020) to the INSDC. RL WHO Collaborating Center for Surveillance, Epidemiology and Control of RL Influenza, Influenza Division, Centers for Disease Control and Prevention, RL 1600 Clifton Road, N.E., Atlanta, GA 30333, USA XX DR MD5; 82ed2582a65ead49f90ecf9aadd6b9b2. XX CC ##FluData-START## CC EPI_ISOLATE_ID :: EPI_ISL_409204 CC NAME :: A/Alabama/27/2019 CC TYPE :: H1N1 CC Segment_name :: NP CC HOST_GENDER :: M CC PASSAGE :: C1 (2020-01-15) CC LOCATION :: United States / Alabama CC COLLECT_DATE :: 23-Dec-2019 CC Lineage :: A(H1N1)pdm09 CC RESIST_TO_OSELTAMIVIR :: Sensitive CC RESIST_TO_ZANAMVIR :: Sensitive CC SPECIMEN_ID :: M1912015589 ORIGINAL CC CHARACTERIZATION :: A/BRISBANE/02/2018-LIKE (H1N1)pdm09 CC SENDER_LAB :: ADPH Bureau of Clinical Laboratories CC SEQLAB_SAMPLE_ID :: 3026054470 CC EPI_SEQUENCE_ID :: EPI1684478 CC ##FluData-END## XX FH Key Location/Qualifiers FH FT source 1..1540 FT /organism="Influenza A virus" FT /segment="5" FT /host="Homo sapiens" FT /strain="A/Alabama/27/2019" FT /serotype="H1N1" FT /mol_type="viral cRNA" FT /country="USA:Alabama" FT /collection_date="23-Dec-2019" FT /db_xref="taxon:11320" FT gene 34..1530 FT /gene="NP" FT CDS 34..1530 FT /codon_start=1 FT /gene="NP" FT /product="nucleocapsid protein" FT /protein_id="QIJ23651.1" FT /translation="MASQGTKRSYEQMETGGERQDTTEIRASVGRMIGGIGRFYIQMCT FT ELKLSDYDGRLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRIDGKW FT TRELILYDKEEIRRVWRQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRM FT CSLMQGSTLPRRSGAAGAAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTRVAYERM FT CNILKGKFQTAAQRAMMDQVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVY FT GLAVASGHDFEREGYSLVGIDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFED FT LRVSSFIRGKKVIPRGKLSTRGVQIASNENVETMDSNTLELRSRYWAIRTRSGGNTNQQ FT KASAGQISVQPTFSVQRNLPFERATVMAAFSGNNEGRTSDMRTEVIRMMESAKPEDLSF FT QGRGVFELSDEKATNPIVPSFDMSNEGSYFFGDNAEEYDN" XX SQ Sequence 1540 BP; 521 A; 297 C; 397 G; 325 T; 0 other; gtagataatc actcaatgag tgacatcgaa gccatggcgt ctcaaggcac caaacgatca 60 tatgaacaaa tggagactgg tggggagcgc caggatacca cagaaatcag agcatctgtt 120 ggaagaatga ttggtggaat cgggagattc tacatccaaa tgtgcactga attaaaactc 180 agtgattatg atggacgact aatccagaat agcataacaa tagagaggat ggtgctttct 240 gcttttgatg agagaagaaa taaataccta gaagagcatc cgagtgctgg gaaggaccct 300 aagaaaacag gaggacccat ctatagaaga atagacggaa aatggacgag agaactcatc 360 ctttatgaca aagaagaaat aaggagagtt tggcgccaag caaacaatgg cgaagatgca 420 acagcaggtc ttactcatat catgatttgg cattccaatc tgaatgatgc cacataccag 480 aggacaagag cacttgttcg cactggaatg gatcccagaa tgtgctctct aatgcaaggc 540 tcaacacttc ccaggaggtc tggtgccgca ggtgctgcag taaaaggagt tggaacaata 600 gctatggagt taatcagaat gataaaacgt ggaatcaatg accgaaattt ctggaggggt 660 gaaaatggac gaaggacaag agttgcttat gaaagaatgt gcaatatcct caaaggaaaa 720 tttcaaacag ctgcccagag ggcaatgatg gatcaagtaa gagaaagtcg aaacccagga 780 aacgcagaga ttgaagacct cattttcctg gcacggtcag cactcattct gagaggatca 840 gttgcacata aatcctgtct gcctgcttgt gtgtatgggc ttgcagtagc aagtggccat 900 gactttgaaa gggaagggta ctcactggtc gggatagacc cattcaaatt actccaaaac 960 agtcaagtgg tcagtctgat gagaccaaat gaaaatccag ctcacaagag tcaattggta 1020 tggatggcat gccactctgc tgcatttgaa gatttaagag tatcaagttt cataagagga 1080 aagaaagtga tcccaagagg aaagctttcc actagagggg ttcagattgc ttcaaatgag 1140 aatgtggaaa ccatggactc caataccctg gaactaagaa gcagatactg ggccataaga 1200 accaggagtg gaggaaatac caatcaacag aaggcatccg caggccagat cagtgtgcag 1260 cctacattct cagtgcagcg aaatctccct ttcgaaagag caaccgttat ggcagcattc 1320 agcgggaaca atgaaggacg gacatccgac atgcgaacag aagttataag aatgatggaa 1380 agtgcaaagc cagaggattt gtccttccag gggcggggag tcttcgagct ctcggacgaa 1440 aaggcaacga acccgatcgt gccttccttt gacatgagta atgaagggtc ttatttcttc 1500 ggagacaatg cagaggagta tgacaattga agaaaaatac 1540 // ID MT167171; SV 1; linear; viral cRNA; STD; VRL; 1433 BP. XX AC MT167171; XX PR Project:PRJNA37813; XX DT 17-MAR-2020 (Rel. 144, Created) DT 17-MAR-2020 (Rel. 144, Last updated, Version 1) XX DE Influenza A virus (A/Alabama/27/2019(H1N1)) segment 6 neuraminidase (NA) DE gene, complete cds. XX KW . XX OS Influenza A virus OC Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Insthoviricetes; OC Articulavirales; Orthomyxoviridae; Alphainfluenzavirus. XX RN [1] RP 1-1433 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT "Influenza Sequencing Activity group"; RL Unpublished. XX RN [2] RP 1-1433 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT ; RL Submitted (09-MAR-2020) to the INSDC. RL WHO Collaborating Center for Surveillance, Epidemiology and Control of RL Influenza, Influenza Division, Centers for Disease Control and Prevention, RL 1600 Clifton Road, N.E., Atlanta, GA 30333, USA XX DR MD5; 3e347025efdb51790396f18ea0f7d758. XX CC ##FluData-START## CC EPI_ISOLATE_ID :: EPI_ISL_409204 CC NAME :: A/Alabama/27/2019 CC TYPE :: H1N1 CC Segment_name :: NA CC HOST_GENDER :: M CC PASSAGE :: C1 (2020-01-15) CC LOCATION :: United States / Alabama CC COLLECT_DATE :: 23-Dec-2019 CC Lineage :: A(H1N1)pdm09 CC RESIST_TO_OSELTAMIVIR :: Sensitive CC RESIST_TO_ZANAMVIR :: Sensitive CC SPECIMEN_ID :: M1912015589 ORIGINAL CC CHARACTERIZATION :: A/BRISBANE/02/2018-LIKE (H1N1)pdm09 CC SENDER_LAB :: ADPH Bureau of Clinical Laboratories CC SEQLAB_SAMPLE_ID :: 3026054470 CC EPI_SEQUENCE_ID :: EPI1684484 CC ##FluData-END## XX FH Key Location/Qualifiers FH FT source 1..1433 FT /organism="Influenza A virus" FT /segment="6" FT /host="Homo sapiens" FT /strain="A/Alabama/27/2019" FT /serotype="H1N1" FT /mol_type="viral cRNA" FT /country="USA:Alabama" FT /collection_date="23-Dec-2019" FT /db_xref="taxon:11320" FT gene 9..1418 FT /gene="NA" FT CDS 9..1418 FT /codon_start=1 FT /gene="NA" FT /product="neuraminidase" FT /protein_id="QIJ23652.1" FT /translation="MNPNQKIITIGSICMTIGMANLILQIGNIISIWVSHSIQIGNQSQ FT IETCNQSVITYENNTWVNQTYVNISNTNFAARQSVASVKLAGNSSLCPVSGWAIYSKDN FT SVRIGSKGDVFVIREPFISCSPLECRTFFLTQGALLNDKHSNGTIKDRSPYRTLMSCPI FT GEVPSPYNSRFESVAWSASACHDGINWLTIGISGPDSGAVAVLKYNGIITDTIKSWRNN FT ILRTQESECACVNGSCFTIMTDGPSDGQASYKIFRIEKGKIIKSVEMKAPNYHYEECSC FT YPDSSEVTCVCRDNWHGSNRPWVSFNQNLEYQIGYICSGVLGDNPRPNDKTGSCGPVSS FT NGANGVKGFSFKYGNGVWIGRTKSISSRKGFEMIWDPNGWTGTDNKFSIKQDIVGINEW FT SGYSGSFVQHPELTGLDCIRPCFWVELIRGRPEENTIWTSGSSISFCGVDSDTVGWSWP FT DGAELPFTIDK" XX SQ Sequence 1433 BP; 459 A; 263 C; 337 G; 374 T; 0 other; agtttaaaat gaatccaaac caaaagataa taaccattgg ttcgatctgt atgacaattg 60 gaatggctaa cttaatatta caaattggaa acataatctc aatatgggtt agccactcaa 120 ttcaaattgg aaatcaaagc cagattgaaa catgcaatca aagcgtcatt acttatgaga 180 acaacacttg ggtaaatcag acatatgtta acatcagcaa caccaacttt gctgctagac 240 agtcagtggc ttccgtgaaa ttagcgggca attcctctct ctgccctgtt agtggatggg 300 ctatatacag taaagacaac agtgtaagaa tcggctccaa gggggatgtg tttgtcataa 360 gggaaccatt catatcatgc tctcccttgg aatgcagaac cttcttcttg actcaagggg 420 ctttgctaaa tgacaaacat tccaatggaa ccattaaaga caggagccca tatcgaaccc 480 taatgagctg tcctattggt gaagttccct ctccatacaa ctcaagattt gagtcagtcg 540 cttggtcagc aagtgcttgt catgatggca tcaattggct aacaattgga atttctggcc 600 cagacagtgg ggcagtggct gtgttaaaat acaatggcat aataacagac actatcaaga 660 gttggaggaa caatatattg agaacacaag agtctgaatg tgcatgtgta aatggttctt 720 gctttaccat aatgaccgat ggaccaagtg atggacaggc ctcatacaaa atcttcagaa 780 tagaaaaggg aaagataatc aaatcagttg aaatgaaagc ccctaattat cactatgagg 840 aatgctcctg ttaccctgat tctagtgaag tcacatgtgt gtgcagggat aactggcatg 900 gctcgaatcg accgtgggtg tctttcaacc agaatctgga atatcagata ggatacatat 960 gcagtggggt tctcggagac aatccacgcc ctaatgataa gacaggcagt tgcggtccag 1020 tatcgtctaa tggagcaaat ggagtaaaag gattttcatt caaatacggc aatggtgttt 1080 ggatagggag aactaagagc attagttcaa ggaaaggttt tgagatgatt tgggatccga 1140 atggatggac tgggactgac aataaattct caataaagca agatatcgta ggaataaatg 1200 agtggtcagg gtatagcggg agttttgttc agcatccaga actaacaggg ctggattgta 1260 taagaccttg cttctgggtt gaactaataa gaggacgacc cgaagagaac acaatctgga 1320 ctagcgggag cagcatatcc ttttgtggtg tagacagtga cactgtgggt tggtcttggc 1380 cagacggtgc tgagttgcca tttaccattg acaagtaatt tgttcaaaaa act 1433 // ID MT167172; SV 1; linear; viral cRNA; STD; VRL; 1002 BP. XX AC MT167172; XX PR Project:PRJNA37813; XX DT 17-MAR-2020 (Rel. 144, Created) DT 17-MAR-2020 (Rel. 144, Last updated, Version 1) XX DE Influenza A virus (A/Alabama/27/2019(H1N1)) segment 7 matrix protein 2 (M2) DE and matrix protein 1 (M1) genes, complete cds. XX KW . XX OS Influenza A virus OC Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Insthoviricetes; OC Articulavirales; Orthomyxoviridae; Alphainfluenzavirus. XX RN [1] RP 1-1002 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT "Influenza Sequencing Activity group"; RL Unpublished. XX RN [2] RP 1-1002 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT ; RL Submitted (09-MAR-2020) to the INSDC. RL WHO Collaborating Center for Surveillance, Epidemiology and Control of RL Influenza, Influenza Division, Centers for Disease Control and Prevention, RL 1600 Clifton Road, N.E., Atlanta, GA 30333, USA XX DR MD5; 371a766ece0fb40c7918dedee68da1b8. XX CC ##FluData-START## CC EPI_ISOLATE_ID :: EPI_ISL_409204 CC NAME :: A/Alabama/27/2019 CC TYPE :: H1N1 CC Segment_name :: M CC HOST_GENDER :: M CC PASSAGE :: C1 (2020-01-15) CC LOCATION :: United States / Alabama CC COLLECT_DATE :: 23-Dec-2019 CC Lineage :: A(H1N1)pdm09 CC RESIST_TO_OSELTAMIVIR :: Sensitive CC RESIST_TO_ZANAMVIR :: Sensitive CC SPECIMEN_ID :: M1912015589 ORIGINAL CC CHARACTERIZATION :: A/BRISBANE/02/2018-LIKE (H1N1)pdm09 CC SENDER_LAB :: ADPH Bureau of Clinical Laboratories CC SEQLAB_SAMPLE_ID :: 3026054470 CC EPI_SEQUENCE_ID :: EPI1684480 CC ##FluData-END## XX FH Key Location/Qualifiers FH FT source 1..1002 FT /organism="Influenza A virus" FT /segment="7" FT /host="Homo sapiens" FT /strain="A/Alabama/27/2019" FT /serotype="H1N1" FT /mol_type="viral cRNA" FT /country="USA:Alabama" FT /collection_date="23-Dec-2019" FT /db_xref="taxon:11320" FT gene 14..995 FT /gene="M2" FT CDS join(14..39,728..995) FT /codon_start=1 FT /gene="M2" FT /product="matrix protein 2" FT /protein_id="QIJ23654.1" FT /translation="MSLLTEVETPTRSGWECRCSGSSDPLVIAANIIGILHLILWITDR FT LFFKCIYRRFKYGLKRGPSTEGVPESMREEYQQEQQSAVDVDDGHFVNIELE" FT gene 14..772 FT /gene="M1" FT CDS 14..772 FT /codon_start=1 FT /gene="M1" FT /product="matrix protein 1" FT /protein_id="QIJ23653.1" FT /translation="MSLLTEVETYVLSIIPSGPLKAEIAQRLESVFAGKNTDLEALMEW FT LKTRPILSPLTKGILGFVFTLTVPSERGLQRRRFIQNALNGNGDPNNMDRAVKLYKKLK FT REITFHGAKEVSLSYSTGALASCMGLIYNRMGTVTTEAAFGLVCATCEQIADSQHRSHR FT QMATTTNPLIRHENRMVLASTTAKAMEQVAGSSEQAAEAMEVANKTRQMVHAMRTIGTH FT PSSSAGLRDDLLENLQAYQKRMGVQMQRFK" XX SQ Sequence 1002 BP; 297 A; 209 C; 257 G; 239 T; 0 other; tagatgttta aagatgagtc ttctaaccga ggtcgaaacg tatgttcttt ctatcatccc 60 atcaggcccc ctcaaagccg agatcgcaca gagactggaa agtgtctttg caggaaagaa 120 cacagatctt gaggctctca tggaatggct aaagacaaga ccaatcttgt cacctctgac 180 taagggaatt ttaggatttg tgttcacgct caccgtgccc agtgagcgag gactgcagcg 240 tagacgcttt atccaaaatg ccctaaatgg aaatggggac ccgaacaaca tggatagagc 300 agttaaacta tacaagaagc tcaaaagaga aataacgttc catggggcca aggaggtgtc 360 actaagctat tcaactggtg cacttgcaag ttgcatgggc ctcatataca acaggatggg 420 aacagtgacc acagaagctg ctttcggtct agtttgtgcc acttgtgaac agattgctga 480 ttcacagcat cggtctcaca gacaaatggc tactaccaca aatccactaa tcaggcatga 540 aaacagaatg gtactggcta gcactacggc aaaggctatg gaacaggtgg ctggatcgag 600 tgaacaggca gcggaggcca tggaggttgc taataagact aggcagatgg tgcatgcaat 660 gagaactatt gggactcatc ctagctccag tgctggtctg agagatgacc ttcttgaaaa 720 tttgcaggcc taccagaagc ggatgggagt gcagatgcag cggttcaagt gatcctctcg 780 tcattgcagc aaacatcatt gggatcttgc acctgatatt gtggattact gatcgtcttt 840 ttttcaaatg catttatcgt cgctttaaat acggtctgaa aagagggcct tctacggaag 900 gagtgcctga gtccatgagg gaagaatatc aacaggagca gcagagtgct gtggatgttg 960 acgatggtca ttttgtcaac atagagctag agtaaaaaac ta 1002 // ID MT167173; SV 1; linear; viral cRNA; STD; VRL; 865 BP. XX AC MT167173; XX PR Project:PRJNA37813; XX DT 17-MAR-2020 (Rel. 144, Created) DT 17-MAR-2020 (Rel. 144, Last updated, Version 1) XX DE Influenza A virus (A/Alabama/27/2019(H1N1)) segment 8 nuclear export DE protein (NEP) and nonstructural protein 1 (NS1) genes, complete cds. XX KW . XX OS Influenza A virus OC Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Insthoviricetes; OC Articulavirales; Orthomyxoviridae; Alphainfluenzavirus. XX RN [1] RP 1-865 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT "Influenza Sequencing Activity group"; RL Unpublished. XX RN [2] RP 1-865 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT ; RL Submitted (09-MAR-2020) to the INSDC. RL WHO Collaborating Center for Surveillance, Epidemiology and Control of RL Influenza, Influenza Division, Centers for Disease Control and Prevention, RL 1600 Clifton Road, N.E., Atlanta, GA 30333, USA XX DR MD5; c49b4edb51a5c13280edaf68de0e05b2. XX CC ##FluData-START## CC EPI_ISOLATE_ID :: EPI_ISL_409204 CC NAME :: A/Alabama/27/2019 CC TYPE :: H1N1 CC Segment_name :: NS CC HOST_GENDER :: M CC PASSAGE :: C1 (2020-01-15) CC LOCATION :: United States / Alabama CC COLLECT_DATE :: 23-Dec-2019 CC Lineage :: A(H1N1)pdm09 CC RESIST_TO_OSELTAMIVIR :: Sensitive CC RESIST_TO_ZANAMVIR :: Sensitive CC SPECIMEN_ID :: M1912015589 ORIGINAL CC CHARACTERIZATION :: A/BRISBANE/02/2018-LIKE (H1N1)pdm09 CC SENDER_LAB :: ADPH Bureau of Clinical Laboratories CC SEQLAB_SAMPLE_ID :: 3026054470 CC EPI_SEQUENCE_ID :: EPI1684479 CC ##FluData-END## XX FH Key Location/Qualifiers FH FT source 1..865 FT /organism="Influenza A virus" FT /segment="8" FT /host="Homo sapiens" FT /strain="A/Alabama/27/2019" FT /serotype="H1N1" FT /mol_type="viral cRNA" FT /country="USA:Alabama" FT /collection_date="23-Dec-2019" FT /db_xref="taxon:11320" FT gene 15..852 FT /gene="NEP" FT /gene_synonym="NS2" FT CDS join(15..44,517..852) FT /codon_start=1 FT /gene="NEP" FT /gene_synonym="NS2" FT /product="nuclear export protein" FT /note="nonstructural protein 2" FT /protein_id="QIJ23656.1" FT /translation="MESNTMSSFQDILMRMSKMQLGSSSEDLSGMVTRFESLKIYRDSL FT GEAVMRMGDLHYLQSRNEKWREQLGQKFEEIRWLIEEIRHRLKTTENSFEQITFMQALQ FT LLLEVEQEIRAFSFQLI" FT gene 15..674 FT /gene="NS1" FT CDS 15..674 FT /codon_start=1 FT /gene="NS1" FT /product="nonstructural protein 1" FT /protein_id="QIJ23655.1" FT /translation="MESNTMSSFQVDCFLWHIRKRFADNGLGDAPFLDRLRRDQKSLKG FT RGNTLGLDIKTATLVGKQIVEWILKEESSETLRMTIASVPTSRYISDMTLEEMSRDWFM FT LMPRQKMIGPLCVRLDQAVMDKNIVLEANFSVIFNRLETLILLRAFTEEGAIVGEISPL FT PSLPGHTYEDVKNAVGVLIGGLEWNGNTVRVSENIQRFAWRSCDENGRPSLPPEQK" XX SQ Sequence 865 BP; 279 A; 165 C; 206 G; 215 T; 0 other; gtgacaaaaa cataatggaa tccaacacca tgtcaagctt tcaggtagac tgttttcttt 60 ggcatattcg caagcgattt gcagacaatg gattgggtga tgccccattc cttgatcggc 120 tacgccgaga tcaaaagtcc ttaaaaggaa gaggcaacac ccttggcctc gacatcaaaa 180 cagccactct tgttgggaaa caaattgtgg aatggatttt gaaagaggaa tccagcgaga 240 cacttagaat gacaattgca tctgtaccta cttcgcgtta catttctgac atgaccctcg 300 aggaaatgtc acgagactgg ttcatgctta tgcctaggca aaagatgata ggccctcttt 360 gcgtgcgatt ggaccaggcg gtcatggata agaacatagt actggaagca aacttcagtg 420 taatcttcaa ccgattagag accttgatac tactaagggc tttcactgag gagggagcaa 480 tagttggaga aatttcacca ttaccttctc ttccaggaca tacttatgag gatgtcaaaa 540 atgcagttgg ggtcctcatc ggaggacttg agtggaatgg taacacggtt cgagtctctg 600 aaaatataca gagattcgct tggagaagct gtgatgagaa tgggagacct tcactacctc 660 cagagcagaa atgagaagtg gcgggaacaa ttgggacaga aatttgagga aataaggtgg 720 ttaattgaag aaatacgaca caggttgaaa acgacagaga atagtttcga acaaataaca 780 tttatgcaag ccttacaact actgcttgaa gtagagcaag agataagagc tttctcgttt 840 cagcttattt aatgataaaa aacac 865 // ID MT167174; SV 1; linear; viral cRNA; STD; VRL; 2316 BP. XX AC MT167174; XX PR Project:PRJNA37813; XX DT 17-MAR-2020 (Rel. 144, Created) DT 17-MAR-2020 (Rel. 144, Last updated, Version 1) XX DE Influenza A virus (A/Alabama/27/2019(H1N1)) segment 1 polymerase PB2 (PB2) DE gene, complete cds. XX KW . XX OS Influenza A virus OC Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Insthoviricetes; OC Articulavirales; Orthomyxoviridae; Alphainfluenzavirus. XX RN [1] RP 1-2316 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT "Influenza Sequencing Activity group"; RL Unpublished. XX RN [2] RP 1-2316 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT ; RL Submitted (09-MAR-2020) to the INSDC. RL WHO Collaborating Center for Surveillance, Epidemiology and Control of RL Influenza, Influenza Division, Centers for Disease Control and Prevention, RL 1600 Clifton Road, N.E., Atlanta, GA 30333, USA XX DR MD5; b01526e86ad8bff56e62de70ae841a37. XX CC ##FluData-START## CC EPI_ISOLATE_ID :: EPI_ISL_409454 CC NAME :: A/Alabama/27/2019 CC TYPE :: H1N1 CC Segment_name :: PB2 CC HOST_GENDER :: M CC PASSAGE :: Original CC LOCATION :: United States / Alabama CC COLLECT_DATE :: 23-Dec-2019 CC Lineage :: A(H1N1)pdm09 CC SPECIMEN_ID :: M1912015589 ORIGINAL CC SENDER_LAB :: ADPH Bureau of Clinical Laboratories CC SEQLAB_SAMPLE_ID :: 3026054470 CC EPI_SEQUENCE_ID :: EPI1686364 CC ##FluData-END## XX FH Key Location/Qualifiers FH FT source 1..2316 FT /organism="Influenza A virus" FT /segment="1" FT /host="Homo sapiens" FT /strain="A/Alabama/27/2019" FT /serotype="H1N1" FT /mol_type="viral cRNA" FT /country="USA:Alabama" FT /collection_date="23-Dec-2019" FT /db_xref="taxon:11320" FT gene 16..2295 FT /gene="PB2" FT CDS 16..2295 FT /codon_start=1 FT /gene="PB2" FT /product="polymerase PB2" FT /protein_id="QIJ23657.1" FT /translation="MERIKELRDLMSQSRTREILTKTTVDHMAIIKKYTSGRQEKNPAL FT RMKWMMAMKYPITADKRIMDIIPERNEQGQTLWSKTNDAGSDRVMVSPLAVTWWNRNGP FT TTSTVHYPKVYKTYFEKVERLKHGTFGPVHFRNQVKIRRRVDTNPGHADLSAKEAQDVI FT MEVVFPNEVGARILTSESQLAITKEKKEELQNCKIAPLMVAYMLERELVRKTRFLPVAG FT GTGSVYIEVLHLTQGTCWEQMYTPGGEVRNDDVDQSLIIAARNIVRRAAVSADPLASLL FT EMCHSTQIGGVKMVDILKQNPTEEQAVDICKAAIGLRISSSFSFGGFTFKRTSGSSVKK FT EEEMLTGNLQTLKLRVHEGYEEFTMVGRRATAILRKATRRLIQLIVSGRDEQSIAXAII FT VAMVFSQEDCMIKAVRGDLNFVNRANQRLNPMHQLLRHFQKDAKVLFQNWGIETIDNVM FT GMIGILPDMTPSTEMSLRGIRVSKMGVDEYSSTERVVVSIDRFLRVRDQRGNVLLSPEE FT VSETQGTEKLTITYSSSMMWEINGPESVLVNTYQWIIRNWEIVKIQWSQDPTMLYNKME FT FEPFQSLVPKATRSRYSGFVRTLFQQMRDVLGTFDTVQIIKLLPFAAAPPEQSRMQFSS FT LTVNVRGSGLRILVRGNSPVFNYNKATKRLTVLGKDAGALTEDPDEGTSGVESAVLRGF FT LILGKEDKRYGPALSINELSNLAKGEKANVLIGQGDIVLVMKRKRDSSILTDSQTATKR FT IRMAIN" XX SQ Sequence 2316 BP; 794 A; 440 C; 582 G; 499 T; 1 other; tcaaatatat tcaatatgga gagaataaaa gagctgagag atctaatgtc acagtcccgc 60 actcgcgaga tactcactaa gaccactgtg gaccatatgg ccatcatcaa aaagtacaca 120 tcgggaaggc aagagaagaa ccccgcactc agaatgaagt ggatgatggc aatgaaatac 180 ccaattacgg cagacaagag aataatggac ataatcccag agaggaatga acaaggacaa 240 accctctgga gcaaaacaaa cgatgctgga tcagaccgag tgatggtatc acctctggcc 300 gtaacatggt ggaatagaaa tggcccaaca acaagtacag ttcattaccc taaggtatat 360 aaaacttatt tcgaaaaggt cgaaaggttg aaacatggca ccttcggccc tgtccacttc 420 agaaatcaag tcaaaataag gaggagagtt gatacaaacc ctggccatgc agatctcagt 480 gccaaagaag cacaggatgt gattatggaa gttgttttcc caaatgaagt gggggcaaga 540 atactgacat cagagtcaca gctggcaata acaaaagaga agaaagaaga gctccagaat 600 tgtaaaattg ctcccttgat ggtggcgtac atgctagaaa gagaattggt ccgtaaaaca 660 aggtttctcc cggtagccgg tgggacaggc agtgtttata ttgaggtgtt acacttgacc 720 caagggacgt gctgggagca gatgtacact ccaggaggag aagtgagaaa tgatgatgtt 780 gaccaaagct tgattatcgc tgctagaaac atagtaagaa gagcagcagt gtcagcagac 840 ccattagcat ctctcttgga aatgtgccac agcacacaga ttggaggtgt gaagatggtg 900 gacatcctta aacagaatcc aactgaggag caagccgtag acatatgcaa ggcagcaata 960 gggttgagga tcagctcatc ttttagtttt ggtgggttca ctttcaaaag gacaagcgga 1020 tcatcagtca agaaagaaga agaaatgctg acgggcaacc tccaaacact gaaattaaga 1080 gtacatgaag ggtatgaaga attcacaatg gttgggagaa gagcaacagc tattctcaga 1140 aaggcaacca ggagattgat ccaattaata gtaagcggga gagacgagca gtcaatagct 1200 gragcaataa ttgtggccat ggtattctca caagaggatt gcatgatcaa agcagttagg 1260 ggcgatctga actttgtcaa tagggcaaac cagagactga atcccatgca ccaactcttg 1320 aggcatttcc aaaaagatgc aaaagtgctt ttccagaact ggggaattga aaccatcgac 1380 aatgtgatgg gaatgatcgg aatactgccc gacatgaccc caagcacgga gatgtcactg 1440 agaggaataa gagtcagcaa gatgggagta gatgaatact ccagcacgga gagagtggta 1500 gtgagtattg accgattttt gagggttaga gatcaaagag gaaacgtact attgtctccc 1560 gaagaggtca gtgaaacgca aggaactgag aagttgacaa taacttattc gtcatcaatg 1620 atgtgggaaa tcaacggccc tgagtcagtg ctagtcaaca cttatcaatg gataatcaga 1680 aactgggaaa ttgtgaaaat tcaatggtca caagacccca caatgttata caacaaaatg 1740 gaatttgaac catttcagtc tcttgtccct aaggcaacca gaagccggta cagtggattc 1800 gtaaggacac tgttccagca aatgagggat gtgcttggga catttgacac tgtccaaata 1860 ataaaacttc tcccctttgc tgctgctcca ccagaacaga gcaggatgca attttcttca 1920 ttgactgtga atgtgagagg atcagggtta aggatactgg taagaggcaa ttctccagta 1980 ttcaattaca acaaggcaac caaacgactt acggttcttg gaaaggatgc aggtgcattg 2040 actgaagatc cagatgaagg cacatctgga gtggagtctg ctgtcctgag aggattcctc 2100 attttaggca aagaagacaa gagatatggc ccagcattaa gcatcaatga actgagcaat 2160 cttgcaaaag gagagaaagc taatgtgcta attgggcagg gggacatagt gttggtaatg 2220 aaacgaaaac gggactctag catacttact gacagccaga cagcgaccaa aagaattcgg 2280 atggccatca attagtgtcg aattgtttaa aaacga 2316 // ID MT167175; SV 1; linear; viral cRNA; STD; VRL; 2316 BP. XX AC MT167175; XX PR Project:PRJNA37813; XX DT 17-MAR-2020 (Rel. 144, Created) DT 17-MAR-2020 (Rel. 144, Last updated, Version 1) XX DE Influenza A virus (A/Alabama/27/2019(H1N1)) segment 2 polymerase PB1 (PB1) DE gene, complete cds; and nonfunctional PB1-F2 protein (PB1-F2) gene, DE complete sequence. XX KW . XX OS Influenza A virus OC Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Insthoviricetes; OC Articulavirales; Orthomyxoviridae; Alphainfluenzavirus. XX RN [1] RP 1-2316 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT "Influenza Sequencing Activity group"; RL Unpublished. XX RN [2] RP 1-2316 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT ; RL Submitted (09-MAR-2020) to the INSDC. RL WHO Collaborating Center for Surveillance, Epidemiology and Control of RL Influenza, Influenza Division, Centers for Disease Control and Prevention, RL 1600 Clifton Road, N.E., Atlanta, GA 30333, USA XX DR MD5; 0c701581f4c0b3e7f442749c0e84dcc7. XX CC ##FluData-START## CC EPI_ISOLATE_ID :: EPI_ISL_409454 CC NAME :: A/Alabama/27/2019 CC TYPE :: H1N1 CC Segment_name :: PB1 CC HOST_GENDER :: M CC PASSAGE :: Original CC LOCATION :: United States / Alabama CC COLLECT_DATE :: 23-Dec-2019 CC Lineage :: A(H1N1)pdm09 CC SPECIMEN_ID :: M1912015589 ORIGINAL CC SENDER_LAB :: ADPH Bureau of Clinical Laboratories CC SEQLAB_SAMPLE_ID :: 3026054470 CC EPI_SEQUENCE_ID :: EPI1686365 CC ##FluData-END## XX FH Key Location/Qualifiers FH FT source 1..2316 FT /organism="Influenza A virus" FT /segment="2" FT /host="Homo sapiens" FT /strain="A/Alabama/27/2019" FT /serotype="H1N1" FT /mol_type="viral cRNA" FT /country="USA:Alabama" FT /collection_date="23-Dec-2019" FT /db_xref="taxon:11320" FT gene 13..2286 FT /gene="PB1" FT CDS 13..2286 FT /codon_start=1 FT /gene="PB1" FT /product="polymerase PB1" FT /protein_id="QIJ23658.1" FT /translation="MDVNPTLLFLKIPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNR FT THQYSEKGKWTTNTETGAPQLNPVDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFE FT NSCLETMEVVQQTRVDKLTQGRQTYDWTLNRNQPAATALANTIEVFRSNDLTANESGRL FT IDFLKDVMESMNKEEIEITTHFQRKRRVRDNMTKKMVTQRTIGKKKQRLNKRGYLIRAL FT TLNTMTKDAERGKLKRRAIATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAK FT LANVVRKMMTNSQDTEISFTITGDNTKWNENQNPRMFLAMITYITRNQPEWFRNILSMA FT PIMFSNKMARLGKGYMFESKRMKIRTQIPAEMLASIDLKYFNESTKKKIEKIRPLLMDG FT TASLSPGMMMGMFNMLSTVLGVSILNLGQKKYTKTTYWWDGLQSSDDFALIVNAPNHEG FT IQAGVDRFYRTCKLVGINMSKKKSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSGV FT NESADMSIGVTVIKNNMINNDLGPATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFEL FT KKLWDQTQSKVGLLVSDGGPNLYNIRNLHIPEVCLKWELMDDDYRGRLCNPLNPFVSHK FT EIDSVNNAVVMPAHGPAKSMEYDAVATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCN FT LFEKFFPSSSYRRPVGISSMVEAMVSRARIDARVDFESGRIKKEEFSEIMKICSTIEEL FT RRQK" FT gene 107..379 FT /gene="PB1-F2" FT misc_feature 107..379 FT /gene="PB1-F2" FT /note="nonfunctional PB1-F2 protein due to mutation" XX SQ Sequence 2316 BP; 830 A; 438 C; 520 G; 528 T; 0 other; caaaccattt gaatggatgt caatccgact ctacttttcc taaaaattcc agcacaaaat 60 gccataagca ccacattccc ttatactgga gatcctccat acagccatgg gacaggaaca 120 ggatacacca tggacacagt aaacagaaca catcaatact cagaaaaggg gaagtggaca 180 acaaacacag agactggtgc gccccagctc aacccggttg acggaccact acctgaagat 240 aatgaaccaa gtgggtatgc acaaacagac tgtgttctag aggcgatggc tttccttgaa 300 gaatcccatc caggaatatt tgagaattca tgccttgaaa caatggaagt tgttcaacaa 360 acaagggtag ataaactgac tcaaggtcgc cagacttatg attggacatt aaacagaaat 420 caaccggcag caactgcatt ggccaacacc atagaagttt tcaggtcgaa tgacctaaca 480 gctaacgagt caggaaggct aatagatttc ttaaaggatg tgatggaatc aatgaacaaa 540 gaggaaatag agataacaac ccactttcaa agaaaaagga gagtaagaga caacatgacc 600 aagaagatgg tcacgcaaag aacaatagga aagaagaaac agaggctgaa taagagaggc 660 tatctaataa gagcactgac attaaatacg atgaccaaag atgcagagag aggcaagtta 720 aaaagaaggg ctatcgcaac acctgggatg cagattagag gtttcgtata ctttgttgaa 780 actttagcta ggagcatttg cgaaaagctt gaacagtctg ggctcccagt aggaggcaat 840 gaaaagaagg ccaaattggc aaatgttgtg agaaagatga tgactaattc acaagataca 900 gagatctctt tcacaatcac tggggacaac actaaatgga atgaaaatca aaatcctcga 960 atgttcctgg cgatgattac atatatcacc agaaatcaac ccgagtggtt tagaaacatc 1020 ctgagcatgg cacccataat gttctcaaac aaaatggcaa gactaggaaa aggatacatg 1080 ttcgagagta aaagaatgaa gattcgaaca caaataccag cagaaatgct agcaagcatt 1140 gatctaaagt atttcaatga atcaacaaag aagaaaattg agaaaataag gcctctttta 1200 atggatggca cagcatcact gagtcctggg atgatgatgg gcatgttcaa catgctaagt 1260 acggtcttgg gagtctcgat actgaatctt ggacaaaaga aatacaccaa gacaacatac 1320 tggtgggatg ggctccaatc atctgacgat tttgctctca tagtgaatgc accaaaccat 1380 gaaggaatac aagcaggagt ggacagattc tacaggacct gcaagttagt gggaatcaac 1440 atgagcaaaa agaaatccta tataaataag acagggacat ttgaattcac aagctttttt 1500 tatcgctatg gatttgtggc taattttagc atggagctac ccagctttgg agtgtctgga 1560 gtaaatgaat cagctgacat gagtattgga gtaacagtaa taaagaacaa catgataaac 1620 aatgaccttg gacctgcaac ggctcagatg gctcttcaat tattcatcaa agactacaga 1680 tacacatata ggtgtcatag gggagacaca caaattcaga cgagaagatc atttgagttg 1740 aagaagctat gggatcaaac ccaatcaaag gtagggctat tagtatcaga tggaggacca 1800 aacttataca acatacggaa tcttcacatt cctgaagtct gcttaaaatg ggagctaatg 1860 gatgatgatt atcggggaag actttgtaac cccctgaatc cctttgtgag tcataaggag 1920 attgattctg taaacaatgc tgtggtaatg ccagcccatg gcccagccaa aagcatggaa 1980 tatgatgccg ttgctactac acattcctgg attcccaaga ggaatcgttc tattctcaac 2040 acaagccaaa ggggaattct tgaggatgaa cagatgtacc agaagtgttg caatttattc 2100 gagaaatttt tccctagcag ttcatatagg agaccggttg gaatttctag catggtggag 2160 gccatggtgt ctagggcccg gattgatgcc agagtcgact ttgagtctgg acggatcaag 2220 aaagaagagt tctctgagat catgaagatc tgttccacca ttgaagaact cagacggcaa 2280 aaataatgaa tttaacttgt ccttcatgaa aaaatg 2316 // ID MT167176; SV 1; linear; viral cRNA; STD; VRL; 2208 BP. XX AC MT167176; XX PR Project:PRJNA37813; XX DT 17-MAR-2020 (Rel. 144, Created) DT 17-MAR-2020 (Rel. 144, Last updated, Version 1) XX DE Influenza A virus (A/Alabama/27/2019(H1N1)) segment 3 polymerase PA (PA) DE and PA-X protein (PA-X) genes, complete cds. XX KW . XX OS Influenza A virus OC Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Insthoviricetes; OC Articulavirales; Orthomyxoviridae; Alphainfluenzavirus. XX RN [1] RP 1-2208 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT "Influenza Sequencing Activity group"; RL Unpublished. XX RN [2] RP 1-2208 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT ; RL Submitted (09-MAR-2020) to the INSDC. RL WHO Collaborating Center for Surveillance, Epidemiology and Control of RL Influenza, Influenza Division, Centers for Disease Control and Prevention, RL 1600 Clifton Road, N.E., Atlanta, GA 30333, USA XX DR MD5; cac4adcf917b20ac8f9aab555fef07f7. XX CC ##FluData-START## CC EPI_ISOLATE_ID :: EPI_ISL_409454 CC NAME :: A/Alabama/27/2019 CC TYPE :: H1N1 CC Segment_name :: PA CC HOST_GENDER :: M CC PASSAGE :: Original CC LOCATION :: United States / Alabama CC COLLECT_DATE :: 23-Dec-2019 CC Lineage :: A(H1N1)pdm09 CC SPECIMEN_ID :: M1912015589 ORIGINAL CC SENDER_LAB :: ADPH Bureau of Clinical Laboratories CC SEQLAB_SAMPLE_ID :: 3026054470 CC EPI_SEQUENCE_ID :: EPI1686363 CC ##FluData-END## XX FH Key Location/Qualifiers FH FT source 1..2208 FT /organism="Influenza A virus" FT /segment="3" FT /host="Homo sapiens" FT /strain="A/Alabama/27/2019" FT /serotype="H1N1" FT /mol_type="viral cRNA" FT /country="USA:Alabama" FT /collection_date="23-Dec-2019" FT /db_xref="taxon:11320" FT gene 13..2163 FT /gene="PA" FT CDS 13..2163 FT /codon_start=1 FT /gene="PA" FT /product="polymerase PA" FT /protein_id="QIJ23659.1" FT /translation="MEDFVRQCFNPMVVELAEKAMKEYGEDPKIETNKFAAICTHLEVC FT FMYSDLHFIDERGESIIVESGDPNALLKHRFEIIEGRDRIMAWTVVNSICNTTGIEKPK FT FLPDLYDYKENRFIEIGVTRREVHIYYLEKANKIKSEKTHIHIFSFTGEEMATKADYTL FT DEESRARIKTRLFTIRQEMASRSLWDSFRQSERGEETIEEKFEITGTMRKLADQSLPPN FT FSSLENFRAYVDGFEPNGCIEGKLSQMSKEVNAKIEPFLRTTPRPLRLPDGPLCHQRSK FT FLLMDALKLSIEDPSHEGEGIPLYDAIKCMKTFFGWKEPKIVKPHEKGVNPNYLMAWKQ FT VLAELQDIENEEKIPRTKNMKKTSQLKWALGENMAPEKVDFDDCKDVGDLKQYDSDEPE FT LRSLASWVQNEFNKACELTDSSWIELDEIGEDVAPIEYIASMRRNYFTAEVSHCRATEY FT IMKGVYINTALLNASCAAMDDFQLIPMISKCRTKEGRRKTNLYGFIIKGRSHLRNDTDV FT VNFVSMEFSLTDPRLEPHKWEKYCVLEIGDMLLRTAIGQVSRPMFLYVRTNGTSKIKMK FT WGMEMRRCLLQSLQQIESMIEAESSVKEKDMTKEFFENKSETWPIGESPRGVEEGSIGK FT VCRTLLAKSVFNSLYASPQLEGFSAESRKLLLIVQALRDNLEPGTFDLGGLYEAIEECL FT INDPWVLLNASWFNSFLTHALK" FT gene 13..712 FT /gene="PA-X" FT CDS join(13..582,584..712) FT /codon_start=1 FT /ribosomal_slippage FT /gene="PA-X" FT /product="PA-X protein" FT /protein_id="QIJ23660.1" FT /translation="MEDFVRQCFNPMVVELAEKAMKEYGEDPKIETNKFAAICTHLEVC FT FMYSDLHFIDERGESIIVESGDPNALLKHRFEIIEGRDRIMAWTVVNSICNTTGIEKPK FT FLPDLYDYKENRFIEIGVTRREVHIYYLEKANKIKSEKTHIHIFSFTGEEMATKADYTL FT DEESRARIKTRLFTIRQEMASRSLWDSFVSPKEAKKQLKKSLRLQELCASLPTKVSHQT FT SPVLKTSEPM" XX SQ Sequence 2208 BP; 745 A; 421 C; 517 G; 525 T; 0 other; tactgatcca aaatggaaga ctttgtgcga caatgcttca atccaatggt cgtcgagctt 60 gcggaaaagg caatgaaaga atatggggaa gaccccaaaa tcgaaactaa taaatttgct 120 gcaatttgca cacatttgga agtttgtttc atgtattcgg atttacattt cattgatgaa 180 cggggtgaat caataattgt agaatctggt gacccaaatg cactattgaa gcaccgattt 240 gagataattg aaggaagaga ccgaatcatg gcctggacag tggtgaacag tatatgtaac 300 acaacaggga tagagaagcc taaatttctt cctgatttgt atgattacaa agagaaccgg 360 ttcattgaaa ttggggtaac acggagagaa gtccacatat attacctaga gaaagccaac 420 aaaataaaat ctgagaagac acacattcac atcttttcat tcactggaga ggaaatggcc 480 accaaagcgg actacaccct tgacgaagag agcagagcaa gaatcaaaac taggcttttc 540 actataagac aagaaatggc cagtaggagt ctatgggatt cctttcgtca gtccgaaaga 600 ggcgaagaaa caattgaaga aaagtttgag attacaggaa ctatgcgcaa gcttgccgac 660 caaagtctcc caccaaactt ctccagtctt gaaaacttca gagcctatgt agatggattc 720 gagccgaacg gctgcattga gggcaagctt tcccaaatgt caaaagaagt gaacgccaaa 780 attgaaccat tcttgaggac gacaccacgc cccctcagat tacctgatgg acctctttgc 840 catcagcggt caaagttcct gctgatggat gctctgaaat taagcattga agacccgagt 900 cacgaggggg aaggaatacc actatatgat gcaatcaaat gcatgaagac attctttggc 960 tggaaagagc ctaaaatagt caaaccacat gagaaaggcg taaatcccaa ttacctcatg 1020 gcttggaagc aggtgctagc agagctacag gacattgaaa atgaagagaa aatcccaaga 1080 acaaagaaca tgaagaaaac aagccaattg aagtgggcac tcggtgaaaa tatggcacca 1140 gaaaaagtgg actttgatga ctgtaaagat gttggagacc ttaaacagta tgacagtgat 1200 gagccagagc tcagatctct agcaagctgg gtccaaaatg aattcaataa ggcatgtgaa 1260 ttgactgatt caagctggat agaacttgat gaaatagggg aagatgttgc cccgattgaa 1320 tatatagcaa gcatgaggag gaactatttt acagcagaag tgtcccactg cagggctact 1380 gaatacataa tgaagggagt gtacataaat acggccttgc tcaatgcatc ctgtgcagcc 1440 atggatgact ttcagctgat tccaatgata agcaaatgta ggaccaaaga aggaagacgg 1500 aaaacaaacc tgtatgggtt cattataaaa ggaaggtctc atttgagaaa tgatactgat 1560 gtagtgaact ttgtaagtat ggagttctca ctcactgatc caagattgga accacacaaa 1620 tgggaaaaat actgtgttct tgaaatagga gacatgctat tgaggactgc aataggccaa 1680 gtgtcgaggc ccatgttcct atatgtgaga accaatggaa cctccaagat caagatgaaa 1740 tggggcatgg aaatgaggcg ctgccttctt caatctcttc agcagattga gagcatgatt 1800 gaagccgagt cttctgtcaa agagaaagac atgaccaaag aattctttga aaacaaatcg 1860 gaaacatggc caatcggaga gtcacccagg ggagtggagg aaggctctat tggaaaagtg 1920 tgcagaacct tactggcaaa atctgtgttc aacagtctat atgcttctcc acaacttgag 1980 gggttttcgg ctgaatcaag aaaattgctt ctcattgttc aggcacttag ggacaacctg 2040 gaacctggaa cctttgatct tggggggcta tatgaagcaa tcgaggagtg cttgattaat 2100 gatccctggg ttttgcttaa tgcatcttgg ttcaactcct tcctcacaca tgcactgaag 2160 tagttgtagc aatgctacta tttgctatcc atattgtcca aaaaagta 2208 // ID MT167177; SV 1; linear; viral cRNA; STD; VRL; 1752 BP. XX AC MT167177; XX PR Project:PRJNA37813; XX DT 17-MAR-2020 (Rel. 144, Created) DT 17-MAR-2020 (Rel. 144, Last updated, Version 1) XX DE Influenza A virus (A/Alabama/27/2019(H1N1)) segment 4 hemagglutinin (HA) DE gene, complete cds. XX KW . XX OS Influenza A virus OC Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Insthoviricetes; OC Articulavirales; Orthomyxoviridae; Alphainfluenzavirus. XX RN [1] RP 1-1752 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT "Influenza Sequencing Activity group"; RL Unpublished. XX RN [2] RP 1-1752 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT ; RL Submitted (09-MAR-2020) to the INSDC. RL WHO Collaborating Center for Surveillance, Epidemiology and Control of RL Influenza, Influenza Division, Centers for Disease Control and Prevention, RL 1600 Clifton Road, N.E., Atlanta, GA 30333, USA XX DR MD5; f769993b1f9df8280a9dae9161dc84b2. XX CC ##FluData-START## CC EPI_ISOLATE_ID :: EPI_ISL_409454 CC NAME :: A/Alabama/27/2019 CC TYPE :: H1N1 CC Segment_name :: HA CC HOST_GENDER :: M CC PASSAGE :: Original CC LOCATION :: United States / Alabama CC COLLECT_DATE :: 23-Dec-2019 CC Lineage :: A(H1N1)pdm09 CC SPECIMEN_ID :: M1912015589 ORIGINAL CC SENDER_LAB :: ADPH Bureau of Clinical Laboratories CC SEQLAB_SAMPLE_ID :: 3026054470 CC EPI_SEQUENCE_ID :: EPI1686367 CC ##FluData-END## XX FH Key Location/Qualifiers FH FT source 1..1752 FT /organism="Influenza A virus" FT /segment="4" FT /host="Homo sapiens" FT /strain="A/Alabama/27/2019" FT /serotype="H1N1" FT /mol_type="viral cRNA" FT /country="USA:Alabama" FT /collection_date="23-Dec-2019" FT /db_xref="taxon:11320" FT gene 21..1721 FT /gene="HA" FT CDS 21..1721 FT /codon_start=1 FT /gene="HA" FT /product="hemagglutinin" FT /function="receptor binding and fusion protein" FT /protein_id="QIJ23661.1" FT /translation="MKAILVVLLYTFTTANADTLCIGYHANNSTDTVDTVLEKNVTVTH FT SVNLLEDKHNGKLCKLRGVAPLHLGKCNIAGWILGNPECDSLSTARSWSYIVETSNSDN FT GTCYPGDFINYEELREQLSSVSSFERFEIFPKANSWPNHDSNKGVTAACPHAGAKSFYK FT NLIWLVKKGNSYPKINQTYINDKGKEVLVLWGIHHPPTTADQQSLYQNADAYVFVGTSK FT YSKKFKPEIATRPKVRDQEGRMNYYWTLVEPGDKITFEATGNLVVPRYAFTMERNAGSG FT IIISDTPVHDCNTTCQTPEGAINTSLPFQNVHPITIGTCPKYVKSTKLRLATGLRNVPS FT IQSRGLFGAIAGFIEGGWTGMVDGWYGYHHQNEQGSGYAADLKSTQNAIDKITNKVNSV FT IEKMNTQFTAVGKEFNHLEKRMENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSN FT VKNLYEKVRNQLKNNAKEIGNGCFEFYHKCDNTCMESVKNGTYDYPKYSEEAKLSREKI FT DGVKLDSTRIYQILAIYSTVASSLVLVVSLGAISFWMCSNGSLQCRICI" FT sig_peptide 21..71 FT /gene="HA" FT mat_peptide 72..1052 FT /gene="HA" FT /product="HA1" FT mat_peptide 1053..1718 FT /gene="HA" FT /product="HA2" XX SQ Sequence 1752 BP; 630 A; 330 C; 381 G; 411 T; 0 other; ggaaaacaaa agcaacaaaa atgaaggcaa tactagtagt tctgctgtat acatttacaa 60 ccgcaaacgc agacacatta tgtataggtt atcatgcgaa caattcaaca gacactgtag 120 atacagtact agaaaagaat gtaacagtaa cacactctgt taatcttctg gaagacaagc 180 ataacggaaa actatgcaaa ctaagagggg tagccccatt gcatttgggt aaatgcaaca 240 ttgctggctg gatcctggga aatccagagt gtgactcact ctccacagca agatcatggt 300 cctacattgt ggaaacgtct aattcagaca atggaacatg ttacccagga gatttcatca 360 attatgagga gctaagagag caattgagct cagtgtcatc atttgaaagg tttgaaatat 420 tccccaaggc aaattcatgg cctaatcatg actcgaacaa aggtgtaacg gcagcatgtc 480 ctcacgctgg agcaaaaagc ttctacaaaa acttgatatg gctggttaaa aaaggaaatt 540 catacccaaa gatcaaccaa acctacatta atgataaagg gaaagaagtc ctcgtgctgt 600 ggggcattca tcatccacct actactgctg accaacaaag tctctatcag aatgcagatg 660 catatgtttt tgtggggaca tcaaaataca gcaagaagtt caagccggaa atagcaacaa 720 gacccaaagt gagggatcaa gaagggagaa tgaactatta ctggacacta gtagagccgg 780 gagacaaaat aacattcgaa gcaactggaa atctagtggt accgagatat gcattcacaa 840 tggaaagaaa tgctggatct ggtattatca tttcagatac accagtccac gactgcaata 900 caacttgtca gacccccgag ggtgctataa acaccagtct cccatttcag aatgtacatc 960 cgatcacaat tgggacatgt ccaaagtatg taaaaagcac aaaattgaga ctggccacag 1020 gattgaggaa tgtcccgtct attcaatcta gaggcctatt cggggccatt gccggcttca 1080 ttgaaggggg gtggacaggg atggtagatg gatggtatgg ttatcaccat caaaatgaac 1140 aggggtcagg atatgcagcc gatctgaaga gcacacaaaa tgccattgat aagattacta 1200 acaaagtaaa ttctgttatt gaaaagatga atacacagtt cacagcagtg ggtaaagagt 1260 tcaaccacct tgaaaaaaga atggaaaatc taaataaaaa agttgatgat ggtttcttgg 1320 acatttggac ttacaatgcc gaactgttgg ttctgctgga aaatgaaaga actttagact 1380 atcacgattc aaatgtgaag aacttgtatg aaaaagtaag aaaccagtta aaaaacaatg 1440 ccaaagaaat tggaaatggc tgctttgaat tttaccacaa atgcgataac acatgcatgg 1500 aaagtgtcaa gaatgggact tacgactacc caaaatactc agaggaagca aaactaagca 1560 gagaaaaaat agatggagta aagctggact caacaaggat ctaccagatt ttggcgatct 1620 attcaactgt cgccagttca ttggtactgg tagtctccct gggggcaatc agcttctgga 1680 tgtgctctaa tgggtctcta cagtgtagaa tatgtattta acattaggat ttcagaatca 1740 tgagaaaaac ac 1752 // ID MT167178; SV 1; linear; viral cRNA; STD; VRL; 1540 BP. XX AC MT167178; XX PR Project:PRJNA37813; XX DT 17-MAR-2020 (Rel. 144, Created) DT 17-MAR-2020 (Rel. 144, Last updated, Version 1) XX DE Influenza A virus (A/Alabama/27/2019(H1N1)) segment 5 nucleocapsid protein DE (NP) gene, complete cds. XX KW . XX OS Influenza A virus OC Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Insthoviricetes; OC Articulavirales; Orthomyxoviridae; Alphainfluenzavirus. XX RN [1] RP 1-1540 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT "Influenza Sequencing Activity group"; RL Unpublished. XX RN [2] RP 1-1540 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT ; RL Submitted (09-MAR-2020) to the INSDC. RL WHO Collaborating Center for Surveillance, Epidemiology and Control of RL Influenza, Influenza Division, Centers for Disease Control and Prevention, RL 1600 Clifton Road, N.E., Atlanta, GA 30333, USA XX DR MD5; 82ed2582a65ead49f90ecf9aadd6b9b2. XX CC ##FluData-START## CC EPI_ISOLATE_ID :: EPI_ISL_409454 CC NAME :: A/Alabama/27/2019 CC TYPE :: H1N1 CC Segment_name :: NP CC HOST_GENDER :: M CC PASSAGE :: Original CC LOCATION :: United States / Alabama CC COLLECT_DATE :: 23-Dec-2019 CC Lineage :: A(H1N1)pdm09 CC SPECIMEN_ID :: M1912015589 ORIGINAL CC SENDER_LAB :: ADPH Bureau of Clinical Laboratories CC SEQLAB_SAMPLE_ID :: 3026054470 CC EPI_SEQUENCE_ID :: EPI1686360 CC ##FluData-END## XX FH Key Location/Qualifiers FH FT source 1..1540 FT /organism="Influenza A virus" FT /segment="5" FT /host="Homo sapiens" FT /strain="A/Alabama/27/2019" FT /serotype="H1N1" FT /mol_type="viral cRNA" FT /country="USA:Alabama" FT /collection_date="23-Dec-2019" FT /db_xref="taxon:11320" FT gene 34..1530 FT /gene="NP" FT CDS 34..1530 FT /codon_start=1 FT /gene="NP" FT /product="nucleocapsid protein" FT /protein_id="QIJ23662.1" FT /translation="MASQGTKRSYEQMETGGERQDTTEIRASVGRMIGGIGRFYIQMCT FT ELKLSDYDGRLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRIDGKW FT TRELILYDKEEIRRVWRQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRM FT CSLMQGSTLPRRSGAAGAAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTRVAYERM FT CNILKGKFQTAAQRAMMDQVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVY FT GLAVASGHDFEREGYSLVGIDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFED FT LRVSSFIRGKKVIPRGKLSTRGVQIASNENVETMDSNTLELRSRYWAIRTRSGGNTNQQ FT KASAGQISVQPTFSVQRNLPFERATVMAAFSGNNEGRTSDMRTEVIRMMESAKPEDLSF FT QGRGVFELSDEKATNPIVPSFDMSNEGSYFFGDNAEEYDN" XX SQ Sequence 1540 BP; 521 A; 297 C; 397 G; 325 T; 0 other; gtagataatc actcaatgag tgacatcgaa gccatggcgt ctcaaggcac caaacgatca 60 tatgaacaaa tggagactgg tggggagcgc caggatacca cagaaatcag agcatctgtt 120 ggaagaatga ttggtggaat cgggagattc tacatccaaa tgtgcactga attaaaactc 180 agtgattatg atggacgact aatccagaat agcataacaa tagagaggat ggtgctttct 240 gcttttgatg agagaagaaa taaataccta gaagagcatc cgagtgctgg gaaggaccct 300 aagaaaacag gaggacccat ctatagaaga atagacggaa aatggacgag agaactcatc 360 ctttatgaca aagaagaaat aaggagagtt tggcgccaag caaacaatgg cgaagatgca 420 acagcaggtc ttactcatat catgatttgg cattccaatc tgaatgatgc cacataccag 480 aggacaagag cacttgttcg cactggaatg gatcccagaa tgtgctctct aatgcaaggc 540 tcaacacttc ccaggaggtc tggtgccgca ggtgctgcag taaaaggagt tggaacaata 600 gctatggagt taatcagaat gataaaacgt ggaatcaatg accgaaattt ctggaggggt 660 gaaaatggac gaaggacaag agttgcttat gaaagaatgt gcaatatcct caaaggaaaa 720 tttcaaacag ctgcccagag ggcaatgatg gatcaagtaa gagaaagtcg aaacccagga 780 aacgcagaga ttgaagacct cattttcctg gcacggtcag cactcattct gagaggatca 840 gttgcacata aatcctgtct gcctgcttgt gtgtatgggc ttgcagtagc aagtggccat 900 gactttgaaa gggaagggta ctcactggtc gggatagacc cattcaaatt actccaaaac 960 agtcaagtgg tcagtctgat gagaccaaat gaaaatccag ctcacaagag tcaattggta 1020 tggatggcat gccactctgc tgcatttgaa gatttaagag tatcaagttt cataagagga 1080 aagaaagtga tcccaagagg aaagctttcc actagagggg ttcagattgc ttcaaatgag 1140 aatgtggaaa ccatggactc caataccctg gaactaagaa gcagatactg ggccataaga 1200 accaggagtg gaggaaatac caatcaacag aaggcatccg caggccagat cagtgtgcag 1260 cctacattct cagtgcagcg aaatctccct ttcgaaagag caaccgttat ggcagcattc 1320 agcgggaaca atgaaggacg gacatccgac atgcgaacag aagttataag aatgatggaa 1380 agtgcaaagc cagaggattt gtccttccag gggcggggag tcttcgagct ctcggacgaa 1440 aaggcaacga acccgatcgt gccttccttt gacatgagta atgaagggtc ttatttcttc 1500 ggagacaatg cagaggagta tgacaattga agaaaaatac 1540 // ID MT167179; SV 1; linear; viral cRNA; STD; VRL; 1433 BP. XX AC MT167179; XX PR Project:PRJNA37813; XX DT 17-MAR-2020 (Rel. 144, Created) DT 17-MAR-2020 (Rel. 144, Last updated, Version 1) XX DE Influenza A virus (A/Alabama/27/2019(H1N1)) segment 6 neuraminidase (NA) DE gene, complete cds. XX KW . XX OS Influenza A virus OC Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Insthoviricetes; OC Articulavirales; Orthomyxoviridae; Alphainfluenzavirus. XX RN [1] RP 1-1433 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT "Influenza Sequencing Activity group"; RL Unpublished. XX RN [2] RP 1-1433 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT ; RL Submitted (09-MAR-2020) to the INSDC. RL WHO Collaborating Center for Surveillance, Epidemiology and Control of RL Influenza, Influenza Division, Centers for Disease Control and Prevention, RL 1600 Clifton Road, N.E., Atlanta, GA 30333, USA XX DR MD5; 3e347025efdb51790396f18ea0f7d758. XX CC ##FluData-START## CC EPI_ISOLATE_ID :: EPI_ISL_409454 CC NAME :: A/Alabama/27/2019 CC TYPE :: H1N1 CC Segment_name :: NA CC HOST_GENDER :: M CC PASSAGE :: Original CC LOCATION :: United States / Alabama CC COLLECT_DATE :: 23-Dec-2019 CC Lineage :: A(H1N1)pdm09 CC SPECIMEN_ID :: M1912015589 ORIGINAL CC SENDER_LAB :: ADPH Bureau of Clinical Laboratories CC SEQLAB_SAMPLE_ID :: 3026054470 CC EPI_SEQUENCE_ID :: EPI1686366 CC ##FluData-END## XX FH Key Location/Qualifiers FH FT source 1..1433 FT /organism="Influenza A virus" FT /segment="6" FT /host="Homo sapiens" FT /strain="A/Alabama/27/2019" FT /serotype="H1N1" FT /mol_type="viral cRNA" FT /country="USA:Alabama" FT /collection_date="23-Dec-2019" FT /db_xref="taxon:11320" FT gene 9..1418 FT /gene="NA" FT CDS 9..1418 FT /codon_start=1 FT /gene="NA" FT /product="neuraminidase" FT /protein_id="QIJ23663.1" FT /translation="MNPNQKIITIGSICMTIGMANLILQIGNIISIWVSHSIQIGNQSQ FT IETCNQSVITYENNTWVNQTYVNISNTNFAARQSVASVKLAGNSSLCPVSGWAIYSKDN FT SVRIGSKGDVFVIREPFISCSPLECRTFFLTQGALLNDKHSNGTIKDRSPYRTLMSCPI FT GEVPSPYNSRFESVAWSASACHDGINWLTIGISGPDSGAVAVLKYNGIITDTIKSWRNN FT ILRTQESECACVNGSCFTIMTDGPSDGQASYKIFRIEKGKIIKSVEMKAPNYHYEECSC FT YPDSSEVTCVCRDNWHGSNRPWVSFNQNLEYQIGYICSGVLGDNPRPNDKTGSCGPVSS FT NGANGVKGFSFKYGNGVWIGRTKSISSRKGFEMIWDPNGWTGTDNKFSIKQDIVGINEW FT SGYSGSFVQHPELTGLDCIRPCFWVELIRGRPEENTIWTSGSSISFCGVDSDTVGWSWP FT DGAELPFTIDK" XX SQ Sequence 1433 BP; 459 A; 263 C; 337 G; 374 T; 0 other; agtttaaaat gaatccaaac caaaagataa taaccattgg ttcgatctgt atgacaattg 60 gaatggctaa cttaatatta caaattggaa acataatctc aatatgggtt agccactcaa 120 ttcaaattgg aaatcaaagc cagattgaaa catgcaatca aagcgtcatt acttatgaga 180 acaacacttg ggtaaatcag acatatgtta acatcagcaa caccaacttt gctgctagac 240 agtcagtggc ttccgtgaaa ttagcgggca attcctctct ctgccctgtt agtggatggg 300 ctatatacag taaagacaac agtgtaagaa tcggctccaa gggggatgtg tttgtcataa 360 gggaaccatt catatcatgc tctcccttgg aatgcagaac cttcttcttg actcaagggg 420 ctttgctaaa tgacaaacat tccaatggaa ccattaaaga caggagccca tatcgaaccc 480 taatgagctg tcctattggt gaagttccct ctccatacaa ctcaagattt gagtcagtcg 540 cttggtcagc aagtgcttgt catgatggca tcaattggct aacaattgga atttctggcc 600 cagacagtgg ggcagtggct gtgttaaaat acaatggcat aataacagac actatcaaga 660 gttggaggaa caatatattg agaacacaag agtctgaatg tgcatgtgta aatggttctt 720 gctttaccat aatgaccgat ggaccaagtg atggacaggc ctcatacaaa atcttcagaa 780 tagaaaaggg aaagataatc aaatcagttg aaatgaaagc ccctaattat cactatgagg 840 aatgctcctg ttaccctgat tctagtgaag tcacatgtgt gtgcagggat aactggcatg 900 gctcgaatcg accgtgggtg tctttcaacc agaatctgga atatcagata ggatacatat 960 gcagtggggt tctcggagac aatccacgcc ctaatgataa gacaggcagt tgcggtccag 1020 tatcgtctaa tggagcaaat ggagtaaaag gattttcatt caaatacggc aatggtgttt 1080 ggatagggag aactaagagc attagttcaa ggaaaggttt tgagatgatt tgggatccga 1140 atggatggac tgggactgac aataaattct caataaagca agatatcgta ggaataaatg 1200 agtggtcagg gtatagcggg agttttgttc agcatccaga actaacaggg ctggattgta 1260 taagaccttg cttctgggtt gaactaataa gaggacgacc cgaagagaac acaatctgga 1320 ctagcgggag cagcatatcc ttttgtggtg tagacagtga cactgtgggt tggtcttggc 1380 cagacggtgc tgagttgcca tttaccattg acaagtaatt tgttcaaaaa act 1433 // ID MT167180; SV 1; linear; viral cRNA; STD; VRL; 1002 BP. XX AC MT167180; XX PR Project:PRJNA37813; XX DT 17-MAR-2020 (Rel. 144, Created) DT 17-MAR-2020 (Rel. 144, Last updated, Version 1) XX DE Influenza A virus (A/Alabama/27/2019(H1N1)) segment 7 matrix protein 2 (M2) DE and matrix protein 1 (M1) genes, complete cds. XX KW . XX OS Influenza A virus OC Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Insthoviricetes; OC Articulavirales; Orthomyxoviridae; Alphainfluenzavirus. XX RN [1] RP 1-1002 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT "Influenza Sequencing Activity group"; RL Unpublished. XX RN [2] RP 1-1002 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT ; RL Submitted (09-MAR-2020) to the INSDC. RL WHO Collaborating Center for Surveillance, Epidemiology and Control of RL Influenza, Influenza Division, Centers for Disease Control and Prevention, RL 1600 Clifton Road, N.E., Atlanta, GA 30333, USA XX DR MD5; 371a766ece0fb40c7918dedee68da1b8. XX CC ##FluData-START## CC EPI_ISOLATE_ID :: EPI_ISL_409454 CC NAME :: A/Alabama/27/2019 CC TYPE :: H1N1 CC Segment_name :: M CC HOST_GENDER :: M CC PASSAGE :: Original CC LOCATION :: United States / Alabama CC COLLECT_DATE :: 23-Dec-2019 CC Lineage :: A(H1N1)pdm09 CC SPECIMEN_ID :: M1912015589 ORIGINAL CC SENDER_LAB :: ADPH Bureau of Clinical Laboratories CC SEQLAB_SAMPLE_ID :: 3026054470 CC EPI_SEQUENCE_ID :: EPI1686362 CC ##FluData-END## XX FH Key Location/Qualifiers FH FT source 1..1002 FT /organism="Influenza A virus" FT /segment="7" FT /host="Homo sapiens" FT /strain="A/Alabama/27/2019" FT /serotype="H1N1" FT /mol_type="viral cRNA" FT /country="USA:Alabama" FT /collection_date="23-Dec-2019" FT /db_xref="taxon:11320" FT gene 14..995 FT /gene="M2" FT CDS join(14..39,728..995) FT /codon_start=1 FT /gene="M2" FT /product="matrix protein 2" FT /protein_id="QIJ23665.1" FT /translation="MSLLTEVETPTRSGWECRCSGSSDPLVIAANIIGILHLILWITDR FT LFFKCIYRRFKYGLKRGPSTEGVPESMREEYQQEQQSAVDVDDGHFVNIELE" FT gene 14..772 FT /gene="M1" FT CDS 14..772 FT /codon_start=1 FT /gene="M1" FT /product="matrix protein 1" FT /protein_id="QIJ23664.1" FT /translation="MSLLTEVETYVLSIIPSGPLKAEIAQRLESVFAGKNTDLEALMEW FT LKTRPILSPLTKGILGFVFTLTVPSERGLQRRRFIQNALNGNGDPNNMDRAVKLYKKLK FT REITFHGAKEVSLSYSTGALASCMGLIYNRMGTVTTEAAFGLVCATCEQIADSQHRSHR FT QMATTTNPLIRHENRMVLASTTAKAMEQVAGSSEQAAEAMEVANKTRQMVHAMRTIGTH FT PSSSAGLRDDLLENLQAYQKRMGVQMQRFK" XX SQ Sequence 1002 BP; 297 A; 209 C; 257 G; 239 T; 0 other; tagatgttta aagatgagtc ttctaaccga ggtcgaaacg tatgttcttt ctatcatccc 60 atcaggcccc ctcaaagccg agatcgcaca gagactggaa agtgtctttg caggaaagaa 120 cacagatctt gaggctctca tggaatggct aaagacaaga ccaatcttgt cacctctgac 180 taagggaatt ttaggatttg tgttcacgct caccgtgccc agtgagcgag gactgcagcg 240 tagacgcttt atccaaaatg ccctaaatgg aaatggggac ccgaacaaca tggatagagc 300 agttaaacta tacaagaagc tcaaaagaga aataacgttc catggggcca aggaggtgtc 360 actaagctat tcaactggtg cacttgcaag ttgcatgggc ctcatataca acaggatggg 420 aacagtgacc acagaagctg ctttcggtct agtttgtgcc acttgtgaac agattgctga 480 ttcacagcat cggtctcaca gacaaatggc tactaccaca aatccactaa tcaggcatga 540 aaacagaatg gtactggcta gcactacggc aaaggctatg gaacaggtgg ctggatcgag 600 tgaacaggca gcggaggcca tggaggttgc taataagact aggcagatgg tgcatgcaat 660 gagaactatt gggactcatc ctagctccag tgctggtctg agagatgacc ttcttgaaaa 720 tttgcaggcc taccagaagc ggatgggagt gcagatgcag cggttcaagt gatcctctcg 780 tcattgcagc aaacatcatt gggatcttgc acctgatatt gtggattact gatcgtcttt 840 ttttcaaatg catttatcgt cgctttaaat acggtctgaa aagagggcct tctacggaag 900 gagtgcctga gtccatgagg gaagaatatc aacaggagca gcagagtgct gtggatgttg 960 acgatggtca ttttgtcaac atagagctag agtaaaaaac ta 1002 // ID MT167181; SV 1; linear; viral cRNA; STD; VRL; 865 BP. XX AC MT167181; XX PR Project:PRJNA37813; XX DT 17-MAR-2020 (Rel. 144, Created) DT 17-MAR-2020 (Rel. 144, Last updated, Version 1) XX DE Influenza A virus (A/Alabama/27/2019(H1N1)) segment 8 nuclear export DE protein (NEP) and nonstructural protein 1 (NS1) genes, complete cds. XX KW . XX OS Influenza A virus OC Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Insthoviricetes; OC Articulavirales; Orthomyxoviridae; Alphainfluenzavirus. XX RN [1] RP 1-865 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT "Influenza Sequencing Activity group"; RL Unpublished. XX RN [2] RP 1-865 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT ; RL Submitted (09-MAR-2020) to the INSDC. RL WHO Collaborating Center for Surveillance, Epidemiology and Control of RL Influenza, Influenza Division, Centers for Disease Control and Prevention, RL 1600 Clifton Road, N.E., Atlanta, GA 30333, USA XX DR MD5; c49b4edb51a5c13280edaf68de0e05b2. XX CC ##FluData-START## CC EPI_ISOLATE_ID :: EPI_ISL_409454 CC NAME :: A/Alabama/27/2019 CC TYPE :: H1N1 CC Segment_name :: NS CC HOST_GENDER :: M CC PASSAGE :: Original CC LOCATION :: United States / Alabama CC COLLECT_DATE :: 23-Dec-2019 CC Lineage :: A(H1N1)pdm09 CC SPECIMEN_ID :: M1912015589 ORIGINAL CC SENDER_LAB :: ADPH Bureau of Clinical Laboratories CC SEQLAB_SAMPLE_ID :: 3026054470 CC EPI_SEQUENCE_ID :: EPI1686361 CC ##FluData-END## XX FH Key Location/Qualifiers FH FT source 1..865 FT /organism="Influenza A virus" FT /segment="8" FT /host="Homo sapiens" FT /strain="A/Alabama/27/2019" FT /serotype="H1N1" FT /mol_type="viral cRNA" FT /country="USA:Alabama" FT /collection_date="23-Dec-2019" FT /db_xref="taxon:11320" FT gene 15..852 FT /gene="NEP" FT /gene_synonym="NS2" FT CDS join(15..44,517..852) FT /codon_start=1 FT /gene="NEP" FT /gene_synonym="NS2" FT /product="nuclear export protein" FT /note="nonstructural protein 2" FT /protein_id="QIJ23667.1" FT /translation="MESNTMSSFQDILMRMSKMQLGSSSEDLSGMVTRFESLKIYRDSL FT GEAVMRMGDLHYLQSRNEKWREQLGQKFEEIRWLIEEIRHRLKTTENSFEQITFMQALQ FT LLLEVEQEIRAFSFQLI" FT gene 15..674 FT /gene="NS1" FT CDS 15..674 FT /codon_start=1 FT /gene="NS1" FT /product="nonstructural protein 1" FT /protein_id="QIJ23666.1" FT /translation="MESNTMSSFQVDCFLWHIRKRFADNGLGDAPFLDRLRRDQKSLKG FT RGNTLGLDIKTATLVGKQIVEWILKEESSETLRMTIASVPTSRYISDMTLEEMSRDWFM FT LMPRQKMIGPLCVRLDQAVMDKNIVLEANFSVIFNRLETLILLRAFTEEGAIVGEISPL FT PSLPGHTYEDVKNAVGVLIGGLEWNGNTVRVSENIQRFAWRSCDENGRPSLPPEQK" XX SQ Sequence 865 BP; 279 A; 165 C; 206 G; 215 T; 0 other; gtgacaaaaa cataatggaa tccaacacca tgtcaagctt tcaggtagac tgttttcttt 60 ggcatattcg caagcgattt gcagacaatg gattgggtga tgccccattc cttgatcggc 120 tacgccgaga tcaaaagtcc ttaaaaggaa gaggcaacac ccttggcctc gacatcaaaa 180 cagccactct tgttgggaaa caaattgtgg aatggatttt gaaagaggaa tccagcgaga 240 cacttagaat gacaattgca tctgtaccta cttcgcgtta catttctgac atgaccctcg 300 aggaaatgtc acgagactgg ttcatgctta tgcctaggca aaagatgata ggccctcttt 360 gcgtgcgatt ggaccaggcg gtcatggata agaacatagt actggaagca aacttcagtg 420 taatcttcaa ccgattagag accttgatac tactaagggc tttcactgag gagggagcaa 480 tagttggaga aatttcacca ttaccttctc ttccaggaca tacttatgag gatgtcaaaa 540 atgcagttgg ggtcctcatc ggaggacttg agtggaatgg taacacggtt cgagtctctg 600 aaaatataca gagattcgct tggagaagct gtgatgagaa tgggagacct tcactacctc 660 cagagcagaa atgagaagtg gcgggaacaa ttgggacaga aatttgagga aataaggtgg 720 ttaattgaag aaatacgaca caggttgaaa acgacagaga atagtttcga acaaataaca 780 tttatgcaag ccttacaact actgcttgaa gtagagcaag agataagagc tttctcgttt 840 cagcttattt aatgataaaa aacac 865 // ID MT167182; SV 1; linear; viral cRNA; STD; VRL; 2316 BP. XX AC MT167182; XX PR Project:PRJNA37813; XX DT 17-MAR-2020 (Rel. 144, Created) DT 17-MAR-2020 (Rel. 144, Last updated, Version 1) XX DE Influenza A virus (A/Alabama/28/2019(H1N1)) segment 1 polymerase PB2 (PB2) DE gene, complete cds. XX KW . XX OS Influenza A virus OC Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Insthoviricetes; OC Articulavirales; Orthomyxoviridae; Alphainfluenzavirus. XX RN [1] RP 1-2316 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT "Influenza Sequencing Activity group"; RL Unpublished. XX RN [2] RP 1-2316 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT ; RL Submitted (09-MAR-2020) to the INSDC. RL WHO Collaborating Center for Surveillance, Epidemiology and Control of RL Influenza, Influenza Division, Centers for Disease Control and Prevention, RL 1600 Clifton Road, N.E., Atlanta, GA 30333, USA XX DR MD5; e9d4eebea7c9e889876411cc6584c18a. XX CC ##FluData-START## CC EPI_ISOLATE_ID :: EPI_ISL_409205 CC NAME :: A/Alabama/28/2019 CC TYPE :: H1N1 CC Segment_name :: PB2 CC HOST_AGE :: 28 CC HOST_GENDER :: F CC PASSAGE :: C1 (2020-01-15) CC LOCATION :: United States / Alabama CC COLLECT_DATE :: 25-Dec-2019 CC Lineage :: A(H1N1)pdm09 CC RESIST_TO_OSELTAMIVIR :: Sensitive CC RESIST_TO_ZANAMVIR :: Sensitive CC SPECIMEN_ID :: M1912015590 ORIGINAL CC SENDER_LAB :: ADPH Bureau of Clinical Laboratories CC SEQLAB_SAMPLE_ID :: 3026054471 CC EPI_SEQUENCE_ID :: EPI1684490 CC ##FluData-END## XX FH Key Location/Qualifiers FH FT source 1..2316 FT /organism="Influenza A virus" FT /segment="1" FT /host="Homo sapiens" FT /strain="A/Alabama/28/2019" FT /serotype="H1N1" FT /mol_type="viral cRNA" FT /country="USA:Alabama" FT /collection_date="25-Dec-2019" FT /db_xref="taxon:11320" FT gene 16..2295 FT /gene="PB2" FT CDS 16..2295 FT /codon_start=1 FT /gene="PB2" FT /product="polymerase PB2" FT /protein_id="QIJ23668.1" FT /translation="MERIKELRDLMSQSRTREILTKTTVDHMAIIKKYTSGRQEKNPAL FT RMKWMMAMKYPITADKRIMDIIPERNEQGQTLWSKINDAGSDRVMVSPLAVTWWNRNGP FT TTSTVHYPKVYKTYFEKVERLKHGTFGPVHFRNQVKIRRRVDTNPGHADLSAKEAQDVI FT MEVVFPNEVGARILTSESQLAITKEKKEELQNCKIAPLMVAYMLERELVRKTRFLPVAG FT GTSSVYIEVLHLTQGTCWEQMYTPGGEVRNDDVDQSLIIAARNIVRRAAVSADPLASLL FT EMCHSTQIGGVKMVDILKQNPTEEQAVDICKAAIGLRISSSFSFGGFTFKRTSGSSVKK FT EEEMLTGNLQTLKLRVHEGYEEFTMVGRRATAILRKATRRLIQLIVSGRDEQSIAEAII FT VAMVFSQEDCMIKAVRGDLNFVNRANQRLNPMHQLLRHFQKDAKVLFQNWGIETIDNVM FT GMIGILPDMTPSTEMSLRGIRVSKMGVDEYSSTERVVVSIDRFLRVRDQRGNVLLSPEE FT VSETQGTEKLTITYSSSMMWEINGPESVLVNTYQWIIRNWEIVKIQWSQDPTMLYNKME FT FEPFQSLVPKATRSRYSGFVRTLFQQMRDVLGTFDTVQIIKLLPFAAAPPEQSRMQFSS FT LTVNVRGSGLRILVRGNSPVFNYNKATKRLTILGKDAGALTEDPDEGTSGVESAVLRGF FT LILGKEDKRYGPALSINELSNLAKGEKANVLIGQGDIVLVMKRKRDSSILTDSQTATKR FT IRMAIN" XX SQ Sequence 2316 BP; 792 A; 434 C; 585 G; 504 T; 1 other; tcaaatatat tcaatatgga gagaataaaa gagctgagag atctaatgtc gcagtcccgc 60 actcgcgaga tactcactaa gaccactgtg gaccatatgg ccatcatcaa aaagtacaca 120 tcgggaaggc aagagaagaa ccccgcgctc agaatgaagt ggatgatggc aatgaaatac 180 ccaattacgg cagacaagag aataatggac ataatcccag agaggaatga acaaggacaa 240 accctctgga gcaaaataaa cgatgctgga tcagaccgag tgatggtrtc acctctggca 300 gtaacatggt ggaataggaa tggtccaaca acaagtacag ttcattaccc taaggtatat 360 aaaacttatt tcgaaaaggt cgaaaggttg aaacatggta ccttcggccc tgtccacttc 420 agaaatcaag ttaaaataag gaggagagtt gatacaaacc ctggccatgc agatctcagt 480 gccaaggagg cacaggatgt gattatggaa gttgttttcc caaatgaagt gggggcaaga 540 atactgacat cagagtcaca gctggcaata acaaaagaga agaaagaaga gctccagaat 600 tgtaaaattg ctcccttgat ggtggcgtac atgctagaaa gagaattggt ccgtaaaaca 660 aggtttctcc cggtagccgg tgggacaagc agtgtttata ttgaggtgtt gcacttgacc 720 caagggacgt gctgggagca gatgtacact ccaggaggag aagtgagaaa tgatgatgtt 780 gaccaaagct tgattatcgc tgctagaaac atagtaagaa gagcagcagt gtcagcagac 840 ccattagcat ctctcttgga aatgtgccac agcacacaga ttggaggtgt gaagatggtg 900 gacatcctta aacagaatcc aactgaggag caagccgtag acatatgcaa ggcagcaata 960 gggttgagga tcagctcatc cttcagtttt ggtgggttca ctttcaaaag gacaagcgga 1020 tcatcagtca agaaagaaga agaaatgcta acgggcaacc tccaaacact gaaattaaga 1080 gtacatgaag ggtatgaaga attcacaatg gttgggagaa gagcaacagc tattctcaga 1140 aaggcaacca ggagattgat ccaattaata gtaagcggga gagacgagca gtcaatagct 1200 gaagcaataa ttgtggccat ggtattctca caagaggatt gcatgatcaa agcagttagg 1260 ggcgatctga actttgtcaa tagggcaaac cagagactga atcccatgca ccaactcttg 1320 aggcatttcc aaaaagatgc aaaagtgctt ttccagaact ggggaattga aaccatcgac 1380 aatgtgatgg gaatgatcgg aatactgccc gacatgaccc caagtacgga gatgtcactg 1440 agaggaataa gagtcagcaa gatgggagta gatgaatact ccagcacgga gagagtggta 1500 gtgagtattg accgattttt gagggttaga gatcaaagag gaaacgtact attgtctccc 1560 gaagaagtca gtgaaacgca aggaactgag aagttgacaa taacttattc gtcatcaatg 1620 atgtgggaga tcaacggccc tgagtcagtg ctagtcaaca cttatcaatg gataattaga 1680 aactgggaaa ttgtgaaaat tcaatggtca caagacccca caatgttata caacaaaatg 1740 gaatttgaac catttcagtc tcttgttcct aaggcaacca gaagccggta cagtggattc 1800 gtaaggacac tgttccagca aatgagggat gtgcttggga catttgacac tgtccaaata 1860 ataaaacttc tcccctttgc tgctgctcca ccagaacaga gcaggatgca attttcttca 1920 ttgactgtga atgtgagagg atcagggtta aggatactgg taagaggcaa ttctccagta 1980 ttcaattaca acaaggcaac caaacgactt acgattcttg gaaaggatgc aggtgcattg 2040 actgaagatc cagatgaagg cacatctggg gtggagtctg ctgtcctgag aggattcctc 2100 attttaggca aagaagacaa gagatatggc ccagcattaa gcatcaatga actgagcaat 2160 cttgcaaaag gagagaaagc taatgtgcta attgggcagg gggacatagt gttagtaatg 2220 aaacgaaaac gggactctag catacttact gacagccaga cagcgaccaa aagaattcgg 2280 atggccatca attagtgtcg aattgtttaa aaacga 2316 // ID MT167183; SV 1; linear; viral cRNA; STD; VRL; 2316 BP. XX AC MT167183; XX PR Project:PRJNA37813; XX DT 17-MAR-2020 (Rel. 144, Created) DT 17-MAR-2020 (Rel. 144, Last updated, Version 1) XX DE Influenza A virus (A/Alabama/28/2019(H1N1)) segment 2 polymerase PB1 (PB1) DE gene, complete cds; and nonfunctional PB1-F2 protein (PB1-F2) gene, DE complete sequence. XX KW . XX OS Influenza A virus OC Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Insthoviricetes; OC Articulavirales; Orthomyxoviridae; Alphainfluenzavirus. XX RN [1] RP 1-2316 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT "Influenza Sequencing Activity group"; RL Unpublished. XX RN [2] RP 1-2316 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT ; RL Submitted (09-MAR-2020) to the INSDC. RL WHO Collaborating Center for Surveillance, Epidemiology and Control of RL Influenza, Influenza Division, Centers for Disease Control and Prevention, RL 1600 Clifton Road, N.E., Atlanta, GA 30333, USA XX DR MD5; 7f7fe6b75be150eb6e19d23f858df207. XX CC ##FluData-START## CC EPI_ISOLATE_ID :: EPI_ISL_409205 CC NAME :: A/Alabama/28/2019 CC TYPE :: H1N1 CC Segment_name :: PB1 CC HOST_AGE :: 28 CC HOST_GENDER :: F CC PASSAGE :: C1 (2020-01-15) CC LOCATION :: United States / Alabama CC COLLECT_DATE :: 25-Dec-2019 CC Lineage :: A(H1N1)pdm09 CC RESIST_TO_OSELTAMIVIR :: Sensitive CC RESIST_TO_ZANAMVIR :: Sensitive CC SPECIMEN_ID :: M1912015590 ORIGINAL CC SENDER_LAB :: ADPH Bureau of Clinical Laboratories CC SEQLAB_SAMPLE_ID :: 3026054471 CC EPI_SEQUENCE_ID :: EPI1684491 CC ##FluData-END## XX FH Key Location/Qualifiers FH FT source 1..2316 FT /organism="Influenza A virus" FT /segment="2" FT /host="Homo sapiens" FT /strain="A/Alabama/28/2019" FT /serotype="H1N1" FT /mol_type="viral cRNA" FT /country="USA:Alabama" FT /collection_date="25-Dec-2019" FT /db_xref="taxon:11320" FT gene 13..2286 FT /gene="PB1" FT CDS 13..2286 FT /codon_start=1 FT /gene="PB1" FT /product="polymerase PB1" FT /protein_id="QIJ23669.1" FT /translation="MDVNPTLLFLKIPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNR FT THQYSEKGKWTTNTETGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFE FT NSCLETMEVVQQTRVDKLTQGRQTYDWTLNRNQPAATALANTIEVFRSNDLTANESGRL FT IDFLKDVMESMNKEEIEITTHFQRKRRVRDNMTKKMITQRTIGKKKQRLNKRGYLIRAL FT TLNTMTKDAERGKLKRRAIATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAK FT LANVVRKMMTNSQDTEISFTITGDNTKWNENQNPRMFLAMITYITRNQPEWFRNILSMA FT PIMFSNKMARLGKGYMFESKRMKIRTQIPAEMLASIDLKYFNESTRKKIEKIRPLLMDG FT TASLSPGMMMGMFNMLSTVLGVSILNLGQKKYTKTTYWWDGLQSSDDFALIVNAPNHEG FT IQAGVDRFYRTCKLVGINMSKKKSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSGV FT NESADMSIGVTVIKNNMINNDLGPATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFEL FT KKLWDQTQSKVGLLVSDGGPNLYNIRNLHIPEVCLKWELMDDDYRGRLCNPLNPFVSHK FT EIDSVNNAVVMPAHGPAKSMEYDAVATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCN FT LFEKFFPSSSYRRPVGISSMVEAMVSRARIDARVDFESGRIKKEEFSEIMKICSTIEEL FT RRQK" FT gene 107..379 FT /gene="PB1-F2" FT misc_feature 107..379 FT /gene="PB1-F2" FT /note="nonfunctional PB1-F2 protein due to mutation" XX SQ Sequence 2316 BP; 830 A; 436 C; 518 G; 532 T; 0 other; caaaccattt gaatggatgt caatccgact ctacttttcc taaaaattcc agcacaaaat 60 gccataagca ccacattccc ttatactgga gatcctccat acagccatgg aacaggaaca 120 ggatacacca tggacacagt aaacagaaca caccaatact cagaaaaggg gaagtggaca 180 acaaacacag agactggtgc accccagctc aacccgattg acggaccact acctgaagat 240 aatgaaccaa gtgggtatgc acaaacagac tgtgttctag aggctatggc tttccttgaa 300 gaatcccatc caggaatatt tgaaaattca tgccttgaaa caatggaagt tgttcaacaa 360 acaagggtag ataaactgac tcaaggtcgc cagacttatg attggacatt aaacagaaat 420 caaccggcag caactgcatt ggccaacacc atagaagttt tcagatcgaa tgacctaaca 480 gctaacgagt caggaaggct aatagatttc ttaaaggatg tgatggaatc aatgaacaaa 540 gaggaaatag agataacaac ccactttcaa agaaaaagga gagtaagaga caacatgacc 600 aagaagatga tcacgcaaag aacaataggg aagaaaaaac agagactgaa taagagaggc 660 tatctaataa gagcactgac attaaatacg atgaccaaag atgcagagag aggcaagtta 720 aaaagaaggg ctatcgcaac acctgggatg cagattagag gtttcgtata ctttgttgaa 780 actttagcta ggagcatttg cgaaaagctt gaacagtctg ggctcccagt agggggcaat 840 gaaaagaagg ccaaattggc aaatgttgtg agaaagatga tgactaattc acaagataca 900 gagatttctt tcacaatcac tggggacaac actaaatgga atgagaatca aaatcctcga 960 atgttcctag cgatgattac atatatcacc agaaatcaac ccgagtggtt tagaaacatc 1020 ctgagcatgg cacccataat gttctcaaat aaaatggcaa gactaggaaa agggtacatg 1080 ttcgagagta aaagaatgaa gattcgaaca caaataccag cagaaatgct agcaagcatt 1140 gatctaaagt atttcaatga atcgacaagg aagaaaattg agaagataag gcctctttta 1200 atggatggca cagcatcact gagtcctggg atgatgatgg gcatgttcaa catgctaagt 1260 actgtcttgg gagtctcgat actgaatctt ggacaaaaga aatacaccaa gacaacatac 1320 tggtgggatg ggctccaatc atccgacgat tttgctctca tagtgaatgc accaaatcat 1380 gaaggaatac aagcaggagt ggacagattc tacaggacct gcaaattagt gggaatcaac 1440 atgagcaaaa agaagtccta tataaataag acagggacat ttgaattcac aagctttttt 1500 tatcgctatg gatttgtggc taattttagc atggagctac ccagctttgg agtgtctgga 1560 gtaaatgaat cagctgacat gagtattgga gtaacagtga taaagaacaa catgataaac 1620 aatgaccttg gacctgcaac ggctcagatg gctcttcaat tgttcatcaa agactacaga 1680 tacacatata ggtgtcatag gggggataca caaattcaga cgagaagatc atttgagctg 1740 aagaagctat gggatcaaac ccaatcaaag gtagggctat tagtatcaga tggaggacca 1800 aacttataca acatacggaa tcttcacatt cctgaagtct gcttaaaatg ggagctaatg 1860 gatgatgatt atcggggaag actttgtaat cccctgaatc cctttgtgag tcataaggag 1920 attgattctg taaacaatgc tgtggtaatg ccagcccatg gcccagccaa aagcatggaa 1980 tatgatgccg tcgctactac acattcctgg attcccaaga ggaatcgttc tattctcaac 2040 acaagccaaa ggggaattct tgaggatgaa cagatgtacc agaagtgttg caatttattc 2100 gagaaatttt tccctagcag ttcatatagg agaccggttg gaatttctag catggtggag 2160 gccatggtgt ctagggcccg gattgatgcc agagtcgact ttgaatctgg acggattaag 2220 aaagaagagt tctctgagat catgaagatc tgttccacca ttgaagaact cagacggcaa 2280 aaataatgaa tttaacttgt ccttcatgaa aaaatg 2316 // ID MT167184; SV 1; linear; viral cRNA; STD; VRL; 2208 BP. XX AC MT167184; XX PR Project:PRJNA37813; XX DT 17-MAR-2020 (Rel. 144, Created) DT 17-MAR-2020 (Rel. 144, Last updated, Version 1) XX DE Influenza A virus (A/Alabama/28/2019(H1N1)) segment 3 polymerase PA (PA) DE and PA-X protein (PA-X) genes, complete cds. XX KW . XX OS Influenza A virus OC Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Insthoviricetes; OC Articulavirales; Orthomyxoviridae; Alphainfluenzavirus. XX RN [1] RP 1-2208 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT "Influenza Sequencing Activity group"; RL Unpublished. XX RN [2] RP 1-2208 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT ; RL Submitted (09-MAR-2020) to the INSDC. RL WHO Collaborating Center for Surveillance, Epidemiology and Control of RL Influenza, Influenza Division, Centers for Disease Control and Prevention, RL 1600 Clifton Road, N.E., Atlanta, GA 30333, USA XX DR MD5; 1d078fcff6f36d019ac51979d59dac2f. XX CC ##FluData-START## CC EPI_ISOLATE_ID :: EPI_ISL_409205 CC NAME :: A/Alabama/28/2019 CC TYPE :: H1N1 CC Segment_name :: PA CC HOST_AGE :: 28 CC HOST_GENDER :: F CC PASSAGE :: C1 (2020-01-15) CC LOCATION :: United States / Alabama CC COLLECT_DATE :: 25-Dec-2019 CC Lineage :: A(H1N1)pdm09 CC RESIST_TO_OSELTAMIVIR :: Sensitive CC RESIST_TO_ZANAMVIR :: Sensitive CC SPECIMEN_ID :: M1912015590 ORIGINAL CC SENDER_LAB :: ADPH Bureau of Clinical Laboratories CC SEQLAB_SAMPLE_ID :: 3026054471 CC EPI_SEQUENCE_ID :: EPI1684489 CC ##FluData-END## XX FH Key Location/Qualifiers FH FT source 1..2208 FT /organism="Influenza A virus" FT /segment="3" FT /host="Homo sapiens" FT /strain="A/Alabama/28/2019" FT /serotype="H1N1" FT /mol_type="viral cRNA" FT /country="USA:Alabama" FT /collection_date="25-Dec-2019" FT /db_xref="taxon:11320" FT gene 13..2163 FT /gene="PA" FT CDS 13..2163 FT /codon_start=1 FT /gene="PA" FT /product="polymerase PA" FT /protein_id="QIJ23670.1" FT /translation="MEDFVRQCFNPMIVELAEKAMKEYGEDPKIETNKFAAICTHLEVC FT FMYSDFHFIDERGESIIVESGDPNALLKHRFEIIEGRDRIMAWTVVNSICNTTGIEKPK FT LLPDLYDYKENRFIEIGVTRREVHIYYLEKANKIKSEKTHIHIFSFTGEEMATKADYTL FT DEESRARIKTRLFTIRQEMASRSLWDSFRQSERGEETIEEKFEITGTMRKLADQSLPPN FT FSSLENFRAYVDGFEPNGCIEGKLSQMSKEVNAKIEPFLRTTPRPLRLPDGPLCHQRSK FT FLLMDALKLSIEDPSHEGEGIPLYDAIKCMKTFFGWKEPKIVKPHEKGVNPNYLMAWKQ FT VLAELQDIENEEKIPRTKNMKKTSQLKWALGENMAPEKVDFDDCKDVGDLKQYDSDEPE FT PRSLASWVQNEFNKACELTDSSWIELDEIGEDVAPIEHIASMRRNYFTAEVSHCRATEY FT IMKGVYINTALLNASCAAMDDFQLIPMISKCRTKEGRRKTNLYGFIIKGRSHLRNDTDV FT VNFVSMEFSLTDPRLEPHKWEKYCVLEIGDMLLRTAIGQVSRPMFLYVRTNGTSKIKMK FT WGMEMRRCLLQSLQQIESMIEAESSVKEKDMTKEFFENKSETWPIGESPRGVEEGSIGK FT VCRTLLAKSVFNSLYASPQLEGFSAESRKLLLIVQALRDNLEPGTFDLGGLYEAIEECL FT INDPWVLLNASWFNSFLTHALK" FT gene 13..712 FT /gene="PA-X" FT CDS join(13..582,584..712) FT /codon_start=1 FT /ribosomal_slippage FT /gene="PA-X" FT /product="PA-X protein" FT /protein_id="QIJ23671.1" FT /translation="MEDFVRQCFNPMIVELAEKAMKEYGEDPKIETNKFAAICTHLEVC FT FMYSDFHFIDERGESIIVESGDPNALLKHRFEIIEGRDRIMAWTVVNSICNTTGIEKPK FT LLPDLYDYKENRFIEIGVTRREVHIYYLEKANKIKSEKTHIHIFSFTGEEMATKADYTL FT DEESRARIKTRLFTIRQEMASRSLWDSFVSPKEAKKQLKKSLKLQELCASLPTKVSHQT FT SPALKTSEPM" XX SQ Sequence 2208 BP; 744 A; 419 C; 515 G; 530 T; 0 other; tactgatcca aaatggaaga ctttgtgcga caatgcttca atccaatgat cgtcgagctt 60 gcggaaaagg caatgaaaga atatggggaa gaccccaaaa ttgaaactaa taagtttgct 120 gcaatttgca cacatttgga agtttgtttc atgtattcgg atttccattt cattgatgaa 180 cggggtgaat caataattgt agaatctggt gacccaaatg cactattgaa gcaccgattt 240 gagataattg aaggaagaga ccgaatcatg gcttggacag tggtgaacag tatatgtaac 300 acaacaggga tagagaagcc taaacttctt cctgatttgt atgattacaa agagaaccgg 360 ttcattgaaa ttggagtaac acggagagaa gttcacatat attacctaga gaaagccaac 420 aaaataaaat ctgaaaagac acacattcac atcttttcat tcactggaga ggagatggcc 480 accaaagcgg actacactct tgacgaagaa agcagagcaa gaatcaaaac taggcttttc 540 actataagac aagaaatggc cagtaggagt ctatgggatt cctttcgtca gtccgaaaga 600 ggcgaagaaa caattgaaga aaagtttgaa attacaggaa ctatgcgcaa gcttgccgac 660 caaagtctcc caccaaactt ctccagcctt gaaaacttca gagcctatgt agatggattc 720 gagccgaatg gctgcattga gggcaagctt tcccaaatgt caaaagaagt gaacgccaaa 780 attgaaccat tcttgaggac gacaccacgc cctctcagat tacctgatgg acctctttgc 840 catcagcggt caaagttcct gctgatggat gctctgaaat taagcattga agacccgagt 900 cacgaggggg aaggaatacc actatatgat gcaatcaaat gcatgaagac attctttggc 960 tggaaagagc ctaaaatagt caaaccacat gagaaaggcg taaatcccaa ttacctcatg 1020 gcttggaagc aggtgctagc agagctacag gacattgaaa atgaagagaa aatcccaagg 1080 acaaagaaca tgaagaaaac aagccaattg aagtgggcac tcggtgaaaa tatggcacct 1140 gaaaaagtgg actttgatga ctgtaaagat gttggagacc ttaaacagta tgacagtgat 1200 gagccagagc ccagatctct agcaagctgg gtccaaaatg aattcaataa ggcatgtgaa 1260 ttgactgatt caagctggat agaacttgat gaaataggag aagatgttgc cccaattgaa 1320 catatagcaa gcatgaggag gaactatttt acagcagaag tgtcccactg cagggctact 1380 gaatacataa tgaagggagt gtacataaat acggccttgc ttaatgcatc ctgtgcagcc 1440 atggatgact ttcagctgat tccaatgata agcaaatgta ggaccaaaga aggaagacgg 1500 aaaacaaacc tttatgggtt cattataaaa ggaaggtctc atttgagaaa tgatactgat 1560 gtggtgaact ttgtaagtat ggagttctca ctcactgatc caagactgga accacacaaa 1620 tgggaaaaat actgtgttct tgaaatagga gacatgctat tgaggactgc gataggtcaa 1680 gtgtcgaggc ccatgttcct atatgtgaga accaatggaa cctccaagat caagatgaaa 1740 tggggcatgg aaatgaggcg ctgccttctt caatctcttc aacagattga gagcatgatt 1800 gaagccgagt cttctgtcaa agagaaagac atgaccaagg aattctttga aaacaaatcg 1860 gaaacatggc caatcggaga gtcacccagg ggagtggagg aaggctctat tggaaaagtg 1920 tgcagaacct tactggcaaa atctgtgttc aacagtctat atgcttctcc acaacttgag 1980 gggttttcgg ctgaatcaag aaaattgctt ctcattgttc aggcacttag ggacaacctg 2040 gaacctggaa cctttgatct tggggggcta tatgaagcaa tcgaggagtg cttgattaat 2100 gatccctggg ttttgcttaa tgcatcttgg ttcaactcct tcctcacaca tgcactgaag 2160 tagttgtggc aatgctacta tttgctatcc atattgtcca aaaaagta 2208 // ID MT167185; SV 1; linear; viral cRNA; STD; VRL; 1752 BP. XX AC MT167185; XX PR Project:PRJNA37813; XX DT 17-MAR-2020 (Rel. 144, Created) DT 17-MAR-2020 (Rel. 144, Last updated, Version 1) XX DE Influenza A virus (A/Alabama/28/2019(H1N1)) segment 4 hemagglutinin (HA) DE gene, complete cds. XX KW . XX OS Influenza A virus OC Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Insthoviricetes; OC Articulavirales; Orthomyxoviridae; Alphainfluenzavirus. XX RN [1] RP 1-1752 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT "Influenza Sequencing Activity group"; RL Unpublished. XX RN [2] RP 1-1752 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT ; RL Submitted (09-MAR-2020) to the INSDC. RL WHO Collaborating Center for Surveillance, Epidemiology and Control of RL Influenza, Influenza Division, Centers for Disease Control and Prevention, RL 1600 Clifton Road, N.E., Atlanta, GA 30333, USA XX DR MD5; 13889976a21e1607330156efe93ebac9. XX CC ##FluData-START## CC EPI_ISOLATE_ID :: EPI_ISL_409205 CC NAME :: A/Alabama/28/2019 CC TYPE :: H1N1 CC Segment_name :: HA CC HOST_AGE :: 28 CC HOST_GENDER :: F CC PASSAGE :: C1 (2020-01-15) CC LOCATION :: United States / Alabama CC COLLECT_DATE :: 25-Dec-2019 CC Lineage :: A(H1N1)pdm09 CC RESIST_TO_OSELTAMIVIR :: Sensitive CC RESIST_TO_ZANAMVIR :: Sensitive CC SPECIMEN_ID :: M1912015590 ORIGINAL CC SENDER_LAB :: ADPH Bureau of Clinical Laboratories CC SEQLAB_SAMPLE_ID :: 3026054471 CC EPI_SEQUENCE_ID :: EPI1684493 CC ##FluData-END## XX FH Key Location/Qualifiers FH FT source 1..1752 FT /organism="Influenza A virus" FT /segment="4" FT /host="Homo sapiens" FT /strain="A/Alabama/28/2019" FT /serotype="H1N1" FT /mol_type="viral cRNA" FT /country="USA:Alabama" FT /collection_date="25-Dec-2019" FT /db_xref="taxon:11320" FT gene 21..1721 FT /gene="HA" FT CDS 21..1721 FT /codon_start=1 FT /gene="HA" FT /product="hemagglutinin" FT /function="receptor binding and fusion protein" FT /protein_id="QIJ23672.1" FT /translation="MKAILVVLLYTFTTANADTLCIGYHANNSTDTVDTVLEKNVTVTH FT SVNLLEDKHNGKLCKLRGVAPLHLGKCNIAGWILGNPECESLSTARSWSYIVETSNSDN FT GTCYPGDFINYEELREQLSSVSSFERFEIFPKTSSWPNHDSDKGVTAACPHAGAKSFYK FT NLIWLVKKGNSYPKLNQTYINDKGKEILVLWGIHHPPTIAAQESLYQNADAYVFVGTSR FT YSKKFKPEIATRPKVRDQEGRMNYYWTLVEPGDKITFEATGNLVVPRYAFTMERDAGSG FT IIISDTPVHDCNTTCQTPEGAINTSLPFQNVHPITIGKCPKYVKSTKLRLATGLRNVPS FT IQSRGLFGAIAGFIEGGWTGMVDGWYGYHHQNEQGSGYAADLKSTQNAIDKITNKVNSV FT IEKMNTQFTAVGKEFNHLEKRIENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSN FT VKNLYEKVRNQLKNNAKEIGNGCFEFYHKCDNTCMESVKNGTYDYPKYSEEAKLNREKI FT DGVKLESTRIYQILAIYSTVASSLVLVVSLGAISFWMCSNGSLQCRICI" FT sig_peptide 21..71 FT /gene="HA" FT mat_peptide 72..1052 FT /gene="HA" FT /product="HA1" FT mat_peptide 1053..1718 FT /gene="HA" FT /product="HA2" XX SQ Sequence 1752 BP; 631 A; 327 C; 384 G; 410 T; 0 other; ggaaaacaaa agcaacaaaa atgaaggcaa tactagtagt tctgctgtat acatttacaa 60 ccgcaaatgc agacacatta tgtataggtt atcatgcgaa caattcaaca gacactgtag 120 acacagtact agaaaagaat gtaacagtaa cacactctgt caatcttctg gaagacaagc 180 ataacggaaa actatgcaaa ctaagagggg tagccccatt gcatttgggt aaatgtaaca 240 ttgctggctg gatcctggga aatccagagt gtgaatcact ctccacagca agatcatggt 300 cctacattgt ggaaacatct aattcagaca atggaacgtg ttacccagga gatttcatca 360 attatgagga gctaagagag caattgagct cagtgtcatc atttgaaagg tttgaaatat 420 tccccaagac aagttcatgg cctaatcatg actcggacaa aggtgtaacg gcagcatgtc 480 ctcacgctgg agcaaaaagc ttctacaaaa acttgatatg gctggttaaa aaaggaaatt 540 catacccaaa gctcaaccaa acctacatta atgataaagg gaaagaaatc ctcgtgctgt 600 ggggcattca ccatccacct actattgctg cccaagaaag tctctatcag aatgcagatg 660 catatgtttt tgtggggaca tcaagataca gcaagaagtt caagccggaa atagcaacaa 720 gacccaaagt gagggatcaa gaagggagaa tgaactatta ctggacacta gtagaaccgg 780 gagacaaaat aacattcgaa gcaactggaa atctagtggt accgagatat gcattcacaa 840 tggaaagaga tgctggatct ggcattatca tttcagatac accagtccac gattgcaata 900 caacttgtca gacacccgag ggtgctataa acaccagcct tccatttcag aatgtacatc 960 cgattacaat tgggaaatgt ccaaagtatg taaaaagcac aaaattgaga ctggccacag 1020 gattgaggaa tgtcccgtct attcaatcta gaggcctatt cggggccatt gctggcttca 1080 ttgaaggggg gtggacaggg atggtagatg gatggtacgg ttatcaccat caaaatgagc 1140 aggggtcagg atatgcagcc gatctgaaga gcacacaaaa tgccattgat aagattacta 1200 acaaagtaaa ttctgttata gaaaagatga atacacagtt cacagcagtg ggtaaagagt 1260 tcaaccacct tgaaaaaaga atagagaatc taaataaaaa agttgatgat ggtttcctgg 1320 acatttggac ttacaatgcc gaactgttgg ttctactgga aaacgaaaga actttggact 1380 atcacgattc aaatgtgaag aacttgtatg aaaaagtaag aaaccagtta aaaaacaatg 1440 ccaaggaaat tggaaacggc tgctttgaat tttaccacaa atgcgacaac acatgcatgg 1500 aaagtgtcaa gaatgggact tatgactacc caaaatactc agaggaagca aaattaaaca 1560 gagaaaaaat agatggagta aagctggaat caacaaggat ctaccagatt ttggcgatct 1620 attcaactgt tgccagttca ttggtactgg tagtctccct gggggcaatc agcttctgga 1680 tgtgctctaa tgggtctcta cagtgtagaa tatgtattta acattaggat ttcagaatca 1740 tgagaaaaac ac 1752 // ID MT167186; SV 1; linear; viral cRNA; STD; VRL; 1540 BP. XX AC MT167186; XX PR Project:PRJNA37813; XX DT 17-MAR-2020 (Rel. 144, Created) DT 17-MAR-2020 (Rel. 144, Last updated, Version 1) XX DE Influenza A virus (A/Alabama/28/2019(H1N1)) segment 5 nucleocapsid protein DE (NP) gene, complete cds. XX KW . XX OS Influenza A virus OC Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Insthoviricetes; OC Articulavirales; Orthomyxoviridae; Alphainfluenzavirus. XX RN [1] RP 1-1540 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT "Influenza Sequencing Activity group"; RL Unpublished. XX RN [2] RP 1-1540 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT ; RL Submitted (09-MAR-2020) to the INSDC. RL WHO Collaborating Center for Surveillance, Epidemiology and Control of RL Influenza, Influenza Division, Centers for Disease Control and Prevention, RL 1600 Clifton Road, N.E., Atlanta, GA 30333, USA XX DR MD5; bb886fe2e740a1800a8d5316555294b0. XX CC ##FluData-START## CC EPI_ISOLATE_ID :: EPI_ISL_409205 CC NAME :: A/Alabama/28/2019 CC TYPE :: H1N1 CC Segment_name :: NP CC HOST_AGE :: 28 CC HOST_GENDER :: F CC PASSAGE :: C1 (2020-01-15) CC LOCATION :: United States / Alabama CC COLLECT_DATE :: 25-Dec-2019 CC Lineage :: A(H1N1)pdm09 CC RESIST_TO_OSELTAMIVIR :: Sensitive CC RESIST_TO_ZANAMVIR :: Sensitive CC SPECIMEN_ID :: M1912015590 ORIGINAL CC SENDER_LAB :: ADPH Bureau of Clinical Laboratories CC SEQLAB_SAMPLE_ID :: 3026054471 CC EPI_SEQUENCE_ID :: EPI1684486 CC ##FluData-END## XX FH Key Location/Qualifiers FH FT source 1..1540 FT /organism="Influenza A virus" FT /segment="5" FT /host="Homo sapiens" FT /strain="A/Alabama/28/2019" FT /serotype="H1N1" FT /mol_type="viral cRNA" FT /country="USA:Alabama" FT /collection_date="25-Dec-2019" FT /db_xref="taxon:11320" FT gene 34..1530 FT /gene="NP" FT CDS 34..1530 FT /codon_start=1 FT /gene="NP" FT /product="nucleocapsid protein" FT /protein_id="QIJ23673.1" FT /translation="MASQGTKRSYEQMETGGERQDTTEIRASVGRMIGGIGRFYIQMCT FT ELKLSDYDGRLIQNSITIERMVLSSFDERRNKYLEEHPSAGKDPKKTGGPIYRRIDGKW FT TRELILYDKEEIRRVWRQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRM FT CSLMQGSTLPRRSGAAGAAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTRVAYERM FT CNILKGKFQTAAQRAMMDQVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVY FT GLAVASGHDFEREGYSLVGIDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFED FT LRVSSFIRGKKVIPRGKLSTRGVQIASNENVETMDSNTLELRSRYWAIRTRSGGNTNQQ FT KASAGQISVQPTFSVQRNLPFERATIMAAFSGNNEGRTSDMRTEIIRMMESAKPEDLSF FT QGRGVFELSDEKATNPIVPSFDMSNEGSYFFGDNAEEYDN" XX SQ Sequence 1540 BP; 527 A; 296 C; 391 G; 326 T; 0 other; gtagataatc actcaatgag tgacatcgaa gccatggcgt ctcaaggcac caaacgatca 60 tatgaacaaa tggagactgg tggggagcgc caggatacca cagaaatcag agcatctgtt 120 ggaagaatga ttggtggaat cgggagattc tacatccaaa tgtgcactga actaaaactc 180 agtgattatg atggacgact aatccagaac agcataacaa tagagaggat ggtgctttct 240 tcttttgatg agagaagaaa taaataccta gaagagcatc caagtgctgg gaaggaccct 300 aagaaaacag gaggacccat ctatagaaga atagacggaa aatggacaag agaactcatc 360 ctttatgaca aagaagaaat aaggagagtt tggcgccaag caaacaatgg cgaagatgca 420 acagcaggtc ttactcatat catgatttgg cattccaatc tgaatgatgc cacatatcag 480 aggacaagag cacttgttcg cactggaatg gatcccagaa tgtgctctct aatgcaaggt 540 tcaacacttc ccagaaggtc tggtgccgca ggtgctgcag taaaaggagt tggaacaata 600 gctatggagt taatcagaat gataaaacgt ggaatcaatg accgaaattt ctggaggggt 660 gaaaatggaa gaaggacaag agttgcttat gaaagaatgt gcaatatcct caaaggaaaa 720 tttcaaacag ctgcccagag ggcaatgatg gatcaagtaa gagaaagtcg aaacccagga 780 aacgctgaga ttgaagacct cattttcctg gcacggtcag cactcattct gagaggatca 840 gttgcacata aatcctgcct gcctgcttgt gtgtatgggc ttgcagtagc aagtggccat 900 gactttgaaa gggaagggta ctcactggtc gggatagacc cattcaaatt actccaaaac 960 agtcaagtgg tcagcctgat gagaccaaat gaaaatccag ctcacaagag tcaattggta 1020 tggatggcat gccactctgc tgcatttgaa gatttaagag tatcaagttt cataagagga 1080 aagaaagtga tcccaagagg aaagctttcc acaagagggg ttcagattgc ttcaaatgag 1140 aatgtggaaa ccatggactc caataccctg gaactaagaa gcagatactg ggccataaga 1200 accaggagtg gaggaaatac caatcaacag aaggcatctg caggccagat cagtgtgcag 1260 cctacattct cagtgcagcg aaatctccct tttgaaagag caaccattat ggcagcattc 1320 agcgggaaca atgaaggacg gacatccgac atgcgaacag aaattataag aatgatggaa 1380 agtgcaaagc cagaggattt gtccttccag gggcggggag tcttcgagct ctcggacgaa 1440 aaggcaacga acccgatcgt gccttccttt gacatgagta atgaagggtc ttatttcttc 1500 ggagacaatg cagaggagta tgacaattga agaaaaatac 1540 // ID MT167187; SV 1; linear; viral cRNA; STD; VRL; 1433 BP. XX AC MT167187; XX PR Project:PRJNA37813; XX DT 17-MAR-2020 (Rel. 144, Created) DT 17-MAR-2020 (Rel. 144, Last updated, Version 1) XX DE Influenza A virus (A/Alabama/28/2019(H1N1)) segment 6 neuraminidase (NA) DE gene, complete cds. XX KW . XX OS Influenza A virus OC Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Insthoviricetes; OC Articulavirales; Orthomyxoviridae; Alphainfluenzavirus. XX RN [1] RP 1-1433 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT "Influenza Sequencing Activity group"; RL Unpublished. XX RN [2] RP 1-1433 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT ; RL Submitted (09-MAR-2020) to the INSDC. RL WHO Collaborating Center for Surveillance, Epidemiology and Control of RL Influenza, Influenza Division, Centers for Disease Control and Prevention, RL 1600 Clifton Road, N.E., Atlanta, GA 30333, USA XX DR MD5; 7a02cdeee12d225cc1cb9cc9870c7d3d. XX CC ##FluData-START## CC EPI_ISOLATE_ID :: EPI_ISL_409205 CC NAME :: A/Alabama/28/2019 CC TYPE :: H1N1 CC Segment_name :: NA CC HOST_AGE :: 28 CC HOST_GENDER :: F CC PASSAGE :: C1 (2020-01-15) CC LOCATION :: United States / Alabama CC COLLECT_DATE :: 25-Dec-2019 CC Lineage :: A(H1N1)pdm09 CC RESIST_TO_OSELTAMIVIR :: Sensitive CC RESIST_TO_ZANAMVIR :: Sensitive CC SPECIMEN_ID :: M1912015590 ORIGINAL CC SENDER_LAB :: ADPH Bureau of Clinical Laboratories CC SEQLAB_SAMPLE_ID :: 3026054471 CC EPI_SEQUENCE_ID :: EPI1684492 CC ##FluData-END## XX FH Key Location/Qualifiers FH FT source 1..1433 FT /organism="Influenza A virus" FT /segment="6" FT /host="Homo sapiens" FT /strain="A/Alabama/28/2019" FT /serotype="H1N1" FT /mol_type="viral cRNA" FT /country="USA:Alabama" FT /collection_date="25-Dec-2019" FT /db_xref="taxon:11320" FT gene 9..1418 FT /gene="NA" FT CDS 9..1418 FT /codon_start=1 FT /gene="NA" FT /product="neuraminidase" FT /protein_id="QIJ23674.1" FT /translation="MNPNQKIITIGSICMTIGMANLILQIGNIISIWVSHSIQIGNQSQ FT IETCNKNVITYENNTWVNQTYVNISNTNSAARQSVASVKLAGNSSLCPVSGWAIYSKDN FT SVRIGSKGDVFVIREPFISCSPLECRTFFLTQGALLNDKHSNGTIKDRSPYRTLMSCPI FT GEVPSPYNSRFESVAWSASACHDGTNWLTIGISGPDSGAVAVLKYNGIITDTIKSWRNN FT ILRTQESECACVNGSCFTIMTDGPSDGQASYKIFRIEKGKIIKSVEMKAPNYHYEECSC FT YPDSSEITCVCRDNWHGSNRPWVSFNQNLEYQMGYICSGVFGDNPRPNDKTGSCGPVSS FT NGANGVKGFSFKYGNGVWIGRTKSISSRKGFEMIWDPNGWTGTDNKFSKKQDIVGINEW FT SGYSGSFVQHPELTGLNCIRPCFWVELIRGRPEENTIWTSGSSISFCGVDSDIVGWSWP FT DGAELPFTIDK" XX SQ Sequence 1433 BP; 465 A; 266 C; 332 G; 370 T; 0 other; agtttaaaat gaatccaaac caaaagataa taaccattgg ctctatctgt atgacaattg 60 gaatggctaa cttaatatta caaattggaa acataatctc aatatgggtt agccactcaa 120 ttcaaattgg aaatcaaagc cagattgaaa catgcaataa aaacgtcatc acttatgaaa 180 acaacacttg ggtaaatcag acatatgtta acatcagcaa caccaactct gctgctagac 240 agtcagtggc ttccgtgaaa ttagcgggca attcctctct ctgccctgtc agtggatggg 300 ctatatacag taaagacaac agtgtaagaa tcggttccaa gggggatgtg tttgtcataa 360 gggaaccatt catatcatgc tctcccttgg aatgcagaac cttcttcttg actcaagggg 420 ctttgctaaa tgacaaacac tccaatggaa ccattaaaga cagaagccca tatcgaaccc 480 taatgagctg tcctattggt gaagttccct ctccatacaa ctcaagattt gagtcagtcg 540 cttggtcagc aagtgcttgt catgatggca ccaattggct aacaattgga atttctggcc 600 cagacagtgg ggcagtggct gtgttaaaat acaatggcat aataacagac actatcaaga 660 gttggaggaa caatatattg agaacacaag agtctgaatg tgcatgtgta aatggttctt 720 gctttaccat aatgaccgat ggaccaagtg atggacaggc ctcatacaaa atcttcagaa 780 tagaaaaggg aaagataatc aaatcagtcg aaatgaaagc ccctaattat cactatgagg 840 aatgctcctg ttaccctgat tctagtgaaa tcacatgtgt gtgcagggat aactggcatg 900 gctcgaatcg accgtgggtg tctttcaacc agaatctgga ataccagatg ggatacatat 960 gcagtggggt tttcggagac aatccacgcc ctaatgataa gacaggcagt tgtggtccag 1020 tatcgtctaa tggagcaaat ggggtaaaag gattttcatt caaatacggc aatggtgttt 1080 ggatagggag aactaagagc attagttcaa gaaaaggttt tgagatgatt tgggatccga 1140 atggatggac tgggactgac aataaattct caaaaaagca agatatcgta ggaataaatg 1200 agtggtcagg gtatagcggg agttttgttc agcatccaga actaacaggg ctgaattgta 1260 taagaccttg cttctgggtt gaactaataa gaggacgacc cgaagagaac acaatctgga 1320 ctagcgggag cagcatatcc ttttgtggtg tagacagtga cattgtgggt tggtcttggc 1380 cagacggtgc tgagttgcca tttaccattg acaagtaatt tgttcaaaaa act 1433 // ID MT167188; SV 1; linear; viral cRNA; STD; VRL; 1002 BP. XX AC MT167188; XX PR Project:PRJNA37813; XX DT 17-MAR-2020 (Rel. 144, Created) DT 17-MAR-2020 (Rel. 144, Last updated, Version 1) XX DE Influenza A virus (A/Alabama/28/2019(H1N1)) segment 7 matrix protein 2 (M2) DE and matrix protein 1 (M1) genes, complete cds. XX KW . XX OS Influenza A virus OC Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Insthoviricetes; OC Articulavirales; Orthomyxoviridae; Alphainfluenzavirus. XX RN [1] RP 1-1002 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT "Influenza Sequencing Activity group"; RL Unpublished. XX RN [2] RP 1-1002 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT ; RL Submitted (09-MAR-2020) to the INSDC. RL WHO Collaborating Center for Surveillance, Epidemiology and Control of RL Influenza, Influenza Division, Centers for Disease Control and Prevention, RL 1600 Clifton Road, N.E., Atlanta, GA 30333, USA XX DR MD5; ec7869fb11eb504b453deba40ad128c0. XX CC ##FluData-START## CC EPI_ISOLATE_ID :: EPI_ISL_409205 CC NAME :: A/Alabama/28/2019 CC TYPE :: H1N1 CC Segment_name :: M CC HOST_AGE :: 28 CC HOST_GENDER :: F CC PASSAGE :: C1 (2020-01-15) CC LOCATION :: United States / Alabama CC COLLECT_DATE :: 25-Dec-2019 CC Lineage :: A(H1N1)pdm09 CC RESIST_TO_OSELTAMIVIR :: Sensitive CC RESIST_TO_ZANAMVIR :: Sensitive CC SPECIMEN_ID :: M1912015590 ORIGINAL CC SENDER_LAB :: ADPH Bureau of Clinical Laboratories CC SEQLAB_SAMPLE_ID :: 3026054471 CC EPI_SEQUENCE_ID :: EPI1684488 CC ##FluData-END## XX FH Key Location/Qualifiers FH FT source 1..1002 FT /organism="Influenza A virus" FT /segment="7" FT /host="Homo sapiens" FT /strain="A/Alabama/28/2019" FT /serotype="H1N1" FT /mol_type="viral cRNA" FT /country="USA:Alabama" FT /collection_date="25-Dec-2019" FT /db_xref="taxon:11320" FT gene 14..995 FT /gene="M2" FT CDS join(14..39,728..995) FT /codon_start=1 FT /gene="M2" FT /product="matrix protein 2" FT /protein_id="QIJ23676.1" FT /translation="MSLLTEVETPTRSEWECRCSGSNDPLVIAANIIGILHLILWITDR FT LFFKCIYRRFKYGLKRGPSTEGVPDSMREEYQQEQHSAVDVDDGHFVNIELE" FT gene 14..772 FT /gene="M1" FT CDS 14..772 FT /codon_start=1 FT /gene="M1" FT /product="matrix protein 1" FT /protein_id="QIJ23675.1" FT /translation="MSLLTEVETYVLSIIPSGPLKAEIAQRLESVFAGKNTDLEALMEW FT LKTRPILSPLTKGILGFVFTLTVPSERGLQRRRFIQNALNGNGDPNNMDRAVKLYKKLK FT REITFHGAKEVSLSYSTGALASCMGLIYNRMGTVTTEAAFGLVCATCEQIADSQHRSHR FT QMATTTNPLIRHENRMVLASTTAKAMEQVAGSSEQAAEAMEIANKTRQMVHAMRTIGTH FT PSSSAGLRDDLLENLQAYQKRMGVQMQRFK" XX SQ Sequence 1002 BP; 303 A; 210 C; 249 G; 240 T; 0 other; tagatgttta aagatgagtc ttctaaccga ggtcgaaacg tacgttcttt ctatcatccc 60 gtcaggcccc ctcaaagccg agatcgcaca gagactggaa agtgtctttg caggaaagaa 120 cacagatctt gaggctctca tggaatggct aaagacaaga ccaatcttgt cacctctgac 180 taagggaatt ttaggatttg tgttcacgct caccgtgccc agtgagcgag gactgcagcg 240 tagacgcttt atccaaaatg ccctaaatgg aaatggggac ccgaacaaca tggatagagc 300 agttaaacta tacaagaaac tcaaaagaga aataacgttc catggggcca aggaggtgtc 360 actaagctat tcaactggtg cacttgcaag ttgcatgggc ctcatataca acaggatggg 420 aacagtgacc acagaagctg ctttcggtct agtttgtgcc acttgtgaac agattgctga 480 ttcacagcat cggtctcaca gacaaatggc tactaccaca aacccactaa tcaggcatga 540 aaacagaatg gtgctggcta gcactacggc aaaggctatg gaacaggtgg ctggatcgag 600 tgaacaggca gcggaggcca tggagattgc taataagact aggcagatgg tacatgcaat 660 gagaactatt ggaactcatc ctagctccag tgctggtcta agagatgacc ttcttgaaaa 720 tttgcaggcc taccagaagc gaatgggagt gcagatgcag cggttcaaat gatcctctcg 780 tcattgcagc aaacatcatt gggatcttgc acctgatatt gtggattact gatcgtcttt 840 ttttcaaatg catttatcgt cgctttaaat acggtttgaa aagagggcct tctacggaag 900 gagtgcctga ttccatgagg gaagaatatc aacaggagca gcatagtgct gtagatgttg 960 acgatggtca ttttgtcaac atagagctag agtaaaaaac ta 1002 // ID MT167189; SV 1; linear; viral cRNA; STD; VRL; 865 BP. XX AC MT167189; XX PR Project:PRJNA37813; XX DT 17-MAR-2020 (Rel. 144, Created) DT 17-MAR-2020 (Rel. 144, Last updated, Version 1) XX DE Influenza A virus (A/Alabama/28/2019(H1N1)) segment 8 nuclear export DE protein (NEP) and nonstructural protein 1 (NS1) genes, complete cds. XX KW . XX OS Influenza A virus OC Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Insthoviricetes; OC Articulavirales; Orthomyxoviridae; Alphainfluenzavirus. XX RN [1] RP 1-865 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT "Influenza Sequencing Activity group"; RL Unpublished. XX RN [2] RP 1-865 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT ; RL Submitted (09-MAR-2020) to the INSDC. RL WHO Collaborating Center for Surveillance, Epidemiology and Control of RL Influenza, Influenza Division, Centers for Disease Control and Prevention, RL 1600 Clifton Road, N.E., Atlanta, GA 30333, USA XX DR MD5; 7d8eda4da0744d0b2ae57d8bd71dc79e. XX CC ##FluData-START## CC EPI_ISOLATE_ID :: EPI_ISL_409205 CC NAME :: A/Alabama/28/2019 CC TYPE :: H1N1 CC Segment_name :: NS CC HOST_AGE :: 28 CC HOST_GENDER :: F CC PASSAGE :: C1 (2020-01-15) CC LOCATION :: United States / Alabama CC COLLECT_DATE :: 25-Dec-2019 CC Lineage :: A(H1N1)pdm09 CC RESIST_TO_OSELTAMIVIR :: Sensitive CC RESIST_TO_ZANAMVIR :: Sensitive CC SPECIMEN_ID :: M1912015590 ORIGINAL CC SENDER_LAB :: ADPH Bureau of Clinical Laboratories CC SEQLAB_SAMPLE_ID :: 3026054471 CC EPI_SEQUENCE_ID :: EPI1684487 CC ##FluData-END## XX FH Key Location/Qualifiers FH FT source 1..865 FT /organism="Influenza A virus" FT /segment="8" FT /host="Homo sapiens" FT /strain="A/Alabama/28/2019" FT /serotype="H1N1" FT /mol_type="viral cRNA" FT /country="USA:Alabama" FT /collection_date="25-Dec-2019" FT /db_xref="taxon:11320" FT gene 15..852 FT /gene="NEP" FT /gene_synonym="NS2" FT CDS join(15..44,517..852) FT /codon_start=1 FT /gene="NEP" FT /gene_synonym="NS2" FT /product="nuclear export protein" FT /note="nonstructural protein 2" FT /protein_id="QIJ23678.1" FT /translation="MESNTMSSFQDILMRMSKMQLGSSSEDLSGMVTRFESLKIYRDSL FT GEAVMRMGDLHYLQSRNEKWREQLGQKFEEIRWLIEEIRHRLKATENSFEQITFMQALQ FT LLLEVEQEIRAFSFQLI" FT gene 15..674 FT /gene="NS1" FT CDS 15..674 FT /codon_start=1 FT /gene="NS1" FT /product="nonstructural protein 1" FT /protein_id="QIJ23677.1" FT /translation="MESNTMSSFQVDCFLWHIRKRFADNGLGDAPFLDRLRRDQKSLKG FT RGNTLGLDIKTATLVGKQIVEWILKEESSETLRMAIASVPTSRYISDMTLEEMSRDWFM FT LMPRQKIIGPLCVRLDQAVMDKNIVLEANFSVIFNRLETLILLRAFTEEGTIVGEISPL FT PSLPGHTYEDVKNAVGVLIGGLEWNGNTVRVSENIQRFAWRSCDENGRPSLPPEQK" XX SQ Sequence 865 BP; 281 A; 164 C; 205 G; 215 T; 0 other; gtgacaaaaa cataatggaa tccaacacca tgtcaagctt tcaggtagac tgttttcttt 60 ggcatattcg caagcgattt gcagacaatg gattgggtga tgccccattc cttgatcggc 120 tacgccgaga tcaaaagtca ttaaaaggaa gaggcaacac ccttggcctc gacatcaaaa 180 cagccactct tgttgggaaa caaattgtgg aatggatttt gaaagaggaa tccagcgaga 240 cacttagaat ggcaattgca tctgtaccta cttcgcgtta catttctgac atgaccctcg 300 aggaaatgtc acgagactgg ttcatgctta tgcctaggca aaagataata ggccctcttt 360 gcgtgcgatt ggaccaggcg gtcatggata agaacatagt actggaagca aacttcagtg 420 taatcttcaa ccgattagag accttgatac tactaagggc tttcactgag gagggaacaa 480 tagttggaga aatttcacca ttaccttctc ttccaggaca tacttatgag gatgtcaaaa 540 atgcagttgg ggtcctcatc ggaggacttg agtggaatgg taacacggtt cgagtctctg 600 aaaatataca gagattcgct tggagaagct gtgatgagaa tgggagacct tcactacctc 660 cagagcagaa atgagaagtg gcgggaacaa ttgggacaga aatttgagga aataaggtgg 720 ttaattgaag aaatacgaca cagattgaaa gcgacagaga atagtttcga acaaataaca 780 tttatgcaag ccttacaact actgcttgaa gtagagcaag agataagagc tttctcgttt 840 cagcttattt aatgataaaa aacac 865 // ID MT167190; SV 1; linear; viral cRNA; STD; VRL; 2316 BP. XX AC MT167190; XX PR Project:PRJNA37813; XX DT 17-MAR-2020 (Rel. 144, Created) DT 17-MAR-2020 (Rel. 144, Last updated, Version 1) XX DE Influenza A virus (A/Alabama/28/2019(H1N1)) segment 1 polymerase PB2 (PB2) DE gene, complete cds. XX KW . XX OS Influenza A virus OC Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Insthoviricetes; OC Articulavirales; Orthomyxoviridae; Alphainfluenzavirus. XX RN [1] RP 1-2316 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT "Influenza Sequencing Activity group"; RL Unpublished. XX RN [2] RP 1-2316 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT ; RL Submitted (09-MAR-2020) to the INSDC. RL WHO Collaborating Center for Surveillance, Epidemiology and Control of RL Influenza, Influenza Division, Centers for Disease Control and Prevention, RL 1600 Clifton Road, N.E., Atlanta, GA 30333, USA XX DR MD5; e9d4eebea7c9e889876411cc6584c18a. XX CC ##FluData-START## CC EPI_ISOLATE_ID :: EPI_ISL_409455 CC NAME :: A/Alabama/28/2019 CC TYPE :: H1N1 CC Segment_name :: PB2 CC HOST_AGE :: 28 CC HOST_GENDER :: F CC PASSAGE :: Original CC LOCATION :: United States / Alabama CC COLLECT_DATE :: 25-Dec-2019 CC Lineage :: A(H1N1)pdm09 CC SPECIMEN_ID :: M1912015590 ORIGINAL CC SENDER_LAB :: ADPH Bureau of Clinical Laboratories CC SEQLAB_SAMPLE_ID :: 3026054471 CC EPI_SEQUENCE_ID :: EPI1686372 CC ##FluData-END## XX FH Key Location/Qualifiers FH FT source 1..2316 FT /organism="Influenza A virus" FT /segment="1" FT /host="Homo sapiens" FT /strain="A/Alabama/28/2019" FT /serotype="H1N1" FT /mol_type="viral cRNA" FT /country="USA:Alabama" FT /collection_date="25-Dec-2019" FT /db_xref="taxon:11320" FT gene 16..2295 FT /gene="PB2" FT CDS 16..2295 FT /codon_start=1 FT /gene="PB2" FT /product="polymerase PB2" FT /protein_id="QIJ23679.1" FT /translation="MERIKELRDLMSQSRTREILTKTTVDHMAIIKKYTSGRQEKNPAL FT RMKWMMAMKYPITADKRIMDIIPERNEQGQTLWSKINDAGSDRVMVSPLAVTWWNRNGP FT TTSTVHYPKVYKTYFEKVERLKHGTFGPVHFRNQVKIRRRVDTNPGHADLSAKEAQDVI FT MEVVFPNEVGARILTSESQLAITKEKKEELQNCKIAPLMVAYMLERELVRKTRFLPVAG FT GTSSVYIEVLHLTQGTCWEQMYTPGGEVRNDDVDQSLIIAARNIVRRAAVSADPLASLL FT EMCHSTQIGGVKMVDILKQNPTEEQAVDICKAAIGLRISSSFSFGGFTFKRTSGSSVKK FT EEEMLTGNLQTLKLRVHEGYEEFTMVGRRATAILRKATRRLIQLIVSGRDEQSIAEAII FT VAMVFSQEDCMIKAVRGDLNFVNRANQRLNPMHQLLRHFQKDAKVLFQNWGIETIDNVM FT GMIGILPDMTPSTEMSLRGIRVSKMGVDEYSSTERVVVSIDRFLRVRDQRGNVLLSPEE FT VSETQGTEKLTITYSSSMMWEINGPESVLVNTYQWIIRNWEIVKIQWSQDPTMLYNKME FT FEPFQSLVPKATRSRYSGFVRTLFQQMRDVLGTFDTVQIIKLLPFAAAPPEQSRMQFSS FT LTVNVRGSGLRILVRGNSPVFNYNKATKRLTILGKDAGALTEDPDEGTSGVESAVLRGF FT LILGKEDKRYGPALSINELSNLAKGEKANVLIGQGDIVLVMKRKRDSSILTDSQTATKR FT IRMAIN" XX SQ Sequence 2316 BP; 792 A; 434 C; 585 G; 504 T; 1 other; tcaaatatat tcaatatgga gagaataaaa gagctgagag atctaatgtc gcagtcccgc 60 actcgcgaga tactcactaa gaccactgtg gaccatatgg ccatcatcaa aaagtacaca 120 tcgggaaggc aagagaagaa ccccgcgctc agaatgaagt ggatgatggc aatgaaatac 180 ccaattacgg cagacaagag aataatggac ataatcccag agaggaatga acaaggacaa 240 accctctgga gcaaaataaa cgatgctgga tcagaccgag tgatggtrtc acctctggca 300 gtaacatggt ggaataggaa tggtccaaca acaagtacag ttcattaccc taaggtatat 360 aaaacttatt tcgaaaaggt cgaaaggttg aaacatggta ccttcggccc tgtccacttc 420 agaaatcaag ttaaaataag gaggagagtt gatacaaacc ctggccatgc agatctcagt 480 gccaaggagg cacaggatgt gattatggaa gttgttttcc caaatgaagt gggggcaaga 540 atactgacat cagagtcaca gctggcaata acaaaagaga agaaagaaga gctccagaat 600 tgtaaaattg ctcccttgat ggtggcgtac atgctagaaa gagaattggt ccgtaaaaca 660 aggtttctcc cggtagccgg tgggacaagc agtgtttata ttgaggtgtt gcacttgacc 720 caagggacgt gctgggagca gatgtacact ccaggaggag aagtgagaaa tgatgatgtt 780 gaccaaagct tgattatcgc tgctagaaac atagtaagaa gagcagcagt gtcagcagac 840 ccattagcat ctctcttgga aatgtgccac agcacacaga ttggaggtgt gaagatggtg 900 gacatcctta aacagaatcc aactgaggag caagccgtag acatatgcaa ggcagcaata 960 gggttgagga tcagctcatc cttcagtttt ggtgggttca ctttcaaaag gacaagcgga 1020 tcatcagtca agaaagaaga agaaatgcta acgggcaacc tccaaacact gaaattaaga 1080 gtacatgaag ggtatgaaga attcacaatg gttgggagaa gagcaacagc tattctcaga 1140 aaggcaacca ggagattgat ccaattaata gtaagcggga gagacgagca gtcaatagct 1200 gaagcaataa ttgtggccat ggtattctca caagaggatt gcatgatcaa agcagttagg 1260 ggcgatctga actttgtcaa tagggcaaac cagagactga atcccatgca ccaactcttg 1320 aggcatttcc aaaaagatgc aaaagtgctt ttccagaact ggggaattga aaccatcgac 1380 aatgtgatgg gaatgatcgg aatactgccc gacatgaccc caagtacgga gatgtcactg 1440 agaggaataa gagtcagcaa gatgggagta gatgaatact ccagcacgga gagagtggta 1500 gtgagtattg accgattttt gagggttaga gatcaaagag gaaacgtact attgtctccc 1560 gaagaagtca gtgaaacgca aggaactgag aagttgacaa taacttattc gtcatcaatg 1620 atgtgggaga tcaacggccc tgagtcagtg ctagtcaaca cttatcaatg gataattaga 1680 aactgggaaa ttgtgaaaat tcaatggtca caagacccca caatgttata caacaaaatg 1740 gaatttgaac catttcagtc tcttgttcct aaggcaacca gaagccggta cagtggattc 1800 gtaaggacac tgttccagca aatgagggat gtgcttggga catttgacac tgtccaaata 1860 ataaaacttc tcccctttgc tgctgctcca ccagaacaga gcaggatgca attttcttca 1920 ttgactgtga atgtgagagg atcagggtta aggatactgg taagaggcaa ttctccagta 1980 ttcaattaca acaaggcaac caaacgactt acgattcttg gaaaggatgc aggtgcattg 2040 actgaagatc cagatgaagg cacatctggg gtggagtctg ctgtcctgag aggattcctc 2100 attttaggca aagaagacaa gagatatggc ccagcattaa gcatcaatga actgagcaat 2160 cttgcaaaag gagagaaagc taatgtgcta attgggcagg gggacatagt gttagtaatg 2220 aaacgaaaac gggactctag catacttact gacagccaga cagcgaccaa aagaattcgg 2280 atggccatca attagtgtcg aattgtttaa aaacga 2316 // ID MT167191; SV 1; linear; viral cRNA; STD; VRL; 2316 BP. XX AC MT167191; XX PR Project:PRJNA37813; XX DT 17-MAR-2020 (Rel. 144, Created) DT 17-MAR-2020 (Rel. 144, Last updated, Version 1) XX DE Influenza A virus (A/Alabama/28/2019(H1N1)) segment 2 polymerase PB1 (PB1) DE gene, complete cds; and nonfunctional PB1-F2 protein (PB1-F2) gene, DE complete sequence. XX KW . XX OS Influenza A virus OC Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Insthoviricetes; OC Articulavirales; Orthomyxoviridae; Alphainfluenzavirus. XX RN [1] RP 1-2316 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT "Influenza Sequencing Activity group"; RL Unpublished. XX RN [2] RP 1-2316 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT ; RL Submitted (09-MAR-2020) to the INSDC. RL WHO Collaborating Center for Surveillance, Epidemiology and Control of RL Influenza, Influenza Division, Centers for Disease Control and Prevention, RL 1600 Clifton Road, N.E., Atlanta, GA 30333, USA XX DR MD5; 7f7fe6b75be150eb6e19d23f858df207. XX CC ##FluData-START## CC EPI_ISOLATE_ID :: EPI_ISL_409455 CC NAME :: A/Alabama/28/2019 CC TYPE :: H1N1 CC Segment_name :: PB1 CC HOST_AGE :: 28 CC HOST_GENDER :: F CC PASSAGE :: Original CC LOCATION :: United States / Alabama CC COLLECT_DATE :: 25-Dec-2019 CC Lineage :: A(H1N1)pdm09 CC SPECIMEN_ID :: M1912015590 ORIGINAL CC SENDER_LAB :: ADPH Bureau of Clinical Laboratories CC SEQLAB_SAMPLE_ID :: 3026054471 CC EPI_SEQUENCE_ID :: EPI1686373 CC ##FluData-END## XX FH Key Location/Qualifiers FH FT source 1..2316 FT /organism="Influenza A virus" FT /segment="2" FT /host="Homo sapiens" FT /strain="A/Alabama/28/2019" FT /serotype="H1N1" FT /mol_type="viral cRNA" FT /country="USA:Alabama" FT /collection_date="25-Dec-2019" FT /db_xref="taxon:11320" FT gene 13..2286 FT /gene="PB1" FT CDS 13..2286 FT /codon_start=1 FT /gene="PB1" FT /product="polymerase PB1" FT /protein_id="QIJ23680.1" FT /translation="MDVNPTLLFLKIPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNR FT THQYSEKGKWTTNTETGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFE FT NSCLETMEVVQQTRVDKLTQGRQTYDWTLNRNQPAATALANTIEVFRSNDLTANESGRL FT IDFLKDVMESMNKEEIEITTHFQRKRRVRDNMTKKMITQRTIGKKKQRLNKRGYLIRAL FT TLNTMTKDAERGKLKRRAIATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAK FT LANVVRKMMTNSQDTEISFTITGDNTKWNENQNPRMFLAMITYITRNQPEWFRNILSMA FT PIMFSNKMARLGKGYMFESKRMKIRTQIPAEMLASIDLKYFNESTRKKIEKIRPLLMDG FT TASLSPGMMMGMFNMLSTVLGVSILNLGQKKYTKTTYWWDGLQSSDDFALIVNAPNHEG FT IQAGVDRFYRTCKLVGINMSKKKSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSGV FT NESADMSIGVTVIKNNMINNDLGPATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFEL FT KKLWDQTQSKVGLLVSDGGPNLYNIRNLHIPEVCLKWELMDDDYRGRLCNPLNPFVSHK FT EIDSVNNAVVMPAHGPAKSMEYDAVATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCN FT LFEKFFPSSSYRRPVGISSMVEAMVSRARIDARVDFESGRIKKEEFSEIMKICSTIEEL FT RRQK" FT gene 107..379 FT /gene="PB1-F2" FT misc_feature 107..379 FT /gene="PB1-F2" FT /note="nonfunctional PB1-F2 protein due to mutation" XX SQ Sequence 2316 BP; 830 A; 436 C; 518 G; 532 T; 0 other; caaaccattt gaatggatgt caatccgact ctacttttcc taaaaattcc agcacaaaat 60 gccataagca ccacattccc ttatactgga gatcctccat acagccatgg aacaggaaca 120 ggatacacca tggacacagt aaacagaaca caccaatact cagaaaaggg gaagtggaca 180 acaaacacag agactggtgc accccagctc aacccgattg acggaccact acctgaagat 240 aatgaaccaa gtgggtatgc acaaacagac tgtgttctag aggctatggc tttccttgaa 300 gaatcccatc caggaatatt tgaaaattca tgccttgaaa caatggaagt tgttcaacaa 360 acaagggtag ataaactgac tcaaggtcgc cagacttatg attggacatt aaacagaaat 420 caaccggcag caactgcatt ggccaacacc atagaagttt tcagatcgaa tgacctaaca 480 gctaacgagt caggaaggct aatagatttc ttaaaggatg tgatggaatc aatgaacaaa 540 gaggaaatag agataacaac ccactttcaa agaaaaagga gagtaagaga caacatgacc 600 aagaagatga tcacgcaaag aacaataggg aagaaaaaac agagactgaa taagagaggc 660 tatctaataa gagcactgac attaaatacg atgaccaaag atgcagagag aggcaagtta 720 aaaagaaggg ctatcgcaac acctgggatg cagattagag gtttcgtata ctttgttgaa 780 actttagcta ggagcatttg cgaaaagctt gaacagtctg ggctcccagt agggggcaat 840 gaaaagaagg ccaaattggc aaatgttgtg agaaagatga tgactaattc acaagataca 900 gagatttctt tcacaatcac tggggacaac actaaatgga atgagaatca aaatcctcga 960 atgttcctag cgatgattac atatatcacc agaaatcaac ccgagtggtt tagaaacatc 1020 ctgagcatgg cacccataat gttctcaaat aaaatggcaa gactaggaaa agggtacatg 1080 ttcgagagta aaagaatgaa gattcgaaca caaataccag cagaaatgct agcaagcatt 1140 gatctaaagt atttcaatga atcgacaagg aagaaaattg agaagataag gcctctttta 1200 atggatggca cagcatcact gagtcctggg atgatgatgg gcatgttcaa catgctaagt 1260 actgtcttgg gagtctcgat actgaatctt ggacaaaaga aatacaccaa gacaacatac 1320 tggtgggatg ggctccaatc atccgacgat tttgctctca tagtgaatgc accaaatcat 1380 gaaggaatac aagcaggagt ggacagattc tacaggacct gcaaattagt gggaatcaac 1440 atgagcaaaa agaagtccta tataaataag acagggacat ttgaattcac aagctttttt 1500 tatcgctatg gatttgtggc taattttagc atggagctac ccagctttgg agtgtctgga 1560 gtaaatgaat cagctgacat gagtattgga gtaacagtga taaagaacaa catgataaac 1620 aatgaccttg gacctgcaac ggctcagatg gctcttcaat tgttcatcaa agactacaga 1680 tacacatata ggtgtcatag gggggataca caaattcaga cgagaagatc atttgagctg 1740 aagaagctat gggatcaaac ccaatcaaag gtagggctat tagtatcaga tggaggacca 1800 aacttataca acatacggaa tcttcacatt cctgaagtct gcttaaaatg ggagctaatg 1860 gatgatgatt atcggggaag actttgtaat cccctgaatc cctttgtgag tcataaggag 1920 attgattctg taaacaatgc tgtggtaatg ccagcccatg gcccagccaa aagcatggaa 1980 tatgatgccg tcgctactac acattcctgg attcccaaga ggaatcgttc tattctcaac 2040 acaagccaaa ggggaattct tgaggatgaa cagatgtacc agaagtgttg caatttattc 2100 gagaaatttt tccctagcag ttcatatagg agaccggttg gaatttctag catggtggag 2160 gccatggtgt ctagggcccg gattgatgcc agagtcgact ttgaatctgg acggattaag 2220 aaagaagagt tctctgagat catgaagatc tgttccacca ttgaagaact cagacggcaa 2280 aaataatgaa tttaacttgt ccttcatgaa aaaatg 2316 // ID MT167192; SV 1; linear; viral cRNA; STD; VRL; 2208 BP. XX AC MT167192; XX PR Project:PRJNA37813; XX DT 17-MAR-2020 (Rel. 144, Created) DT 17-MAR-2020 (Rel. 144, Last updated, Version 1) XX DE Influenza A virus (A/Alabama/28/2019(H1N1)) segment 3 polymerase PA (PA) DE and PA-X protein (PA-X) genes, complete cds. XX KW . XX OS Influenza A virus OC Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Insthoviricetes; OC Articulavirales; Orthomyxoviridae; Alphainfluenzavirus. XX RN [1] RP 1-2208 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT "Influenza Sequencing Activity group"; RL Unpublished. XX RN [2] RP 1-2208 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT ; RL Submitted (09-MAR-2020) to the INSDC. RL WHO Collaborating Center for Surveillance, Epidemiology and Control of RL Influenza, Influenza Division, Centers for Disease Control and Prevention, RL 1600 Clifton Road, N.E., Atlanta, GA 30333, USA XX DR MD5; 1d078fcff6f36d019ac51979d59dac2f. XX CC ##FluData-START## CC EPI_ISOLATE_ID :: EPI_ISL_409455 CC NAME :: A/Alabama/28/2019 CC TYPE :: H1N1 CC Segment_name :: PA CC HOST_AGE :: 28 CC HOST_GENDER :: F CC PASSAGE :: Original CC LOCATION :: United States / Alabama CC COLLECT_DATE :: 25-Dec-2019 CC Lineage :: A(H1N1)pdm09 CC SPECIMEN_ID :: M1912015590 ORIGINAL CC SENDER_LAB :: ADPH Bureau of Clinical Laboratories CC SEQLAB_SAMPLE_ID :: 3026054471 CC EPI_SEQUENCE_ID :: EPI1686371 CC ##FluData-END## XX FH Key Location/Qualifiers FH FT source 1..2208 FT /organism="Influenza A virus" FT /segment="3" FT /host="Homo sapiens" FT /strain="A/Alabama/28/2019" FT /serotype="H1N1" FT /mol_type="viral cRNA" FT /country="USA:Alabama" FT /collection_date="25-Dec-2019" FT /db_xref="taxon:11320" FT gene 13..2163 FT /gene="PA" FT CDS 13..2163 FT /codon_start=1 FT /gene="PA" FT /product="polymerase PA" FT /protein_id="QIJ23681.1" FT /translation="MEDFVRQCFNPMIVELAEKAMKEYGEDPKIETNKFAAICTHLEVC FT FMYSDFHFIDERGESIIVESGDPNALLKHRFEIIEGRDRIMAWTVVNSICNTTGIEKPK FT LLPDLYDYKENRFIEIGVTRREVHIYYLEKANKIKSEKTHIHIFSFTGEEMATKADYTL FT DEESRARIKTRLFTIRQEMASRSLWDSFRQSERGEETIEEKFEITGTMRKLADQSLPPN FT FSSLENFRAYVDGFEPNGCIEGKLSQMSKEVNAKIEPFLRTTPRPLRLPDGPLCHQRSK FT FLLMDALKLSIEDPSHEGEGIPLYDAIKCMKTFFGWKEPKIVKPHEKGVNPNYLMAWKQ FT VLAELQDIENEEKIPRTKNMKKTSQLKWALGENMAPEKVDFDDCKDVGDLKQYDSDEPE FT PRSLASWVQNEFNKACELTDSSWIELDEIGEDVAPIEHIASMRRNYFTAEVSHCRATEY FT IMKGVYINTALLNASCAAMDDFQLIPMISKCRTKEGRRKTNLYGFIIKGRSHLRNDTDV FT VNFVSMEFSLTDPRLEPHKWEKYCVLEIGDMLLRTAIGQVSRPMFLYVRTNGTSKIKMK FT WGMEMRRCLLQSLQQIESMIEAESSVKEKDMTKEFFENKSETWPIGESPRGVEEGSIGK FT VCRTLLAKSVFNSLYASPQLEGFSAESRKLLLIVQALRDNLEPGTFDLGGLYEAIEECL FT INDPWVLLNASWFNSFLTHALK" FT gene 13..712 FT /gene="PA-X" FT CDS join(13..582,584..712) FT /codon_start=1 FT /ribosomal_slippage FT /gene="PA-X" FT /product="PA-X protein" FT /protein_id="QIJ23682.1" FT /translation="MEDFVRQCFNPMIVELAEKAMKEYGEDPKIETNKFAAICTHLEVC FT FMYSDFHFIDERGESIIVESGDPNALLKHRFEIIEGRDRIMAWTVVNSICNTTGIEKPK FT LLPDLYDYKENRFIEIGVTRREVHIYYLEKANKIKSEKTHIHIFSFTGEEMATKADYTL FT DEESRARIKTRLFTIRQEMASRSLWDSFVSPKEAKKQLKKSLKLQELCASLPTKVSHQT FT SPALKTSEPM" XX SQ Sequence 2208 BP; 744 A; 419 C; 515 G; 530 T; 0 other; tactgatcca aaatggaaga ctttgtgcga caatgcttca atccaatgat cgtcgagctt 60 gcggaaaagg caatgaaaga atatggggaa gaccccaaaa ttgaaactaa taagtttgct 120 gcaatttgca cacatttgga agtttgtttc atgtattcgg atttccattt cattgatgaa 180 cggggtgaat caataattgt agaatctggt gacccaaatg cactattgaa gcaccgattt 240 gagataattg aaggaagaga ccgaatcatg gcttggacag tggtgaacag tatatgtaac 300 acaacaggga tagagaagcc taaacttctt cctgatttgt atgattacaa agagaaccgg 360 ttcattgaaa ttggagtaac acggagagaa gttcacatat attacctaga gaaagccaac 420 aaaataaaat ctgaaaagac acacattcac atcttttcat tcactggaga ggagatggcc 480 accaaagcgg actacactct tgacgaagaa agcagagcaa gaatcaaaac taggcttttc 540 actataagac aagaaatggc cagtaggagt ctatgggatt cctttcgtca gtccgaaaga 600 ggcgaagaaa caattgaaga aaagtttgaa attacaggaa ctatgcgcaa gcttgccgac 660 caaagtctcc caccaaactt ctccagcctt gaaaacttca gagcctatgt agatggattc 720 gagccgaatg gctgcattga gggcaagctt tcccaaatgt caaaagaagt gaacgccaaa 780 attgaaccat tcttgaggac gacaccacgc cctctcagat tacctgatgg acctctttgc 840 catcagcggt caaagttcct gctgatggat gctctgaaat taagcattga agacccgagt 900 cacgaggggg aaggaatacc actatatgat gcaatcaaat gcatgaagac attctttggc 960 tggaaagagc ctaaaatagt caaaccacat gagaaaggcg taaatcccaa ttacctcatg 1020 gcttggaagc aggtgctagc agagctacag gacattgaaa atgaagagaa aatcccaagg 1080 acaaagaaca tgaagaaaac aagccaattg aagtgggcac tcggtgaaaa tatggcacct 1140 gaaaaagtgg actttgatga ctgtaaagat gttggagacc ttaaacagta tgacagtgat 1200 gagccagagc ccagatctct agcaagctgg gtccaaaatg aattcaataa ggcatgtgaa 1260 ttgactgatt caagctggat agaacttgat gaaataggag aagatgttgc cccaattgaa 1320 catatagcaa gcatgaggag gaactatttt acagcagaag tgtcccactg cagggctact 1380 gaatacataa tgaagggagt gtacataaat acggccttgc ttaatgcatc ctgtgcagcc 1440 atggatgact ttcagctgat tccaatgata agcaaatgta ggaccaaaga aggaagacgg 1500 aaaacaaacc tttatgggtt cattataaaa ggaaggtctc atttgagaaa tgatactgat 1560 gtggtgaact ttgtaagtat ggagttctca ctcactgatc caagactgga accacacaaa 1620 tgggaaaaat actgtgttct tgaaatagga gacatgctat tgaggactgc gataggtcaa 1680 gtgtcgaggc ccatgttcct atatgtgaga accaatggaa cctccaagat caagatgaaa 1740 tggggcatgg aaatgaggcg ctgccttctt caatctcttc aacagattga gagcatgatt 1800 gaagccgagt cttctgtcaa agagaaagac atgaccaagg aattctttga aaacaaatcg 1860 gaaacatggc caatcggaga gtcacccagg ggagtggagg aaggctctat tggaaaagtg 1920 tgcagaacct tactggcaaa atctgtgttc aacagtctat atgcttctcc acaacttgag 1980 gggttttcgg ctgaatcaag aaaattgctt ctcattgttc aggcacttag ggacaacctg 2040 gaacctggaa cctttgatct tggggggcta tatgaagcaa tcgaggagtg cttgattaat 2100 gatccctggg ttttgcttaa tgcatcttgg ttcaactcct tcctcacaca tgcactgaag 2160 tagttgtggc aatgctacta tttgctatcc atattgtcca aaaaagta 2208 // ID MT167193; SV 1; linear; viral cRNA; STD; VRL; 1752 BP. XX AC MT167193; XX PR Project:PRJNA37813; XX DT 17-MAR-2020 (Rel. 144, Created) DT 17-MAR-2020 (Rel. 144, Last updated, Version 1) XX DE Influenza A virus (A/Alabama/28/2019(H1N1)) segment 4 hemagglutinin (HA) DE gene, complete cds. XX KW . XX OS Influenza A virus OC Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Insthoviricetes; OC Articulavirales; Orthomyxoviridae; Alphainfluenzavirus. XX RN [1] RP 1-1752 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT "Influenza Sequencing Activity group"; RL Unpublished. XX RN [2] RP 1-1752 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT ; RL Submitted (09-MAR-2020) to the INSDC. RL WHO Collaborating Center for Surveillance, Epidemiology and Control of RL Influenza, Influenza Division, Centers for Disease Control and Prevention, RL 1600 Clifton Road, N.E., Atlanta, GA 30333, USA XX DR MD5; 13889976a21e1607330156efe93ebac9. XX CC ##FluData-START## CC EPI_ISOLATE_ID :: EPI_ISL_409455 CC NAME :: A/Alabama/28/2019 CC TYPE :: H1N1 CC Segment_name :: HA CC HOST_AGE :: 28 CC HOST_GENDER :: F CC PASSAGE :: Original CC LOCATION :: United States / Alabama CC COLLECT_DATE :: 25-Dec-2019 CC Lineage :: A(H1N1)pdm09 CC SPECIMEN_ID :: M1912015590 ORIGINAL CC SENDER_LAB :: ADPH Bureau of Clinical Laboratories CC SEQLAB_SAMPLE_ID :: 3026054471 CC EPI_SEQUENCE_ID :: EPI1686375 CC ##FluData-END## XX FH Key Location/Qualifiers FH FT source 1..1752 FT /organism="Influenza A virus" FT /segment="4" FT /host="Homo sapiens" FT /strain="A/Alabama/28/2019" FT /serotype="H1N1" FT /mol_type="viral cRNA" FT /country="USA:Alabama" FT /collection_date="25-Dec-2019" FT /db_xref="taxon:11320" FT gene 21..1721 FT /gene="HA" FT CDS 21..1721 FT /codon_start=1 FT /gene="HA" FT /product="hemagglutinin" FT /function="receptor binding and fusion protein" FT /protein_id="QIJ23683.1" FT /translation="MKAILVVLLYTFTTANADTLCIGYHANNSTDTVDTVLEKNVTVTH FT SVNLLEDKHNGKLCKLRGVAPLHLGKCNIAGWILGNPECESLSTARSWSYIVETSNSDN FT GTCYPGDFINYEELREQLSSVSSFERFEIFPKTSSWPNHDSDKGVTAACPHAGAKSFYK FT NLIWLVKKGNSYPKLNQTYINDKGKEILVLWGIHHPPTIAAQESLYQNADAYVFVGTSR FT YSKKFKPEIATRPKVRDQEGRMNYYWTLVEPGDKITFEATGNLVVPRYAFTMERDAGSG FT IIISDTPVHDCNTTCQTPEGAINTSLPFQNVHPITIGKCPKYVKSTKLRLATGLRNVPS FT IQSRGLFGAIAGFIEGGWTGMVDGWYGYHHQNEQGSGYAADLKSTQNAIDKITNKVNSV FT IEKMNTQFTAVGKEFNHLEKRIENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSN FT VKNLYEKVRNQLKNNAKEIGNGCFEFYHKCDNTCMESVKNGTYDYPKYSEEAKLNREKI FT DGVKLESTRIYQILAIYSTVASSLVLVVSLGAISFWMCSNGSLQCRICI" FT sig_peptide 21..71 FT /gene="HA" FT mat_peptide 72..1052 FT /gene="HA" FT /product="HA1" FT mat_peptide 1053..1718 FT /gene="HA" FT /product="HA2" XX SQ Sequence 1752 BP; 631 A; 327 C; 384 G; 410 T; 0 other; ggaaaacaaa agcaacaaaa atgaaggcaa tactagtagt tctgctgtat acatttacaa 60 ccgcaaatgc agacacatta tgtataggtt atcatgcgaa caattcaaca gacactgtag 120 acacagtact agaaaagaat gtaacagtaa cacactctgt caatcttctg gaagacaagc 180 ataacggaaa actatgcaaa ctaagagggg tagccccatt gcatttgggt aaatgtaaca 240 ttgctggctg gatcctggga aatccagagt gtgaatcact ctccacagca agatcatggt 300 cctacattgt ggaaacatct aattcagaca atggaacgtg ttacccagga gatttcatca 360 attatgagga gctaagagag caattgagct cagtgtcatc atttgaaagg tttgaaatat 420 tccccaagac aagttcatgg cctaatcatg actcggacaa aggtgtaacg gcagcatgtc 480 ctcacgctgg agcaaaaagc ttctacaaaa acttgatatg gctggttaaa aaaggaaatt 540 catacccaaa gctcaaccaa acctacatta atgataaagg gaaagaaatc ctcgtgctgt 600 ggggcattca ccatccacct actattgctg cccaagaaag tctctatcag aatgcagatg 660 catatgtttt tgtggggaca tcaagataca gcaagaagtt caagccggaa atagcaacaa 720 gacccaaagt gagggatcaa gaagggagaa tgaactatta ctggacacta gtagaaccgg 780 gagacaaaat aacattcgaa gcaactggaa atctagtggt accgagatat gcattcacaa 840 tggaaagaga tgctggatct ggcattatca tttcagatac accagtccac gattgcaata 900 caacttgtca gacacccgag ggtgctataa acaccagcct tccatttcag aatgtacatc 960 cgattacaat tgggaaatgt ccaaagtatg taaaaagcac aaaattgaga ctggccacag 1020 gattgaggaa tgtcccgtct attcaatcta gaggcctatt cggggccatt gctggcttca 1080 ttgaaggggg gtggacaggg atggtagatg gatggtacgg ttatcaccat caaaatgagc 1140 aggggtcagg atatgcagcc gatctgaaga gcacacaaaa tgccattgat aagattacta 1200 acaaagtaaa ttctgttata gaaaagatga atacacagtt cacagcagtg ggtaaagagt 1260 tcaaccacct tgaaaaaaga atagagaatc taaataaaaa agttgatgat ggtttcctgg 1320 acatttggac ttacaatgcc gaactgttgg ttctactgga aaacgaaaga actttggact 1380 atcacgattc aaatgtgaag aacttgtatg aaaaagtaag aaaccagtta aaaaacaatg 1440 ccaaggaaat tggaaacggc tgctttgaat tttaccacaa atgcgacaac acatgcatgg 1500 aaagtgtcaa gaatgggact tatgactacc caaaatactc agaggaagca aaattaaaca 1560 gagaaaaaat agatggagta aagctggaat caacaaggat ctaccagatt ttggcgatct 1620 attcaactgt tgccagttca ttggtactgg tagtctccct gggggcaatc agcttctgga 1680 tgtgctctaa tgggtctcta cagtgtagaa tatgtattta acattaggat ttcagaatca 1740 tgagaaaaac ac 1752 // ID MT167194; SV 1; linear; viral cRNA; STD; VRL; 1540 BP. XX AC MT167194; XX PR Project:PRJNA37813; XX DT 17-MAR-2020 (Rel. 144, Created) DT 17-MAR-2020 (Rel. 144, Last updated, Version 1) XX DE Influenza A virus (A/Alabama/28/2019(H1N1)) segment 5 nucleocapsid protein DE (NP) gene, complete cds. XX KW . XX OS Influenza A virus OC Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Insthoviricetes; OC Articulavirales; Orthomyxoviridae; Alphainfluenzavirus. XX RN [1] RP 1-1540 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT "Influenza Sequencing Activity group"; RL Unpublished. XX RN [2] RP 1-1540 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT ; RL Submitted (09-MAR-2020) to the INSDC. RL WHO Collaborating Center for Surveillance, Epidemiology and Control of RL Influenza, Influenza Division, Centers for Disease Control and Prevention, RL 1600 Clifton Road, N.E., Atlanta, GA 30333, USA XX DR MD5; bb886fe2e740a1800a8d5316555294b0. XX CC ##FluData-START## CC EPI_ISOLATE_ID :: EPI_ISL_409455 CC NAME :: A/Alabama/28/2019 CC TYPE :: H1N1 CC Segment_name :: NP CC HOST_AGE :: 28 CC HOST_GENDER :: F CC PASSAGE :: Original CC LOCATION :: United States / Alabama CC COLLECT_DATE :: 25-Dec-2019 CC Lineage :: A(H1N1)pdm09 CC SPECIMEN_ID :: M1912015590 ORIGINAL CC SENDER_LAB :: ADPH Bureau of Clinical Laboratories CC SEQLAB_SAMPLE_ID :: 3026054471 CC EPI_SEQUENCE_ID :: EPI1686368 CC ##FluData-END## XX FH Key Location/Qualifiers FH FT source 1..1540 FT /organism="Influenza A virus" FT /segment="5" FT /host="Homo sapiens" FT /strain="A/Alabama/28/2019" FT /serotype="H1N1" FT /mol_type="viral cRNA" FT /country="USA:Alabama" FT /collection_date="25-Dec-2019" FT /db_xref="taxon:11320" FT gene 34..1530 FT /gene="NP" FT CDS 34..1530 FT /codon_start=1 FT /gene="NP" FT /product="nucleocapsid protein" FT /protein_id="QIJ23684.1" FT /translation="MASQGTKRSYEQMETGGERQDTTEIRASVGRMIGGIGRFYIQMCT FT ELKLSDYDGRLIQNSITIERMVLSSFDERRNKYLEEHPSAGKDPKKTGGPIYRRIDGKW FT TRELILYDKEEIRRVWRQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRM FT CSLMQGSTLPRRSGAAGAAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTRVAYERM FT CNILKGKFQTAAQRAMMDQVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVY FT GLAVASGHDFEREGYSLVGIDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFED FT LRVSSFIRGKKVIPRGKLSTRGVQIASNENVETMDSNTLELRSRYWAIRTRSGGNTNQQ FT KASAGQISVQPTFSVQRNLPFERATIMAAFSGNNEGRTSDMRTEIIRMMESAKPEDLSF FT QGRGVFELSDEKATNPIVPSFDMSNEGSYFFGDNAEEYDN" XX SQ Sequence 1540 BP; 527 A; 296 C; 391 G; 326 T; 0 other; gtagataatc actcaatgag tgacatcgaa gccatggcgt ctcaaggcac caaacgatca 60 tatgaacaaa tggagactgg tggggagcgc caggatacca cagaaatcag agcatctgtt 120 ggaagaatga ttggtggaat cgggagattc tacatccaaa tgtgcactga actaaaactc 180 agtgattatg atggacgact aatccagaac agcataacaa tagagaggat ggtgctttct 240 tcttttgatg agagaagaaa taaataccta gaagagcatc caagtgctgg gaaggaccct 300 aagaaaacag gaggacccat ctatagaaga atagacggaa aatggacaag agaactcatc 360 ctttatgaca aagaagaaat aaggagagtt tggcgccaag caaacaatgg cgaagatgca 420 acagcaggtc ttactcatat catgatttgg cattccaatc tgaatgatgc cacatatcag 480 aggacaagag cacttgttcg cactggaatg gatcccagaa tgtgctctct aatgcaaggt 540 tcaacacttc ccagaaggtc tggtgccgca ggtgctgcag taaaaggagt tggaacaata 600 gctatggagt taatcagaat gataaaacgt ggaatcaatg accgaaattt ctggaggggt 660 gaaaatggaa gaaggacaag agttgcttat gaaagaatgt gcaatatcct caaaggaaaa 720 tttcaaacag ctgcccagag ggcaatgatg gatcaagtaa gagaaagtcg aaacccagga 780 aacgctgaga ttgaagacct cattttcctg gcacggtcag cactcattct gagaggatca 840 gttgcacata aatcctgcct gcctgcttgt gtgtatgggc ttgcagtagc aagtggccat 900 gactttgaaa gggaagggta ctcactggtc gggatagacc cattcaaatt actccaaaac 960 agtcaagtgg tcagcctgat gagaccaaat gaaaatccag ctcacaagag tcaattggta 1020 tggatggcat gccactctgc tgcatttgaa gatttaagag tatcaagttt cataagagga 1080 aagaaagtga tcccaagagg aaagctttcc acaagagggg ttcagattgc ttcaaatgag 1140 aatgtggaaa ccatggactc caataccctg gaactaagaa gcagatactg ggccataaga 1200 accaggagtg gaggaaatac caatcaacag aaggcatctg caggccagat cagtgtgcag 1260 cctacattct cagtgcagcg aaatctccct tttgaaagag caaccattat ggcagcattc 1320 agcgggaaca atgaaggacg gacatccgac atgcgaacag aaattataag aatgatggaa 1380 agtgcaaagc cagaggattt gtccttccag gggcggggag tcttcgagct ctcggacgaa 1440 aaggcaacga acccgatcgt gccttccttt gacatgagta atgaagggtc ttatttcttc 1500 ggagacaatg cagaggagta tgacaattga agaaaaatac 1540 // ID MT167195; SV 1; linear; viral cRNA; STD; VRL; 1433 BP. XX AC MT167195; XX PR Project:PRJNA37813; XX DT 17-MAR-2020 (Rel. 144, Created) DT 17-MAR-2020 (Rel. 144, Last updated, Version 1) XX DE Influenza A virus (A/Alabama/28/2019(H1N1)) segment 6 neuraminidase (NA) DE gene, complete cds. XX KW . XX OS Influenza A virus OC Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Insthoviricetes; OC Articulavirales; Orthomyxoviridae; Alphainfluenzavirus. XX RN [1] RP 1-1433 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT "Influenza Sequencing Activity group"; RL Unpublished. XX RN [2] RP 1-1433 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT ; RL Submitted (09-MAR-2020) to the INSDC. RL WHO Collaborating Center for Surveillance, Epidemiology and Control of RL Influenza, Influenza Division, Centers for Disease Control and Prevention, RL 1600 Clifton Road, N.E., Atlanta, GA 30333, USA XX DR MD5; 7a02cdeee12d225cc1cb9cc9870c7d3d. XX CC ##FluData-START## CC EPI_ISOLATE_ID :: EPI_ISL_409455 CC NAME :: A/Alabama/28/2019 CC TYPE :: H1N1 CC Segment_name :: NA CC HOST_AGE :: 28 CC HOST_GENDER :: F CC PASSAGE :: Original CC LOCATION :: United States / Alabama CC COLLECT_DATE :: 25-Dec-2019 CC Lineage :: A(H1N1)pdm09 CC SPECIMEN_ID :: M1912015590 ORIGINAL CC SENDER_LAB :: ADPH Bureau of Clinical Laboratories CC SEQLAB_SAMPLE_ID :: 3026054471 CC EPI_SEQUENCE_ID :: EPI1686374 CC ##FluData-END## XX FH Key Location/Qualifiers FH FT source 1..1433 FT /organism="Influenza A virus" FT /segment="6" FT /host="Homo sapiens" FT /strain="A/Alabama/28/2019" FT /serotype="H1N1" FT /mol_type="viral cRNA" FT /country="USA:Alabama" FT /collection_date="25-Dec-2019" FT /db_xref="taxon:11320" FT gene 9..1418 FT /gene="NA" FT CDS 9..1418 FT /codon_start=1 FT /gene="NA" FT /product="neuraminidase" FT /protein_id="QIJ23685.1" FT /translation="MNPNQKIITIGSICMTIGMANLILQIGNIISIWVSHSIQIGNQSQ FT IETCNKNVITYENNTWVNQTYVNISNTNSAARQSVASVKLAGNSSLCPVSGWAIYSKDN FT SVRIGSKGDVFVIREPFISCSPLECRTFFLTQGALLNDKHSNGTIKDRSPYRTLMSCPI FT GEVPSPYNSRFESVAWSASACHDGTNWLTIGISGPDSGAVAVLKYNGIITDTIKSWRNN FT ILRTQESECACVNGSCFTIMTDGPSDGQASYKIFRIEKGKIIKSVEMKAPNYHYEECSC FT YPDSSEITCVCRDNWHGSNRPWVSFNQNLEYQMGYICSGVFGDNPRPNDKTGSCGPVSS FT NGANGVKGFSFKYGNGVWIGRTKSISSRKGFEMIWDPNGWTGTDNKFSKKQDIVGINEW FT SGYSGSFVQHPELTGLNCIRPCFWVELIRGRPEENTIWTSGSSISFCGVDSDIVGWSWP FT DGAELPFTIDK" XX SQ Sequence 1433 BP; 465 A; 266 C; 332 G; 370 T; 0 other; agtttaaaat gaatccaaac caaaagataa taaccattgg ctctatctgt atgacaattg 60 gaatggctaa cttaatatta caaattggaa acataatctc aatatgggtt agccactcaa 120 ttcaaattgg aaatcaaagc cagattgaaa catgcaataa aaacgtcatc acttatgaaa 180 acaacacttg ggtaaatcag acatatgtta acatcagcaa caccaactct gctgctagac 240 agtcagtggc ttccgtgaaa ttagcgggca attcctctct ctgccctgtc agtggatggg 300 ctatatacag taaagacaac agtgtaagaa tcggttccaa gggggatgtg tttgtcataa 360 gggaaccatt catatcatgc tctcccttgg aatgcagaac cttcttcttg actcaagggg 420 ctttgctaaa tgacaaacac tccaatggaa ccattaaaga cagaagccca tatcgaaccc 480 taatgagctg tcctattggt gaagttccct ctccatacaa ctcaagattt gagtcagtcg 540 cttggtcagc aagtgcttgt catgatggca ccaattggct aacaattgga atttctggcc 600 cagacagtgg ggcagtggct gtgttaaaat acaatggcat aataacagac actatcaaga 660 gttggaggaa caatatattg agaacacaag agtctgaatg tgcatgtgta aatggttctt 720 gctttaccat aatgaccgat ggaccaagtg atggacaggc ctcatacaaa atcttcagaa 780 tagaaaaggg aaagataatc aaatcagtcg aaatgaaagc ccctaattat cactatgagg 840 aatgctcctg ttaccctgat tctagtgaaa tcacatgtgt gtgcagggat aactggcatg 900 gctcgaatcg accgtgggtg tctttcaacc agaatctgga ataccagatg ggatacatat 960 gcagtggggt tttcggagac aatccacgcc ctaatgataa gacaggcagt tgtggtccag 1020 tatcgtctaa tggagcaaat ggggtaaaag gattttcatt caaatacggc aatggtgttt 1080 ggatagggag aactaagagc attagttcaa gaaaaggttt tgagatgatt tgggatccga 1140 atggatggac tgggactgac aataaattct caaaaaagca agatatcgta ggaataaatg 1200 agtggtcagg gtatagcggg agttttgttc agcatccaga actaacaggg ctgaattgta 1260 taagaccttg cttctgggtt gaactaataa gaggacgacc cgaagagaac acaatctgga 1320 ctagcgggag cagcatatcc ttttgtggtg tagacagtga cattgtgggt tggtcttggc 1380 cagacggtgc tgagttgcca tttaccattg acaagtaatt tgttcaaaaa act 1433 // ID MT167196; SV 1; linear; viral cRNA; STD; VRL; 1002 BP. XX AC MT167196; XX PR Project:PRJNA37813; XX DT 17-MAR-2020 (Rel. 144, Created) DT 17-MAR-2020 (Rel. 144, Last updated, Version 1) XX DE Influenza A virus (A/Alabama/28/2019(H1N1)) segment 7 matrix protein 2 (M2) DE and matrix protein 1 (M1) genes, complete cds. XX KW . XX OS Influenza A virus OC Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Insthoviricetes; OC Articulavirales; Orthomyxoviridae; Alphainfluenzavirus. XX RN [1] RP 1-1002 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT "Influenza Sequencing Activity group"; RL Unpublished. XX RN [2] RP 1-1002 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT ; RL Submitted (09-MAR-2020) to the INSDC. RL WHO Collaborating Center for Surveillance, Epidemiology and Control of RL Influenza, Influenza Division, Centers for Disease Control and Prevention, RL 1600 Clifton Road, N.E., Atlanta, GA 30333, USA XX DR MD5; ec7869fb11eb504b453deba40ad128c0. XX CC ##FluData-START## CC EPI_ISOLATE_ID :: EPI_ISL_409455 CC NAME :: A/Alabama/28/2019 CC TYPE :: H1N1 CC Segment_name :: M CC HOST_AGE :: 28 CC HOST_GENDER :: F CC PASSAGE :: Original CC LOCATION :: United States / Alabama CC COLLECT_DATE :: 25-Dec-2019 CC Lineage :: A(H1N1)pdm09 CC SPECIMEN_ID :: M1912015590 ORIGINAL CC SENDER_LAB :: ADPH Bureau of Clinical Laboratories CC SEQLAB_SAMPLE_ID :: 3026054471 CC EPI_SEQUENCE_ID :: EPI1686370 CC ##FluData-END## XX FH Key Location/Qualifiers FH FT source 1..1002 FT /organism="Influenza A virus" FT /segment="7" FT /host="Homo sapiens" FT /strain="A/Alabama/28/2019" FT /serotype="H1N1" FT /mol_type="viral cRNA" FT /country="USA:Alabama" FT /collection_date="25-Dec-2019" FT /db_xref="taxon:11320" FT gene 14..995 FT /gene="M2" FT CDS join(14..39,728..995) FT /codon_start=1 FT /gene="M2" FT /product="matrix protein 2" FT /protein_id="QIJ23687.1" FT /translation="MSLLTEVETPTRSEWECRCSGSNDPLVIAANIIGILHLILWITDR FT LFFKCIYRRFKYGLKRGPSTEGVPDSMREEYQQEQHSAVDVDDGHFVNIELE" FT gene 14..772 FT /gene="M1" FT CDS 14..772 FT /codon_start=1 FT /gene="M1" FT /product="matrix protein 1" FT /protein_id="QIJ23686.1" FT /translation="MSLLTEVETYVLSIIPSGPLKAEIAQRLESVFAGKNTDLEALMEW FT LKTRPILSPLTKGILGFVFTLTVPSERGLQRRRFIQNALNGNGDPNNMDRAVKLYKKLK FT REITFHGAKEVSLSYSTGALASCMGLIYNRMGTVTTEAAFGLVCATCEQIADSQHRSHR FT QMATTTNPLIRHENRMVLASTTAKAMEQVAGSSEQAAEAMEIANKTRQMVHAMRTIGTH FT PSSSAGLRDDLLENLQAYQKRMGVQMQRFK" XX SQ Sequence 1002 BP; 303 A; 210 C; 249 G; 240 T; 0 other; tagatgttta aagatgagtc ttctaaccga ggtcgaaacg tacgttcttt ctatcatccc 60 gtcaggcccc ctcaaagccg agatcgcaca gagactggaa agtgtctttg caggaaagaa 120 cacagatctt gaggctctca tggaatggct aaagacaaga ccaatcttgt cacctctgac 180 taagggaatt ttaggatttg tgttcacgct caccgtgccc agtgagcgag gactgcagcg 240 tagacgcttt atccaaaatg ccctaaatgg aaatggggac ccgaacaaca tggatagagc 300 agttaaacta tacaagaaac tcaaaagaga aataacgttc catggggcca aggaggtgtc 360 actaagctat tcaactggtg cacttgcaag ttgcatgggc ctcatataca acaggatggg 420 aacagtgacc acagaagctg ctttcggtct agtttgtgcc acttgtgaac agattgctga 480 ttcacagcat cggtctcaca gacaaatggc tactaccaca aacccactaa tcaggcatga 540 aaacagaatg gtgctggcta gcactacggc aaaggctatg gaacaggtgg ctggatcgag 600 tgaacaggca gcggaggcca tggagattgc taataagact aggcagatgg tacatgcaat 660 gagaactatt ggaactcatc ctagctccag tgctggtcta agagatgacc ttcttgaaaa 720 tttgcaggcc taccagaagc gaatgggagt gcagatgcag cggttcaaat gatcctctcg 780 tcattgcagc aaacatcatt gggatcttgc acctgatatt gtggattact gatcgtcttt 840 ttttcaaatg catttatcgt cgctttaaat acggtttgaa aagagggcct tctacggaag 900 gagtgcctga ttccatgagg gaagaatatc aacaggagca gcatagtgct gtagatgttg 960 acgatggtca ttttgtcaac atagagctag agtaaaaaac ta 1002 // ID MT167197; SV 1; linear; viral cRNA; STD; VRL; 865 BP. XX AC MT167197; XX PR Project:PRJNA37813; XX DT 17-MAR-2020 (Rel. 144, Created) DT 17-MAR-2020 (Rel. 144, Last updated, Version 1) XX DE Influenza A virus (A/Alabama/28/2019(H1N1)) segment 8 nuclear export DE protein (NEP) and nonstructural protein 1 (NS1) genes, complete cds. XX KW . XX OS Influenza A virus OC Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Insthoviricetes; OC Articulavirales; Orthomyxoviridae; Alphainfluenzavirus. XX RN [1] RP 1-865 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT "Influenza Sequencing Activity group"; RL Unpublished. XX RN [2] RP 1-865 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT ; RL Submitted (09-MAR-2020) to the INSDC. RL WHO Collaborating Center for Surveillance, Epidemiology and Control of RL Influenza, Influenza Division, Centers for Disease Control and Prevention, RL 1600 Clifton Road, N.E., Atlanta, GA 30333, USA XX DR MD5; 7d8eda4da0744d0b2ae57d8bd71dc79e. XX CC ##FluData-START## CC EPI_ISOLATE_ID :: EPI_ISL_409455 CC NAME :: A/Alabama/28/2019 CC TYPE :: H1N1 CC Segment_name :: NS CC HOST_AGE :: 28 CC HOST_GENDER :: F CC PASSAGE :: Original CC LOCATION :: United States / Alabama CC COLLECT_DATE :: 25-Dec-2019 CC Lineage :: A(H1N1)pdm09 CC SPECIMEN_ID :: M1912015590 ORIGINAL CC SENDER_LAB :: ADPH Bureau of Clinical Laboratories CC SEQLAB_SAMPLE_ID :: 3026054471 CC EPI_SEQUENCE_ID :: EPI1686369 CC ##FluData-END## XX FH Key Location/Qualifiers FH FT source 1..865 FT /organism="Influenza A virus" FT /segment="8" FT /host="Homo sapiens" FT /strain="A/Alabama/28/2019" FT /serotype="H1N1" FT /mol_type="viral cRNA" FT /country="USA:Alabama" FT /collection_date="25-Dec-2019" FT /db_xref="taxon:11320" FT gene 15..852 FT /gene="NEP" FT /gene_synonym="NS2" FT CDS join(15..44,517..852) FT /codon_start=1 FT /gene="NEP" FT /gene_synonym="NS2" FT /product="nuclear export protein" FT /note="nonstructural protein 2" FT /protein_id="QIJ23689.1" FT /translation="MESNTMSSFQDILMRMSKMQLGSSSEDLSGMVTRFESLKIYRDSL FT GEAVMRMGDLHYLQSRNEKWREQLGQKFEEIRWLIEEIRHRLKATENSFEQITFMQALQ FT LLLEVEQEIRAFSFQLI" FT gene 15..674 FT /gene="NS1" FT CDS 15..674 FT /codon_start=1 FT /gene="NS1" FT /product="nonstructural protein 1" FT /protein_id="QIJ23688.1" FT /translation="MESNTMSSFQVDCFLWHIRKRFADNGLGDAPFLDRLRRDQKSLKG FT RGNTLGLDIKTATLVGKQIVEWILKEESSETLRMAIASVPTSRYISDMTLEEMSRDWFM FT LMPRQKIIGPLCVRLDQAVMDKNIVLEANFSVIFNRLETLILLRAFTEEGTIVGEISPL FT PSLPGHTYEDVKNAVGVLIGGLEWNGNTVRVSENIQRFAWRSCDENGRPSLPPEQK" XX SQ Sequence 865 BP; 281 A; 164 C; 205 G; 215 T; 0 other; gtgacaaaaa cataatggaa tccaacacca tgtcaagctt tcaggtagac tgttttcttt 60 ggcatattcg caagcgattt gcagacaatg gattgggtga tgccccattc cttgatcggc 120 tacgccgaga tcaaaagtca ttaaaaggaa gaggcaacac ccttggcctc gacatcaaaa 180 cagccactct tgttgggaaa caaattgtgg aatggatttt gaaagaggaa tccagcgaga 240 cacttagaat ggcaattgca tctgtaccta cttcgcgtta catttctgac atgaccctcg 300 aggaaatgtc acgagactgg ttcatgctta tgcctaggca aaagataata ggccctcttt 360 gcgtgcgatt ggaccaggcg gtcatggata agaacatagt actggaagca aacttcagtg 420 taatcttcaa ccgattagag accttgatac tactaagggc tttcactgag gagggaacaa 480 tagttggaga aatttcacca ttaccttctc ttccaggaca tacttatgag gatgtcaaaa 540 atgcagttgg ggtcctcatc ggaggacttg agtggaatgg taacacggtt cgagtctctg 600 aaaatataca gagattcgct tggagaagct gtgatgagaa tgggagacct tcactacctc 660 cagagcagaa atgagaagtg gcgggaacaa ttgggacaga aatttgagga aataaggtgg 720 ttaattgaag aaatacgaca cagattgaaa gcgacagaga atagtttcga acaaataaca 780 tttatgcaag ccttacaact actgcttgaa gtagagcaag agataagagc tttctcgttt 840 cagcttattt aatgataaaa aacac 865 // ID MT167198; SV 1; linear; viral cRNA; STD; VRL; 2316 BP. XX AC MT167198; XX PR Project:PRJNA37813; XX DT 17-MAR-2020 (Rel. 144, Created) DT 17-MAR-2020 (Rel. 144, Last updated, Version 1) XX DE Influenza A virus (A/Alaska/60/2019(H1N1)) segment 1 polymerase PB2 (PB2) DE gene, complete cds. XX KW . XX OS Influenza A virus OC Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Insthoviricetes; OC Articulavirales; Orthomyxoviridae; Alphainfluenzavirus. XX RN [1] RP 1-2316 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT "Influenza Sequencing Activity group"; RL Unpublished. XX RN [2] RP 1-2316 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT ; RL Submitted (09-MAR-2020) to the INSDC. RL WHO Collaborating Center for Surveillance, Epidemiology and Control of RL Influenza, Influenza Division, Centers for Disease Control and Prevention, RL 1600 Clifton Road, N.E., Atlanta, GA 30333, USA XX DR MD5; 233c7d9dc1eb24cf1a6ad950ba2d4a8a. XX CC ##FluData-START## CC EPI_ISOLATE_ID :: EPI_ISL_409735 CC NAME :: A/Alaska/60/2019 CC TYPE :: H1N1 CC Segment_name :: PB2 CC HOST_AGE :: 6 CC HOST_GENDER :: F CC PASSAGE :: C1 (2020-01-15) CC LOCATION :: United States / Alaska CC COLLECT_DATE :: 19-Dec-2019 CC Lineage :: A(H1N1)pdm09 CC RESIST_TO_OSELTAMIVIR :: Sensitive CC RESIST_TO_ZANAMVIR :: Sensitive CC SPECIMEN_ID :: 359081 ORIGINAL CC SENDER_LAB :: Alaska State Virology Lab CC SEQLAB_SAMPLE_ID :: 3026054428 CC EPI_SEQUENCE_ID :: EPI1688677 CC ##FluData-END## XX FH Key Location/Qualifiers FH FT source 1..2316 FT /organism="Influenza A virus" FT /segment="1" FT /host="Homo sapiens" FT /strain="A/Alaska/60/2019" FT /serotype="H1N1" FT /mol_type="viral cRNA" FT /country="USA:Alaska" FT /collection_date="19-Dec-2019" FT /db_xref="taxon:11320" FT gene 16..2295 FT /gene="PB2" FT CDS 16..2295 FT /codon_start=1 FT /gene="PB2" FT /product="polymerase PB2" FT /protein_id="QIJ23690.1" FT /translation="MERIKELRDLMSQSRTREILTKTTVDHMAIIKKYTSGRQEKNPAL FT RMKWMMAMKYPITADKRIMDIIPERNEQGQTLWSKINDAGSDRVMVSPLAVTWWNRNGP FT TTSTVHYPKVYKTYFEKVERLKHGTFGPVHFRNQVKIRRRVDTNPGHADLSAKEAQDVI FT MEVVFPNEVGARILTSESQLAITKEKKEELQNCKIAPLMVAYMLERELVRKTRFLPVAG FT GTSSVYIEVLHLTQGTCWEQMYTPGGEVRNDDVDQSLIIAARNIVRRAAVSADPLASLL FT EMCHSTQIGGVKMVDILKQNPTEEQAVDICKAAIGLRISSSFSFGGFTFKRTSGSSVKK FT EEEMLTGNLQTLKLRVHEGYEEFTMVGRRATAILRKATRRLIQLIVSGRDEQSIAEAII FT VAMVFSQEDCMIKAVRGDLNFVNRANQRLNPMHQLLRHFQKDAKVLFQNWGIETIDNVM FT GMIGILPDMTPSTEMSLRGIRVSKMGVDEYSSTERVVVSIDRFLRVRDQRGNVLLSPEE FT VSETQGTEKLTITYSSSMMWEINGPESVLVNTYQWIIRNWEIVKIQWSQDPTMLYNKME FT FEPFQSLVPKATRSRYSGFVRTLFQQMRDVLGTFDTVQIIKLLPFAAAPPEQSRMQFSS FT LTVNVRGSGLRILVRGNSPVFNYNKATKRLTILGKDAGALTEDPDEGTSGVESAVLRGF FT LILGKEDKRYGPALSINELSNLAKGEKANVLIGQGDIVLVMKRKRDSSILTDSQTATKR FT IRMAIN" XX SQ Sequence 2316 BP; 792 A; 433 C; 586 G; 505 T; 0 other; tcaaatatat tcaatatgga gagaataaaa gagctgagag atctaatgtc gcagtcccgc 60 actcgcgaga tactcactaa gaccactgtg gaccatatgg ccatcatcaa aaagtacaca 120 tcgggaaggc aagagaagaa ccccgcgctc agaatgaagt ggatgatggc aatgaaatac 180 ccaattacgg cagacaagag aataatggac ataatcccag agaggaatga acaaggacaa 240 accctctgga gcaaaataaa cgatgctgga tcagaccgag tgatggtatc acctctggca 300 gtaacatggt ggaataggaa tggtccaaca acaagtacag ttcattaccc taaggtatat 360 aaaacttatt tcgaaaaggt cgaaaggttg aaacatggta ccttcggccc tgtccacttc 420 agaaatcaag ttaaaataag gaggagagtt gacacaaacc ctggccatgc agatctcagt 480 gccaaggagg cacaggatgt gattatggaa gttgttttcc caaatgaagt gggggcaaga 540 atactgacat cagagtcaca gctggcaata acaaaagaga agaaagaaga gctccagaat 600 tgtaaaattg ctcccttgat ggtggcgtac atgctagaaa gagaattggt ccgtaaaaca 660 aggtttctcc cggtagccgg tgggacaagc agtgtttata ttgaggtgtt gcacttgacc 720 caagggacgt gctgggagca gatgtacact ccaggaggag aagtgagaaa tgatgatgtt 780 gaccaaagct tgattatcgc tgctagaaac atagtaagaa gagcagcagt gtcagcagac 840 ccattagcat ctctcttgga aatgtgccac agcacacaga ttggaggtgt gaagatggtg 900 gacatcctta aacagaatcc aactgaggag caagccgtag acatatgcaa ggcagcaata 960 gggttgagga tcagctcatc tttcagtttt ggtgggttca ctttcaaaag gacaagcgga 1020 tcatcagtca agaaagaaga agaaatgcta acgggcaacc tccaaacact gaaattaaga 1080 gtacatgaag ggtatgaaga attcacaatg gttgggagaa gggcaacagc tattctcaga 1140 aaggcaacca ggagattgat ccaattaata gtaagcggga gagacgagca gtcaatagct 1200 gaagcaataa ttgtggccat ggtattctca caagaggatt gcatgatcaa agcagttagg 1260 ggcgatctga actttgtcaa tagggcaaac cagagactga atcccatgca ccaactcttg 1320 aggcatttcc aaaaagatgc aaaagtgctt ttccagaact ggggaattga aaccatcgac 1380 aatgtgatgg gaatgatcgg aatactgccc gacatgaccc caagtacgga gatgtcactg 1440 agaggaataa gagtcagcaa gatgggagta gatgaatact ccagcacgga gagagtggta 1500 gtgagtattg accgattttt gagggttaga gatcaaagag gaaacgtact gttgtctccc 1560 gaagaagtta gtgaaacgca aggaactgag aagttaacaa taacttattc gtcatcaatg 1620 atgtgggaga tcaacggccc tgagtcagtg ctagtcaaca cttatcaatg gataatcaga 1680 aactgggaaa ttgtgaaaat tcaatggtca caagacccca caatgttata caacaaaatg 1740 gaatttgaac catttcagtc tcttgttcct aaggcaacca gaagccggta cagtggattc 1800 gtaaggacac tgttccagca aatgagggat gtgcttggga catttgacac tgttcaaata 1860 ataaaacttc tcccctttgc tgctgctcca ccagaacaga gcaggatgca attttcttca 1920 ttgactgtga atgtgagagg atcagggtta aggatactgg taagaggcaa ttctccagta 1980 ttcaattaca acaaggcaac caaacgactt acgattcttg gaaaggatgc aggtgcattg 2040 actgaagatc cagatgaagg cacatctggg gtggagtctg ctgtcctgag aggattcctc 2100 attttaggca aagaagacaa gagatatggc ccagcattaa gcatcaatga actgagcaat 2160 cttgcaaaag gagagaaagc taatgtgcta attgggcagg gggacatagt gttagtaatg 2220 aaacgaaaac gggactctag catacttact gacagccaga cagcgaccaa aagaattcgg 2280 atggccatca attagtgtcg aattgtttaa aaacga 2316 // ID MT167199; SV 1; linear; viral cRNA; STD; VRL; 2316 BP. XX AC MT167199; XX PR Project:PRJNA37813; XX DT 17-MAR-2020 (Rel. 144, Created) DT 17-MAR-2020 (Rel. 144, Last updated, Version 1) XX DE Influenza A virus (A/Alaska/60/2019(H1N1)) segment 2 polymerase PB1 (PB1) DE gene, complete cds; and nonfunctional PB1-F2 protein (PB1-F2) gene, DE complete sequence. XX KW . XX OS Influenza A virus OC Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Insthoviricetes; OC Articulavirales; Orthomyxoviridae; Alphainfluenzavirus. XX RN [1] RP 1-2316 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT "Influenza Sequencing Activity group"; RL Unpublished. XX RN [2] RP 1-2316 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT ; RL Submitted (09-MAR-2020) to the INSDC. RL WHO Collaborating Center for Surveillance, Epidemiology and Control of RL Influenza, Influenza Division, Centers for Disease Control and Prevention, RL 1600 Clifton Road, N.E., Atlanta, GA 30333, USA XX DR MD5; 17401ef39379b65cf307c32a8ed31cf9. XX CC ##FluData-START## CC EPI_ISOLATE_ID :: EPI_ISL_409735 CC NAME :: A/Alaska/60/2019 CC TYPE :: H1N1 CC Segment_name :: PB1 CC HOST_AGE :: 6 CC HOST_GENDER :: F CC PASSAGE :: C1 (2020-01-15) CC LOCATION :: United States / Alaska CC COLLECT_DATE :: 19-Dec-2019 CC Lineage :: A(H1N1)pdm09 CC RESIST_TO_OSELTAMIVIR :: Sensitive CC RESIST_TO_ZANAMVIR :: Sensitive CC SPECIMEN_ID :: 359081 ORIGINAL CC SENDER_LAB :: Alaska State Virology Lab CC SEQLAB_SAMPLE_ID :: 3026054428 CC EPI_SEQUENCE_ID :: EPI1688678 CC ##FluData-END## XX FH Key Location/Qualifiers FH FT source 1..2316 FT /organism="Influenza A virus" FT /segment="2" FT /host="Homo sapiens" FT /strain="A/Alaska/60/2019" FT /serotype="H1N1" FT /mol_type="viral cRNA" FT /country="USA:Alaska" FT /collection_date="19-Dec-2019" FT /db_xref="taxon:11320" FT gene 13..2286 FT /gene="PB1" FT CDS 13..2286 FT /codon_start=1 FT /gene="PB1" FT /product="polymerase PB1" FT /protein_id="QIJ23691.1" FT /translation="MDVNPTLLFLKIPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNR FT THQYSEKGKWTTNTETGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFE FT NSCLETMEVVQQTRVDKLTQGRQTYDWTLNRNQPAATALANTIEVFRSNDLTANESGRL FT IDFLKDVMESMNKEEIEITTHFQRKRRVRDNMTKKMITQRTIGKKKQRLNKRGYLIRAL FT TLNTMTKDAERGKLKRRAIATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAK FT LANVVRKMMTNSQDTEISFTITGDNTKWNENQNPRMFLAMITYITRNQPEWFRNILSMA FT PIMFSNKMARLGKGYMFESKRMKIRTQIPAEMLASIDLKYFNESTRKKIEKIRPLLMDG FT TASLSPGMMMGMFNMLSTVLGVSILNLGQKKYTKTTYWWDGLQSSDDFALIVNAPNHEG FT IQAGVDRFYRTCKLVGINMSKKKSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSGV FT NESADMSIGVTVIKNNMINNDLGPATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFEL FT KKLWDQTQSKVGLLVSDGGPNLYNIRNLHIPEVCLKWELMDDDYRGRLCNPLNPFVSHK FT EIDSVNNAVVLPAHGPAKSMEYDAVATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCN FT LFEKFFPSSSYRRPVGISSMVEAMVSRARIDARVDFESGRIKKEEFSEIMKICSTIEEL FT RRQK" FT gene 107..379 FT /gene="PB1-F2" FT misc_feature 107..379 FT /gene="PB1-F2" FT /note="nonfunctional PB1-F2 protein due to mutation" XX SQ Sequence 2316 BP; 828 A; 439 C; 518 G; 531 T; 0 other; caaaccattt gaatggatgt caatccgact ctacttttcc taaaaattcc agcacaaaat 60 gccataagca ccacattccc ttatactgga gatcctccat acagccatgg aacaggaaca 120 ggatacacca tggacacagt aaacagaaca caccaatact cagaaaaggg gaagtggaca 180 accaacacag agactggtgc accccagctc aacccgattg acggaccact acctgaagat 240 aatgaaccaa gtgggtatgc acaaacagac tgtgttctag aggctatggc tttccttgaa 300 gaatcccatc caggaatatt tgaaaattca tgccttgaaa caatggaagt tgttcaacaa 360 acaagggtag ataaactgac tcaaggtcgc cagacttatg attggacatt aaacagaaat 420 caaccggcag caactgcatt ggccaacacc atagaagttt tcagatcgaa tgacctaaca 480 gctaacgagt caggaaggct aatagatttc ttaaaggatg tgatggaatc aatgaacaaa 540 gaggaaatag agataacaac ccactttcaa agaaaaagga gagtaagaga caacatgacc 600 aagaagatga tcacgcaaag aacaataggg aagaaaaaac agagactgaa taagagaggc 660 tatctaataa gagcactgac attaaatacg atgaccaaag atgcagagag aggcaagtta 720 aaaagaaggg ctatcgcaac acctgggatg cagattagag gtttcgtata ctttgttgaa 780 actttagcta ggagcatttg cgaaaagctt gaacagtctg ggctcccagt agggggcaat 840 gaaaagaagg ccaaattggc aaatgttgtg agaaagatga tgactaattc acaagataca 900 gaaatttctt tcacaatcac tggggacaac actaaatgga atgagaatca aaatcctcga 960 atgttcctgg cgatgattac atatatcacc agaaatcaac ccgagtggtt tagaaacatc 1020 ctgagcatgg cacccataat gttctcaaat aaaatggcaa gactagggaa agggtacatg 1080 ttcgagagta aaagaatgaa gattcgaaca caaataccag cagaaatgct agcaagcatt 1140 gatctaaagt atttcaatga atcaacaagg aagaaaattg agaagataag gcctctttta 1200 atggatggca cagcatcact gagtcctggg atgatgatgg gcatgttcaa catgctaagt 1260 actgtcttgg gagtctcgat actgaatctt ggacaaaaga aatacaccaa gacaacatac 1320 tggtgggatg ggctccaatc atccgacgat tttgctctca tagtgaatgc accaaaccat 1380 gaaggaatac aagcaggagt ggacagattc tacaggacct gcaaattagt gggaatcaac 1440 atgagcaaaa agaagtccta tataaataag acagggacat ttgaattcac aagctttttt 1500 tatcgctatg gatttgtggc taattttagc atggagctac ccagctttgg agtgtctgga 1560 gtaaatgaat cagctgacat gagtattgga gtaacagtga taaagaacaa catgataaac 1620 aatgaccttg gacctgcaac ggctcagatg gctcttcaat tgttcatcaa agactacaga 1680 tacacatata ggtgtcatag gggagacaca caaattcaga cgagaagatc atttgagttg 1740 aagaagctat gggatcaaac ccaatcaaag gtagggctat tagtatcaga tggaggacca 1800 aacttataca acatacggaa tcttcacatt cctgaagtct gcttaaaatg ggagctaatg 1860 gatgatgatt atcggggaag actttgtaat cccctgaatc cctttgtgag tcataaggag 1920 attgattctg taaacaatgc tgtggtactg ccagcccatg gcccagccaa aagcatggaa 1980 tatgatgccg tcgctactac acattcctgg attcccaaga ggaatcgttc tattctcaac 2040 acaagccaaa ggggaattct tgaggatgaa cagatgtacc agaagtgttg caatttattc 2100 gagaaatttt tccctagcag ttcatatagg agaccggttg gaatttctag catggtggag 2160 gccatggtgt ctagggcccg gattgatgcc agagtcgact ttgagtctgg acggattaag 2220 aaagaagagt tctctgagat catgaagatc tgttccacca ttgaagaact cagacggcaa 2280 aaataatgaa tttaacttgt ccttcatgaa aaaatg 2316 // ID MT167200; SV 1; linear; viral cRNA; STD; VRL; 2208 BP. XX AC MT167200; XX PR Project:PRJNA37813; XX DT 17-MAR-2020 (Rel. 144, Created) DT 17-MAR-2020 (Rel. 144, Last updated, Version 1) XX DE Influenza A virus (A/Alaska/60/2019(H1N1)) segment 3 polymerase PA (PA) and DE PA-X protein (PA-X) genes, complete cds. XX KW . XX OS Influenza A virus OC Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Insthoviricetes; OC Articulavirales; Orthomyxoviridae; Alphainfluenzavirus. XX RN [1] RP 1-2208 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT "Influenza Sequencing Activity group"; RL Unpublished. XX RN [2] RP 1-2208 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT ; RL Submitted (09-MAR-2020) to the INSDC. RL WHO Collaborating Center for Surveillance, Epidemiology and Control of RL Influenza, Influenza Division, Centers for Disease Control and Prevention, RL 1600 Clifton Road, N.E., Atlanta, GA 30333, USA XX DR MD5; 071c2c3dd65cd81027f0721317808bab. XX CC ##FluData-START## CC EPI_ISOLATE_ID :: EPI_ISL_409735 CC NAME :: A/Alaska/60/2019 CC TYPE :: H1N1 CC Segment_name :: PA CC HOST_AGE :: 6 CC HOST_GENDER :: F CC PASSAGE :: C1 (2020-01-15) CC LOCATION :: United States / Alaska CC COLLECT_DATE :: 19-Dec-2019 CC Lineage :: A(H1N1)pdm09 CC RESIST_TO_OSELTAMIVIR :: Sensitive CC RESIST_TO_ZANAMVIR :: Sensitive CC SPECIMEN_ID :: 359081 ORIGINAL CC SENDER_LAB :: Alaska State Virology Lab CC SEQLAB_SAMPLE_ID :: 3026054428 CC EPI_SEQUENCE_ID :: EPI1688676 CC ##FluData-END## XX FH Key Location/Qualifiers FH FT source 1..2208 FT /organism="Influenza A virus" FT /segment="3" FT /host="Homo sapiens" FT /strain="A/Alaska/60/2019" FT /serotype="H1N1" FT /mol_type="viral cRNA" FT /country="USA:Alaska" FT /collection_date="19-Dec-2019" FT /db_xref="taxon:11320" FT gene 13..2163 FT /gene="PA" FT CDS 13..2163 FT /codon_start=1 FT /gene="PA" FT /product="polymerase PA" FT /protein_id="QIJ23692.1" FT /translation="MEDFVRQCFNPMIVELAEKAMKEYGEDPKIETNKFAAICTHLEVC FT FMYSDFHFIDERGESIIVESGDPNALLKHRFEIIEGRDRIMAWTVVNSICNTTGIEKPK FT FLPDLYDYKENRFIEIGVTRREVHIYYLEKANKIKSEKTHIHIFSFTGEEMATKADYTL FT DEESRARIKTRLFTIRQEMASRSLWDSFRQSERGEETIEEKFEITGTMRRLADQSLPPN FT FSSLENFRAYVDGFEPNGCIEGKLSQMSKEVNAKIEPFLRTTPRPLRLPDGPLCHQRSK FT FLLMDALKLSIEDPSHEGEGIPLYDAIKCMKTFFGWKEPKIVKPHEKGVNPNYLMAWKQ FT VLAELQDIENEEKIPRTKNMKKTSQLKWALGENMAPEKVDFDDCKDVGDLKQYDSDEPE FT PRSLASWVQNEFNKACELTDSSWIELDEIGEDVAPIEHIASMRRNYFTAEVSHCRATEY FT IMKGVYINTALLNASCAAMDDFQLIPMISKCRTKEGRRKTNLYGFIIKGRSHLRNDTDV FT VNFVSMEFSLIDPRLEPHKWEKYCVLEIGDMLLRTAIGQVSRPMFLYVRTNGTSKIKMK FT WGMEMRRCLLQSLQQIESMIEAESSVKEKDMTKEFFENKSETWPIGESPRGVEEGSIGK FT VCRTLLAKSVFNSLYASPQLEGFSAESRKLLLIVQALRDNLEPGTFDLGGLYEAIEECL FT INDPWVLLNASWFNSFLTHALK" FT gene 13..712 FT /gene="PA-X" FT CDS join(13..582,584..712) FT /codon_start=1 FT /ribosomal_slippage FT /gene="PA-X" FT /product="PA-X protein" FT /protein_id="QIJ23693.1" FT /translation="MEDFVRQCFNPMIVELAEKAMKEYGEDPKIETNKFAAICTHLEVC FT FMYSDFHFIDERGESIIVESGDPNALLKHRFEIIEGRDRIMAWTVVNSICNTTGIEKPK FT FLPDLYDYKENRFIEIGVTRREVHIYYLEKANKIKSEKTHIHIFSFTGEEMATKADYTL FT DEESRARIKTRLFTIRQEMASRSLWDSFVSPKEAKKQLKKSLKLQELCAGLPTKVSHQT FT SPALKTSEPM" XX SQ Sequence 2208 BP; 743 A; 416 C; 516 G; 533 T; 0 other; tactgatcca aaatggaaga ctttgtgcga caatgcttca atccaatgat cgtcgagctt 60 gcggaaaagg caatgaaaga atatggggaa gaccccaaaa ttgaaactaa taagtttgct 120 gcaatttgca cacatttgga agtttgtttc atgtattcgg atttccattt cattgatgaa 180 cggggtgaat caataattgt agaatctggt gacccaaatg cactattgaa gcaccgattt 240 gagataattg aaggaagaga ccgaatcatg gcttggacag tggtgaacag tatatgtaac 300 acaacaggga tagagaagcc taaatttctt cctgatttgt atgattacaa agagaaccgg 360 ttcattgaaa ttggagtaac acggagagaa gttcacatat attacctaga gaaagccaac 420 aaaataaaat ctgagaagac acacattcac atcttttcat tcactggaga ggagatggcc 480 accaaagcgg actacactct tgacgaagaa agcagagcaa gaatcaaaac taggcttttc 540 actataagac aagaaatggc cagtaggagt ctatgggatt cctttcgtca gtccgaaaga 600 ggcgaagaaa caattgaaga aaagtttgaa attacaggaa ctatgcgcag gcttgccgac 660 caaagtctcc caccaaactt ctccagcctt gaaaacttca gagcctatgt agatggattc 720 gagccgaacg gctgcattga gggtaagctt tcccaaatgt caaaagaagt gaacgccaaa 780 attgaaccat tcttgaggac gacaccacgc cctctcagat tacctgatgg acctctttgc 840 catcagcggt caaagttcct gctgatggat gctctgaaat taagcattga agacccgagt 900 cacgaggggg aaggaatacc actatatgat gcaatcaaat gcatgaagac attctttggc 960 tggaaagagc ctaaaatagt caaaccacat gagaaaggcg taaatcccaa ttacctcatg 1020 gcttggaagc aggtgctagc agagctacag gacattgaaa atgaagagaa aatcccaagg 1080 acaaagaaca tgaagaaaac aagccaattg aagtgggcac tcggtgaaaa tatggcacct 1140 gaaaaagtgg actttgatga ctgtaaagat gttggagacc ttaaacagta tgacagtgat 1200 gagccagagc ccagatctct agcaagctgg gtccaaaatg aattcaataa ggcatgtgaa 1260 ttgactgatt caagctggat agaacttgat gaaataggag aagatgttgc cccaattgaa 1320 catatagcaa gcatgaggag gaactatttt acagcagaag tgtctcactg cagggctact 1380 gaatacataa tgaagggagt gtacataaat acggccttgc ttaatgcatc ctgtgcagcc 1440 atggatgact ttcagctgat tccaatgata agcaaatgta ggaccaaaga aggaagacgg 1500 aaaacaaacc tttatgggtt cattataaaa ggaaggtctc atttgagaaa tgatactgat 1560 gtggtgaact ttgtaagtat ggagttctca ctcattgatc caagactgga accacacaaa 1620 tgggaaaaat actgtgttct tgaaatagga gacatgctat tgaggactgc gataggtcaa 1680 gtgtcgaggc ccatgttcct atatgtgaga accaatggaa cctccaagat caagatgaaa 1740 tggggcatgg aaatgaggcg ctgccttctt caatctcttc aacagattga gagcatgatt 1800 gaagccgagt cttctgtcaa agagaaagac atgaccaagg aattctttga aaacaaatcg 1860 gaaacatggc caatcggaga atcacccagg ggagtggagg aaggctctat tggaaaagtg 1920 tgcagaacct tactggcaaa atctgtgttc aacagtctat atgcttctcc acaacttgag 1980 gggttttcgg ctgaatcaag aaaattgctt ctcattgttc aggcacttag ggacaacctg 2040 gaacctggaa cctttgatct tggggggcta tatgaagcaa tcgaggagtg cttgattaat 2100 gatccctggg ttttgcttaa tgcatcttgg ttcaactcct tcctcacaca tgcactgaag 2160 tagttgtggc aatgctacta tttgctatcc atattgtcca aaaaagta 2208 // ID MT167201; SV 1; linear; viral cRNA; STD; VRL; 1752 BP. XX AC MT167201; XX PR Project:PRJNA37813; XX DT 17-MAR-2020 (Rel. 144, Created) DT 17-MAR-2020 (Rel. 144, Last updated, Version 1) XX DE Influenza A virus (A/Alaska/60/2019(H1N1)) segment 4 hemagglutinin (HA) DE gene, complete cds. XX KW . XX OS Influenza A virus OC Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Insthoviricetes; OC Articulavirales; Orthomyxoviridae; Alphainfluenzavirus. XX RN [1] RP 1-1752 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT "Influenza Sequencing Activity group"; RL Unpublished. XX RN [2] RP 1-1752 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT ; RL Submitted (09-MAR-2020) to the INSDC. RL WHO Collaborating Center for Surveillance, Epidemiology and Control of RL Influenza, Influenza Division, Centers for Disease Control and Prevention, RL 1600 Clifton Road, N.E., Atlanta, GA 30333, USA XX DR MD5; c936549862bbdde9dffd4320ec463824. XX CC ##FluData-START## CC EPI_ISOLATE_ID :: EPI_ISL_409735 CC NAME :: A/Alaska/60/2019 CC TYPE :: H1N1 CC Segment_name :: HA CC HOST_AGE :: 6 CC HOST_GENDER :: F CC PASSAGE :: C1 (2020-01-15) CC LOCATION :: United States / Alaska CC COLLECT_DATE :: 19-Dec-2019 CC Lineage :: A(H1N1)pdm09 CC RESIST_TO_OSELTAMIVIR :: Sensitive CC RESIST_TO_ZANAMVIR :: Sensitive CC SPECIMEN_ID :: 359081 ORIGINAL CC SENDER_LAB :: Alaska State Virology Lab CC SEQLAB_SAMPLE_ID :: 3026054428 CC EPI_SEQUENCE_ID :: EPI1688680 CC ##FluData-END## XX FH Key Location/Qualifiers FH FT source 1..1752 FT /organism="Influenza A virus" FT /segment="4" FT /host="Homo sapiens" FT /strain="A/Alaska/60/2019" FT /serotype="H1N1" FT /mol_type="viral cRNA" FT /country="USA:Alaska" FT /collection_date="19-Dec-2019" FT /db_xref="taxon:11320" FT gene 21..1721 FT /gene="HA" FT CDS 21..1721 FT /codon_start=1 FT /gene="HA" FT /product="hemagglutinin" FT /function="receptor binding and fusion protein" FT /protein_id="QIJ23694.1" FT /translation="MKAILVVLLYTFTTANADTLCIGYHANNSTDTVDTVLEKNVTVTH FT SVNLLEDKHNGKLCKLRGVAPLHLGKCNIAGWILGNPECESLSTARSWSYIVETSNSDN FT GTCYPGDFINYEELREQLSSVSSFERFEIFPKTSSWPNHDSDKGVTAACPHAGAKSFYK FT NLIWLVKKGNSYPKLNQTYINDKGKEVLVLWGIHHPPTIAAQESLYQNADAYVFVGTSR FT YSKKFKPEIATRPKVRDQEGRMNYYWTLVEPGDKITFEATGNLVVPRYAFTMERDAGSG FT IIISDTPVHDCNTTCQTPEGAINTSLPFQNVHPITIGKCPKYVKSTKLRLATGLRNVPS FT IQSRGLFGAIAGFIEGGWTGMVDGWYGYHHQNEQGSGYAADLKSTQNAIDKITNKVNSV FT IEKMNTQFTAVGKEFNHLEKRIENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSN FT VKNLYEKVRNQLKNNAKEIGNGCFEFYHKCDNTCMESVKNGTYDYPKYSEEAKLNREKI FT DGVKLESTRIYQILAIYSTVASSLVLVVSLGAISFWMCSNGSLQCRICI" FT sig_peptide 21..71 FT /gene="HA" FT mat_peptide 72..1052 FT /gene="HA" FT /product="HA1" FT mat_peptide 1053..1718 FT /gene="HA" FT /product="HA2" XX SQ Sequence 1752 BP; 629 A; 326 C; 385 G; 412 T; 0 other; ggaaaacaaa agcaacaaaa atgaaggcaa tactagtagt tctgctgtat acatttacaa 60 ccgcaaatgc agacacatta tgtataggtt atcatgcgaa caattcaaca gacactgtag 120 acacagtact agaaaagaat gtaacagtaa cacactctgt caatcttctg gaagacaagc 180 ataacggaaa actatgcaaa ctaagagggg tagccccatt gcatttgggt aaatgtaaca 240 ttgctggctg gatcctggga aatccagagt gtgaatcact ctccacagca aggtcatggt 300 cctacattgt ggaaacatct aattcagaca atggaacgtg ttacccagga gatttcatca 360 attatgagga gctaagagag caattgagct cagtgtcatc atttgaaagg tttgaaatat 420 tccccaagac aagttcatgg cctaatcatg actcggacaa aggtgtaacg gcagcatgtc 480 ctcacgctgg agcaaaaagc ttctacaaaa acttgatatg gttggttaaa aaaggaaatt 540 catacccaaa gctcaaccaa acctacatta atgataaagg gaaagaagtc ctcgtgctgt 600 ggggcattca ccatccacct actattgctg cccaagaaag tctctatcag aatgcagatg 660 catatgtttt tgtggggaca tcaagataca gcaagaagtt caagccggaa atagcaacaa 720 gacccaaagt gagggatcaa gaagggagaa tgaactatta ctggacacta gtagaaccgg 780 gagacaaaat aacattcgaa gcaactggaa atctagtagt accgagatat gcattcacaa 840 tggaaagaga tgctggatct ggtattatca tttcagatac accagtccac gattgcaata 900 caacttgtca gacacccgag ggtgctataa acaccagcct cccatttcag aatgtacatc 960 cgattacaat tgggaaatgt ccaaagtatg taaaaagcac aaaattgaga ctggccacag 1020 gattgaggaa tgtcccgtct attcaatcta gaggcctatt cggggccatt gctggcttca 1080 ttgaaggggg gtggacaggg atggtagatg gatggtacgg ttatcaccat caaaatgagc 1140 aggggtcagg atatgcagcc gatctgaaga gcacacaaaa tgccattgat aagattacta 1200 acaaagtaaa ttctgttatt gaaaagatga atacacagtt cacagcagtg ggtaaagagt 1260 tcaaccacct tgaaaaaaga atagagaatc taaataaaaa agttgatgat ggtttcctgg 1320 acatttggac ttacaatgcc gaactgttgg ttctactgga aaacgaaaga actttggact 1380 atcacgattc aaatgtgaag aacttgtatg aaaaagtaag aaaccagtta aaaaacaatg 1440 ccaaggaaat tggaaacggc tgctttgaat tttaccacaa atgcgacaac acatgcatgg 1500 aaagtgtcaa gaatgggact tatgactacc caaaatactc agaggaagca aaattaaaca 1560 gagaaaaaat agatggagta aagctggaat caacaaggat ctaccagatt ttggcgatct 1620 attcaactgt tgccagttca ttggtactgg tagtctccct gggggcaatc agcttctgga 1680 tgtgctctaa tgggtctcta cagtgtagaa tatgtattta acattaggat ttcagaatca 1740 tgagaaaaac ac 1752 // ID MT167202; SV 1; linear; viral cRNA; STD; VRL; 1540 BP. XX AC MT167202; XX PR Project:PRJNA37813; XX DT 17-MAR-2020 (Rel. 144, Created) DT 17-MAR-2020 (Rel. 144, Last updated, Version 1) XX DE Influenza A virus (A/Alaska/60/2019(H1N1)) segment 5 nucleocapsid protein DE (NP) gene, complete cds. XX KW . XX OS Influenza A virus OC Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Insthoviricetes; OC Articulavirales; Orthomyxoviridae; Alphainfluenzavirus. XX RN [1] RP 1-1540 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT "Influenza Sequencing Activity group"; RL Unpublished. XX RN [2] RP 1-1540 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT ; RL Submitted (09-MAR-2020) to the INSDC. RL WHO Collaborating Center for Surveillance, Epidemiology and Control of RL Influenza, Influenza Division, Centers for Disease Control and Prevention, RL 1600 Clifton Road, N.E., Atlanta, GA 30333, USA XX DR MD5; b5f3a3650b7f05f2f3514abe32284901. XX CC ##FluData-START## CC EPI_ISOLATE_ID :: EPI_ISL_409735 CC NAME :: A/Alaska/60/2019 CC TYPE :: H1N1 CC Segment_name :: NP CC HOST_AGE :: 6 CC HOST_GENDER :: F CC PASSAGE :: C1 (2020-01-15) CC LOCATION :: United States / Alaska CC COLLECT_DATE :: 19-Dec-2019 CC Lineage :: A(H1N1)pdm09 CC RESIST_TO_OSELTAMIVIR :: Sensitive CC RESIST_TO_ZANAMVIR :: Sensitive CC SPECIMEN_ID :: 359081 ORIGINAL CC SENDER_LAB :: Alaska State Virology Lab CC SEQLAB_SAMPLE_ID :: 3026054428 CC EPI_SEQUENCE_ID :: EPI1688673 CC ##FluData-END## XX FH Key Location/Qualifiers FH FT source 1..1540 FT /organism="Influenza A virus" FT /segment="5" FT /host="Homo sapiens" FT /strain="A/Alaska/60/2019" FT /serotype="H1N1" FT /mol_type="viral cRNA" FT /country="USA:Alaska" FT /collection_date="19-Dec-2019" FT /db_xref="taxon:11320" FT gene 34..1530 FT /gene="NP" FT CDS 34..1530 FT /codon_start=1 FT /gene="NP" FT /product="nucleocapsid protein" FT /protein_id="QIJ23695.1" FT /translation="MASQGTKRSYEQMETGGERQDTTEIRASVGRMIGGIGRFYIQMCT FT ELKLSDYDGRLIQNSITIERMVLSSFDERRNKYLEEHPSAGKDPKKTGGPIYRRIDGKW FT TRELILYDKEEIRRVWRQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRM FT CSLMQGSTLPRRSGAAGAAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTRVAYERM FT CNILKGKFQTAAQRAMMDQVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVY FT GLAVASGHDFEREGYSLVGIDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFED FT LRVSSFIRGKKVIPRGKLSTRGVQIASNENVETMDSNTLELRSRYWAIRTRSGGNTNQQ FT KASAGQISVQPTFSVQRNLPFERATIMAAFSGNNEGRTSDMRTEIIRMMESAKPEDLSF FT QGRGVFELSDEKATNPIVPSFDMSNEGSYFFGDNAEEYDN" XX SQ Sequence 1540 BP; 529 A; 295 C; 389 G; 327 T; 0 other; gtagataatc actcaatgag tgacatcgaa gctatggcgt ctcaaggcac caaacgatca 60 tatgaacaaa tggagactgg tggggagcgc caggatacca cagaaatcag agcatctgtt 120 ggaagaatga ttggtggaat cgggagattc tacatccaaa tgtgcactga actaaaactc 180 agtgattatg atggacgact aatccagaac agcataacaa tagagaggat ggtgctttct 240 tcttttgatg agagaagaaa taaataccta gaagagcatc caagtgctgg gaaggaccct 300 aagaaaacag gaggacccat ctatagaaga atagacggaa aatggacaag agaactcatc 360 ctttatgaca aagaagaaat aagaagagtt tggcgccaag caaacaatgg cgaagatgca 420 acagcaggtc ttactcatat catgatttgg cattccaatc tgaatgatgc cacatatcag 480 aggacaagag cacttgttcg cactggaatg gatcccagaa tgtgctctct aatgcaaggt 540 tcaacacttc ccagaaggtc tggtgccgca ggtgctgcag taaaaggagt tggaacaata 600 gctatggagt taatcagaat gataaaacgt ggaatcaatg accgaaattt ctggaggggt 660 gaaaatggaa gaaggacaag agttgcttat gaaagaatgt gcaatatcct caaaggaaaa 720 tttcaaacag ctgcccagag ggcaatgatg gatcaagtaa gagaaagtcg aaacccagga 780 aacgctgaga ttgaagacct cattttcctg gcacggtcag cactcattct gagaggatca 840 gttgcacata aatcctgcct gcctgcttgt gtgtatgggc ttgcagtagc aagtggccat 900 gactttgaaa gggaagggta ctcactggtc gggatagacc cattcaaatt actccaaaac 960 agtcaagtgg tcagcctgat gagaccaaat gaaaatccag ctcacaagag tcaattggta 1020 tggatggcat gccactctgc tgcatttgaa gatttaagag tatcaagttt cataagagga 1080 aagaaagtga tcccaagagg aaagctttcc acaagagggg ttcagattgc ttcaaatgag 1140 aatgtggaaa ccatggactc caataccctg gaactaagaa gcagatactg ggccataaga 1200 accagaagtg gaggaaatac caatcaacag aaggcatctg caggccagat cagtgtgcag 1260 cctacattct cagtgcagcg aaatctccct tttgaaagag caaccattat ggcagcattc 1320 agcgggaaca atgaaggacg gacatccgac atgcgaacag aaattataag aatgatggaa 1380 agtgcaaagc cagaggattt gtccttccag gggcggggag tcttcgagct ctcggacgaa 1440 aaggcaacga acccgatcgt gccttccttt gacatgagta atgaagggtc ttatttcttc 1500 ggagacaatg cagaggagta tgacaattga agaaaaatac 1540 // ID MT167203; SV 1; linear; viral cRNA; STD; VRL; 1430 BP. XX AC MT167203; XX PR Project:PRJNA37813; XX DT 17-MAR-2020 (Rel. 144, Created) DT 17-MAR-2020 (Rel. 144, Last updated, Version 1) XX DE Influenza A virus (A/Alaska/60/2019(H1N1)) segment 6 neuraminidase (NA) DE gene, complete cds. XX KW . XX OS Influenza A virus OC Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Insthoviricetes; OC Articulavirales; Orthomyxoviridae; Alphainfluenzavirus. XX RN [1] RP 1-1430 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT "Influenza Sequencing Activity group"; RL Unpublished. XX RN [2] RP 1-1430 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT ; RL Submitted (09-MAR-2020) to the INSDC. RL WHO Collaborating Center for Surveillance, Epidemiology and Control of RL Influenza, Influenza Division, Centers for Disease Control and Prevention, RL 1600 Clifton Road, N.E., Atlanta, GA 30333, USA XX DR MD5; 10251abd127efa019467126dc1b30c5e. XX CC ##FluData-START## CC EPI_ISOLATE_ID :: EPI_ISL_409735 CC NAME :: A/Alaska/60/2019 CC TYPE :: H1N1 CC Segment_name :: NA CC HOST_AGE :: 6 CC HOST_GENDER :: F CC PASSAGE :: C1 (2020-01-15) CC LOCATION :: United States / Alaska CC COLLECT_DATE :: 19-Dec-2019 CC Lineage :: A(H1N1)pdm09 CC RESIST_TO_OSELTAMIVIR :: Sensitive CC RESIST_TO_ZANAMVIR :: Sensitive CC SPECIMEN_ID :: 359081 ORIGINAL CC SENDER_LAB :: Alaska State Virology Lab CC SEQLAB_SAMPLE_ID :: 3026054428 CC EPI_SEQUENCE_ID :: EPI1688679 CC ##FluData-END## XX FH Key Location/Qualifiers FH FT source 1..1430 FT /organism="Influenza A virus" FT /segment="6" FT /host="Homo sapiens" FT /strain="A/Alaska/60/2019" FT /serotype="H1N1" FT /mol_type="viral cRNA" FT /country="USA:Alaska" FT /collection_date="19-Dec-2019" FT /db_xref="taxon:11320" FT gene 9..1418 FT /gene="NA" FT CDS 9..1418 FT /codon_start=1 FT /gene="NA" FT /product="neuraminidase" FT /protein_id="QIJ23696.1" FT /translation="MNPNQKIITIGSICMTIGMANLILQIGNIISIWVSHSIQTGNQSQ FT IETCNKNVITYENNTWVNQTYVNISNNNSAARQSVASVKLAGNSSLCPVSGWAIYSKDN FT SVRIGSKGDVFVIREPFISCSPLECRTFFLTQGALLNDKHSNGTIKDRSPYRTLMSCPI FT GEVPSPYNSRFESVAWSASACHDGTNWLTIGISGPDSGAVAVLKYNGIITDTIKSWRNN FT ILRTQESECACVNGSCFTIMTDGPSDGQASYKIFRIEKGKIIKSVEMKAPNYHYEECSC FT YPDSSEITCVCRDNWHGSNRPWVSFNQNLEYQMGYICSGVFGDNPRPNDKTGSCGPVSS FT NGANGVKGFSFKYGNGVWIGRTKSISSRKGFEMIWDPNGWTGTDNKFSKKQDIVGINEW FT SGYSGSFVQHPELTGLNCIRPCFWVELIRGRPEENTIWTSGSSISFCGVDSDIVGWSWP FT DGAELPFTIDK" XX SQ Sequence 1430 BP; 465 A; 264 C; 332 G; 369 T; 0 other; agtttaaaat gaatccaaac caaaagataa taaccattgg ctctatctgt atgacaattg 60 gaatggctaa cttaatatta caaattggaa acataatctc aatatgggtt agccactcaa 120 ttcaaaccgg aaaccaaagc cagatcgaaa catgcaataa aaacgtcatt acttatgaaa 180 acaatacttg ggtaaatcag acatatgtta acatcagcaa caacaactct gctgctagac 240 agtcagtggc ttccgtgaaa ttagcgggca attcctctct ctgccctgtc agtggatggg 300 ctatatacag taaagacaac agtgtaagaa tcggttccaa gggggatgtg tttgtcataa 360 gggaaccatt catatcatgc tctcccttgg aatgcagaac cttcttcttg actcaagggg 420 ctttgctaaa tgacaaacat tccaatggaa ccattaaaga cagaagccca tatcgaaccc 480 taatgagctg tcctattggt gaagttccct ctccatacaa ctcaagattt gagtcagtcg 540 cttggtcagc aagtgcttgt catgatggca ccaattggct aacaattgga atttctggcc 600 cagacagtgg ggcagtggct gtgttaaaat acaatggcat aataacagac actatcaaga 660 gttggaggaa caatatattg agaacacaag agtctgaatg tgcatgtgta aatggttctt 720 gctttaccat aatgaccgat ggaccaagtg atggacaggc ctcatacaaa atcttcagaa 780 tagaaaaggg aaagataatc aaatcagtcg aaatgaaagc ccctaattat cactatgagg 840 aatgctcctg ttaccctgat tctagtgaaa tcacatgtgt gtgcagggat aactggcatg 900 gctcgaatcg accgtgggtg tctttcaacc agaatctgga ataccagatg ggatacatat 960 gcagtggggt tttcggagac aatccacgcc ctaatgataa gacaggcagt tgtggtccag 1020 tatcgtctaa tggagcaaat ggggtaaaag gattttcatt caaatacggc aatggtgttt 1080 ggatagggag aactaagagc attagttcaa gaaaaggttt tgagatgatt tgggatccga 1140 atggatggac tgggactgac aataaattct caaaaaagca agatatcgta ggaataaatg 1200 agtggtcagg gtatagcggg agttttgttc agcatccaga actaacaggg ctgaattgta 1260 taagaccttg cttctgggtt gaactaataa gaggacgacc cgaagagaac acaatctgga 1320 ctagtgggag cagcatatcc ttttgtggtg tagacagtga cattgtgggt tggtcttggc 1380 cagacggtgc tgagttgcca tttaccattg acaagtaatt tgttcaaaaa 1430 // ID MT167204; SV 1; linear; viral cRNA; STD; VRL; 1002 BP. XX AC MT167204; XX PR Project:PRJNA37813; XX DT 17-MAR-2020 (Rel. 144, Created) DT 17-MAR-2020 (Rel. 144, Last updated, Version 1) XX DE Influenza A virus (A/Alaska/60/2019(H1N1)) segment 7 matrix protein 2 (M2) DE and matrix protein 1 (M1) genes, complete cds. XX KW . XX OS Influenza A virus OC Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Insthoviricetes; OC Articulavirales; Orthomyxoviridae; Alphainfluenzavirus. XX RN [1] RP 1-1002 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT "Influenza Sequencing Activity group"; RL Unpublished. XX RN [2] RP 1-1002 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT ; RL Submitted (09-MAR-2020) to the INSDC. RL WHO Collaborating Center for Surveillance, Epidemiology and Control of RL Influenza, Influenza Division, Centers for Disease Control and Prevention, RL 1600 Clifton Road, N.E., Atlanta, GA 30333, USA XX DR MD5; 450785b1294558cce6ba4fa395c2af82. XX CC ##FluData-START## CC EPI_ISOLATE_ID :: EPI_ISL_409735 CC NAME :: A/Alaska/60/2019 CC TYPE :: H1N1 CC Segment_name :: M CC HOST_AGE :: 6 CC HOST_GENDER :: F CC PASSAGE :: C1 (2020-01-15) CC LOCATION :: United States / Alaska CC COLLECT_DATE :: 19-Dec-2019 CC Lineage :: A(H1N1)pdm09 CC RESIST_TO_OSELTAMIVIR :: Sensitive CC RESIST_TO_ZANAMVIR :: Sensitive CC SPECIMEN_ID :: 359081 ORIGINAL CC SENDER_LAB :: Alaska State Virology Lab CC SEQLAB_SAMPLE_ID :: 3026054428 CC EPI_SEQUENCE_ID :: EPI1688675 CC ##FluData-END## XX FH Key Location/Qualifiers FH FT source 1..1002 FT /organism="Influenza A virus" FT /segment="7" FT /host="Homo sapiens" FT /strain="A/Alaska/60/2019" FT /serotype="H1N1" FT /mol_type="viral cRNA" FT /country="USA:Alaska" FT /collection_date="19-Dec-2019" FT /db_xref="taxon:11320" FT gene 14..995 FT /gene="M2" FT CDS join(14..39,728..995) FT /codon_start=1 FT /gene="M2" FT /product="matrix protein 2" FT /protein_id="QIJ23698.1" FT /translation="MSLLTEVETPTRSEWECRCSGSNDPLVIAANIIGILHLILWITDR FT LFFKCIYRRFKYGLKRGPSTEGVPDSMREEYQQEQQSAVDVDDGHFVNIELE" FT gene 14..772 FT /gene="M1" FT CDS 14..772 FT /codon_start=1 FT /gene="M1" FT /product="matrix protein 1" FT /protein_id="QIJ23697.1" FT /translation="MSLLTEVETYVLSIIPSGPLKAEIAQRLESVFAGKNTDLEALMEW FT LKTRPILSPLTKGILGFVFTLTVPSERGLQRRRFIQNALNGNGDPNNMDRAVKLYKKLK FT REITFHGAKEVSLSYSTGALASCMGLIYNRMGTVTTEAAFGLVCATCEQIADSQHRSHR FT QMATTTNPLIRHENRMVLASTTAKAMEQVAGSSEQAAEAMEVANKTRQMVHAMRTIGTH FT PSSSAGLRDDLLENLQAYQKRMGVQMQRFK" XX SQ Sequence 1002 BP; 301 A; 209 C; 252 G; 240 T; 0 other; tagatgttta aagatgagtc ttctaaccga ggtcgaaacg tacgttcttt ctatcatccc 60 gtcaggcccc ctcaaagccg agatcgcaca gagactggaa agtgtctttg caggaaagaa 120 cacagatctt gaggctctca tggaatggct aaagacaaga ccaatcttgt cacctctgac 180 taagggaatt ttaggatttg tgttcacgct caccgtgccc agtgagcgag gactgcagcg 240 tagacgcttt atccaaaatg ccctaaatgg aaatggggac ccgaacaaca tggatagagc 300 agttaaacta tacaagaaac tcaaaagaga aataacgttc catggggcca aggaggtgtc 360 actaagctat tcaactggtg cacttgcaag ttgcatgggc ctcatataca acaggatggg 420 aacagtgacc acagaagctg ctttcggtct agtttgtgcc acttgtgaac agattgctga 480 ttcacagcat cggtctcaca gacaaatggc tactaccaca aatccactaa tcaggcatga 540 aaacagaatg gtgctggcta gcactacggc aaaggctatg gaacaggtgg ctggatcgag 600 tgaacaggca gcggaggcca tggaggttgc taataagact aggcagatgg tacatgcaat 660 gagaactatt ggaactcatc ctagctccag tgctggtcta agagatgacc ttcttgaaaa 720 tttgcaggcc taccagaagc gaatgggagt gcagatgcag cggttcaaat gatcctctcg 780 tcattgcagc aaacatcatt gggatcttgc acctgatatt gtggattact gatcgtcttt 840 ttttcaaatg catttatcgt cgctttaaat acggtttgaa aagagggcct tctacggaag 900 gagtgcctga ttccatgagg gaagaatatc aacaggagca gcagagtgct gtggatgttg 960 acgatggtca ttttgtcaac atagagctag agtaaaaaac ta 1002 // ID MT167205; SV 1; linear; viral cRNA; STD; VRL; 865 BP. XX AC MT167205; XX PR Project:PRJNA37813; XX DT 17-MAR-2020 (Rel. 144, Created) DT 17-MAR-2020 (Rel. 144, Last updated, Version 1) XX DE Influenza A virus (A/Alaska/60/2019(H1N1)) segment 8 nuclear export protein DE (NEP) and nonstructural protein 1 (NS1) genes, complete cds. XX KW . XX OS Influenza A virus OC Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Insthoviricetes; OC Articulavirales; Orthomyxoviridae; Alphainfluenzavirus. XX RN [1] RP 1-865 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT "Influenza Sequencing Activity group"; RL Unpublished. XX RN [2] RP 1-865 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT ; RL Submitted (09-MAR-2020) to the INSDC. RL WHO Collaborating Center for Surveillance, Epidemiology and Control of RL Influenza, Influenza Division, Centers for Disease Control and Prevention, RL 1600 Clifton Road, N.E., Atlanta, GA 30333, USA XX DR MD5; 6966992d5cfb1d7d0934ffaff6151f64. XX CC ##FluData-START## CC EPI_ISOLATE_ID :: EPI_ISL_409735 CC NAME :: A/Alaska/60/2019 CC TYPE :: H1N1 CC Segment_name :: NS CC HOST_AGE :: 6 CC HOST_GENDER :: F CC PASSAGE :: C1 (2020-01-15) CC LOCATION :: United States / Alaska CC COLLECT_DATE :: 19-Dec-2019 CC Lineage :: A(H1N1)pdm09 CC RESIST_TO_OSELTAMIVIR :: Sensitive CC RESIST_TO_ZANAMVIR :: Sensitive CC SPECIMEN_ID :: 359081 ORIGINAL CC SENDER_LAB :: Alaska State Virology Lab CC SEQLAB_SAMPLE_ID :: 3026054428 CC EPI_SEQUENCE_ID :: EPI1688674 CC ##FluData-END## XX FH Key Location/Qualifiers FH FT source 1..865 FT /organism="Influenza A virus" FT /segment="8" FT /host="Homo sapiens" FT /strain="A/Alaska/60/2019" FT /serotype="H1N1" FT /mol_type="viral cRNA" FT /country="USA:Alaska" FT /collection_date="19-Dec-2019" FT /db_xref="taxon:11320" FT gene 15..852 FT /gene="NEP" FT /gene_synonym="NS2" FT CDS join(15..44,517..852) FT /codon_start=1 FT /gene="NEP" FT /gene_synonym="NS2" FT /product="nuclear export protein" FT /note="nonstructural protein 2" FT /protein_id="QIJ23700.1" FT /translation="MESNTMSSFQDILMRMSKMQLGSSSEDLSGMVTRFESLKIYRDSL FT GEAVMRMGDLHYLQSRNEKWREQLGQKFEEIRWLIEEIRHRLKATENSFEQITFMQALQ FT LLLEVEQEIRAFSFQLI" FT gene 15..674 FT /gene="NS1" FT CDS 15..674 FT /codon_start=1 FT /gene="NS1" FT /product="nonstructural protein 1" FT /protein_id="QIJ23699.1" FT /translation="MESNTMSSFQVDCFLWHIRKRFADNGLGDAPFLDRLRRDQKSLKG FT RGNTLGLDIKTATLVGKQIVEWILKEEFSETLRMAIASVPTSRYISDMTLEEMSRDWFM FT LMPRQKIIGPLCVRLDQAVMDKNIVLEANFSVIFNRLETLVLLRAFTEEGTIVGEISPL FT PSLPGHTYEDVKNAVGVLIGGLEWNGNTVRVSENIQRFAWRSCDENGRPSLPPEQK" XX SQ Sequence 865 BP; 279 A; 164 C; 206 G; 216 T; 0 other; gtgacaaaaa cataatggaa tccaacacca tgtcaagctt tcaggtagac tgttttcttt 60 ggcatattcg caagcgattt gcagacaatg gattgggtga tgccccattc cttgatcggc 120 tacgccgaga tcaaaagtcc ttaaaaggaa gaggcaacac ccttggcctc gacatcaaaa 180 cagccactct tgttgggaaa caaattgtgg aatggatttt gaaagaggaa ttcagcgaga 240 cacttagaat ggcaattgca tctgtaccta cttcgcgtta catttctgac atgaccctcg 300 aggaaatgtc acgagactgg ttcatgctta tgcctaggca aaagataata ggccctcttt 360 gcgtgcgatt ggaccaggcg gtcatggata agaacatagt actggaagca aacttcagtg 420 taatcttcaa ccgattagag accttggtac tactaagggc tttcactgag gagggaacaa 480 tagttggaga aatttcacca ttaccttctc ttccaggaca tacttatgag gatgtcaaaa 540 atgcagttgg ggtcctcatc ggaggacttg agtggaatgg taacacggtt cgagtctctg 600 aaaatataca gagattcgct tggagaagct gtgatgagaa tgggagacct tcactacctc 660 cagagcagaa atgagaagtg gcgggaacaa ttgggacaga aatttgagga aataaggtgg 720 ttaattgaag aaatacgaca cagattgaaa gcgacagaga atagtttcga acaaataaca 780 tttatgcaag ccttacaact actgcttgaa gtagagcaag agataagagc tttctcgttt 840 cagcttattt aatgataaaa aacac 865 // ID MT167206; SV 1; linear; viral cRNA; STD; VRL; 2316 BP. XX AC MT167206; XX PR Project:PRJNA37813; XX DT 17-MAR-2020 (Rel. 144, Created) DT 17-MAR-2020 (Rel. 144, Last updated, Version 1) XX DE Influenza A virus (A/Alaska/61/2019(H1N1)) segment 1 polymerase PB2 (PB2) DE gene, complete cds. XX KW . XX OS Influenza A virus OC Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Insthoviricetes; OC Articulavirales; Orthomyxoviridae; Alphainfluenzavirus. XX RN [1] RP 1-2316 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT "Influenza Sequencing Activity group"; RL Unpublished. XX RN [2] RP 1-2316 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT ; RL Submitted (09-MAR-2020) to the INSDC. RL WHO Collaborating Center for Surveillance, Epidemiology and Control of RL Influenza, Influenza Division, Centers for Disease Control and Prevention, RL 1600 Clifton Road, N.E., Atlanta, GA 30333, USA XX DR MD5; 2767c3276d520b0b64966e297ad7f1d3. XX CC ##FluData-START## CC EPI_ISOLATE_ID :: EPI_ISL_409218 CC NAME :: A/Alaska/61/2019 CC TYPE :: H1N1 CC Segment_name :: PB2 CC HOST_AGE :: 47 CC HOST_GENDER :: F CC PASSAGE :: C1 (2020-01-15) CC LOCATION :: United States / Alaska CC COLLECT_DATE :: 20-Dec-2019 CC Lineage :: A(H1N1)pdm09 CC RESIST_TO_OSELTAMIVIR :: Sensitive CC RESIST_TO_ZANAMVIR :: Sensitive CC SPECIMEN_ID :: 359140 ORIGINAL CC CHARACTERIZATION :: A/BRISBANE/02/2018-LIKE (H1N1)pdm09 CC SENDER_LAB :: Alaska State Virology Lab CC SEQLAB_SAMPLE_ID :: 3026054430 CC EPI_SEQUENCE_ID :: EPI1684588 CC ##FluData-END## XX FH Key Location/Qualifiers FH FT source 1..2316 FT /organism="Influenza A virus" FT /segment="1" FT /host="Homo sapiens" FT /strain="A/Alaska/61/2019" FT /serotype="H1N1" FT /mol_type="viral cRNA" FT /country="USA:Alaska" FT /collection_date="20-Dec-2019" FT /db_xref="taxon:11320" FT gene 16..2295 FT /gene="PB2" FT CDS 16..2295 FT /codon_start=1 FT /gene="PB2" FT /product="polymerase PB2" FT /protein_id="QIJ23701.1" FT /translation="MERIKELRDLMSQSRTREILTKTTVDHMAIIKKYTSGRQEKNPAL FT RMKWMMAMKYPITADKRIMDIIPERNEQGQTLWSKINDAGSDRVMVSPLAVTWWNRNGP FT TTSTVHYPKVYKTYFEKVERLKHGTFGPVHFRNQVKIRRRVDTNPGHADLSAKEAQDVI FT MEVVFPNEVGARILTSESQLAITKEKKEELQNCKIAPLMVAYMLERELVRKTRFLPVAG FT GTSSVYIEVLHLTQGTCWEQMYTPGGEVRNDDVDQSLIIAARNIVRRAAVSADPLASLL FT EMCHSTQIGGVKMVDILKQNPTEEQAVDICKAAIGLRISSSFSFGGFTFKRTSGSSVKK FT EEEMLTGNLQTLKLRVHEGYEEFTMVGRRATAILRKATRRLIQLIVSGRDEQSIAEAII FT VAMVFSQEDCMIKAVRGDLNFVNRANQRLNPMHQLLRHFQKDAKVLFQNWGIETIDNVM FT GMIGILPDMTPSTEMSLRGIRVSKMGVDEYSSTERVVVSIDRFLRVRDQRGNVLLSPEE FT VSETQGTEKLTITYSSSMMWEINGPESVLVNTYQWIIRNWEIVKIQWSQDPTMLYNKME FT FEPFQSLVPKATRSRYSGFVRTLFQQMRDVLGTFDTVQIIKLLPFAAAPPEQSRMQFSS FT LTVNVRGSGLRILVRGNSPVFNYNKATKRLTILGKDAGALNEDPDEGTSGVESAVLRGF FT LILGKEDRRYGPALSINELSNLAKGEKANVLIGQGDIVLVMKRKRDSSILTDSQTATKR FT IRMAIN" XX SQ Sequence 2316 BP; 796 A; 433 C; 582 G; 505 T; 0 other; tcaaatatat tcaatatgga gagaataaaa gagctgagag atctaatgtc gcagtcccgc 60 actcgcgaga tactcactaa gaccactgtg gaccatatgg ccatcatcaa aaagtacaca 120 tcgggaaggc aagagaagaa ccccgcgctc aggatgaagt ggatgatggc aatgaaatac 180 ccaattacgg cagacaagag aataatggac ataatcccag agaggaatga acaaggacaa 240 accctctgga gcaaaataaa cgatgctgga tcagaccgag tgatggtatc acctctggca 300 gtaacatggt ggaataggaa tggtccaaca acaagtacag ttcattaccc taaggtatat 360 aaaacttatt tcgaaaaggt cgaaaggttg aaacatggta ccttcggccc tgtccacttc 420 agaaatcaag ttaaaataag gaggagagtt gatacaaacc ctggccatgc agatctcagt 480 gccaaggagg cacaggatgt gattatggaa gttgttttcc caaatgaagt gggggcaaga 540 atactgacat cagagtcaca gctggcaata acaaaagaga agaaagaaga gctccagaat 600 tgtaaaattg ctcccttgat ggtggcgtac atgctagaaa gagaattggt ccgtaaaaca 660 aggtttctcc cagtagccgg tgggacaagc agtgtttata ttgaggtgtt gcacttgacc 720 caagggacgt gctgggagca gatgtacact ccaggaggag aagtgagaaa tgatgatgtt 780 gaccaaagct tgattatcgc tgctagaaac atagtaagaa gagcagcagt gtcagcagac 840 ccattagcat ctctcttgga aatgtgccac agcacacaga ttggaggtgt gaagatggtg 900 gacatcctta aacagaatcc aactgaggag caagccgtag acatatgcaa ggcagcaata 960 gggttgagga tcagctcatc tttcagtttt ggtgggttca ctttcaaaag gacaagcgga 1020 tcatcagtca agaaagaaga agaaatgcta acgggcaacc tccaaacact gaaattaaga 1080 gtacatgaag ggtatgaaga attcacaatg gttgggagaa gagcaacagc tattctcaga 1140 aaggcaacca ggagattgat ccaattaata gtaagcggga gagacgagca gtcaatagct 1200 gaagcaataa ttgtggccat ggtattctca caagaggatt gcatgatcaa agcagttagg 1260 ggtgatctga actttgtcaa tagggcaaac cagagactga atcccatgca ccaactcttg 1320 aggcatttcc aaaaagatgc aaaagtgctt ttccagaact ggggaattga aaccatcgac 1380 aatgtgatgg gaatgatcgg aatactgccc gacatgaccc caagcacgga gatgtcactg 1440 agaggaataa gagtcagcaa gatgggagta gatgaatact ccagcacgga gagagtggta 1500 gtgagtattg accgattttt gagggtcaga gatcaaagag gaaacgtact attgtctccc 1560 gaagaagtca gtgaaacaca aggaactgag aagttgacaa taacttattc gtcatcaatg 1620 atgtgggaaa tcaacggccc tgagtcagtg ctagtcaaca cttatcaatg gataatcaga 1680 aactgggaaa ttgtgaaaat tcaatggtca caagacccca caatgttata caacaaaatg 1740 gaatttgaac catttcagtc tcttgttcct aaggcaacca gaagccggta cagtggattc 1800 gtaaggacac tgttccagca aatgagggat gtgcttggga catttgacac tgtccaaata 1860 ataaaacttc tcccctttgc tgctgctcca ccagaacaga gcaggatgca attttcttca 1920 ttaactgtga atgtgagagg atcagggtta aggatactgg taagaggcaa ttctccagta 1980 ttcaattaca acaaggcaac caaacgactt acgattcttg gaaaggatgc aggtgcattg 2040 aatgaagatc cagatgaagg cacatctggg gtggagtctg ctgtcctgag aggattcctc 2100 attttaggca aagaagacag gagatatggc ccagcattaa gcatcaatga actgagcaat 2160 cttgcaaaag gagagaaagc taatgtgcta attgggcagg gagacatagt tttggtaatg 2220 aaacgaaaac gggactctag catacttact gatagccaga cagcgaccaa aagaattcgg 2280 atggccatca attagtgtcg aattgtttaa aaacga 2316 // ID MT167207; SV 1; linear; viral cRNA; STD; VRL; 2316 BP. XX AC MT167207; XX PR Project:PRJNA37813; XX DT 17-MAR-2020 (Rel. 144, Created) DT 17-MAR-2020 (Rel. 144, Last updated, Version 1) XX DE Influenza A virus (A/Alaska/61/2019(H1N1)) segment 2 polymerase PB1 (PB1) DE gene, complete cds; and nonfunctional PB1-F2 protein (PB1-F2) gene, DE complete sequence. XX KW . XX OS Influenza A virus OC Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Insthoviricetes; OC Articulavirales; Orthomyxoviridae; Alphainfluenzavirus. XX RN [1] RP 1-2316 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT "Influenza Sequencing Activity group"; RL Unpublished. XX RN [2] RP 1-2316 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT ; RL Submitted (09-MAR-2020) to the INSDC. RL WHO Collaborating Center for Surveillance, Epidemiology and Control of RL Influenza, Influenza Division, Centers for Disease Control and Prevention, RL 1600 Clifton Road, N.E., Atlanta, GA 30333, USA XX DR MD5; af9f3526c6dd937d464df8ada013954a. XX CC ##FluData-START## CC EPI_ISOLATE_ID :: EPI_ISL_409218 CC NAME :: A/Alaska/61/2019 CC TYPE :: H1N1 CC Segment_name :: PB1 CC HOST_AGE :: 47 CC HOST_GENDER :: F CC PASSAGE :: C1 (2020-01-15) CC LOCATION :: United States / Alaska CC COLLECT_DATE :: 20-Dec-2019 CC Lineage :: A(H1N1)pdm09 CC RESIST_TO_OSELTAMIVIR :: Sensitive CC RESIST_TO_ZANAMVIR :: Sensitive CC SPECIMEN_ID :: 359140 ORIGINAL CC CHARACTERIZATION :: A/BRISBANE/02/2018-LIKE (H1N1)pdm09 CC SENDER_LAB :: Alaska State Virology Lab CC SEQLAB_SAMPLE_ID :: 3026054430 CC EPI_SEQUENCE_ID :: EPI1684589 CC ##FluData-END## XX FH Key Location/Qualifiers FH FT source 1..2316 FT /organism="Influenza A virus" FT /segment="2" FT /host="Homo sapiens" FT /strain="A/Alaska/61/2019" FT /serotype="H1N1" FT /mol_type="viral cRNA" FT /country="USA:Alaska" FT /collection_date="20-Dec-2019" FT /db_xref="taxon:11320" FT gene 13..2286 FT /gene="PB1" FT CDS 13..2286 FT /codon_start=1 FT /gene="PB1" FT /product="polymerase PB1" FT /protein_id="QIJ23702.1" FT /translation="MDVNPTLLFLKIPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNR FT THQYSEKGKWTTNTETGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFE FT NSCLETMEVVQQTRVDKLTQGRQTYDWTLNRNQPAATALANTIEVFRSNDLTANESGRL FT IDFLKDVMESMNKEEIEITTHFQRKRRVRDNMTKKMVTQRTIGKKKQRLNKRGYLIRAL FT TLNTMTKDAERGKLKRRAIATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAK FT LANVVRKMMTNSQDTEISFTITGDNTKWNENQNPRMFLAMITYITRNQPEWFRNILSMA FT PIMFSNKMARLGKGYMFESKRMKIRTQIPAEMLASIDLKYFNESTKKKIEKIRPLLMDG FT TASLSPGMMMGMFNMLSTVLGVSILNLGQKKYTKTTYWWDGLQSSDDFALIVNAPNHEG FT IQAGVDRFYRTCKLVGINMSKKKSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSGV FT NESADMSIGVTVIKNNMINNDLGPATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFEL FT KKLWDQTQSKVGLLVSDGGPNLYNIRNLHIPEVCLKWELMDDDYRGRLCNPLNPFVSHK FT EIDSVNNAVVMPAHGPAKSMEYDAVATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCN FT LFEKFFPSSSYRRPVGISSMVEAMVSRARIDARVDFESGRIKKEEFSEIMKICSTIEEL FT RRQK" FT gene 107..379 FT /gene="PB1-F2" FT misc_feature 107..379 FT /gene="PB1-F2" FT /note="nonfunctional PB1-F2 protein due to mutation" XX SQ Sequence 2316 BP; 833 A; 438 C; 518 G; 527 T; 0 other; caaaccattt gaatggatgt caatccgact ttacttttcc taaaaattcc agcacaaaat 60 gccataagca ccacattccc ttatactgga gatcctccat acagccatgg aacaggaaca 120 ggatacacca tggacacagt aaacagaaca caccaatact cagaaaaggg gaagtggaca 180 acaaatacag agactggtgc accccagctc aacccgattg acggaccact acccgaggat 240 aatgaaccaa gtgggtatgc acaaacagac tgtgttctag aggctatggc tttccttgaa 300 gaatcccatc caggaatatt tgagaattca tgccttgaaa caatggaagt tgttcaacaa 360 acaagggtag ataaactgac tcaaggtcgc cagacttatg attggacatt aaacagaaat 420 caaccggcag caactgcatt ggccaacacc atagaagttt tcagatcaaa tgacctaaca 480 gctaacgagt caggaaggct aatagatttc ttaaaggatg tgatggaatc aatgaacaaa 540 gaggaaatag agataacaac ccactttcaa agaaagagga gagtaagaga caacatgacc 600 aagaagatgg tcacgcaaag aacaataggg aagaaaaaac agagactgaa taagagaggc 660 tatctaataa gagcactgac attaaataca atgacaaaag atgcagagag aggcaagtta 720 aaaagaaggg ctatagcaac acctgggatg caaattagag gtttcgtata ctttgttgaa 780 actttagcta ggagcatttg cgaaaagctt gaacagtctg ggctcccagt agggggcaat 840 gaaaagaagg ccaaattggc aaatgttgtg agaaagatga tgactaattc acaagataca 900 gagatttctt tcacaatcac tggggacaac actaaatgga atgaaaatca aaatcctcga 960 atgttcctgg cgatgattac atatatcacc agaaatcaac ccgagtggtt tagaaacatc 1020 ctgagcatgg cacccataat gttctcaaat aaaatggcaa gactaggaaa agggtacatg 1080 ttcgagagta aaagaatgaa gattcgaaca caaataccag cagaaatgct agcaagcatt 1140 gatctaaagt atttcaatga atcaacaaag aagaaaattg agaagataag gcctctttta 1200 atggatggca cagcatcact gagtcctggg atgatgatgg gcatgttcaa catgctaagt 1260 acggtcttgg gagtatcgat actgaatctc ggacaaaaga aatacaccaa gacaacatac 1320 tggtgggatg ggctccaatc atccgacgat tttgctctca tagtgaatgc accaaaccat 1380 gaaggaatcc aagcaggagt ggacagattc tacaggacct gcaaattagt gggaatcaac 1440 atgagcaaaa agaagtccta tataaataag acagggacat ttgaattcac aagctttttt 1500 tatcgctatg gatttgtggc taattttagc atggagctac ccagcttcgg agtgtctgga 1560 gtaaatgaat cagctgacat gagtattgga gtaacagtga taaagaacaa catgataaac 1620 aatgaccttg gacctgcaac agctcagatg gctcttcaat tgttcatcaa agactacaga 1680 tacacatata ggtgtcatag gggagacaca caaattcaga cgagaagatc atttgagttg 1740 aagaagctat gggatcaaac ccaatcgaag gtagggctat tagtatcaga tggaggacca 1800 aacttataca acatacggaa tcttcacatt cctgaagtct gcttaaaatg ggagctaatg 1860 gatgatgatt atcgggggag actttgtaat cccctgaatc cctttgtgag tcataaggag 1920 attgattctg taaacaatgc tgtggtaatg ccagcccatg gcccagccaa aagcatggaa 1980 tatgatgccg ttgctactac acattcctgg attcccaaga ggaatcgttc tatcctcaac 2040 acaagccaaa ggggaatcct tgaggatgaa cagatgtacc agaagtgttg caatttattc 2100 gagaaatttt tccctagcag ttcatataga agaccggttg gaatttctag catggtggag 2160 gccatggtgt ctagggcccg gattgatgcc agagtcgact ttgagtctgg acggatcaag 2220 aaagaagagt tctctgagat catgaagatc tgttccacca ttgaagaact cagacggcaa 2280 aaataatgaa tttaacttgt ccttcatgaa aaaatg 2316 // ID MT167208; SV 1; linear; viral cRNA; STD; VRL; 2208 BP. XX AC MT167208; XX PR Project:PRJNA37813; XX DT 17-MAR-2020 (Rel. 144, Created) DT 17-MAR-2020 (Rel. 144, Last updated, Version 1) XX DE Influenza A virus (A/Alaska/61/2019(H1N1)) segment 3 polymerase PA (PA) and DE PA-X protein (PA-X) genes, complete cds. XX KW . XX OS Influenza A virus OC Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Insthoviricetes; OC Articulavirales; Orthomyxoviridae; Alphainfluenzavirus. XX RN [1] RP 1-2208 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT "Influenza Sequencing Activity group"; RL Unpublished. XX RN [2] RP 1-2208 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT ; RL Submitted (09-MAR-2020) to the INSDC. RL WHO Collaborating Center for Surveillance, Epidemiology and Control of RL Influenza, Influenza Division, Centers for Disease Control and Prevention, RL 1600 Clifton Road, N.E., Atlanta, GA 30333, USA XX DR MD5; 56181d9e619a6dcbe87694f0ae24cde5. XX CC ##FluData-START## CC EPI_ISOLATE_ID :: EPI_ISL_409218 CC NAME :: A/Alaska/61/2019 CC TYPE :: H1N1 CC Segment_name :: PA CC HOST_AGE :: 47 CC HOST_GENDER :: F CC PASSAGE :: C1 (2020-01-15) CC LOCATION :: United States / Alaska CC COLLECT_DATE :: 20-Dec-2019 CC Lineage :: A(H1N1)pdm09 CC RESIST_TO_OSELTAMIVIR :: Sensitive CC RESIST_TO_ZANAMVIR :: Sensitive CC SPECIMEN_ID :: 359140 ORIGINAL CC CHARACTERIZATION :: A/BRISBANE/02/2018-LIKE (H1N1)pdm09 CC SENDER_LAB :: Alaska State Virology Lab CC SEQLAB_SAMPLE_ID :: 3026054430 CC EPI_SEQUENCE_ID :: EPI1684587 CC ##FluData-END## XX FH Key Location/Qualifiers FH FT source 1..2208 FT /organism="Influenza A virus" FT /segment="3" FT /host="Homo sapiens" FT /strain="A/Alaska/61/2019" FT /serotype="H1N1" FT /mol_type="viral cRNA" FT /country="USA:Alaska" FT /collection_date="20-Dec-2019" FT /db_xref="taxon:11320" FT gene 13..2163 FT /gene="PA" FT CDS 13..2163 FT /codon_start=1 FT /gene="PA" FT /product="polymerase PA" FT /protein_id="QIJ23703.1" FT /translation="MEDFVRQCFNPMIVELAEKAMKEYGEDPKIETNKFAAICTHLEVC FT FMYSDFHFIDERGESIIVESGDPNALLKHRFEIIEGRDRIMAWTVVNSICNTTGIEKPK FT FLPDLYDYKENRFIEIGVTRREVHIYYLEKANKIKSEKTHIHIFSFTGEEMATKADYTL FT DEESRARIKTRLFTIRQEMASRSLWDSFRQSERGEETIEEKFEITGTMRKLADQSLPPN FT FSSLENFRAYVDGFEPNGCIEGKLSQMSKEVNAKIEPFLRTTPRPLRLPDGPLCHQRSK FT FLLMDALKLSIEDPSHEGEGIPLYDAIKCMKTFFGWKEPKIVKPHEKGVNPNYLMAWKQ FT VLAELQDIENEEKIPRTKNMKKTSQLKWALGENMAPEKVDFDDCKDVGDLKQYDSDEPE FT PRSLASWVQNEFNKACELTDSSWIELDEIGEDVAPIEHIASMRRNYFTAEVSHCRATEY FT IMKGVYINTALLNASCAAMDDFQLIPMISKCRTKEGRRKTNLYGFIIKGRSHLRSDTDV FT VNFVSMEFSLTDPRLEPHKWEKYCVLEIGDMLLRTAIGQVSRPMFLYVRTNGTSKIKMK FT WGMEMRRCLLQSLQQIESMIEAESSVKEKDMTKEFFENKSETWPIGESPRGVEEGSIGK FT VCRTLLAKSVFNSLYASPQLEGFSAESRKLLLIVQALRDNLEPGTFDLGGLYEAIEECL FT INDPWVLLNASWFNSFLTHALK" FT gene 13..712 FT /gene="PA-X" FT CDS join(13..582,584..712) FT /codon_start=1 FT /ribosomal_slippage FT /gene="PA-X" FT /product="PA-X protein" FT /protein_id="QIJ23704.1" FT /translation="MEDFVRQCFNPMIVELAEKAMKEYGEDPKIETNKFAAICTHLEVC FT FMYSDFHFIDERGESIIVESGDPNALLKHRFEIIEGRDRIMAWTVVNSICNTTGIEKPK FT FLPDLYDYKENRFIEIGVTRREVHIYYLEKANKIKSEKTHIHIFSFTGEEMATKADYTL FT DEESRARIKTRLFTIRQEMASRSLWDSFVSPKEAKKQLKKSLKLQELCASLPTKVSHQT FT SPALKTSEPM" XX SQ Sequence 2208 BP; 746 A; 423 C; 515 G; 524 T; 0 other; tactgatcca aaatggaaga ctttgtgcga caatgcttca atccaatgat cgtcgagctt 60 gcggaaaagg caatgaaaga atatggggaa gaccccaaaa ttgaaactaa taagtttgct 120 gcaatttgca cacatttgga agtttgtttc atgtattcgg atttccattt cattgatgaa 180 cggggtgaat caataattgt agaatctggt gacccaaatg cactattgaa gcaccgattt 240 gagataattg aaggaagaga ccgaatcatg gcctggacag tggtgaacag tatatgtaac 300 acaacaggga tagagaagcc taaatttctt cctgatttgt atgattacaa agagaaccgg 360 ttcattgaaa ttggagtaac acggagagaa gtccacatat attacctaga gaaagccaac 420 aaaataaaat ctgagaagac acacattcac atcttttcat tcactggaga agagatggcc 480 accaaagcag actacaccct tgacgaagaa agcagagcaa gaatcaaaac taggcttttc 540 actataagac aagaaatggc cagtaggagt ctatgggatt cctttcgtca gtccgaaaga 600 ggcgaagaaa caattgaaga aaagtttgaa attacaggaa ctatgcgcaa gcttgccgac 660 caaagtctcc caccaaactt ctccagcctt gaaaacttca gagcctatgt agatggattc 720 gagccgaacg gctgcattga gggcaagctt tcccaaatgt caaaagaagt gaacgccaaa 780 attgaaccat tcttgaggac gacaccacgc cccctcagat tacctgatgg acctctttgc 840 catcagcggt caaagttcct gctgatggat gctctgaaat taagcattga agacccgagt 900 cacgaggggg aaggaatacc actatatgat gcaatcaaat gcatgaagac attctttggc 960 tggaaagagc ctaaaatagt caaaccacat gagaaaggcg taaatcccaa ttacctcatg 1020 gcttggaagc aggtgctagc agagctacag gacattgaaa atgaagagaa aatcccaagg 1080 acaaagaaca tgaagaaaac aagccaattg aagtgggcac tcggtgaaaa tatggcgcct 1140 gaaaaagtgg actttgatga ctgtaaagat gttggagacc ttaaacagta tgacagtgat 1200 gagccagagc ccagatctct agcaagctgg gtccaaaacg aattcaataa ggcatgtgaa 1260 ttgactgatt caagctggat agaacttgat gaaataggag aagatgttgc cccgattgaa 1320 catatagcaa gcatgaggag gaactatttt acagcagaag tgtcccactg cagggctact 1380 gaatacataa tgaagggagt gtacataaat acggcattgc ttaatgcatc ctgtgcagcc 1440 atggatgact ttcagctgat tccaatgata agcaaatgta ggaccaaaga aggaagacgg 1500 aaaacaaacc tgtatgggtt cattataaaa ggaaggtctc atttgagaag tgatactgat 1560 gtagtgaact ttgtaagtat ggagttctca ctcactgatc caagactgga accacacaaa 1620 tgggaaaaat actgtgttct tgaaatagga gacatgctat tgagaactgc gataggtcaa 1680 gtgtcgaggc ccatgttcct atatgtgaga accaatggaa cctccaagat caagatgaaa 1740 tggggcatgg aaatgaggcg ctgccttctt caatctcttc aacagattga gagcatgatt 1800 gaagccgagt cttctgtcaa agagaaagac atgaccaagg aattctttga aaacaaatcg 1860 gaaacatggc caatcggaga gtcacccagg ggagtggagg aaggctctat tggaaaagtg 1920 tgcagaacct tactggcaaa atctgtgttc aacagtctat atgcttctcc acaacttgag 1980 gggttttcgg ctgaatcaag aaaattgctt ctcattgttc aggcacttag ggacaacctg 2040 gaacctggaa cctttgatct tggggggcta tatgaagcaa tcgaggagtg cttgattaat 2100 gatccctggg ttttgcttaa tgcatcttgg ttcaactcct tcctcacaca tgcactgaaa 2160 tagttgtggc aatgctacta tttgctatcc atattgtcca aaaaagta 2208 // ID MT167209; SV 1; linear; viral cRNA; STD; VRL; 1752 BP. XX AC MT167209; XX PR Project:PRJNA37813; XX DT 17-MAR-2020 (Rel. 144, Created) DT 17-MAR-2020 (Rel. 144, Last updated, Version 1) XX DE Influenza A virus (A/Alaska/61/2019(H1N1)) segment 4 hemagglutinin (HA) DE gene, complete cds. XX KW . XX OS Influenza A virus OC Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Insthoviricetes; OC Articulavirales; Orthomyxoviridae; Alphainfluenzavirus. XX RN [1] RP 1-1752 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT "Influenza Sequencing Activity group"; RL Unpublished. XX RN [2] RP 1-1752 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT ; RL Submitted (09-MAR-2020) to the INSDC. RL WHO Collaborating Center for Surveillance, Epidemiology and Control of RL Influenza, Influenza Division, Centers for Disease Control and Prevention, RL 1600 Clifton Road, N.E., Atlanta, GA 30333, USA XX DR MD5; 8db0805d45e3661a343703aededb957a. XX CC ##FluData-START## CC EPI_ISOLATE_ID :: EPI_ISL_409218 CC NAME :: A/Alaska/61/2019 CC TYPE :: H1N1 CC Segment_name :: HA CC HOST_AGE :: 47 CC HOST_GENDER :: F CC PASSAGE :: C1 (2020-01-15) CC LOCATION :: United States / Alaska CC COLLECT_DATE :: 20-Dec-2019 CC Lineage :: A(H1N1)pdm09 CC RESIST_TO_OSELTAMIVIR :: Sensitive CC RESIST_TO_ZANAMVIR :: Sensitive CC SPECIMEN_ID :: 359140 ORIGINAL CC CHARACTERIZATION :: A/BRISBANE/02/2018-LIKE (H1N1)pdm09 CC SENDER_LAB :: Alaska State Virology Lab CC SEQLAB_SAMPLE_ID :: 3026054430 CC EPI_SEQUENCE_ID :: EPI1684591 CC ##FluData-END## XX FH Key Location/Qualifiers FH FT source 1..1752 FT /organism="Influenza A virus" FT /segment="4" FT /host="Homo sapiens" FT /strain="A/Alaska/61/2019" FT /serotype="H1N1" FT /mol_type="viral cRNA" FT /country="USA:Alaska" FT /collection_date="20-Dec-2019" FT /db_xref="taxon:11320" FT gene 21..1721 FT /gene="HA" FT CDS 21..1721 FT /codon_start=1 FT /gene="HA" FT /product="hemagglutinin" FT /function="receptor binding and fusion protein" FT /protein_id="QIJ23705.1" FT /translation="MKAILVVLLYTFTTANADTLCIGYHANNSTDTVDTVLEKNVTVTH FT SVNLLEDKHNGKLCKLRGVAPLHLGKCNIAGWILGNPECESLSTARSWSYIVETSNSDN FT GTCYPGDFINYEELREQLSSVSSFERFEIFPKTSSWPNHDSNNGVTAACPQAGAKSFYK FT NLIWLVKKGNSYPMLNQTYINDKGKEVLVLWGIHHPPTTADQQSLYQNADAYVFVGTSR FT YSKKFKPEIAKRPKVRDQEGRMNYYWTLVDPGDKITFEATGNLVVPRYAFTMERDAGSG FT IIISDTPVHDCNTTCQTPEGAINTSLPFHNVNPITIGKCPKYVKSTKLRLATGLRNVPS FT IQSRGLFGAIAGFIEGGWTGMVDGWYGYHHQNEQGSGYAADLKSTQNAIDKITNKVNSV FT IEKMNTQFTAVGKEFNHLEKRIENLNKKVDDGFLDVWTYNAELLVLLENERTLDYHDSN FT VKNLYEKVRNQLKNNAKEIGNGCFEFYHKCDNTCMESVKNGTYDYPKYSEEAKLNREKI FT DGVKLESTRIYQILAIYSTAASSLVLVVSLGAISFWMCSNGSLQCRICI" FT sig_peptide 21..71 FT /gene="HA" FT mat_peptide 72..1052 FT /gene="HA" FT /product="HA1" FT mat_peptide 1053..1718 FT /gene="HA" FT /product="HA2" XX SQ Sequence 1752 BP; 633 A; 331 C; 380 G; 408 T; 0 other; ggaaaacaaa agcaacaaaa atgaaggcaa tactagtagt tctgctgtat acattcacaa 60 ccgcaaatgc agacacatta tgtataggtt atcatgcgaa caattcaaca gacactgtag 120 acacagtact agaaaagaat gtaacagtaa cacactctgt taatcttctg gaagacaagc 180 ataacggaaa actatgcaaa ctaagagggg tagccccatt gcacttgggt aaatgtaaca 240 ttgctggctg gatcctggga aatccagaat gtgaatcact ctccacagca agatcatggt 300 cctacattgt ggaaacatct aattcagaca atggaacgtg ttacccagga gatttcatca 360 attatgagga gctaagagag cagttgagct cagtgtcatc atttgaaagg tttgaaatat 420 tccccaagac aagttcatgg cctaatcatg actcgaacaa tggtgtaacg gcagcatgtc 480 ctcaagctgg agcaaaaagc ttctacaaaa acttgatatg gctggttaaa aaaggaaatt 540 catacccaat gctcaaccaa acctacatta atgataaagg gaaagaagtc ctcgtgctgt 600 ggggcattca ccatccacct actactgctg accaacaaag cctctatcag aatgcagatg 660 catatgtttt tgtggggaca tcaagataca gcaagaagtt caagccggaa atagcaaaaa 720 gacccaaagt gagggatcaa gaagggagaa tgaactatta ctggacacta gtagacccgg 780 gagacaaaat aacattcgaa gcaactggaa atctagtggt accgagatat gcattcacaa 840 tggaaagaga tgctggatct ggtattatca tttcagatac accagtccac gattgcaata 900 caacttgtca gacacctgag ggtgctataa acaccagcct cccatttcat aatgtaaatc 960 cgatcacaat tgggaaatgt ccaaagtatg taaaaagcac aaaattgaga ctggccacag 1020 gattgaggaa tgtcccgtct attcaatcta gaggcctatt cggggccatt gccggcttca 1080 ttgaaggggg atggacagga atggtagatg gatggtacgg ttatcaccat caaaatgagc 1140 aggggtcagg atatgcagcc gatctgaaga gcacacaaaa tgccattgat aagattacta 1200 acaaagtaaa ttctgttatt gaaaagatga atacacagtt cacagcagtg ggtaaagagt 1260 tcaaccacct tgaaaaaaga atagagaatc taaataaaaa agttgatgat ggtttcctgg 1320 acgtttggac ttacaatgcc gaactgttgg ttctactgga aaacgaaaga actttggact 1380 atcacgattc aaatgtgaag aacttgtatg aaaaagtaag aaaccaatta aaaaacaatg 1440 ccaaggaaat tggaaacggc tgctttgaat tttaccacaa atgcgacaac acatgcatgg 1500 aaagtgtcaa gaatgggact tatgactacc caaaatactc agaggaagca aaattaaaca 1560 gagaaaaaat agatggagta aagctggaat caacaaggat ctaccagatt ttggcgatct 1620 attcaactgc cgccagttca ttggtactgg tagtctccct gggggcaatc agcttctgga 1680 tgtgctctaa tgggtctcta cagtgtagaa tatgtattta acattaggat ttcagaatca 1740 tgagaaaaac ac 1752 // ID MT167210; SV 1; linear; viral cRNA; STD; VRL; 1540 BP. XX AC MT167210; XX PR Project:PRJNA37813; XX DT 17-MAR-2020 (Rel. 144, Created) DT 17-MAR-2020 (Rel. 144, Last updated, Version 1) XX DE Influenza A virus (A/Alaska/61/2019(H1N1)) segment 5 nucleocapsid protein DE (NP) gene, complete cds. XX KW . XX OS Influenza A virus OC Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Insthoviricetes; OC Articulavirales; Orthomyxoviridae; Alphainfluenzavirus. XX RN [1] RP 1-1540 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT "Influenza Sequencing Activity group"; RL Unpublished. XX RN [2] RP 1-1540 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT ; RL Submitted (09-MAR-2020) to the INSDC. RL WHO Collaborating Center for Surveillance, Epidemiology and Control of RL Influenza, Influenza Division, Centers for Disease Control and Prevention, RL 1600 Clifton Road, N.E., Atlanta, GA 30333, USA XX DR MD5; 916d64ef8749b26862421d7e4164ccef. XX CC ##FluData-START## CC EPI_ISOLATE_ID :: EPI_ISL_409218 CC NAME :: A/Alaska/61/2019 CC TYPE :: H1N1 CC Segment_name :: NP CC HOST_AGE :: 47 CC HOST_GENDER :: F CC PASSAGE :: C1 (2020-01-15) CC LOCATION :: United States / Alaska CC COLLECT_DATE :: 20-Dec-2019 CC Lineage :: A(H1N1)pdm09 CC RESIST_TO_OSELTAMIVIR :: Sensitive CC RESIST_TO_ZANAMVIR :: Sensitive CC SPECIMEN_ID :: 359140 ORIGINAL CC CHARACTERIZATION :: A/BRISBANE/02/2018-LIKE (H1N1)pdm09 CC SENDER_LAB :: Alaska State Virology Lab CC SEQLAB_SAMPLE_ID :: 3026054430 CC EPI_SEQUENCE_ID :: EPI1684584 CC ##FluData-END## XX FH Key Location/Qualifiers FH FT source 1..1540 FT /organism="Influenza A virus" FT /segment="5" FT /host="Homo sapiens" FT /strain="A/Alaska/61/2019" FT /serotype="H1N1" FT /mol_type="viral cRNA" FT /country="USA:Alaska" FT /collection_date="20-Dec-2019" FT /db_xref="taxon:11320" FT gene 34..1530 FT /gene="NP" FT CDS 34..1530 FT /codon_start=1 FT /gene="NP" FT /product="nucleocapsid protein" FT /protein_id="QIJ23706.1" FT /translation="MASQGTKRSYEQMETGGERQDTTEIRASVGRMIGGIGRFYIQMCT FT ELKLSDYDGRLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRIDGKW FT TRELILYDKEEIRRVWRQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRM FT CSLMQGSTLPRRSGAAGAAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTRVAYERM FT CNILKGKFQTAAQRAMMDQVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVY FT GLAVASGHDFEREGYSLVGIDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFED FT LRVSSFIRGKKVIPRGKLSTRGVQIASNENVETMDSNTLELRSRYWAIRTRSGGNTNQQ FT KASAGQISVQPTFSVQRNLPFERATIMAAFSGNNEGRTSDMRTEVIRMMESAKPEDLSF FT QGRGVFELSDEKATNPIVPSFDMSNEGSYFFGDNAEEYDN" XX SQ Sequence 1540 BP; 525 A; 299 C; 392 G; 324 T; 0 other; gtagataatc actcaatgag tgacatcgaa gccatggcgt ctcaaggcac caaacgatca 60 tatgaacaaa tggagactgg tggggagcgc caggatacca cagaaatcag agcatctgtt 120 ggaagaatga ttggtggaat cgggagattc tacatccaaa tgtgcactga actaaaactc 180 agtgattatg atggacgact aatccagaac agcataacaa tagagaggat ggtgctttct 240 gcttttgatg agagaagaaa taaataccta gaagagcatc caagtgctgg gaaggaccct 300 aagaaaacag gaggacccat ctatagaaga atagacggaa aatggacaag agaactcatc 360 ctttatgaca aagaagaaat aaggagagtt tggcgccaag caaacaatgg cgaagatgca 420 acagcaggtc ttactcatat catgatttgg cattccaatc tgaatgatgc cacatatcag 480 aggacaagag cacttgttcg cactggaatg gatcccagaa tgtgctccct aatgcaaggt 540 tcaacacttc ccaggaggtc tggtgccgca ggtgctgcag taaaaggagt tggaacaata 600 gctatggagt taatcagaat gataaaacgt ggaatcaatg accgaaattt ctggaggggt 660 gaaaatggac gaaggacaag agttgcttat gaaagaatgt gcaatatcct caaaggaaaa 720 tttcaaacag ctgcccagag ggcaatgatg gatcaagtaa gagaaagtcg aaacccagga 780 aacgctgaga ttgaagacct cattttcctg gcacgctcag cactcattct gagaggatca 840 gttgcacata aatcctgcct gcctgcttgt gtgtatgggc ttgcagtagc aagtggccat 900 gactttgaaa gggaaggata ctcactggtc gggatagacc cattcaaatt actccaaaac 960 agtcaagtgg tcagcctgat gagaccaaat gaaaatccag ctcacaagag tcaattggta 1020 tggatggcat gccactctgc tgcatttgaa gatttaagag tatcaagttt cataagagga 1080 aagaaagtga tcccaagagg aaagctttcc acaagagggg ttcagattgc ttcaaatgag 1140 aatgtggaaa ccatggactc caataccctg gaactaagaa gcagatactg ggccataaga 1200 accaggagtg gaggaaatac caatcaacag aaggcatctg caggccagat cagtgtgcag 1260 cctacattct cagtgcagcg aaatctccct tttgaaagag caaccattat ggcagcattc 1320 agcgggaaca atgaaggacg gacatccgac atgcgaacag aagttataag aatgatggaa 1380 agtgcaaagc cagaggattt gtccttccag gggcggggag tcttcgagct ctcggacgaa 1440 aaggcaacga acccgatcgt gccttccttt gacatgagta atgaagggtc ttatttcttc 1500 ggagacaatg cagaggagta tgacaattga agaaaaatac 1540 // ID MT167211; SV 1; linear; viral cRNA; STD; VRL; 1433 BP. XX AC MT167211; XX PR Project:PRJNA37813; XX DT 17-MAR-2020 (Rel. 144, Created) DT 17-MAR-2020 (Rel. 144, Last updated, Version 1) XX DE Influenza A virus (A/Alaska/61/2019(H1N1)) segment 6 neuraminidase (NA) DE gene, complete cds. XX KW . XX OS Influenza A virus OC Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Insthoviricetes; OC Articulavirales; Orthomyxoviridae; Alphainfluenzavirus. XX RN [1] RP 1-1433 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT "Influenza Sequencing Activity group"; RL Unpublished. XX RN [2] RP 1-1433 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT ; RL Submitted (09-MAR-2020) to the INSDC. RL WHO Collaborating Center for Surveillance, Epidemiology and Control of RL Influenza, Influenza Division, Centers for Disease Control and Prevention, RL 1600 Clifton Road, N.E., Atlanta, GA 30333, USA XX DR MD5; 696d1f268554b42dfdb5d873a0e13216. XX CC ##FluData-START## CC EPI_ISOLATE_ID :: EPI_ISL_409218 CC NAME :: A/Alaska/61/2019 CC TYPE :: H1N1 CC Segment_name :: NA CC HOST_AGE :: 47 CC HOST_GENDER :: F CC PASSAGE :: C1 (2020-01-15) CC LOCATION :: United States / Alaska CC COLLECT_DATE :: 20-Dec-2019 CC Lineage :: A(H1N1)pdm09 CC RESIST_TO_OSELTAMIVIR :: Sensitive CC RESIST_TO_ZANAMVIR :: Sensitive CC SPECIMEN_ID :: 359140 ORIGINAL CC CHARACTERIZATION :: A/BRISBANE/02/2018-LIKE (H1N1)pdm09 CC SENDER_LAB :: Alaska State Virology Lab CC SEQLAB_SAMPLE_ID :: 3026054430 CC EPI_SEQUENCE_ID :: EPI1684590 CC ##FluData-END## XX FH Key Location/Qualifiers FH FT source 1..1433 FT /organism="Influenza A virus" FT /segment="6" FT /host="Homo sapiens" FT /strain="A/Alaska/61/2019" FT /serotype="H1N1" FT /mol_type="viral cRNA" FT /country="USA:Alaska" FT /collection_date="20-Dec-2019" FT /db_xref="taxon:11320" FT gene 9..1418 FT /gene="NA" FT CDS 9..1418 FT /codon_start=1 FT /gene="NA" FT /product="neuraminidase" FT /protein_id="QIJ23707.1" FT /translation="MNPNQKIITIGSICMTIGMANLILQIGNIISIWVSHSIQIGNQSQ FT IETCNKSVITYENNTWVNQTYVNISNTNSAARQSVAPVKLAGNSSLCPVSGWAIYSKDN FT SVRIGSKGDVFVIREPFISCSPLECRTFFLTQGALLNDKHSNGTIKDRSPYRTLMSCPI FT GEVPSPYNSRFESVAWSASACHDGTNWLTIGISGPDSGAVAVLKYNGIITDTIKSWRNN FT ILRTQESECACVNGSCFTIMTDGPSDGQASYKIFRIEKGKIIKSVEMKAPNYHYEECSC FT YPDSSEITCVCRDNWHGSNRPWVSFNQNLEYQMGYICSGVFGDNPRPNDKTGSCGPVSS FT NGANGVKGFSFKYGNGVWIGRTKSISSRKGFEMIWDPNGWTGTDNKFSKKQDIVGINEW FT SGYSGSFVQHPELTGLNCIRPCFWVELIRGRPEENTIWTSGSSISFCGVDSDIVGWSWP FT DGAELPFTVDK" XX SQ Sequence 1433 BP; 462 A; 261 C; 334 G; 376 T; 0 other; agtttaaaat gaatccaaac caaaagataa taaccattgg ttctatctgt atgacaattg 60 gaatggctaa cttaatatta caaattggaa atataatctc aatatgggtt agccactcaa 120 ttcaaattgg aaatcaaagc cagattgaaa catgcaataa aagcgtcatt acttatgaaa 180 acaacacttg ggtaaatcag acatatgtta acatcagcaa caccaactct gctgctagac 240 agtcagtggc tcccgtgaaa ttagcgggca attcctctct ctgccctgtt agtggatggg 300 ctatatacag taaagacaac agtgtaagaa tcggttccaa gggggatgtg tttgtcataa 360 gggaaccatt catatcatgc tctcccttgg aatgcagaac cttcttcttg actcaagggg 420 ctttgctaaa tgacaaacat tccaatggaa ccattaaaga cagaagccca tatcgaaccc 480 taatgagctg tcctattggt gaagttccct ctccatacaa ctcaagattt gagtcagtcg 540 cttggtcagc aagtgcttgt catgatggca ccaattggct aacaattgga atttctggcc 600 cagacagtgg ggcagtggct gtgttaaaat acaatggcat aataacagac actatcaaga 660 gttggaggaa caatatattg agaacacaag agtctgaatg tgcatgtgta aatggttctt 720 gctttaccat aatgaccgat ggaccaagtg atggacaggc ctcatacaaa atcttcagaa 780 tagaaaaggg aaagataatc aaatcagtcg aaatgaaagc ccctaattat cactatgagg 840 aatgctcctg ttaccctgat tctagtgaaa tcacctgtgt gtgcagggat aactggcatg 900 gctcgaatcg accgtgggtg tctttcaacc agaatctgga atatcagatg ggatacatat 960 gcagtggggt tttcggagac aatccacgcc ctaatgataa gacaggcagt tgtggtccag 1020 tatcgtctaa tggagcaaat ggggtaaaag gattttcatt caaatacggc aatggtgttt 1080 ggatagggag aactaagagc attagttcaa gaaaaggttt tgagatgatt tgggatccga 1140 atggatggac tgggactgac aataaattct caaaaaagca agatatcgta ggaataaatg 1200 agtggtcagg gtatagcggg agttttgttc agcatccaga actaacaggg ctgaattgta 1260 taagaccttg cttctgggtt gaactaataa gaggacgacc cgaagagaac acaatctgga 1320 ctagcgggag cagcatatcc ttttgtggtg tagacagtga cattgtgggt tggtcttggc 1380 cagacggtgc tgagttgcca tttactgttg acaagtaatt tgttcaaaaa act 1433 // ID MT167212; SV 1; linear; viral cRNA; STD; VRL; 1002 BP. XX AC MT167212; XX PR Project:PRJNA37813; XX DT 17-MAR-2020 (Rel. 144, Created) DT 17-MAR-2020 (Rel. 144, Last updated, Version 1) XX DE Influenza A virus (A/Alaska/61/2019(H1N1)) segment 7 matrix protein 2 (M2) DE and matrix protein 1 (M1) genes, complete cds. XX KW . XX OS Influenza A virus OC Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Insthoviricetes; OC Articulavirales; Orthomyxoviridae; Alphainfluenzavirus. XX RN [1] RP 1-1002 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT "Influenza Sequencing Activity group"; RL Unpublished. XX RN [2] RP 1-1002 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT ; RL Submitted (09-MAR-2020) to the INSDC. RL WHO Collaborating Center for Surveillance, Epidemiology and Control of RL Influenza, Influenza Division, Centers for Disease Control and Prevention, RL 1600 Clifton Road, N.E., Atlanta, GA 30333, USA XX DR MD5; f0ef1f0d8a556927b464988efdf789f4. XX CC ##FluData-START## CC EPI_ISOLATE_ID :: EPI_ISL_409218 CC NAME :: A/Alaska/61/2019 CC TYPE :: H1N1 CC Segment_name :: M CC HOST_AGE :: 47 CC HOST_GENDER :: F CC PASSAGE :: C1 (2020-01-15) CC LOCATION :: United States / Alaska CC COLLECT_DATE :: 20-Dec-2019 CC Lineage :: A(H1N1)pdm09 CC RESIST_TO_OSELTAMIVIR :: Sensitive CC RESIST_TO_ZANAMVIR :: Sensitive CC SPECIMEN_ID :: 359140 ORIGINAL CC CHARACTERIZATION :: A/BRISBANE/02/2018-LIKE (H1N1)pdm09 CC SENDER_LAB :: Alaska State Virology Lab CC SEQLAB_SAMPLE_ID :: 3026054430 CC EPI_SEQUENCE_ID :: EPI1684586 CC ##FluData-END## XX FH Key Location/Qualifiers FH FT source 1..1002 FT /organism="Influenza A virus" FT /segment="7" FT /host="Homo sapiens" FT /strain="A/Alaska/61/2019" FT /serotype="H1N1" FT /mol_type="viral cRNA" FT /country="USA:Alaska" FT /collection_date="20-Dec-2019" FT /db_xref="taxon:11320" FT gene 14..995 FT /gene="M2" FT CDS join(14..39,728..995) FT /codon_start=1 FT /gene="M2" FT /product="matrix protein 2" FT /protein_id="QIJ23709.1" FT /translation="MSLLTEVETPTRSEWECRCSGSNDPLVIAANIIGILHLILWITDR FT LFFKCIYRRFKYGLKRGPSTEGVPESMREEYQQEQQSAVDVDDGHFVNIELE" FT gene 14..772 FT /gene="M1" FT CDS 14..772 FT /codon_start=1 FT /gene="M1" FT /product="matrix protein 1" FT /protein_id="QIJ23708.1" FT /translation="MSLLTEVETYVLSIIPSGPLKAEIAQRLESVFAGKNTDLEALMEW FT LKTRPILSPLTKGILGFVFTLTVPSERGLQRRRFIQNALNGNGDPNNMDRAVKLYKKLK FT REITFHGAKEVSLSYSTGALASCMGLIYNRMGTVTTEAAFGLVCATCEQIADSQHRSHR FT QMATTTNPLIRHENRMVLASTTAKAMEQVAGSSEQAAEAMEVANKTRQMVHAMRTIGTH FT PSSSAGLRDDLLENLQAYQKRMGVQMQRFK" XX SQ Sequence 1002 BP; 300 A; 208 C; 254 G; 240 T; 0 other; tagatgttta aagatgagtc ttctaaccga ggtcgaaacg tacgttcttt ctatcatccc 60 gtcaggcccc ctcaaagccg agatcgcaca gagactggaa agtgtctttg caggaaagaa 120 cacagatctt gaggctctca tggaatggct aaagacaaga ccaatcttgt cacctctgac 180 taagggaatt ttagggtttg tgttcacgct caccgtgccc agtgagcgag gactgcagcg 240 taggcgcttt atccaaaatg ccctaaatgg aaatggggac ccaaacaaca tggatagagc 300 agttaaacta tacaagaaac tcaaaagaga aataacgttc catggggcca aggaggtgtc 360 actaagctat tcaactggtg cacttgcaag ttgcatgggc ctcatataca acaggatggg 420 aacagtgacc acagaagctg ctttcggtct agtttgtgcc acttgtgaac agattgctga 480 ttcacagcat cggtctcaca gacaaatggc tactaccaca aatccactaa tcaggcatga 540 aaacagaatg gtgttggcta gcactacggc aaaggctatg gaacaggtgg ctggatcgag 600 tgaacaggca gcggaggcca tggaggttgc taataagact aggcagatgg tacatgcaat 660 gagaactatt ggaactcatc ctagctccag tgctggtcta agagatgacc ttcttgaaaa 720 tttgcaggcc taccagaagc gaatgggagt gcagatgcag cggttcaaat gatcctctcg 780 tcattgcagc aaacatcatt gggatcttgc acctgatatt gtggattact gatcgtcttt 840 ttttcaaatg catttatcgt cgctttaaat acggtttgaa aagagggcct tctacggaag 900 gagtgcctga gtccatgagg gaagaatatc aacaggagca gcagagtgct gtggatgttg 960 acgatggtca ttttgtcaac atagagctag agtaaaaaac ta 1002 // ID MT167213; SV 1; linear; viral cRNA; STD; VRL; 865 BP. XX AC MT167213; XX PR Project:PRJNA37813; XX DT 17-MAR-2020 (Rel. 144, Created) DT 17-MAR-2020 (Rel. 144, Last updated, Version 1) XX DE Influenza A virus (A/Alaska/61/2019(H1N1)) segment 8 nuclear export protein DE (NEP) and nonstructural protein 1 (NS1) genes, complete cds. XX KW . XX OS Influenza A virus OC Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Insthoviricetes; OC Articulavirales; Orthomyxoviridae; Alphainfluenzavirus. XX RN [1] RP 1-865 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT "Influenza Sequencing Activity group"; RL Unpublished. XX RN [2] RP 1-865 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT ; RL Submitted (09-MAR-2020) to the INSDC. RL WHO Collaborating Center for Surveillance, Epidemiology and Control of RL Influenza, Influenza Division, Centers for Disease Control and Prevention, RL 1600 Clifton Road, N.E., Atlanta, GA 30333, USA XX DR MD5; c70211b6367e74a4d90530b4e1f06389. XX CC ##FluData-START## CC EPI_ISOLATE_ID :: EPI_ISL_409218 CC NAME :: A/Alaska/61/2019 CC TYPE :: H1N1 CC Segment_name :: NS CC HOST_AGE :: 47 CC HOST_GENDER :: F CC PASSAGE :: C1 (2020-01-15) CC LOCATION :: United States / Alaska CC COLLECT_DATE :: 20-Dec-2019 CC Lineage :: A(H1N1)pdm09 CC RESIST_TO_OSELTAMIVIR :: Sensitive CC RESIST_TO_ZANAMVIR :: Sensitive CC SPECIMEN_ID :: 359140 ORIGINAL CC CHARACTERIZATION :: A/BRISBANE/02/2018-LIKE (H1N1)pdm09 CC SENDER_LAB :: Alaska State Virology Lab CC SEQLAB_SAMPLE_ID :: 3026054430 CC EPI_SEQUENCE_ID :: EPI1684585 CC ##FluData-END## XX FH Key Location/Qualifiers FH FT source 1..865 FT /organism="Influenza A virus" FT /segment="8" FT /host="Homo sapiens" FT /strain="A/Alaska/61/2019" FT /serotype="H1N1" FT /mol_type="viral cRNA" FT /country="USA:Alaska" FT /collection_date="20-Dec-2019" FT /db_xref="taxon:11320" FT gene 15..852 FT /gene="NEP" FT /gene_synonym="NS2" FT CDS join(15..44,517..852) FT /codon_start=1 FT /gene="NEP" FT /gene_synonym="NS2" FT /product="nuclear export protein" FT /note="nonstructural protein 2" FT /protein_id="QIJ23711.1" FT /translation="MESNTMSSFQDILMRMSKMQLGSSSEDLSGMVTRFESLKIYRDSL FT GEAVMRMGDLHYLQSRNEKWREQLGQKFEEIRWLIEEIRHRLKETENSFEQITFMQALQ FT LLLEVEQEIRAFSFQLI" FT gene 15..674 FT /gene="NS1" FT CDS 15..674 FT /codon_start=1 FT /gene="NS1" FT /product="nonstructural protein 1" FT /protein_id="QIJ23710.1" FT /translation="MESNTMSSFQVDCFLWHIRKRFADNGLGDAPFLDRLRRDQKSLKG FT RGNTIGLDIKTATLVGKQIVEWILKEESSETLRMAIASVPTSRYISDMTLEEMSRDWFM FT LMPRQKIIGPLCVRLDQAVMDKNIVLEANFSVIFNRLETLILLRAFTEEGTIVGEISPL FT PSLPGHTYEDVKNAVGVLIGGLEWNGNTVRVSENIQRFAWRSCDENGRPSLPPEQK" XX SQ Sequence 865 BP; 283 A; 161 C; 204 G; 217 T; 0 other; gtgacaaaaa cataatggaa tccaacacca tgtcaagctt tcaggtagac tgttttcttt 60 ggcatattcg caagcgattt gcagataatg gattgggtga tgccccattc cttgatcggc 120 tacgccgaga tcaaaagtcc ttaaaaggaa gaggcaacac cattggcctc gacatcaaaa 180 cagccactct tgttgggaaa caaattgtgg aatggatttt gaaagaggaa tccagcgaga 240 cacttagaat ggcaattgca tctgtaccta cttcgcgtta catttctgac atgaccctcg 300 aggaaatgtc acgagactgg ttcatgctta tgcctaggca aaagataata ggccctcttt 360 gcgtgcgatt ggaccaggcg gtcatggata agaacatagt actggaagca aacttcagtg 420 taatcttcaa ccgattagag accttgatac tactaagggc tttcactgag gagggaacaa 480 tagttggaga aatttcacca ttaccttctc ttccaggaca tacttatgag gatgtcaaaa 540 atgcagttgg ggtcctcatc ggaggacttg agtggaatgg taacacggtt cgagtctctg 600 aaaatataca gagattcgct tggagaagct gtgatgagaa tgggagacct tcactacctc 660 cagagcagaa atgagaagtg gcgggaacaa ttgggacaga aatttgagga aataagatgg 720 ttaattgaag aaatacgaca cagattgaaa gagacagaga atagttttga acaaataaca 780 tttatgcaag ccttacaact actgcttgaa gtagagcaag agataagagc tttctcgttt 840 cagcttattt aatgataaaa aacac 865 // ID MT167214; SV 1; linear; viral cRNA; STD; VRL; 2316 BP. XX AC MT167214; XX PR Project:PRJNA37813; XX DT 17-MAR-2020 (Rel. 144, Created) DT 17-MAR-2020 (Rel. 144, Last updated, Version 1) XX DE Influenza A virus (A/Arizona/02/2020(H1N1)) segment 1 polymerase PB2 (PB2) DE gene, complete cds. XX KW . XX OS Influenza A virus OC Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Insthoviricetes; OC Articulavirales; Orthomyxoviridae; Alphainfluenzavirus. XX RN [1] RP 1-2316 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT "Influenza Sequencing Activity group"; RL Unpublished. XX RN [2] RP 1-2316 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT ; RL Submitted (09-MAR-2020) to the INSDC. RL WHO Collaborating Center for Surveillance, Epidemiology and Control of RL Influenza, Influenza Division, Centers for Disease Control and Prevention, RL 1600 Clifton Road, N.E., Atlanta, GA 30333, USA XX DR MD5; bd4338b9c6910084c6284a43ce67226a. XX CC ##FluData-START## CC EPI_ISOLATE_ID :: EPI_ISL_409755 CC NAME :: A/Arizona/02/2020 CC TYPE :: H1N1 CC Segment_name :: PB2 CC HOST_AGE :: 58 CC HOST_GENDER :: F CC PASSAGE :: Original CC LOCATION :: United States / Arizona CC COLLECT_DATE :: 09-Jan-2020 CC Lineage :: A(H1N1)pdm09 CC RESIST_TO_OSELTAMIVIR :: Sensitive CC RESIST_TO_ZANAMVIR :: Sensitive CC SPECIMEN_ID :: AZ00094188 ORIGINAL CC SENDER_LAB :: Arizona Departmentment of Health Services CC SEQLAB_SAMPLE_ID :: 3026054669 CC EPI_SEQUENCE_ID :: EPI1688836 CC ##FluData-END## XX FH Key Location/Qualifiers FH FT source 1..2316 FT /organism="Influenza A virus" FT /segment="1" FT /host="Homo sapiens" FT /strain="A/Arizona/02/2020" FT /serotype="H1N1" FT /mol_type="viral cRNA" FT /country="USA:Arizona" FT /collection_date="09-Jan-2020" FT /db_xref="taxon:11320" FT gene 16..2295 FT /gene="PB2" FT CDS 16..2295 FT /codon_start=1 FT /gene="PB2" FT /product="polymerase PB2" FT /protein_id="QIJ23712.1" FT /translation="MERIKELRDLMSQSRTREILTKTTVDHMAIIKKYTSGRQEKNPAL FT RMKWMMAMKYPITADKRIMDIIPERNEQGQTLWSKINDAGSDRVMVSPLAVTWWNRNGP FT TTSTVHYPKVYKTYFEKVERLKHGTFGPVHFRNQVKIRRRVDTNPGHADLSAKEAQDVI FT MEVVFPNEVGARILTSESQLAITKEKKEELQNCKIAPLMVAYMLERELVRKTRFLPVAG FT GTSSVYIEVLHLTQGTCWEQMYTPGGEVRNDDVDQSLIIAARNIVRRAAVSADPLASLL FT EMCHSTQIGGVKMVDILKQNPTEEQAVDICKAAIGLRISSSFSFGGFTFKRTSGSSVKK FT EEEMLTGNLQTLKLRVHEGYEEFTMVGRRATAILRKATRRLIQLIVSGRDEQSIAEAII FT VAMVFSQEDCMIKAVRGDLNFVNRANQRLNPMHQLLRHFQKDAKVLFQNWGIETIDNVM FT GMIGILPDMTPSTEMSLRGIRVSKMGVDEYSSTERVVVSIDRFLRVRDQRGNVLLSPEE FT VSETQGTEKLTITYSSSMMWEINGPESVLVNTYQWIIRNWEIVKIQWSQDPTMLYNKME FT FEPFQSLVPKATRSRYSGFVRTLFQQMRDVLGTFDTVQIIKLLPFAAAPPEQSRMQFSS FT LTVNVRGSGLRILVRGNSPVFNYNKATKRLTILGKDAGALTEDPDEGTSGVESAVLRGF FT LILGKEDKRYGPALSINELSNLAKGEKANVLIGQGDIVLVMKRKRDSSILTDSQTATKR FT IRMAIN" XX SQ Sequence 2316 BP; 792 A; 435 C; 585 G; 504 T; 0 other; tcaaatatat tcaatatgga gagaataaaa gagctgagag atctaatgtc gcagtcccgc 60 actcgcgaga tactcactaa gaccactgtg gaccatatgg ccatcatcaa aaagtacaca 120 tcgggaaggc aagagaagaa ccccgcgctc agaatgaagt ggatgatggc aatgaaatac 180 ccaattacgg cagacaagag aataatggac ataatcccag agaggaatga acaaggacaa 240 accctctgga gcaaaataaa cgatgctgga tcagaccgag tgatggtatc acctctggca 300 gtaacatggt ggaataggaa tggtccaaca acaagtacag ttcattaccc taaggtatat 360 aaaacttatt tcgaaaaggt cgaaaggttg aaacatggta ccttcggccc tgtccacttc 420 agaaatcaag ttaaaataag gaggagagtt gatacaaacc ctggccatgc agatctcagt 480 gccaaggagg cacaggatgt gattatggaa gttgttttcc caaatgaagt gggggcaaga 540 atactgacat cagagtcaca gctggcaata acaaaagaga agaaagaaga gctccagaat 600 tgtaaaattg ctcccttgat ggtggcgtac atgctagaaa gagaattggt ccgtaaaaca 660 aggtttctcc cagtagccgg tgggacaagc agtgtttata ttgaggtgtt gcacttgacc 720 caagggacgt gctgggagca gatgtacact ccaggaggag aagtgagaaa tgatgatgtt 780 gaccaaagct tgattatcgc tgctagaaac atagtaagaa gagcagcagt gtcagcagac 840 ccattagcat ctctcttgga aatgtgccac agcacacaga ttggaggtgt gaagatggtg 900 gacatcctta aacagaatcc aactgaggag caagccgtag acatatgcaa ggcagcaata 960 gggttgagga tcagctcatc tttcagtttt ggtgggttca ctttcaaaag gacaagcgga 1020 tcatcagtca agaaagaaga agaaatgcta acgggcaacc tccaaacact gaaattaaga 1080 gtacatgaag ggtatgaaga attcacaatg gttgggagaa gagcaacagc tattctcaga 1140 aaggcaacca ggagattgat ccaattaata gtaagcggga gagacgagca gtcaatagct 1200 gaagcaataa ttgtggccat ggttttctca caagaggatt gcatgatcaa agcagttagg 1260 ggcgatctga actttgtcaa tagggcaaac cagagactga atcccatgca ccaactcttg 1320 aggcatttcc aaaaagatgc aaaggtgctt ttccagaact ggggaattga aaccatcgac 1380 aatgtgatgg gaatgatcgg aatactgccc gacatgaccc caagcacgga gatgtcactg 1440 agaggaataa gagtcagcaa gatgggagta gatgaatact ccagcacgga gagagtggta 1500 gtgagtattg accgattttt gagggttaga gatcaaagag gaaacgtact attgtctccc 1560 gaagaagtca gtgaaacgca aggaactgag aagttgacaa taacttattc gtcatcaatg 1620 atgtgggaaa tcaacggccc tgagtcagtg ctagtcaaca cttatcaatg gataatcaga 1680 aactgggaaa ttgtgaaaat tcaatggtca caagacccca caatgttata caacaaaatg 1740 gaatttgaac catttcagtc tcttgttcct aaggcaacca gaagccggta cagtggattc 1800 gtaaggacac tgttccagca aatgagggat gtgcttggga catttgacac tgtccaaata 1860 ataaaacttc tcccctttgc tgctgctcca ccagaacaga gcaggatgca attttcttca 1920 ttgactgtga atgtgagagg atcagggtta aggatactgg taagaggcaa ttctccagta 1980 ttcaattaca acaaggcaac caaacgactt acgattcttg gaaaggatgc aggtgcattg 2040 actgaagatc cagatgaagg cacatctggg gtggagtctg ctgtcctgag gggattcctc 2100 attttaggca aagaagacaa gagatatggc ccagcattaa gcatcaatga actgagcaat 2160 cttgcaaaag gagagaaagc taatgtgcta attgggcagg gggacatagt gttggtaatg 2220 aaacgaaaac gggactctag catacttact gacagccaga cagcgaccaa aagaattcga 2280 atggccatca attagtgtcg aattgtttaa aaacga 2316 // ID MT167215; SV 1; linear; viral cRNA; STD; VRL; 2316 BP. XX AC MT167215; XX PR Project:PRJNA37813; XX DT 17-MAR-2020 (Rel. 144, Created) DT 17-MAR-2020 (Rel. 144, Last updated, Version 1) XX DE Influenza A virus (A/Arizona/02/2020(H1N1)) segment 2 polymerase PB1 (PB1) DE gene, complete cds; and nonfunctional PB1-F2 protein (PB1-F2) gene, DE complete sequence. XX KW . XX OS Influenza A virus OC Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Insthoviricetes; OC Articulavirales; Orthomyxoviridae; Alphainfluenzavirus. XX RN [1] RP 1-2316 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT "Influenza Sequencing Activity group"; RL Unpublished. XX RN [2] RP 1-2316 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT ; RL Submitted (09-MAR-2020) to the INSDC. RL WHO Collaborating Center for Surveillance, Epidemiology and Control of RL Influenza, Influenza Division, Centers for Disease Control and Prevention, RL 1600 Clifton Road, N.E., Atlanta, GA 30333, USA XX DR MD5; 24af13b2fbd9976bbb84f6ee2738214b. XX CC ##FluData-START## CC EPI_ISOLATE_ID :: EPI_ISL_409755 CC NAME :: A/Arizona/02/2020 CC TYPE :: H1N1 CC Segment_name :: PB1 CC HOST_AGE :: 58 CC HOST_GENDER :: F CC PASSAGE :: Original CC LOCATION :: United States / Arizona CC COLLECT_DATE :: 09-Jan-2020 CC Lineage :: A(H1N1)pdm09 CC RESIST_TO_OSELTAMIVIR :: Sensitive CC RESIST_TO_ZANAMVIR :: Sensitive CC SPECIMEN_ID :: AZ00094188 ORIGINAL CC SENDER_LAB :: Arizona Departmentment of Health Services CC SEQLAB_SAMPLE_ID :: 3026054669 CC EPI_SEQUENCE_ID :: EPI1688837 CC ##FluData-END## XX FH Key Location/Qualifiers FH FT source 1..2316 FT /organism="Influenza A virus" FT /segment="2" FT /host="Homo sapiens" FT /strain="A/Arizona/02/2020" FT /serotype="H1N1" FT /mol_type="viral cRNA" FT /country="USA:Arizona" FT /collection_date="09-Jan-2020" FT /db_xref="taxon:11320" FT gene 13..2286 FT /gene="PB1" FT CDS 13..2286 FT /codon_start=1 FT /gene="PB1" FT /product="polymerase PB1" FT /protein_id="QIJ23713.1" FT /translation="MDVNPTLLFLKIPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNR FT THQYSEKGKWTTNTETGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFE FT NSCLETMEVVQQTRVDKLTQGRQTYDWTLNRNQPAATALANTIEVFRSNDLTANESGRL FT IDFLKDVMESVNKEEIEITTHFQRKRRVRDNMTKKMITQRTIGKKKQRLNKRGYLIRAL FT TLNTMTKDAERGKLKRRAIATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAK FT LANVVRKMMTNSQDTEISFTITGDNTKWNENQNPRMFLAMITYITRNQPEWFRNILSMA FT PIMFSNKMARLGKGYMFESKRMKIRTQIPAEMLASIDLKYFNESTRKKIEKIRPLLMDG FT TASLSPGMMMGMFNMLSTVLGVSILNLGQKKYTKTTYWWDGLQSSDDFALIVNAPNHEG FT IQAGVDRFYRTCKLVGINMSKKKSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSGV FT NESADMSIGVTVIKNNMINNDLGPATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFEL FT KKLWDQTQSKVGLLVSDGGPNLYNIRNLHIPEVCLKWELMDDDYRGRLCNPLNPFVSHK FT EIDSVNNAVVMPAHGPAKSMEYDAVATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCN FT LFEKFFPSSSYRRPVGISSMVEAMVSRARIDARVDFESGRIKKEEFSEIMKICSTIEEL FT RRQK" FT gene 107..379 FT /gene="PB1-F2" FT misc_feature 107..379 FT /gene="PB1-F2" FT /note="nonfunctional PB1-F2 protein due to mutation" XX SQ Sequence 2316 BP; 831 A; 436 C; 519 G; 530 T; 0 other; caaaccattt gaatggatgt caatccgact ctacttttcc taaaaattcc agcacaaaat 60 gccataagca ccacattccc ttatactgga gatcctccat acagccatgg aacaggaaca 120 ggatacacca tggacacagt aaacagaaca caccaatact cagaaaaggg gaagtggaca 180 acaaacacag aaactggtgc accccagctc aacccgattg acggaccact acccgaagat 240 aatgaaccaa gtgggtatgc acaaacagac tgtgttctag aggctatggc tttccttgaa 300 gaatcccatc caggaatatt tgaaaattca tgccttgaaa caatggaagt tgttcaacaa 360 acaagggtag ataaactgac tcaaggtcgc cagacttatg attggacatt aaacagaaat 420 caaccggcag caactgcatt ggccaacacc atagaagttt tcagatcgaa tgacctaaca 480 gctaacgagt caggaaggct aatagatttc ttaaaggatg tgatggaatc agtgaacaaa 540 gaggaaatag agataacaac ccactttcaa agaaaaagga gagtaagaga caacatgacc 600 aagaagatga tcacgcaaag aacaataggg aagaaaaaac agagactgaa taagagaggc 660 tatctaataa gagcactgac attaaatacg atgaccaaag atgcagagag aggcaagtta 720 aaaagaaggg ctatcgcaac acctgggatg cagattagag gtttcgtata ctttgttgaa 780 actttagcta ggagcatttg cgaaaagctt gaacagtctg ggctcccagt agggggcaat 840 gaaaagaagg ccaaattggc aaatgttgtg agaaagatga tgactaattc acaagataca 900 gagatttctt tcacaatcac tggggacaac actaaatgga atgagaatca aaatcctcga 960 atgttcctgg cgatgattac atatatcacc agaaatcaac ccgagtggtt tagaaacatc 1020 ctgagcatgg cacccataat gttctcaaat aaaatggcaa ggctaggaaa agggtacatg 1080 ttcgagagta aaagaatgaa aattcgaaca caaataccag cagaaatgct agcaagcatt 1140 gatctaaagt atttcaatga atcaacaagg aagaaaattg agaagataag gcctctttta 1200 atggatggca cagcatcact gagtcctggg atgatgatgg gcatgttcaa catgctaagt 1260 acggtcttgg gagtctcgat actgaatctt ggacaaaaga aatacaccaa gacaacatac 1320 tggtgggatg ggctccaatc atccgacgat tttgctctca tagtgaatgc accaaaccat 1380 gaaggaatac aagcaggagt ggacagattt tacaggacct gcaaattagt gggaatcaac 1440 atgagcaaaa agaagtccta tataaataag acagggacat ttgaattcac aagctttttt 1500 tatcgctatg gatttgtggc taattttagc atggagctac ccagctttgg agtgtctgga 1560 gtaaatgaat cagctgacat gagtattgga gtaacagtga taaagaacaa catgataaac 1620 aatgaccttg gacctgcaac ggctcagatg gctcttcaat tgttcataaa agactacaga 1680 tacacatata ggtgtcatag gggagacaca caaattcaga cgagaagatc atttgagttg 1740 aagaagctat gggatcaaac ccaatcaaag gtagggctat tagtatcaga tggaggacca 1800 aacttataca acatacggaa tcttcacatt cctgaagtct gcttaaaatg ggagctaatg 1860 gatgatgatt atcggggaag actttgtaat cccctgaatc cctttgtgag tcataaggag 1920 attgattctg taaacaatgc tgtggtaatg ccagcccatg gcccagccaa aagcatggaa 1980 tatgatgccg tcgctactac acattcctgg attcccaaga ggaatcgttc tattctcaac 2040 acaagccaaa ggggaattct tgaggatgaa cagatgtacc agaagtgttg caatttattc 2100 gagaaatttt tccctagcag ttcatatagg agaccggttg gaatttctag catggtggag 2160 gccatggtgt ctagggcccg gattgatgcc agagtcgact ttgagtctgg acggattaag 2220 aaagaagagt tctctgagat catgaagatc tgttccacca ttgaagaact cagacggcaa 2280 aaataatgaa tttaacttgt ccttcatgaa aaaatg 2316 // ID MT167216; SV 1; linear; viral cRNA; STD; VRL; 2208 BP. XX AC MT167216; XX PR Project:PRJNA37813; XX DT 17-MAR-2020 (Rel. 144, Created) DT 17-MAR-2020 (Rel. 144, Last updated, Version 1) XX DE Influenza A virus (A/Arizona/02/2020(H1N1)) segment 3 polymerase PA (PA) DE and PA-X protein (PA-X) genes, complete cds. XX KW . XX OS Influenza A virus OC Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Insthoviricetes; OC Articulavirales; Orthomyxoviridae; Alphainfluenzavirus. XX RN [1] RP 1-2208 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT "Influenza Sequencing Activity group"; RL Unpublished. XX RN [2] RP 1-2208 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT ; RL Submitted (09-MAR-2020) to the INSDC. RL WHO Collaborating Center for Surveillance, Epidemiology and Control of RL Influenza, Influenza Division, Centers for Disease Control and Prevention, RL 1600 Clifton Road, N.E., Atlanta, GA 30333, USA XX DR MD5; 582922b581d3149da8297420b398d5a6. XX CC ##FluData-START## CC EPI_ISOLATE_ID :: EPI_ISL_409755 CC NAME :: A/Arizona/02/2020 CC TYPE :: H1N1 CC Segment_name :: PA CC HOST_AGE :: 58 CC HOST_GENDER :: F CC PASSAGE :: Original CC LOCATION :: United States / Arizona CC COLLECT_DATE :: 09-Jan-2020 CC Lineage :: A(H1N1)pdm09 CC RESIST_TO_OSELTAMIVIR :: Sensitive CC RESIST_TO_ZANAMVIR :: Sensitive CC SPECIMEN_ID :: AZ00094188 ORIGINAL CC SENDER_LAB :: Arizona Departmentment of Health Services CC SEQLAB_SAMPLE_ID :: 3026054669 CC EPI_SEQUENCE_ID :: EPI1688835 CC ##FluData-END## XX FH Key Location/Qualifiers FH FT source 1..2208 FT /organism="Influenza A virus" FT /segment="3" FT /host="Homo sapiens" FT /strain="A/Arizona/02/2020" FT /serotype="H1N1" FT /mol_type="viral cRNA" FT /country="USA:Arizona" FT /collection_date="09-Jan-2020" FT /db_xref="taxon:11320" FT gene 13..2163 FT /gene="PA" FT CDS 13..2163 FT /codon_start=1 FT /gene="PA" FT /product="polymerase PA" FT /protein_id="QIJ23714.1" FT /translation="MEDFVRQCFNPMIVELAEKAMKEYGEDPKIETNKFAAICTHLEVC FT FMYSDFHFIDERGESIILESGDPNALLKHRFEIIEGRDRIMAWTVVNSICNTTGIEKPK FT FLPDLYDYKENRFIEIGVTRREVHIYYLEKANKIKSEKTHIHIFSFTGEEMATKADYTL FT DEESRARIKTRLFTIRQEMASRSLWDSFRQSERGEETIEEKFEITGTMRRLADQSLPPN FT FSCLENFRAYVDGFEPNGCIEGKLSQMSKEVNAKIEPFLRTTPRPLRLPDGPLCHQRSK FT FLLMDALKLSIEDPSHEGEGIPLYDAIKCMKTFFGWKEPKIVKPHEKGVNPNYLMAWKQ FT VLAELQDIENEEKIPRTKNMKKTSQLKWALGENMAPEKVDFDDCKDVGDLKQYDSDEPE FT PRSLASWVQNEFNKACELTDSSWIELDEIGEDVAPIEHIASMRRNYFTAEVSHCRATEY FT IMKGVYINTALLNASCAAMDDFQLIPMISKCRTKEGRRKTNLYGFIVKGRSHLRNDTDV FT VNFVSMEFSLTDPRLEPHKWEKYCVLEIGDMLLRTAIGQVSRPMFLYVRTNGTSKIKMK FT WGMEMRRCLLQSLQQIESMIEAESSVKEKDMTKEFFENKSETWPIGESPRGVEEGSIGK FT VCRTLLAKSVFNSLYASPQLEGFSAESRKLLLIVQALRDNLEPGTFDLGGLYEAIEECL FT INDPWVLLNASWFNSFLTHALK" FT gene 13..712 FT /gene="PA-X" FT CDS join(13..582,584..712) FT /codon_start=1 FT /ribosomal_slippage FT /gene="PA-X" FT /product="PA-X protein" FT /protein_id="QIJ23715.1" FT /translation="MEDFVRQCFNPMIVELAEKAMKEYGEDPKIETNKFAAICTHLEVC FT FMYSDFHFIDERGESIILESGDPNALLKHRFEIIEGRDRIMAWTVVNSICNTTGIEKPK FT FLPDLYDYKENRFIEIGVTRREVHIYYLEKANKIKSEKTHIHIFSFTGEEMATKADYTL FT DEESRARIKTRLFTIRQEMASRSLWDSFVSPKEAKKQLKKSLKLQELCAGLPTKVSHQT FT SPALKTSEPM" XX SQ Sequence 2208 BP; 739 A; 423 C; 518 G; 527 T; 1 other; tactgatcca aaatggaaga ctttgtgcga caatgcttca atccaatgat cgtcgagctt 60 gcggaaaagg caatgaaaga atatggggaa gaccccaaaa ttgaaactaa taagtttgct 120 gcaatttgca cacatttgga agtttgtttc atgtattcgg atttccattt cattgatgaa 180 cggggtgaat caataatttt agaatctggt gacccaaatg cactattgaa gcaccgattt 240 gagataattg aaggaagaga ccgaatcatg gcctggacag tggtgaacag tatatgtaac 300 acaacaggga tagagaagcc taaatttctt cctgatttgt atgattacaa agagaaccgg 360 ttcattgaaa ttggagtaac acggagagaa gtccacatat attacctaga gaaagccaac 420 aaaataaaat ctgagaagac acacattcac atcttttcat tcactggaga ggagatggcc 480 accaaagcgg actacaccct tgacgaagaa agcagagcaa gaatcaaaac taggcttttc 540 actataagac aagaaatggc cagtaggagt ctatgggatt cctttcgtca gtccgaaaga 600 ggcgaagaaa caattgaaga aaagtttgaa attacaggaa ctatgcgcag gcttgccgac 660 caaagtctcc caccaaactt ctcctgcctt gaaaacttca gagcctatgt agatggattc 720 gagccgaacg gctgcattga gggcaagctt tcccaaatgt caaaagaagt gaacgccaaa 780 attgaaccat tcttgaggac gacaccacgc cccctcagat tacctgatgg acctctttgc 840 catcagcggt caaagtttct gctgatggat gctctgaaat taagcattga agacccgagt 900 cacgaggggg aaggaatacc actatatgat gcaatcaaat gcatgaagac attctttggc 960 tggaaagagc ctaaaatagt caaaccacat gagaaaggcg taaatcccaa ttacctcatg 1020 gcttggaagc aggtgctagc agagctacag gacattgaga atgaagagaa aatcccaagg 1080 acaaagaaca tgaagaaaac aagccaattg aagtgggcac tcggtgaaaa tatggcacct 1140 gaaaaagtgg actttgatga ctgtaaagat gttggagacc ttaaacagta tgacagtgat 1200 gagccagagc ccagatctct agcaagctgg gtccaaaatg aattcaataa ggcatgtgaa 1260 ttgactgatt caagctggat agaacttgat gaaataggag aagatgttgc cccgattgaa 1320 catatagcaa gcatgaggag gaactatttc acagcagaag tgtcccactg cagggctact 1380 gaatacataa tgaagggagt gtacataaat acggccttgc ttaatgcatc ctgtgcagcc 1440 atggatgact ttcagctgat tccaatgata agcaaatgta ggaccaaaga aggaagacgg 1500 aaaacaaacc tgtatgggtt cattgtaaaa ggaaggtctc atttgagaaa tgatactgat 1560 gtagtgaact ttgtaagtat ggagttctca ctcactgatc caagactgga accacacaaa 1620 tgggaaaaat actgtgttct tgaaatagga gacatgctat tgaggactgc gataggtcaa 1680 gtgtcgaggc ccatgttcct atatgtgaga accaatggaa cctccaagat caagatgaaa 1740 tggggcatgg aaatgaggcg ctgccttctt caatctcttc aacagattga gagcatgatt 1800 gaagccgagt cttctgtcaa agagaaagac atgaccaagg aattctttga aaacaaatcg 1860 gaaacatggc caatcggaga gtcacccagg ggagtggagg aaggctctat tggaaaagtr 1920 tgcagaacct tactggcaaa atctgtgttc aacagtctat atgcttctcc acaacttgag 1980 gggttttcgg ctgaatcaag aaaattgctt ctcattgttc aggcacttag ggacaacctg 2040 gaacctggaa cctttgatct tggggggcta tatgaagcaa tcgaggagtg cttgattaat 2100 gatccctggg ttttgcttaa tgcatcttgg ttcaactcct tcctcacaca tgcactgaag 2160 tagttgtggc aatgctacta tttgctatcc atattgtcca aaaaagta 2208 // ID MT167217; SV 1; linear; viral cRNA; STD; VRL; 1752 BP. XX AC MT167217; XX PR Project:PRJNA37813; XX DT 17-MAR-2020 (Rel. 144, Created) DT 17-MAR-2020 (Rel. 144, Last updated, Version 1) XX DE Influenza A virus (A/Arizona/02/2020(H1N1)) segment 4 hemagglutinin (HA) DE gene, complete cds. XX KW . XX OS Influenza A virus OC Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Insthoviricetes; OC Articulavirales; Orthomyxoviridae; Alphainfluenzavirus. XX RN [1] RP 1-1752 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT "Influenza Sequencing Activity group"; RL Unpublished. XX RN [2] RP 1-1752 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT ; RL Submitted (09-MAR-2020) to the INSDC. RL WHO Collaborating Center for Surveillance, Epidemiology and Control of RL Influenza, Influenza Division, Centers for Disease Control and Prevention, RL 1600 Clifton Road, N.E., Atlanta, GA 30333, USA XX DR MD5; 7f75f91f0a664ce6f38c8e557dda30d1. XX CC ##FluData-START## CC EPI_ISOLATE_ID :: EPI_ISL_409755 CC NAME :: A/Arizona/02/2020 CC TYPE :: H1N1 CC Segment_name :: HA CC HOST_AGE :: 58 CC HOST_GENDER :: F CC PASSAGE :: Original CC LOCATION :: United States / Arizona CC COLLECT_DATE :: 09-Jan-2020 CC Lineage :: A(H1N1)pdm09 CC RESIST_TO_OSELTAMIVIR :: Sensitive CC RESIST_TO_ZANAMVIR :: Sensitive CC SPECIMEN_ID :: AZ00094188 ORIGINAL CC SENDER_LAB :: Arizona Departmentment of Health Services CC SEQLAB_SAMPLE_ID :: 3026054669 CC EPI_SEQUENCE_ID :: EPI1688839 CC ##FluData-END## XX FH Key Location/Qualifiers FH FT source 1..1752 FT /organism="Influenza A virus" FT /segment="4" FT /host="Homo sapiens" FT /strain="A/Arizona/02/2020" FT /serotype="H1N1" FT /mol_type="viral cRNA" FT /country="USA:Arizona" FT /collection_date="09-Jan-2020" FT /db_xref="taxon:11320" FT gene 21..1721 FT /gene="HA" FT CDS 21..1721 FT /codon_start=1 FT /gene="HA" FT /product="hemagglutinin" FT /function="receptor binding and fusion protein" FT /protein_id="QIJ23716.1" FT /translation="MKAILVVMLYTFTTANADTLCIGYHANNSTDTVDTVLEKNVTVTH FT SVNLLEDKHNGKLCKLRGVAPLHLGKCNIAGWILGNPECESLSTARSWSYIVETSNSDN FT GTCYPGDFINYEELREQLSSVSSFERFEIFPKTSSWPNHDSDNGVTAACPHAGAKSFYK FT NLIWLVKKGKSYPKINQTYINDKGKEVLVLWGIHHPPTIADQQSLYQNADAYVFVGTSR FT YSKMFKPEIATRPKVRDQEGRMNYYWTLVEPGDKITFEATGNLVAPRYAFTMERDAGSG FT IIISDTPVHDCNTTCQTPEGAINTSLPFQNVHPITIGKCPKYVKSTKLRLATGLRNVPS FT IQSRGLFGAIAGFIEGGWTGMVDGWYGYHHQNEQGSGYAADLKSTQNAIDKITNKVNSV FT IEKMNTQFTAVGKEFNHLEKRIENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSN FT VKNLYEKVRNQLKNNAKEIGNGCFEFYHKCDNTCMESVKNGTYDYPKYSEEAKLNREKI FT DGVKLDSTRIYQILAIYSTVASSLVLVVSLGAISFWMCSNGSLQCRICI" FT sig_peptide 21..71 FT /gene="HA" FT mat_peptide 72..1052 FT /gene="HA" FT /product="HA1" FT mat_peptide 1053..1718 FT /gene="HA" FT /product="HA2" XX SQ Sequence 1752 BP; 628 A; 329 C; 384 G; 411 T; 0 other; ggaaaacaaa agcaacaaaa atgaaggcaa tactagtagt tatgctgtat acatttacaa 60 ccgcaaatgc agacacatta tgtataggtt atcatgcgaa caattcaaca gacactgtgg 120 acacagtact agaaaagaat gtaacagtaa cacactctgt caatcttctg gaagacaagc 180 ataacggaaa actatgcaaa ctaagagggg tagccccatt gcatttgggt aaatgtaaca 240 ttgctggctg gatcctggga aatccagagt gtgaatcact ctccacagca agatcatggt 300 cctacattgt ggaaacatct aattcagaca atggaacgtg ttacccagga gatttcatca 360 attatgagga gctaagagag caattgagct cagtgtcatc atttgaaagg tttgaaatat 420 tccccaagac aagttcatgg cctaatcatg actcggacaa tggtgtaacg gcagcatgtc 480 ctcacgctgg agcaaaaagc ttctacaaaa acttgatatg gctggttaaa aaaggaaaat 540 catacccaaa gatcaaccaa acctacatta atgataaagg gaaagaagtc ctcgtgctgt 600 ggggcattca ccatccacct actattgctg accaacaaag tctctatcag aatgcagatg 660 catatgtttt tgtggggaca tcaagataca gcaagatgtt caagccggaa atagcaacaa 720 gacccaaagt gagggatcaa gaagggagaa tgaactatta ctggacacta gtagaaccgg 780 gagacaaaat aacattcgaa gcaactggta atctagtggc accgagatat gcattcacaa 840 tggaaagaga tgctggatct ggtattatca tttcagatac accagtccac gattgcaata 900 caacttgtca aacacccgag ggtgctataa acaccagcct cccatttcag aatgtacatc 960 cgatcacaat tgggaaatgt ccaaagtatg taaaaagcac aaaattgaga ctggccacag 1020 gattgaggaa tgtcccgtct attcaatcta gaggcctatt cggggccatt gctggcttca 1080 tcgaaggggg gtggacaggg atggtagatg gatggtacgg ttatcaccat caaaatgagc 1140 aggggtcagg atatgcagcc gatctgaaga gcacacaaaa tgccattgat aagattacta 1200 acaaagtaaa ttctgttatt gaaaagatga atacacagtt cacagcagtt ggtaaagagt 1260 tcaaccacct tgaaaaaaga atagagaatc taaataaaaa ggttgatgat ggtttcctgg 1320 acatttggac ttacaatgcc gaactgttgg ttctactgga aaacgaaaga actttggact 1380 atcacgattc aaatgtgaag aacttgtatg aaaaagtaag aaaccagtta aaaaacaatg 1440 ccaaggaaat tggaaacggc tgctttgaat tttaccacaa atgcgacaac acatgcatgg 1500 aaagtgtcaa gaatgggact tatgactacc caaaatactc agaggaagca aaattaaaca 1560 gagaaaaaat agatggagta aagctggact caacaaggat ctaccagatt ttggcgatct 1620 attcaactgt tgccagttca ttggtactgg tagtctccct gggggcaatc agcttctgga 1680 tgtgctctaa tgggtctcta cagtgtagaa tatgtattta acattaggat ttcagaatca 1740 tgagaaaaac ac 1752 // ID MT167218; SV 1; linear; viral cRNA; STD; VRL; 1540 BP. XX AC MT167218; XX PR Project:PRJNA37813; XX DT 17-MAR-2020 (Rel. 144, Created) DT 17-MAR-2020 (Rel. 144, Last updated, Version 1) XX DE Influenza A virus (A/Arizona/02/2020(H1N1)) segment 5 nucleocapsid protein DE (NP) gene, complete cds. XX KW . XX OS Influenza A virus OC Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Insthoviricetes; OC Articulavirales; Orthomyxoviridae; Alphainfluenzavirus. XX RN [1] RP 1-1540 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT "Influenza Sequencing Activity group"; RL Unpublished. XX RN [2] RP 1-1540 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT ; RL Submitted (09-MAR-2020) to the INSDC. RL WHO Collaborating Center for Surveillance, Epidemiology and Control of RL Influenza, Influenza Division, Centers for Disease Control and Prevention, RL 1600 Clifton Road, N.E., Atlanta, GA 30333, USA XX DR MD5; e3558d79aad9e8ca8bdb0567cdedb14c. XX CC ##FluData-START## CC EPI_ISOLATE_ID :: EPI_ISL_409755 CC NAME :: A/Arizona/02/2020 CC TYPE :: H1N1 CC Segment_name :: NP CC HOST_AGE :: 58 CC HOST_GENDER :: F CC PASSAGE :: Original CC LOCATION :: United States / Arizona CC COLLECT_DATE :: 09-Jan-2020 CC Lineage :: A(H1N1)pdm09 CC RESIST_TO_OSELTAMIVIR :: Sensitive CC RESIST_TO_ZANAMVIR :: Sensitive CC SPECIMEN_ID :: AZ00094188 ORIGINAL CC SENDER_LAB :: Arizona Departmentment of Health Services CC SEQLAB_SAMPLE_ID :: 3026054669 CC EPI_SEQUENCE_ID :: EPI1688832 CC ##FluData-END## XX FH Key Location/Qualifiers FH FT source 1..1540 FT /organism="Influenza A virus" FT /segment="5" FT /host="Homo sapiens" FT /strain="A/Arizona/02/2020" FT /serotype="H1N1" FT /mol_type="viral cRNA" FT /country="USA:Arizona" FT /collection_date="09-Jan-2020" FT /db_xref="taxon:11320" FT gene 34..1530 FT /gene="NP" FT CDS 34..1530 FT /codon_start=1 FT /gene="NP" FT /product="nucleocapsid protein" FT /protein_id="QIJ23717.1" FT /translation="MASQGTKRSYEQMETGGERQDTTEIRASVGRMIGGIGRFYIQMCT FT ELKLSDYDGRLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRIDGKW FT TRELILYDKEEIRRVWRQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRM FT CSLMQGSTLPRRSGAAGAAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTRVAYERM FT CNILKGKFQTAAQRAMMDQVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVY FT GLAVASGHDFEREGYSLVGIDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFED FT LRVSSFIRGKKVIPRGKLSTRGVQIASNENVETMDSNTLELRSRYWAIRTRSGGNTNQQ FT KASAGQISVQPTFSVQRNLPFERATIMAAFSGNNEGRTSDMRTEVIRMMESAKPEDLSF FT QGRGVFELSDEKATNPIVPSFDMSNEGSYFFGDNAEEYDN" XX SQ Sequence 1540 BP; 523 A; 296 C; 395 G; 326 T; 0 other; gtagataatc actcaatgag tgacatcgaa gccatggcgt ctcaaggcac caaacgatca 60 tatgaacaaa tggagactgg tggggagcgc caggatacca cagaaatcag agcatctgtt 120 ggaagaatga ttggtggaat cgggagattc tacatccaaa tgtgcactga actaaaactc 180 agtgattatg atggacgact aatccagaac agcataacaa tagagaggat ggtgctttct 240 gcttttgatg agagaagaaa taaataccta gaagagcatc caagtgctgg gaaggaccct 300 aagaaaacag gaggacccat ctatagaaga atagacggaa aatggacaag agaactcatc 360 ctttatgaca aagaagaaat aaggagagtt tggcgccaag caaacaatgg cgaagatgca 420 acagcaggtc ttactcatat catgatttgg cattccaatc tgaatgatgc cacatatcag 480 aggacaagag cacttgttcg cactggaatg gatcccagaa tgtgctctct aatgcaaggt 540 tcaacacttc ccaggaggtc tggtgccgca ggtgctgcag taaaaggagt tggaacaata 600 gctatggagt taatcagaat gataaaacgt ggaatcaatg accgaaattt ctggaggggt 660 gaaaatggac gaaggacaag agttgcttat gaaagaatgt gcaatatcct caaaggaaaa 720 tttcaaacag ctgcccagag ggcaatgatg gatcaagtaa gggaaagtcg aaacccagga 780 aacgctgaga ttgaagacct cattttcctg gcacggtcag cactcattct gagaggatca 840 gttgcacata aatcctgcct gcctgcttgt gtgtatgggc ttgcagtagc aagtggccat 900 gactttgaaa gggaagggta ctcattggtc gggatagacc cattcaaatt actccaaaac 960 agtcaagtgg tcagcctgat gagaccaaat gaaaatccag ctcacaagag tcaattggta 1020 tggatggcat gccactctgc tgcatttgaa gatttaagag tatcaagttt cataagagga 1080 aagaaagtga tcccaagagg aaagctttcc acaagagggg ttcagattgc ttcaaatgag 1140 aatgtggaaa ccatggactc caatactctg gaactaagaa gcagatactg ggccataaga 1200 accaggagtg gaggaaatac caatcaacag aaggcatctg caggccagat cagtgtgcag 1260 cctacattct cagtgcagcg aaatctcccc tttgaaagag caaccattat ggcagcattc 1320 agcgggaaca atgaaggacg gacatccgac atgcgaacag aagttataag aatgatggaa 1380 agtgcaaagc cagaggattt gtccttccag gggcggggag tcttcgagct ctcggacgaa 1440 aaggcaacga acccgatcgt gccttccttt gacatgagta atgaagggtc ttatttcttc 1500 ggagacaatg cagaggagta tgacaattga agaaaaatac 1540 // ID MT167219; SV 1; linear; viral cRNA; STD; VRL; 1433 BP. XX AC MT167219; XX PR Project:PRJNA37813; XX DT 17-MAR-2020 (Rel. 144, Created) DT 17-MAR-2020 (Rel. 144, Last updated, Version 1) XX DE Influenza A virus (A/Arizona/02/2020(H1N1)) segment 6 neuraminidase (NA) DE gene, complete cds. XX KW . XX OS Influenza A virus OC Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Insthoviricetes; OC Articulavirales; Orthomyxoviridae; Alphainfluenzavirus. XX RN [1] RP 1-1433 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT "Influenza Sequencing Activity group"; RL Unpublished. XX RN [2] RP 1-1433 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT ; RL Submitted (09-MAR-2020) to the INSDC. RL WHO Collaborating Center for Surveillance, Epidemiology and Control of RL Influenza, Influenza Division, Centers for Disease Control and Prevention, RL 1600 Clifton Road, N.E., Atlanta, GA 30333, USA XX DR MD5; bb73daedaa4f942184a143ee7b5a8af2. XX CC ##FluData-START## CC EPI_ISOLATE_ID :: EPI_ISL_409755 CC NAME :: A/Arizona/02/2020 CC TYPE :: H1N1 CC Segment_name :: NA CC HOST_AGE :: 58 CC HOST_GENDER :: F CC PASSAGE :: Original CC LOCATION :: United States / Arizona CC COLLECT_DATE :: 09-Jan-2020 CC Lineage :: A(H1N1)pdm09 CC RESIST_TO_OSELTAMIVIR :: Sensitive CC RESIST_TO_ZANAMVIR :: Sensitive CC SPECIMEN_ID :: AZ00094188 ORIGINAL CC SENDER_LAB :: Arizona Departmentment of Health Services CC SEQLAB_SAMPLE_ID :: 3026054669 CC EPI_SEQUENCE_ID :: EPI1688838 CC ##FluData-END## XX FH Key Location/Qualifiers FH FT source 1..1433 FT /organism="Influenza A virus" FT /segment="6" FT /host="Homo sapiens" FT /strain="A/Arizona/02/2020" FT /serotype="H1N1" FT /mol_type="viral cRNA" FT /country="USA:Arizona" FT /collection_date="09-Jan-2020" FT /db_xref="taxon:11320" FT gene 9..1418 FT /gene="NA" FT CDS 9..1418 FT /codon_start=1 FT /gene="NA" FT /product="neuraminidase" FT /protein_id="QIJ23718.1" FT /translation="MNPNQKIITIGSICMTIGTANLILQIGNIISIWVSHSIQIGNQSQ FT IETCNKSVITYENNTWVNQTFVNISNINSAARQSVASVKLAGNSSLCPVSGWAIYSKDN FT SVRIGSKGDVFVIREPFISCSPLECRTFFLTQGALLNDKHSNGTIKDRSPYRTLMSCPI FT GEVPSPYNSRFESVAWSASACHDGTNWLTIGISGPDSGAVAVLKYNGIITDTIKSWRNK FT ILRTQESECACVNGSCFTIMTDGPSDGQASYKIFRIEKGKIIKSVEMKAPNYHYEECSC FT YPDSSEITCVCRDNWHGSNRPWVSFNQNLEYQMGYICSGVFGDNPRPNDKTGSCGPVSS FT NGANGVKGFSFKYGNGVWIGRTKSISSRKGFEMIWDPNGWTGTDNKFSKKQDIVGINEW FT SGYSGSFVQHPELTGLNCIRPCFWVELIRGRPEENTIWTSGSSISFCGVDSDIVGWSWP FT DGAELPFTIDK" XX SQ Sequence 1433 BP; 465 A; 260 C; 332 G; 376 T; 0 other; agtttaaaat gaatccaaac caaaagataa taaccattgg ttctatctgt atgacaattg 60 gaacggctaa cttaatatta caaattggaa acataatctc aatatgggtt agccactcaa 120 ttcaaattgg aaatcaaagc cagattgaaa catgcaataa aagcgtcatt acttatgaaa 180 acaacacttg ggtaaatcag acatttgtta acatcagcaa cattaactct gctgctagac 240 agtcagtggc ttccgtgaaa ttagcgggca attcctctct ctgccctgtt agtggatggg 300 ctatatacag taaagacaac agtgtaagaa tcggttccaa gggggatgtg tttgtcataa 360 gggaaccatt catatcatgc tctcccttgg aatgcagaac cttcttcttg actcaagggg 420 ctttgctaaa tgacaaacat tccaatggaa ccattaaaga cagaagccca tatcgaaccc 480 taatgagctg tcctattggt gaagttccct ctccatacaa ctcaagattt gagtcagtcg 540 cttggtcagc aagtgcttgt catgatggca ccaattggct aacaattgga atttctggcc 600 cagacagtgg ggcagtggct gtgttaaaat acaatggcat aataacagac actatcaaga 660 gttggaggaa caagatattg agaacacaag agtctgaatg tgcatgtgta aatggttctt 720 gctttaccat aatgaccgat ggaccaagtg atggacaggc ctcatacaaa atcttcagaa 780 tagaaaaggg aaagataatc aaatcagtcg aaatgaaagc ccctaattat cactatgaag 840 aatgctcctg ttaccctgat tctagtgaaa tcacatgtgt gtgcagggat aactggcatg 900 gctcgaatcg accgtgggtg tctttcaacc agaatctgga atatcagatg ggatacatat 960 gcagtggggt tttcggagac aatccacgcc ctaatgataa gacaggcagt tgtggtccag 1020 tatcgtctaa tggagcaaat ggggtaaaag gattttcatt caaatacggc aatggtgttt 1080 ggatagggag aactaagagc attagttcaa gaaaaggttt tgagatgatt tgggatccga 1140 atggatggac tgggactgac aataaattct caaaaaagca agatatcgta ggaataaatg 1200 agtggtcagg gtatagcggg agttttgttc agcatccaga actaacaggg ctgaattgta 1260 taagaccttg cttctgggtt gaactaataa gaggacgacc cgaagagaac acaatctgga 1320 ctagcggaag cagcatatcc ttttgtggtg tagacagtga cattgtgggt tggtcttggc 1380 cagacggtgc tgagttgcca tttaccattg acaagtaatt tgttcaaaaa act 1433 // ID MT167220; SV 1; linear; viral cRNA; STD; VRL; 1002 BP. XX AC MT167220; XX PR Project:PRJNA37813; XX DT 17-MAR-2020 (Rel. 144, Created) DT 17-MAR-2020 (Rel. 144, Last updated, Version 1) XX DE Influenza A virus (A/Arizona/02/2020(H1N1)) segment 7 matrix protein 2 (M2) DE and matrix protein 1 (M1) genes, complete cds. XX KW . XX OS Influenza A virus OC Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Insthoviricetes; OC Articulavirales; Orthomyxoviridae; Alphainfluenzavirus. XX RN [1] RP 1-1002 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT "Influenza Sequencing Activity group"; RL Unpublished. XX RN [2] RP 1-1002 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT ; RL Submitted (09-MAR-2020) to the INSDC. RL WHO Collaborating Center for Surveillance, Epidemiology and Control of RL Influenza, Influenza Division, Centers for Disease Control and Prevention, RL 1600 Clifton Road, N.E., Atlanta, GA 30333, USA XX DR MD5; 582fe512456d38d627c0488dafd75aa2. XX CC ##FluData-START## CC EPI_ISOLATE_ID :: EPI_ISL_409755 CC NAME :: A/Arizona/02/2020 CC TYPE :: H1N1 CC Segment_name :: M CC HOST_AGE :: 58 CC HOST_GENDER :: F CC PASSAGE :: Original CC LOCATION :: United States / Arizona CC COLLECT_DATE :: 09-Jan-2020 CC Lineage :: A(H1N1)pdm09 CC RESIST_TO_OSELTAMIVIR :: Sensitive CC RESIST_TO_ZANAMVIR :: Sensitive CC SPECIMEN_ID :: AZ00094188 ORIGINAL CC SENDER_LAB :: Arizona Departmentment of Health Services CC SEQLAB_SAMPLE_ID :: 3026054669 CC EPI_SEQUENCE_ID :: EPI1688834 CC ##FluData-END## XX FH Key Location/Qualifiers FH FT source 1..1002 FT /organism="Influenza A virus" FT /segment="7" FT /host="Homo sapiens" FT /strain="A/Arizona/02/2020" FT /serotype="H1N1" FT /mol_type="viral cRNA" FT /country="USA:Arizona" FT /collection_date="09-Jan-2020" FT /db_xref="taxon:11320" FT gene 14..995 FT /gene="M2" FT CDS join(14..39,728..995) FT /codon_start=1 FT /gene="M2" FT /product="matrix protein 2" FT /protein_id="QIJ23720.1" FT /translation="MSLLTEVETPTRSEWECRCSGSNDPLVIAANIIGILHLILWITDR FT LFFKCIYRRFKYGLKRGPSTEGVPESMREEYQQEQQSAVDVDDGHFVNIELE" FT gene 14..772 FT /gene="M1" FT CDS 14..772 FT /codon_start=1 FT /gene="M1" FT /product="matrix protein 1" FT /protein_id="QIJ23719.1" FT /translation="MSLLTEVETYVLSIIPSGPLKAEIAQRLESVFAGKNTDLEALMEW FT LKTRPILSPLTKGILGFVFTLTVPSERGLQRRRFIQNALNGNGDPNNMDRAVKLYKKLK FT REITFHGAKEVSLSYSTGALASCMGLIYNRMGTVTTEAAFGLVCATCEQIADSQHRSHR FT QMATTTNPLIRHENRMVLASTTAKAMEQVAGSSEQAAEAMEVANKTRQMVHAMRTIGTH FT PSSSAGLRDDLLENLQAYQKRMGVQMQRFK" XX SQ Sequence 1002 BP; 304 A; 208 C; 250 G; 239 T; 1 other; tagatgttta aagatgagtc ttctaaccga ggtcgaaacg tacgttcttt ctatcatccc 60 gtcaggcccc ctcaaagccg agatcgcaca gagactggaa agtgtctttg caggaaagaa 120 cacagatctt gaggctctca tggaatggct aaagacaaga ccaatcttgt cacctctgac 180 taagggaatt ttaggatttg tgttcacgct caccgtgccc agtgagcgag gactgcagcg 240 tagacgcttt atccaaaatg ccctaaatgg aaatggggac ccgaayaaca tggatagagc 300 agttaaacta tacaagaaac tcaaaagaga aataacgttc catggggcca aagaagtgtc 360 actaagctat tcaactggtg cacttgcaag ttgcatgggc ctcatataca acaggatggg 420 aacagtgacc acagaagctg ctttcggtct agtttgtgcc acttgtgaac agattgctga 480 ttcacagcat cggtctcaca gacaaatggc tactaccaca aatccactaa tcaggcatga 540 aaacagaatg gtgctggcta gcactacggc aaaggctatg gaacaggtgg ctggatcgag 600 tgaacaggca gcggaggcca tggaggttgc taataagact aggcagatgg tacatgcaat 660 gagaactatt ggaactcatc ctagctccag tgctggtcta agagatgacc ttcttgaaaa 720 tttacaggcc taccagaagc gaatgggagt gcagatgcag cggttcaaat gatcctctcg 780 tcattgcagc aaacatcatt gggatcttgc acctgatatt gtggattact gatcgtcttt 840 ttttcaaatg catttatcgt cgctttaaat acggtttgaa aagagggcct tctacggaag 900 gagtgcctga gtccatgagg gaagaatatc aacaggagca gcagagtgct gtggatgttg 960 acgatggtca ttttgtcaac atagagctag agtaaaaaac ta 1002 // ID MT167221; SV 1; linear; viral cRNA; STD; VRL; 865 BP. XX AC MT167221; XX PR Project:PRJNA37813; XX DT 17-MAR-2020 (Rel. 144, Created) DT 17-MAR-2020 (Rel. 144, Last updated, Version 1) XX DE Influenza A virus (A/Arizona/02/2020(H1N1)) segment 8 nuclear export DE protein (NEP) and nonstructural protein 1 (NS1) genes, complete cds. XX KW . XX OS Influenza A virus OC Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Insthoviricetes; OC Articulavirales; Orthomyxoviridae; Alphainfluenzavirus. XX RN [1] RP 1-865 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT "Influenza Sequencing Activity group"; RL Unpublished. XX RN [2] RP 1-865 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT ; RL Submitted (09-MAR-2020) to the INSDC. RL WHO Collaborating Center for Surveillance, Epidemiology and Control of RL Influenza, Influenza Division, Centers for Disease Control and Prevention, RL 1600 Clifton Road, N.E., Atlanta, GA 30333, USA XX DR MD5; e33a3442a3b2868ee71d6a5716aa8b58. XX CC ##FluData-START## CC EPI_ISOLATE_ID :: EPI_ISL_409755 CC NAME :: A/Arizona/02/2020 CC TYPE :: H1N1 CC Segment_name :: NS CC HOST_AGE :: 58 CC HOST_GENDER :: F CC PASSAGE :: Original CC LOCATION :: United States / Arizona CC COLLECT_DATE :: 09-Jan-2020 CC Lineage :: A(H1N1)pdm09 CC RESIST_TO_OSELTAMIVIR :: Sensitive CC RESIST_TO_ZANAMVIR :: Sensitive CC SPECIMEN_ID :: AZ00094188 ORIGINAL CC SENDER_LAB :: Arizona Departmentment of Health Services CC SEQLAB_SAMPLE_ID :: 3026054669 CC EPI_SEQUENCE_ID :: EPI1688833 CC ##FluData-END## XX FH Key Location/Qualifiers FH FT source 1..865 FT /organism="Influenza A virus" FT /segment="8" FT /host="Homo sapiens" FT /strain="A/Arizona/02/2020" FT /serotype="H1N1" FT /mol_type="viral cRNA" FT /country="USA:Arizona" FT /collection_date="09-Jan-2020" FT /db_xref="taxon:11320" FT gene 15..852 FT /gene="NEP" FT /gene_synonym="NS2" FT CDS join(15..44,517..852) FT /codon_start=1 FT /gene="NEP" FT /gene_synonym="NS2" FT /product="nuclear export protein" FT /note="nonstructural protein 2" FT /protein_id="QIJ23722.1" FT /translation="MESNTMSSFQDILMRMSKMQLGSSSEDLSGMVTRFESLKIYRDSL FT GEAVMRMGDLHYLQSRNEKWREQLGQKFEEIRWLIEEIRHRLKATENSFEQITFMQALQ FT LLLEVEQEIRAFSFQLI" FT gene 15..674 FT /gene="NS1" FT CDS 15..674 FT /codon_start=1 FT /gene="NS1" FT /product="nonstructural protein 1" FT /protein_id="QIJ23721.1" FT /translation="MESNTMSSFQVDCFLWHIRKRFADNGLGDAPFLDRLRRDQKSLKG FT RGNTLGLDIKTATLVGKQIVEWILKEESSETLRMAIASVPTSRYISDMTLEEMSRDWFM FT LMPRQKIIGPLCVRLDQAVMDKNIVLEANFSVIFNRLETLILLRAFTEEGTIVGEISPL FT PSLPGHTYEDVKNAVGVLIGGLEWNGNTVRVSENIQRFAWRSCDENGRPSLPPEQK" XX SQ Sequence 865 BP; 280 A; 166 C; 205 G; 214 T; 0 other; gtgacaaaaa cataatggaa tccaacacca tgtcaagctt tcaggtagac tgttttcttt 60 ggcatattcg caagcgattt gcagacaatg gattgggtga tgccccattc ctcgatcggc 120 tacgccgaga tcaaaagtcc ttaaaaggaa gaggcaacac ccttggcctc gacatcaaaa 180 cagccactct tgttgggaaa caaattgtgg aatggatttt gaaagaggaa tccagcgaga 240 cacttagaat ggcaattgca tctgtaccta cttcgcgtta catttctgac atgaccctcg 300 aggaaatgtc acgagactgg ttcatgctta tgcctaggca aaagataata ggccctcttt 360 gcgtgcgatt ggaccaggcg gtcatggata agaacatagt actggaagca aacttcagtg 420 taatcttcaa ccgattagag accttgatac tactgagggc tttcactgag gagggaacaa 480 tagttggaga aatttcacca ttaccttctc ttccaggaca tacttatgag gatgtcaaaa 540 atgcagttgg ggtcctcatc ggaggacttg agtggaatgg taacacggtt cgagtctctg 600 aaaatataca gagattcgct tggagaagct gtgatgagaa tgggagacct tcactacctc 660 cagagcagaa atgagaagtg gcgggaacaa ttgggacaga aatttgagga aataagatgg 720 ttaattgaag aaatacgaca cagattgaaa gcgacagaga atagtttcga acaaataaca 780 tttatgcaag ccttacaact actgcttgaa gtagagcaag agataagagc tttctcgttt 840 cagcttattt aatgataaaa aacac 865 // ID MT167222; SV 1; linear; viral cRNA; STD; VRL; 2316 BP. XX AC MT167222; XX PR Project:PRJNA37813; XX DT 17-MAR-2020 (Rel. 144, Created) DT 17-MAR-2020 (Rel. 144, Last updated, Version 1) XX DE Influenza A virus (A/Arkansas/01/2020(H1N1)) segment 1 polymerase PB2 (PB2) DE gene, complete cds. XX KW . XX OS Influenza A virus OC Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Insthoviricetes; OC Articulavirales; Orthomyxoviridae; Alphainfluenzavirus. XX RN [1] RP 1-2316 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT "Influenza Sequencing Activity group"; RL Unpublished. XX RN [2] RP 1-2316 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT ; RL Submitted (09-MAR-2020) to the INSDC. RL WHO Collaborating Center for Surveillance, Epidemiology and Control of RL Influenza, Influenza Division, Centers for Disease Control and Prevention, RL 1600 Clifton Road, N.E., Atlanta, GA 30333, USA XX DR MD5; 778718a3833b91326204f858791fb64f. XX CC ##FluData-START## CC EPI_ISOLATE_ID :: EPI_ISL_409176 CC NAME :: A/Arkansas/01/2020 CC TYPE :: H1N1 CC Segment_name :: PB2 CC HOST_AGE :: 32 CC PASSAGE :: Original CC LOCATION :: United States / Arkansas CC COLLECT_DATE :: 04-Jan-2020 CC Lineage :: A(H1N1)pdm09 CC SPECIMEN_ID :: 1933800000-118 ORIGINAL CC SENDER_LAB :: Arkansas Department of Health CC SEQLAB_SAMPLE_ID :: 3026054562 CC EPI_SEQUENCE_ID :: EPI1684258 CC ##FluData-END## XX FH Key Location/Qualifiers FH FT source 1..2316 FT /organism="Influenza A virus" FT /segment="1" FT /host="Homo sapiens" FT /strain="A/Arkansas/01/2020" FT /serotype="H1N1" FT /mol_type="viral cRNA" FT /country="USA:Arkansas" FT /collection_date="04-Jan-2020" FT /db_xref="taxon:11320" FT gene 16..2295 FT /gene="PB2" FT CDS 16..2295 FT /codon_start=1 FT /gene="PB2" FT /product="polymerase PB2" FT /protein_id="QIJ23723.1" FT /translation="MERIKELRDLMSQSRTREIITKTTVDHMAIIKKYTSGRQEKNPAL FT RMKWMMAMKYPITADKRIMDIIPERNEQGQTLWSKINDAGSDRVMVSPLAVTWWNRNGP FT TTSTVHYPKVYKTYFEKVERLKHGTFGPVHFRNQVKIRRRVDTNPGHADLSAKEAQDVI FT MEVVFPNEVGARILTSESQLAITKEKKEELQNCKIAPLMVAYMLERELVRKTRFLPVAG FT GTSSVYIEVLHLTQGTCWEQMYTPGGKVRNDDVDQSLIIAARNIVRRAAVSADPLASLL FT EMCHSTQIGGVKMVDILKQNPTEEQAVDICKAAIGLRISSSFSFGGFTFKRTSGSSVKK FT EEEMLTGNLQTLKLRVHEGYEEFTMVGRRATAILRKATRRLIQLIVSGRDEQSIAEAII FT VAMVFSQEDCMIKAVRGDLNFVNRANQRLNPMHQLLRHFQKDAKVLFQNWGIETIDNVM FT GMIGILPDMTPSTEMSLRGIRVSKMGVDEYSSTERVVVSIDRFLRVRDQRGNVLLSPEE FT VSETQGTEKLTITYSSSMMWEINGPESVLVNTYQWIIRNWEIVKIQWSQDPTMLYNKME FT FEPFQSLVPKATRSRYSGFVRTLFQQMRDVLGTFDTVQIIKLLPFAAAPPEQSRMQFSS FT LTVNVRGSGLRILVRGNSPVFNYNKATKRLTILGKDAGALTEDPDEGTSGVESAVLRGF FT LILGKEDRRYGPALSINELSNLAKGEKANVLIGQGDIVLVMKRKRDSSILTDSQTATKR FT IRMAIN" XX SQ Sequence 2316 BP; 797 A; 434 C; 581 G; 504 T; 0 other; tcaaatatat tcaatatgga gagaataaaa gagctgagag atctaatgtc gcagtcccgc 60 actcgcgaga taatcactaa gaccactgtg gaccatatgg ccatcatcaa aaagtacaca 120 tcgggaaggc aagagaagaa ccccgcgctc aggatgaagt ggatgatggc aatgaaatac 180 ccaattacgg cagacaagag aataatggac ataatcccag agaggaatga acaaggacaa 240 accctctgga gcaaaataaa cgatgctgga tcagaccgag tgatggtatc acctctggca 300 gtaacatggt ggaataggaa tggtccaaca acaagtacag ttcattaccc taaggtatat 360 aaaacttatt tcgaaaaggt cgaaaggttg aaacatggta ccttcggccc tgtccacttc 420 agaaatcaag ttaaaataag gaggagagtt gatacaaacc ctggccatgc agatctcagt 480 gccaaggagg cacaggatgt gatcatggaa gttgttttcc caaatgaagt gggggcaaga 540 atactgacat cagagtcaca gctggcaata acaaaagaga agaaagaaga gctccagaat 600 tgtaaaattg ctcccttgat ggtggcgtac atgctagaaa gagaattggt ccgtaaaaca 660 aggtttctcc cagtagccgg tgggacaagc agtgtttata ttgaggtgtt gcacttgacc 720 caagggacgt gctgggagca gatgtacact ccaggaggaa aagtgagaaa tgatgatgtt 780 gaccaaagct tgattatcgc tgctagaaac atagtaagaa gagcagcagt gtcagcagac 840 ccattagcat ctctcttgga aatgtgccac agcacacaga ttggaggtgt gaagatggtg 900 gacatcctta aacagaatcc aactgaggag caagccgtag acatatgcaa ggcagcaata 960 gggttgagga tcagctcatc tttcagtttt ggtgggttca ctttcaaaag gacaagcgga 1020 tcatcagtca agaaagaaga agaaatgcta acgggcaacc tccaaacact gaaattaaga 1080 gtacatgaag ggtatgaaga attcacaatg gttgggagaa gagcaacagc tattctcaga 1140 aaggcaacca ggagattgat ccaattaata gtaagcggga gagacgagca gtcaatagct 1200 gaagcaataa ttgtggccat ggtattctca caagaggatt gcatgatcaa agcagttagg 1260 ggtgatctga actttgtcaa tagggcaaac cagagactga atcccatgca ccaactcttg 1320 aggcatttcc aaaaagatgc aaaagtgctt ttccagaact ggggaattga aaccatcgac 1380 aatgtgatgg gaatgatcgg aatactgccc gacatgaccc caagcacgga gatgtcactg 1440 agaggaataa gagtcagcaa gatgggagta gatgaatact ccagcacgga gagagtggta 1500 gtgagtattg accgattttt gagggtcaga gatcaaagag gaaacgtact attgtctccc 1560 gaagaagtca gtgaaacaca aggaactgag aagttgacaa taacttattc gtcatcaatg 1620 atgtgggaaa tcaacggccc tgagtcagtg ctagtcaaca cttatcaatg gataatcaga 1680 aactgggaaa ttgtgaaaat tcaatggtca caagacccca caatgttata caacaaaatg 1740 gaatttgaac catttcagtc tcttgttcct aaggcaacca gaagccggta cagtggattc 1800 gtaaggacac tgttccagca aatgagggat gtgcttggga catttgacac tgtccaaata 1860 ataaaacttc tcccctttgc tgctgctcca ccagaacaga gcaggatgca attttcttca 1920 ttaactgtga atgtgagagg atcagggtta aggatactgg taagaggcaa ttctccagta 1980 ttcaattaca acaaggcaac caaacgactt acgattcttg gaaaggatgc aggtgcattg 2040 actgaagatc cagatgaagg cacatctggg gtggagtctg ctgtcctgag aggattcctc 2100 attttaggca aagaagacag gagatatggc ccagcattaa gcatcaatga actgagcaat 2160 cttgcaaaag gagagaaagc taatgtgcta attgggcagg gagacatagt tttggtaatg 2220 aaacgaaaac gggactctag catacttact gatagccaga cagcgaccaa aagaattcgg 2280 atggccatca attagtgtcg aattgtttaa aaacga 2316 // ID MT167223; SV 1; linear; viral cRNA; STD; VRL; 2316 BP. XX AC MT167223; XX PR Project:PRJNA37813; XX DT 17-MAR-2020 (Rel. 144, Created) DT 17-MAR-2020 (Rel. 144, Last updated, Version 1) XX DE Influenza A virus (A/Arkansas/01/2020(H1N1)) segment 2 polymerase PB1 (PB1) DE gene, complete cds; and nonfunctional PB1-F2 protein (PB1-F2) gene, DE complete sequence. XX KW . XX OS Influenza A virus OC Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Insthoviricetes; OC Articulavirales; Orthomyxoviridae; Alphainfluenzavirus. XX RN [1] RP 1-2316 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT "Influenza Sequencing Activity group"; RL Unpublished. XX RN [2] RP 1-2316 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT ; RL Submitted (09-MAR-2020) to the INSDC. RL WHO Collaborating Center for Surveillance, Epidemiology and Control of RL Influenza, Influenza Division, Centers for Disease Control and Prevention, RL 1600 Clifton Road, N.E., Atlanta, GA 30333, USA XX DR MD5; 3c19070277d0b33dec2294272ac7a290. XX CC ##FluData-START## CC EPI_ISOLATE_ID :: EPI_ISL_409176 CC NAME :: A/Arkansas/01/2020 CC TYPE :: H1N1 CC Segment_name :: PB1 CC HOST_AGE :: 32 CC PASSAGE :: Original CC LOCATION :: United States / Arkansas CC COLLECT_DATE :: 04-Jan-2020 CC Lineage :: A(H1N1)pdm09 CC SPECIMEN_ID :: 1933800000-118 ORIGINAL CC SENDER_LAB :: Arkansas Department of Health CC SEQLAB_SAMPLE_ID :: 3026054562 CC EPI_SEQUENCE_ID :: EPI1684259 CC ##FluData-END## XX FH Key Location/Qualifiers FH FT source 1..2316 FT /organism="Influenza A virus" FT /segment="2" FT /host="Homo sapiens" FT /strain="A/Arkansas/01/2020" FT /serotype="H1N1" FT /mol_type="viral cRNA" FT /country="USA:Arkansas" FT /collection_date="04-Jan-2020" FT /db_xref="taxon:11320" FT gene 13..2286 FT /gene="PB1" FT CDS 13..2286 FT /codon_start=1 FT /gene="PB1" FT /product="polymerase PB1" FT /protein_id="QIJ23724.1" FT /translation="MDVNPTLLFLKIPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNR FT THQYSEKGKWTTNTETGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFE FT NSCLETMEVVQQTRVDKLTQGRQTYDWTLNRNQPAATALANTIEVFRSNDLTANESGRL FT IDFLKDVMESMNKEEIEITTHFQRKRRVRDNMTKKMVTQRTIGKKKQRLNKRGYLIRAL FT TLNTMTKDAERGKLKRRAIATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAK FT LANVVRKMMTNSQDTEISFTITGDNTKWNENQNPRMFLAMITYITRNQPEWFRNILSMA FT PIMFSNKMARLGKGYMFESKRMKIRTQIPAEMLASIDLKYFNESTKKKIEKIRPLLMDG FT TASLSPGMMMGMFNMLSTVLGVSILNLGQKKYTKTTYWWDGLQSSDDFALIVNAPNHEG FT IQAGVDRFYRTCKLVGINMSKKKSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSGV FT NESADMSIGVTVIKNNMINNDLGPATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFEL FT KKLWDQTQSKVGLLVSDGGPNLYNIRNLHIPEVCLKWELMDDDYRGRLCNPLNPFVSHK FT EIDSVNNAVVMPAHGPAKSMEYDAVATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCN FT LFEKFFPSSSYRRPVGISSMVEAMVSRARIDARVDFESGRIKKEEFSEIMKICSTIEEL FT RRQK" FT gene 107..379 FT /gene="PB1-F2" FT misc_feature 107..379 FT /gene="PB1-F2" FT /note="nonfunctional PB1-F2 protein due to mutation" XX SQ Sequence 2316 BP; 833 A; 436 C; 518 G; 529 T; 0 other; caaaccattt gaatggatgt caatccgact ttacttttcc taaaaattcc agcacaaaat 60 gccataagca ccacattccc ttatactgga gatcctccat acagccatgg aacaggaaca 120 ggatacacca tggacacagt aaacagaaca caccaatact cagaaaaggg gaagtggaca 180 acaaatacag agactggtgc accccagctc aacccgattg acggaccact acccgaggat 240 aatgaaccaa gtgggtatgc acaaacagac tgtgttctag aggctatggc tttccttgaa 300 gaatcccatc caggaatatt tgagaattca tgccttgaaa caatggaagt tgttcaacaa 360 acaagggtag ataaactgac tcaaggtcgc cagacttatg attggacatt aaacagaaat 420 caaccggcag caactgcatt ggccaacacc atagaagttt tcagatcaaa tgacctaaca 480 gctaacgagt caggaaggct aatagatttc ttaaaggatg tgatggaatc aatgaataaa 540 gaggaaatag agataacaac ccactttcaa agaaagagga gagtaagaga caacatgacc 600 aagaagatgg tcacgcaaag aacaataggg aagaaaaaac agagactgaa taagagaggc 660 tatctaataa gagcactgac attaaataca atgacaaaag atgcagagag aggcaagtta 720 aaaagaaggg ctatagcaac acctgggatg caaattagag gtttcgtata ctttgttgaa 780 actttagcta ggagcatttg cgaaaagctt gaacagtctg ggctcccagt agggggcaat 840 gaaaagaagg ccaaattggc aaatgttgtg agaaagatga tgactaattc acaagataca 900 gagatttctt tcacaatcac tggggacaac actaaatgga atgaaaatca aaatcctcga 960 atgttcctgg cgatgattac atatatcacc agaaatcaac ccgagtggtt tagaaacatc 1020 ctgagcatgg cacccataat gttctcaaat aaaatggcaa gactaggaaa agggtacatg 1080 ttcgagagta aaagaatgaa gattcgaaca caaataccag cagaaatgct agcaagcatt 1140 gatctaaagt atttcaatga atcaacaaag aagaaaattg agaagataag gcctctttta 1200 atggatggca cagcatcact gagtcctggg atgatgatgg gcatgttcaa catgctaagt 1260 acggtcttgg gagtatcgat actgaatctc ggacaaaaga aatacaccaa gacaacatac 1320 tggtgggatg ggctccaatc atccgacgat tttgctctca tagtgaatgc accaaaccat 1380 gaaggaatcc aagcaggagt ggacagattc tacaggacct gcaaattagt gggaatcaac 1440 atgagcaaaa agaagtccta tataaataag acagggacat ttgaattcac aagctttttt 1500 tatcgctatg gatttgtggc taattttagc atggagctac ccagcttcgg agtgtctgga 1560 gtaaatgaat cagctgacat gagtattgga gtaacagtga taaagaacaa catgataaac 1620 aatgaccttg gacctgcaac agctcagatg gctcttcaat tgttcatcaa agactacaga 1680 tacacatata ggtgtcatag gggagacaca caaattcaga cgagaagatc atttgagttg 1740 aagaagctat gggatcaaac ccaatcgaag gtagggctat tagtatcaga tggaggacca 1800 aacttataca acatacggaa tcttcacatt cctgaagtct gcttaaaatg ggagctaatg 1860 gatgatgatt atcgggggag actttgtaat cccctgaatc cctttgtgag tcataaggag 1920 attgattctg taaacaatgc tgtggtaatg ccagcccatg gcccagctaa aagcatggaa 1980 tatgatgccg ttgctactac acattcctgg attcccaaga ggaatcgttc tatcctcaac 2040 acaagccaaa ggggaatcct tgaggatgaa cagatgtacc agaagtgttg caatttattc 2100 gagaaatttt tccctagcag ttcatataga agaccggttg gaatttctag catggtggag 2160 gccatggtgt ctagggcccg gattgatgcc agagtcgact ttgagtctgg acggatcaag 2220 aaagaagagt tctctgagat catgaagatc tgttccacca ttgaagaact cagacggcaa 2280 aaataatgaa tttaacttgt ccttcatgaa aaaatg 2316 // ID MT167224; SV 1; linear; viral cRNA; STD; VRL; 2208 BP. XX AC MT167224; XX PR Project:PRJNA37813; XX DT 17-MAR-2020 (Rel. 144, Created) DT 17-MAR-2020 (Rel. 144, Last updated, Version 1) XX DE Influenza A virus (A/Arkansas/01/2020(H1N1)) segment 3 polymerase PA (PA) DE and PA-X protein (PA-X) genes, complete cds. XX KW . XX OS Influenza A virus OC Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Insthoviricetes; OC Articulavirales; Orthomyxoviridae; Alphainfluenzavirus. XX RN [1] RP 1-2208 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT "Influenza Sequencing Activity group"; RL Unpublished. XX RN [2] RP 1-2208 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT ; RL Submitted (09-MAR-2020) to the INSDC. RL WHO Collaborating Center for Surveillance, Epidemiology and Control of RL Influenza, Influenza Division, Centers for Disease Control and Prevention, RL 1600 Clifton Road, N.E., Atlanta, GA 30333, USA XX DR MD5; 942805b58921d2075b22ce38a7d29655. XX CC ##FluData-START## CC EPI_ISOLATE_ID :: EPI_ISL_409176 CC NAME :: A/Arkansas/01/2020 CC TYPE :: H1N1 CC Segment_name :: PA CC HOST_AGE :: 32 CC PASSAGE :: Original CC LOCATION :: United States / Arkansas CC COLLECT_DATE :: 04-Jan-2020 CC Lineage :: A(H1N1)pdm09 CC SPECIMEN_ID :: 1933800000-118 ORIGINAL CC SENDER_LAB :: Arkansas Department of Health CC SEQLAB_SAMPLE_ID :: 3026054562 CC EPI_SEQUENCE_ID :: EPI1684257 CC ##FluData-END## XX FH Key Location/Qualifiers FH FT source 1..2208 FT /organism="Influenza A virus" FT /segment="3" FT /host="Homo sapiens" FT /strain="A/Arkansas/01/2020" FT /serotype="H1N1" FT /mol_type="viral cRNA" FT /country="USA:Arkansas" FT /collection_date="04-Jan-2020" FT /db_xref="taxon:11320" FT gene 13..2163 FT /gene="PA" FT CDS 13..2163 FT /codon_start=1 FT /gene="PA" FT /product="polymerase PA" FT /protein_id="QIJ23725.1" FT /translation="MEDFVRQCFNPMIVELAEKAMKEYGEDPKIETNKFAAICTHLEVC FT FMYSDFHFIDERGESIIVESGDPNALLKHRFEIIEGRDRIMAWTVVNSICNTTGIEKPK FT FLPDLYDYKENRFIEIGVTRREVHIYYLEKANKIKSEKTHIHIFSFTGEEMATKADYTL FT DEESRARIKTRLFTIRQEMASRSLWDSFRQSERGEETIEEKFEITGTMRKLADQSLPPN FT FSSLENFRAYVDGFEPNGCIEGKLSQMSKEVNAKIEPFLRTTPRPLRLPDGPLCHQRSK FT FLLMDALKLSIEDPSHEGEGIPLYDAIKCMKTFFGWKEPKIVKPHEKGVNPNYLMAWKQ FT VLAELQDIENEEKIPRTKNMKKTSQLKWALGENMAPEKVDFDDCKDVGDLKQYDSDEPE FT PRSLASWVQNEFNKACELTDSSWIELDEIGEDVAPIEHIASMRRNYFTAEVSHCRATEY FT IMKGVYINTALLNASCAAMDDFQLIPMISKCRTKEGRRKTNLYGFIIKGRSHLRNDTDV FT VNFVSMEFSLTDPRLEPHKWEKYCVLEIGDMLLRTAIGQVSRPMFLYVRTNGTSKIKMK FT WGMEMRRCLLQSLQQIESMIEAESSVKEKDMTKEFFENKSETWPIGESPRGVEEGSIGK FT VCRTLLAKSVFNSLYASPQLEGFSAESRKLLLIVQALRDNLEPGTFDLGGLYEAIEECL FT INDPWVLLNASWFNSFLTHALK" FT gene 13..712 FT /gene="PA-X" FT CDS join(13..582,584..712) FT /codon_start=1 FT /ribosomal_slippage FT /gene="PA-X" FT /product="PA-X protein" FT /protein_id="QIJ23726.1" FT /translation="MEDFVRQCFNPMIVELAEKAMKEYGEDPKIETNKFAAICTHLEVC FT FMYSDFHFIDERGESIIVESGDPNALLKHRFEIIEGRDRIMAWTVVNSICNTTGIEKPK FT FLPDLYDYKENRFIEIGVTRREVHIYYLEKANKIKSEKTHIHIFSFTGEEMATKADYTL FT DEESRARIKTRLFTIRQEMASRSLWDSFVSPKEAKKQLKKSLKLQELCASLPTKVSHQT FT SPALKTSEPM" XX SQ Sequence 2208 BP; 747 A; 423 C; 514 G; 524 T; 0 other; tactgatcca aaatggaaga ctttgtgcga caatgcttca atccaatgat cgtcgagctt 60 gcggaaaagg caatgaaaga atatggggaa gaccccaaaa ttgaaactaa taagtttgct 120 gcaatttgca cacatttgga agtttgtttc atgtattcgg atttccattt cattgatgaa 180 cggggtgaat caataattgt agaatctggt gacccaaatg cactattgaa gcaccgattt 240 gagataattg aaggaagaga ccgaatcatg gcctggacag tggtgaacag tatatgtaac 300 acaacaggga tagagaagcc taaatttctt cctgatttgt atgattacaa agagaaccgg 360 ttcattgaaa ttggagtaac acggagagaa gtccacatat attacctaga gaaagccaac 420 aaaataaaat ctgagaagac acacattcac atcttttcat tcactggaga agagatggcc 480 accaaagcag actacaccct tgacgaagaa agcagagcaa gaatcaaaac taggcttttc 540 actataagac aagaaatggc cagtaggagt ctatgggatt cctttcgtca gtccgaaaga 600 ggcgaagaaa caattgaaga aaagtttgaa attacaggaa ctatgcgcaa gcttgccgac 660 caaagtctcc caccaaactt ctccagcctt gaaaacttca gagcctatgt agatggattc 720 gagccgaacg gctgcattga gggcaagctt tcccaaatgt caaaagaagt gaacgccaaa 780 attgaaccat tcttgaggac gacaccacgc cccctcagat tacctgatgg acctctttgc 840 catcagcggt caaagttcct gctgatggat gctctgaaat taagcattga agacccgagt 900 cacgaggggg aaggaatacc actatatgat gcaatcaaat gcatgaagac attctttggc 960 tggaaagagc ctaaaatagt caaaccacat gagaaaggcg taaatcccaa ttacctcatg 1020 gcttggaagc aggtgctagc agagctacag gacattgaaa atgaagagaa aatcccaagg 1080 acaaagaaca tgaagaaaac aagccaattg aagtgggcac tcggtgaaaa tatggcgcct 1140 gaaaaagtgg actttgatga ctgtaaagat gttggagacc ttaaacagta tgacagtgat 1200 gagccagagc ccagatctct agcaagctgg gtccaaaacg aattcaataa ggcatgtgaa 1260 ttgactgatt caagctggat agaacttgat gaaataggag aagatgttgc cccgattgaa 1320 catatagcaa gcatgaggag gaactatttt acagcagaag tgtcccactg cagggctact 1380 gaatacataa tgaagggagt gtacataaat acggcattgc ttaatgcatc ctgtgcagcc 1440 atggatgact ttcagctgat tccaatgata agcaaatgta ggaccaaaga aggaagacgg 1500 aaaacaaacc tgtatgggtt cattataaaa ggaaggtctc atttgagaaa tgatactgat 1560 gtagtgaact ttgtaagtat ggagttctca ctcactgatc caagactgga accacacaaa 1620 tgggaaaaat actgtgttct tgaaatagga gacatgctat tgagaactgc gataggtcaa 1680 gtgtcgaggc ccatgttcct atatgtgaga accaatggaa cctccaagat caagatgaaa 1740 tggggcatgg aaatgaggcg ctgccttctt caatctcttc aacagattga gagcatgatt 1800 gaagccgagt cttctgtcaa agagaaagac atgaccaagg aattctttga aaacaaatcg 1860 gaaacatggc caatcggaga gtcacccagg ggagtggagg aaggctctat tggaaaagtg 1920 tgcagaacct tactggcaaa atctgtgttc aacagtctat atgcttctcc acaacttgag 1980 gggttttcgg ctgaatcaag aaaattgctt ctcattgttc aggcacttag ggacaacctg 2040 gaacctggaa cctttgatct tggggggcta tatgaagcaa tcgaggagtg cttgattaat 2100 gatccctggg ttttgcttaa tgcatcttgg ttcaactcct tcctcacaca tgcactgaaa 2160 tagttgtggc aatgctacta tttgctatcc atattgtcca aaaaagta 2208 // ID MT167225; SV 1; linear; viral cRNA; STD; VRL; 1752 BP. XX AC MT167225; XX PR Project:PRJNA37813; XX DT 17-MAR-2020 (Rel. 144, Created) DT 17-MAR-2020 (Rel. 144, Last updated, Version 1) XX DE Influenza A virus (A/Arkansas/01/2020(H1N1)) segment 4 hemagglutinin (HA) DE gene, complete cds. XX KW . XX OS Influenza A virus OC Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Insthoviricetes; OC Articulavirales; Orthomyxoviridae; Alphainfluenzavirus. XX RN [1] RP 1-1752 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT "Influenza Sequencing Activity group"; RL Unpublished. XX RN [2] RP 1-1752 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT ; RL Submitted (09-MAR-2020) to the INSDC. RL WHO Collaborating Center for Surveillance, Epidemiology and Control of RL Influenza, Influenza Division, Centers for Disease Control and Prevention, RL 1600 Clifton Road, N.E., Atlanta, GA 30333, USA XX DR MD5; 3a53612384ff5532e33eaf5ca5e5bbd6. XX CC ##FluData-START## CC EPI_ISOLATE_ID :: EPI_ISL_409176 CC NAME :: A/Arkansas/01/2020 CC TYPE :: H1N1 CC Segment_name :: HA CC HOST_AGE :: 32 CC PASSAGE :: Original CC LOCATION :: United States / Arkansas CC COLLECT_DATE :: 04-Jan-2020 CC Lineage :: A(H1N1)pdm09 CC SPECIMEN_ID :: 1933800000-118 ORIGINAL CC SENDER_LAB :: Arkansas Department of Health CC SEQLAB_SAMPLE_ID :: 3026054562 CC EPI_SEQUENCE_ID :: EPI1684261 CC ##FluData-END## XX FH Key Location/Qualifiers FH FT source 1..1752 FT /organism="Influenza A virus" FT /segment="4" FT /host="Homo sapiens" FT /strain="A/Arkansas/01/2020" FT /serotype="H1N1" FT /mol_type="viral cRNA" FT /country="USA:Arkansas" FT /collection_date="04-Jan-2020" FT /db_xref="taxon:11320" FT gene 21..1721 FT /gene="HA" FT CDS 21..1721 FT /codon_start=1 FT /gene="HA" FT /product="hemagglutinin" FT /function="receptor binding and fusion protein" FT /protein_id="QIJ23727.1" FT /translation="MKAILVVLLYTFTTANADTLCIGYHANNSTDTVDTVLEKNVTVTH FT SVNLLEDKHNGKLCKLRGVAPLHLGKCNIAGWILGNPECESLSTARSWSYIVETSNSDN FT GTCYPGDFINYEELREQLSSVSSFERFEIFPKTSSWPNHDSNNGVTAACPQAGAKSFYK FT NLIWLVKKGNSYPMLNQTYINDKGKEVLVLWGIHHPPTTADQQSLYQNADAYVFVGTSR FT YSKKFKPEIAKRPKVRDQEGRMNYYWTLVDPGDKITFEATGNLVVPRYAFTMERDAGSG FT IIISDTPVHDCNTTCQTPEGAINTSLPFHNVNPITIGKCPKYVKSTKLRLATGLRNVPS FT IQSRGLFGAIAGFIEGGWTGMVDGWYGYHHQNEQGSGYAADLKSTQNAIDKITNKVNSV FT IEKMNTQFTAVGKEFNHLEKRIENLNKKVDDGFLDVWTYNAELLVLLENERTLDYHDSN FT VKNLYEKVRNQLKNNAKEIGNGCFEFYHKCDNTCMESVKNGTYDYPKYSEEAKLNREKI FT DGVKLESTRIYQILAIYSTAASSLVLVVSLGAISFWMCSNGSLQCRICI" FT sig_peptide 21..71 FT /gene="HA" FT mat_peptide 72..1052 FT /gene="HA" FT /product="HA1" FT mat_peptide 1053..1718 FT /gene="HA" FT /product="HA2" XX SQ Sequence 1752 BP; 634 A; 331 C; 379 G; 408 T; 0 other; ggaaaacaaa agcaacaaaa atgaaggcaa tactagtagt tctgctgtat acattcacaa 60 ccgcaaatgc agacacatta tgtataggtt atcatgcgaa caattcaaca gacactgtag 120 acacagtact agaaaagaat gtaacagtaa cacactctgt taatcttctg gaagacaagc 180 ataacggaaa actatgcaaa ctaagagggg tagccccatt gcacttgggt aaatgtaaca 240 ttgctggctg gatcctggga aatccagaat gtgaatcact ctccacagca agatcatggt 300 cctacattgt ggaaacatct aattcagaca atggaacgtg ttacccagga gatttcatca 360 attatgagga gctaagagag cagttgagct cagtgtcatc atttgaaagg tttgaaatat 420 tccccaagac aagttcatgg cctaatcatg actcgaacaa tggtgtaacg gcagcatgtc 480 ctcaagctgg agcaaaaagc ttctacaaaa acttgatatg gctggttaaa aaaggaaatt 540 catacccaat gctcaaccaa acctacatta atgataaagg gaaagaagtc ctcgtgctgt 600 ggggcattca ccatccacct actactgctg accaacaaag cctctatcag aatgcagatg 660 catatgtttt tgtggggaca tcaagataca gcaagaagtt caagccggaa atagcaaaaa 720 gacccaaagt gagggatcaa gaagggagaa tgaactatta ctggacacta gtagacccgg 780 gagacaaaat aacattcgaa gcaactggaa atctagtggt accgagatat gcattcacaa 840 tggaaagaga tgctggatct ggtattatca tttcagatac accagtccac gattgcaata 900 caacttgtca gacacctgag ggtgctataa acaccagcct cccatttcat aatgtaaatc 960 cgatcacaat tgggaaatgt ccaaagtatg taaaaagcac aaaattgaga ctggccacag 1020 gattgaggaa tgtcccgtct attcaatcta gaggcctatt cggggccatt gccggcttca 1080 ttgaaggggg atggacagga atggtagatg gatggtacgg ttatcaccat caaaatgagc 1140 agggatcagg atatgcagcc gatctgaaga gcacacaaaa tgccattgat aagattacta 1200 acaaagtaaa ttctgttatt gaaaagatga atacacagtt cacagcagtg ggtaaagagt 1260 tcaaccacct tgaaaaaaga atagagaatc taaataaaaa agttgatgat ggtttcctgg 1320 acgtttggac ttacaatgcc gaactgttgg ttctactgga aaacgaaaga actttggact 1380 atcacgattc aaatgtgaag aacttgtatg aaaaagtaag aaaccaatta aaaaacaatg 1440 ccaaggaaat tggaaacggc tgctttgaat tttaccacaa atgcgacaac acatgcatgg 1500 aaagtgtcaa gaatgggact tatgactacc caaaatactc agaggaagca aaattaaaca 1560 gagaaaaaat agatggagta aagctggaat caacaaggat ctaccagatt ttggcgatct 1620 attcaactgc cgccagttca ttggtactgg tagtctccct gggggcaatc agcttctgga 1680 tgtgctctaa tgggtctcta cagtgtagaa tatgtattta acattaggat ttcagaatca 1740 tgagaaaaac ac 1752 // ID MT167226; SV 1; linear; viral cRNA; STD; VRL; 1540 BP. XX AC MT167226; XX PR Project:PRJNA37813; XX DT 17-MAR-2020 (Rel. 144, Created) DT 17-MAR-2020 (Rel. 144, Last updated, Version 1) XX DE Influenza A virus (A/Arkansas/01/2020(H1N1)) segment 5 nucleocapsid protein DE (NP) gene, complete cds. XX KW . XX OS Influenza A virus OC Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Insthoviricetes; OC Articulavirales; Orthomyxoviridae; Alphainfluenzavirus. XX RN [1] RP 1-1540 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT "Influenza Sequencing Activity group"; RL Unpublished. XX RN [2] RP 1-1540 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT ; RL Submitted (09-MAR-2020) to the INSDC. RL WHO Collaborating Center for Surveillance, Epidemiology and Control of RL Influenza, Influenza Division, Centers for Disease Control and Prevention, RL 1600 Clifton Road, N.E., Atlanta, GA 30333, USA XX DR MD5; 916d64ef8749b26862421d7e4164ccef. XX CC ##FluData-START## CC EPI_ISOLATE_ID :: EPI_ISL_409176 CC NAME :: A/Arkansas/01/2020 CC TYPE :: H1N1 CC Segment_name :: NP CC HOST_AGE :: 32 CC PASSAGE :: Original CC LOCATION :: United States / Arkansas CC COLLECT_DATE :: 04-Jan-2020 CC Lineage :: A(H1N1)pdm09 CC SPECIMEN_ID :: 1933800000-118 ORIGINAL CC SENDER_LAB :: Arkansas Department of Health CC SEQLAB_SAMPLE_ID :: 3026054562 CC EPI_SEQUENCE_ID :: EPI1684254 CC ##FluData-END## XX FH Key Location/Qualifiers FH FT source 1..1540 FT /organism="Influenza A virus" FT /segment="5" FT /host="Homo sapiens" FT /strain="A/Arkansas/01/2020" FT /serotype="H1N1" FT /mol_type="viral cRNA" FT /country="USA:Arkansas" FT /collection_date="04-Jan-2020" FT /db_xref="taxon:11320" FT gene 34..1530 FT /gene="NP" FT CDS 34..1530 FT /codon_start=1 FT /gene="NP" FT /product="nucleocapsid protein" FT /protein_id="QIJ23728.1" FT /translation="MASQGTKRSYEQMETGGERQDTTEIRASVGRMIGGIGRFYIQMCT FT ELKLSDYDGRLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRIDGKW FT TRELILYDKEEIRRVWRQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRM FT CSLMQGSTLPRRSGAAGAAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTRVAYERM FT CNILKGKFQTAAQRAMMDQVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVY FT GLAVASGHDFEREGYSLVGIDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFED FT LRVSSFIRGKKVIPRGKLSTRGVQIASNENVETMDSNTLELRSRYWAIRTRSGGNTNQQ FT KASAGQISVQPTFSVQRNLPFERATIMAAFSGNNEGRTSDMRTEVIRMMESAKPEDLSF FT QGRGVFELSDEKATNPIVPSFDMSNEGSYFFGDNAEEYDN" XX SQ Sequence 1540 BP; 525 A; 299 C; 392 G; 324 T; 0 other; gtagataatc actcaatgag tgacatcgaa gccatggcgt ctcaaggcac caaacgatca 60 tatgaacaaa tggagactgg tggggagcgc caggatacca cagaaatcag agcatctgtt 120 ggaagaatga ttggtggaat cgggagattc tacatccaaa tgtgcactga actaaaactc 180 agtgattatg atggacgact aatccagaac agcataacaa tagagaggat ggtgctttct 240 gcttttgatg agagaagaaa taaataccta gaagagcatc caagtgctgg gaaggaccct 300 aagaaaacag gaggacccat ctatagaaga atagacggaa aatggacaag agaactcatc 360 ctttatgaca aagaagaaat aaggagagtt tggcgccaag caaacaatgg cgaagatgca 420 acagcaggtc ttactcatat catgatttgg cattccaatc tgaatgatgc cacatatcag 480 aggacaagag cacttgttcg cactggaatg gatcccagaa tgtgctccct aatgcaaggt 540 tcaacacttc ccaggaggtc tggtgccgca ggtgctgcag taaaaggagt tggaacaata 600 gctatggagt taatcagaat gataaaacgt ggaatcaatg accgaaattt ctggaggggt 660 gaaaatggac gaaggacaag agttgcttat gaaagaatgt gcaatatcct caaaggaaaa 720 tttcaaacag ctgcccagag ggcaatgatg gatcaagtaa gagaaagtcg aaacccagga 780 aacgctgaga ttgaagacct cattttcctg gcacgctcag cactcattct gagaggatca 840 gttgcacata aatcctgcct gcctgcttgt gtgtatgggc ttgcagtagc aagtggccat 900 gactttgaaa gggaaggata ctcactggtc gggatagacc cattcaaatt actccaaaac 960 agtcaagtgg tcagcctgat gagaccaaat gaaaatccag ctcacaagag tcaattggta 1020 tggatggcat gccactctgc tgcatttgaa gatttaagag tatcaagttt cataagagga 1080 aagaaagtga tcccaagagg aaagctttcc acaagagggg ttcagattgc ttcaaatgag 1140 aatgtggaaa ccatggactc caataccctg gaactaagaa gcagatactg ggccataaga 1200 accaggagtg gaggaaatac caatcaacag aaggcatctg caggccagat cagtgtgcag 1260 cctacattct cagtgcagcg aaatctccct tttgaaagag caaccattat ggcagcattc 1320 agcgggaaca atgaaggacg gacatccgac atgcgaacag aagttataag aatgatggaa 1380 agtgcaaagc cagaggattt gtccttccag gggcggggag tcttcgagct ctcggacgaa 1440 aaggcaacga acccgatcgt gccttccttt gacatgagta atgaagggtc ttatttcttc 1500 ggagacaatg cagaggagta tgacaattga agaaaaatac 1540 // ID MT167227; SV 1; linear; viral cRNA; STD; VRL; 1433 BP. XX AC MT167227; XX PR Project:PRJNA37813; XX DT 17-MAR-2020 (Rel. 144, Created) DT 17-MAR-2020 (Rel. 144, Last updated, Version 1) XX DE Influenza A virus (A/Arkansas/01/2020(H1N1)) segment 6 neuraminidase (NA) DE gene, complete cds. XX KW . XX OS Influenza A virus OC Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Insthoviricetes; OC Articulavirales; Orthomyxoviridae; Alphainfluenzavirus. XX RN [1] RP 1-1433 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT "Influenza Sequencing Activity group"; RL Unpublished. XX RN [2] RP 1-1433 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT ; RL Submitted (09-MAR-2020) to the INSDC. RL WHO Collaborating Center for Surveillance, Epidemiology and Control of RL Influenza, Influenza Division, Centers for Disease Control and Prevention, RL 1600 Clifton Road, N.E., Atlanta, GA 30333, USA XX DR MD5; 098ee37e182bf086859418c56c648718. XX CC ##FluData-START## CC EPI_ISOLATE_ID :: EPI_ISL_409176 CC NAME :: A/Arkansas/01/2020 CC TYPE :: H1N1 CC Segment_name :: NA CC HOST_AGE :: 32 CC PASSAGE :: Original CC LOCATION :: United States / Arkansas CC COLLECT_DATE :: 04-Jan-2020 CC Lineage :: A(H1N1)pdm09 CC SPECIMEN_ID :: 1933800000-118 ORIGINAL CC SENDER_LAB :: Arkansas Department of Health CC SEQLAB_SAMPLE_ID :: 3026054562 CC EPI_SEQUENCE_ID :: EPI1684260 CC ##FluData-END## XX FH Key Location/Qualifiers FH FT source 1..1433 FT /organism="Influenza A virus" FT /segment="6" FT /host="Homo sapiens" FT /strain="A/Arkansas/01/2020" FT /serotype="H1N1" FT /mol_type="viral cRNA" FT /country="USA:Arkansas" FT /collection_date="04-Jan-2020" FT /db_xref="taxon:11320" FT gene 9..1418 FT /gene="NA" FT CDS 9..1418 FT /codon_start=1 FT /gene="NA" FT /product="neuraminidase" FT /protein_id="QIJ23729.1" FT /translation="MNPNQKIITIGSICMTIGMANLILQIGNIISIWVSHSIQIGNQSQ FT IETCNKSVITYENNTWVNQTYVNISNTNSAARQSVAPVKLAGNSSLCPVSGWAIYSKDN FT SVRIGSKGDVFVIREPFISCSPLECRTFFLTQGALLNDKHSNGTIKDRSPYRTLMSCPI FT GEVPSPYNSRFESVAWSASACHDGTNWLTIGISGPDSGAVAVLKYNGIITDTIKSWRNN FT ILRTQESECACVNGSCFTIMTDGPSDGQASYKIFRIEKGKIIKSVEMKAPNYHYEECSC FT YPDSSEITCVCRDNWHGSNRPWVSFNQNLEYQMGYICSGVFGDNPRPNDKTGSCGPVSS FT NGANGVKGFSFKYGNGVWIGRTKSISSRKGFEMIWDPNGWTGTDNKFSKKQDIVGINEW FT SGYSGSFVQHPELTGLNCIRPCFWVELIRGRPEENTIWTSGSSISFCGVDSDIVGWSWP FT DGAELPFTVDK" XX SQ Sequence 1433 BP; 462 A; 264 C; 334 G; 373 T; 0 other; agtttaaaat gaatccaaac caaaagataa taaccattgg ttctatctgt atgacaattg 60 gaatggctaa cttaatatta caaattggaa acataatctc aatatgggtt agccactcaa 120 ttcaaattgg aaatcaaagc cagattgaaa catgcaataa aagcgtcatt acttatgaaa 180 acaacacttg ggtaaatcag acatatgtta acatcagcaa caccaactct gctgctagac 240 agtcagtggc tcccgtgaaa ttagcgggca attcctctct ctgccctgtt agtggatggg 300 ctatatacag taaagacaac agtgtaagaa tcggttccaa gggggatgtg tttgtcataa 360 gggaaccatt catatcatgc tctcccttgg aatgcagaac cttcttcttg actcaagggg 420 ctttgctaaa tgacaaacat tccaatggaa ccattaaaga cagaagccca tatcgaaccc 480 taatgagctg tcctattggt gaagttccct ctccatacaa ctcaagattt gagtcagtcg 540 cttggtcagc aagtgcttgt catgatggca ccaattggct aacaattgga atttccggcc 600 cagacagtgg ggcagtggct gtgttaaaat acaatggcat aataacagac actatcaaga 660 gttggaggaa caatatattg agaacacaag agtctgaatg tgcatgtgta aatggttctt 720 gctttaccat aatgaccgat ggaccaagtg atggacaggc ctcatacaaa atcttcagaa 780 tagaaaaggg aaagataatc aaatcagtcg aaatgaaagc ccctaattat cactatgagg 840 aatgctcctg ttaccctgat tctagtgaaa tcacctgtgt gtgcagggat aactggcatg 900 gctcgaatcg accgtgggtg tctttcaacc agaatctgga atatcagatg ggatacatat 960 gcagtggggt tttcggagac aatccacgcc ctaatgataa gacaggcagt tgtggtccag 1020 tatcgtctaa tggagcaaat ggggtaaaag gattttcatt caaatacggc aatggtgttt 1080 ggatagggag aactaagagc attagttcaa gaaaaggttt tgagatgatt tgggatccga 1140 atggatggac tgggactgac aataaattct caaaaaagca agatatcgta ggaataaatg 1200 agtggtcagg gtatagcggg agttttgttc agcatccaga actaacaggg ctgaattgta 1260 taagaccttg cttctgggtt gaactaataa gaggacgacc cgaagagaac acaatctgga 1320 ctagcgggag cagcatatcc ttttgtggtg tagacagtga cattgtgggt tggtcttggc 1380 cagacggtgc tgagttgcca tttaccgttg acaagtaatt tgttcaaaaa act 1433 // ID MT167228; SV 1; linear; viral cRNA; STD; VRL; 1002 BP. XX AC MT167228; XX PR Project:PRJNA37813; XX DT 17-MAR-2020 (Rel. 144, Created) DT 17-MAR-2020 (Rel. 144, Last updated, Version 1) XX DE Influenza A virus (A/Arkansas/01/2020(H1N1)) segment 7 matrix protein 2 DE (M2) and matrix protein 1 (M1) genes, complete cds. XX KW . XX OS Influenza A virus OC Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Insthoviricetes; OC Articulavirales; Orthomyxoviridae; Alphainfluenzavirus. XX RN [1] RP 1-1002 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT "Influenza Sequencing Activity group"; RL Unpublished. XX RN [2] RP 1-1002 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT ; RL Submitted (09-MAR-2020) to the INSDC. RL WHO Collaborating Center for Surveillance, Epidemiology and Control of RL Influenza, Influenza Division, Centers for Disease Control and Prevention, RL 1600 Clifton Road, N.E., Atlanta, GA 30333, USA XX DR MD5; ad378ba89b338f5fa86fa58a1f3b61c8. XX CC ##FluData-START## CC EPI_ISOLATE_ID :: EPI_ISL_409176 CC NAME :: A/Arkansas/01/2020 CC TYPE :: H1N1 CC Segment_name :: M CC HOST_AGE :: 32 CC PASSAGE :: Original CC LOCATION :: United States / Arkansas CC COLLECT_DATE :: 04-Jan-2020 CC Lineage :: A(H1N1)pdm09 CC SPECIMEN_ID :: 1933800000-118 ORIGINAL CC SENDER_LAB :: Arkansas Department of Health CC SEQLAB_SAMPLE_ID :: 3026054562 CC EPI_SEQUENCE_ID :: EPI1684256 CC ##FluData-END## XX FH Key Location/Qualifiers FH FT source 1..1002 FT /organism="Influenza A virus" FT /segment="7" FT /host="Homo sapiens" FT /strain="A/Arkansas/01/2020" FT /serotype="H1N1" FT /mol_type="viral cRNA" FT /country="USA:Arkansas" FT /collection_date="04-Jan-2020" FT /db_xref="taxon:11320" FT gene 14..995 FT /gene="M2" FT CDS join(14..39,728..995) FT /codon_start=1 FT /gene="M2" FT /product="matrix protein 2" FT /protein_id="QIJ23731.1" FT /translation="MSLLTEVETPTRSEWECRCSGSNDPLVIAANIIGILHLILWITDR FT LFFKCIYRRFKYGLKRGPSTEGVPESMREEYQQEQQSAVDVDDGHFVNIELE" FT gene 14..772 FT /gene="M1" FT CDS 14..772 FT /codon_start=1 FT /gene="M1" FT /product="matrix protein 1" FT /protein_id="QIJ23730.1" FT /translation="MSLLTEVETYVLSIIPSGPLKAEIAQRLESVFAGKNTDLEALMEW FT LKTRPILSPLTKGILGFVFTLTVPSERGLQRRRFIQNALNGNGDPNNMDRAVKLYKKLK FT REITFHGAKEVSLSYSTGALASCMGLIYNRMGTVTTEAAFGLVCATCEQIADSQHRSHR FT QMATTTNPLIRHENRMVLASTTAKAMEQVAGSSEQAAEAMEVANKTRQMVHAMRTIGTH FT PSSSAGLRDDLLENLQAYQKRMGVQMQRFK" XX SQ Sequence 1002 BP; 301 A; 208 C; 253 G; 240 T; 0 other; tagatgttta aagatgagtc ttctaaccga ggtcgaaacg tacgttcttt ctatcatccc 60 gtcaggcccc ctcaaagccg agatcgcaca gagactggaa agtgtctttg caggaaagaa 120 cacagatctt gaggctctca tggaatggct aaagacaaga ccaatcttgt cacctctgac 180 taagggaatt ttaggatttg tgttcacgct caccgtgccc agtgagcgag gactgcagcg 240 taggcgcttt atccaaaatg ccctaaatgg aaatggggac ccaaacaaca tggatagagc 300 agttaaacta tacaagaaac tcaaaagaga aataacgttc catggggcca aggaggtgtc 360 actaagctat tcaactggtg cacttgcaag ttgcatgggc ctcatataca acaggatggg 420 aacagtgacc acagaagctg ctttcggtct agtttgtgcc acttgtgaac agattgctga 480 ttcacagcat cggtctcaca gacaaatggc tactaccaca aatccactaa tcaggcatga 540 aaacagaatg gtgttggcta gcactacggc aaaggctatg gaacaggtgg ctggatcgag 600 tgaacaggca gcggaggcca tggaggttgc taataagact aggcagatgg tacatgcaat 660 gagaactatt ggaactcatc ctagctccag tgctggtcta agagatgacc ttcttgaaaa 720 tttgcaggcc taccagaagc gaatgggagt gcagatgcag cggttcaaat gatcctctcg 780 tcattgcagc aaacatcatt gggatcttgc acctgatatt gtggattact gatcgtcttt 840 ttttcaaatg catttatcgt cgctttaaat acggtttgaa aagagggcct tctacggaag 900 gagtgcctga gtccatgagg gaagaatatc aacaggagca gcagagtgct gtggatgttg 960 acgatggtca ttttgtcaac atagagctag agtaaaaaac ta 1002 // ID MT167229; SV 1; linear; viral cRNA; STD; VRL; 865 BP. XX AC MT167229; XX PR Project:PRJNA37813; XX DT 17-MAR-2020 (Rel. 144, Created) DT 17-MAR-2020 (Rel. 144, Last updated, Version 1) XX DE Influenza A virus (A/Arkansas/01/2020(H1N1)) segment 8 nuclear export DE protein (NEP) and nonstructural protein 1 (NS1) genes, complete cds. XX KW . XX OS Influenza A virus OC Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Insthoviricetes; OC Articulavirales; Orthomyxoviridae; Alphainfluenzavirus. XX RN [1] RP 1-865 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT "Influenza Sequencing Activity group"; RL Unpublished. XX RN [2] RP 1-865 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT ; RL Submitted (09-MAR-2020) to the INSDC. RL WHO Collaborating Center for Surveillance, Epidemiology and Control of RL Influenza, Influenza Division, Centers for Disease Control and Prevention, RL 1600 Clifton Road, N.E., Atlanta, GA 30333, USA XX DR MD5; b73ee13b70c10bd2e6f6ffb46b1c1a71. XX CC ##FluData-START## CC EPI_ISOLATE_ID :: EPI_ISL_409176 CC NAME :: A/Arkansas/01/2020 CC TYPE :: H1N1 CC Segment_name :: NS CC HOST_AGE :: 32 CC PASSAGE :: Original CC LOCATION :: United States / Arkansas CC COLLECT_DATE :: 04-Jan-2020 CC Lineage :: A(H1N1)pdm09 CC SPECIMEN_ID :: 1933800000-118 ORIGINAL CC SENDER_LAB :: Arkansas Department of Health CC SEQLAB_SAMPLE_ID :: 3026054562 CC EPI_SEQUENCE_ID :: EPI1684255 CC ##FluData-END## XX FH Key Location/Qualifiers FH FT source 1..865 FT /organism="Influenza A virus" FT /segment="8" FT /host="Homo sapiens" FT /strain="A/Arkansas/01/2020" FT /serotype="H1N1" FT /mol_type="viral cRNA" FT /country="USA:Arkansas" FT /collection_date="04-Jan-2020" FT /db_xref="taxon:11320" FT gene 15..852 FT /gene="NEP" FT /gene_synonym="NS2" FT CDS join(15..44,517..852) FT /codon_start=1 FT /gene="NEP" FT /gene_synonym="NS2" FT /product="nuclear export protein" FT /note="nonstructural protein 2" FT /protein_id="QIJ23733.1" FT /translation="MESNTMSSFQDILMRMSKMQLGSSSEDLSGMVTRFESLKIYRDSL FT GEAVMRMGDLHYLQSRNEKWREQLGQKFEEIRWLIEEIRHRLKETENSFEQITFMQALQ FT LLLEVEQEIRAFSFQLI" FT gene 15..674 FT /gene="NS1" FT CDS 15..674 FT /codon_start=1 FT /gene="NS1" FT /product="nonstructural protein 1" FT /protein_id="QIJ23732.1" FT /translation="MESNTMSSFQVDCFLWHIRKRFADNGLGDAPFLDRLRRDQKSLKG FT RGNTIGLDIKTATLVGKQIVEWILKEESSETLRMAIASVPTSRYISDMTLEEMSRDWFM FT LMPRQKIIGPLCVRLDQAVMDKNIVLEANFSVIFNRLETLILLRAFTEEGTIVGEISPL FT PSLPGHTYEDVKNAVGVLIGGLEWNGNTVRVSENIQRFAWRSCDENGRPSLPPEQK" XX SQ Sequence 865 BP; 283 A; 162 C; 203 G; 217 T; 0 other; gtgacaaaaa cataatggaa tccaacacca tgtcaagctt tcaggtagac tgttttcttt 60 ggcatattcg caagcgattt gcagataatg gattgggtga tgccccattc cttgatcggc 120 tacgccgaga tcaaaagtcc ttaaaaggaa gaggcaacac cattggcctc gacatcaaaa 180 cagccactct tgttgggaaa caaattgtgg aatggatttt gaaagaggaa tccagcgaga 240 cccttagaat ggcaattgca tctgtaccta cttcgcgtta catttctgac atgaccctcg 300 aggaaatgtc acgagactgg ttcatgctta tgcctaggca aaagataata ggccctcttt 360 gcgtgcgatt ggaccaggcg gtcatggata agaacatagt actggaagca aacttcagtg 420 taatcttcaa ccgattagag accttgatac tactaagggc tttcactgag gagggaacaa 480 tagttggaga aatttcacca ttaccttctc ttccaggaca tacttatgag gatgtcaaaa 540 atgcagttgg ggtcctcatc ggaggacttg agtggaatgg taacacggtt cgagtctctg 600 aaaatataca gagattcgct tggagaagct gtgatgagaa tgggagacct tcactacctc 660 cagagcagaa atgagaagtg gcgagaacaa ttgggacaga aatttgagga aataagatgg 720 ttaattgaag aaatacgaca cagattgaaa gagacagaga atagttttga acaaataaca 780 tttatgcaag ccttacaact actgcttgaa gtagagcaag agataagagc tttctcgttt 840 cagcttattt aatgataaaa aacac 865 // ID MT167230; SV 1; linear; viral cRNA; STD; VRL; 2316 BP. XX AC MT167230; XX PR Project:PRJNA37813; XX DT 17-MAR-2020 (Rel. 144, Created) DT 17-MAR-2020 (Rel. 144, Last updated, Version 1) XX DE Influenza A virus (A/Arkansas/01/2020(H1N1)) segment 1 polymerase PB2 (PB2) DE gene, complete cds. XX KW . XX OS Influenza A virus OC Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Insthoviricetes; OC Articulavirales; Orthomyxoviridae; Alphainfluenzavirus. XX RN [1] RP 1-2316 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT "Influenza Sequencing Activity group"; RL Unpublished. XX RN [2] RP 1-2316 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT ; RL Submitted (09-MAR-2020) to the INSDC. RL WHO Collaborating Center for Surveillance, Epidemiology and Control of RL Influenza, Influenza Division, Centers for Disease Control and Prevention, RL 1600 Clifton Road, N.E., Atlanta, GA 30333, USA XX DR MD5; 778718a3833b91326204f858791fb64f. XX CC ##FluData-START## CC EPI_ISOLATE_ID :: EPI_ISL_409757 CC NAME :: A/Arkansas/01/2020 CC TYPE :: H1N1 CC Segment_name :: PB2 CC HOST_AGE :: 32 CC PASSAGE :: C1 (2020-01-23) CC LOCATION :: United States / Arkansas CC COLLECT_DATE :: 04-Jan-2020 CC Lineage :: A(H1N1)pdm09 CC RESIST_TO_OSELTAMIVIR :: Sensitive CC RESIST_TO_ZANAMVIR :: Sensitive CC SPECIMEN_ID :: 1933800000-118 ORIGINAL CC CHARACTERIZATION :: A/BRISBANE/02/2018-LIKE (H1N1)pdm09 CC SENDER_LAB :: Arkansas Department of Health CC SEQLAB_SAMPLE_ID :: 3026054562 CC EPI_SEQUENCE_ID :: EPI1688852 CC ##FluData-END## XX FH Key Location/Qualifiers FH FT source 1..2316 FT /organism="Influenza A virus" FT /segment="1" FT /host="Homo sapiens" FT /strain="A/Arkansas/01/2020" FT /serotype="H1N1" FT /mol_type="viral cRNA" FT /country="USA:Arkansas" FT /collection_date="04-Jan-2020" FT /db_xref="taxon:11320" FT gene 16..2295 FT /gene="PB2" FT CDS 16..2295 FT /codon_start=1 FT /gene="PB2" FT /product="polymerase PB2" FT /protein_id="QIJ23734.1" FT /translation="MERIKELRDLMSQSRTREIITKTTVDHMAIIKKYTSGRQEKNPAL FT RMKWMMAMKYPITADKRIMDIIPERNEQGQTLWSKINDAGSDRVMVSPLAVTWWNRNGP FT TTSTVHYPKVYKTYFEKVERLKHGTFGPVHFRNQVKIRRRVDTNPGHADLSAKEAQDVI FT MEVVFPNEVGARILTSESQLAITKEKKEELQNCKIAPLMVAYMLERELVRKTRFLPVAG FT GTSSVYIEVLHLTQGTCWEQMYTPGGKVRNDDVDQSLIIAARNIVRRAAVSADPLASLL FT EMCHSTQIGGVKMVDILKQNPTEEQAVDICKAAIGLRISSSFSFGGFTFKRTSGSSVKK FT EEEMLTGNLQTLKLRVHEGYEEFTMVGRRATAILRKATRRLIQLIVSGRDEQSIAEAII FT VAMVFSQEDCMIKAVRGDLNFVNRANQRLNPMHQLLRHFQKDAKVLFQNWGIETIDNVM FT GMIGILPDMTPSTEMSLRGIRVSKMGVDEYSSTERVVVSIDRFLRVRDQRGNVLLSPEE FT VSETQGTEKLTITYSSSMMWEINGPESVLVNTYQWIIRNWEIVKIQWSQDPTMLYNKME FT FEPFQSLVPKATRSRYSGFVRTLFQQMRDVLGTFDTVQIIKLLPFAAAPPEQSRMQFSS FT LTVNVRGSGLRILVRGNSPVFNYNKATKRLTILGKDAGALTEDPDEGTSGVESAVLRGF FT LILGKEDRRYGPALSINELSNLAKGEKANVLIGQGDIVLVMKRKRDSSILTDSQTATKR FT IRMAIN" XX SQ Sequence 2316 BP; 797 A; 434 C; 581 G; 504 T; 0 other; tcaaatatat tcaatatgga gagaataaaa gagctgagag atctaatgtc gcagtcccgc 60 actcgcgaga taatcactaa gaccactgtg gaccatatgg ccatcatcaa aaagtacaca 120 tcgggaaggc aagagaagaa ccccgcgctc aggatgaagt ggatgatggc aatgaaatac 180 ccaattacgg cagacaagag aataatggac ataatcccag agaggaatga acaaggacaa 240 accctctgga gcaaaataaa cgatgctgga tcagaccgag tgatggtatc acctctggca 300 gtaacatggt ggaataggaa tggtccaaca acaagtacag ttcattaccc taaggtatat 360 aaaacttatt tcgaaaaggt cgaaaggttg aaacatggta ccttcggccc tgtccacttc 420 agaaatcaag ttaaaataag gaggagagtt gatacaaacc ctggccatgc agatctcagt 480 gccaaggagg cacaggatgt gatcatggaa gttgttttcc caaatgaagt gggggcaaga 540 atactgacat cagagtcaca gctggcaata acaaaagaga agaaagaaga gctccagaat 600 tgtaaaattg ctcccttgat ggtggcgtac atgctagaaa gagaattggt ccgtaaaaca 660 aggtttctcc cagtagccgg tgggacaagc agtgtttata ttgaggtgtt gcacttgacc 720 caagggacgt gctgggagca gatgtacact ccaggaggaa aagtgagaaa tgatgatgtt 780 gaccaaagct tgattatcgc tgctagaaac atagtaagaa gagcagcagt gtcagcagac 840 ccattagcat ctctcttgga aatgtgccac agcacacaga ttggaggtgt gaagatggtg 900 gacatcctta aacagaatcc aactgaggag caagccgtag acatatgcaa ggcagcaata 960 gggttgagga tcagctcatc tttcagtttt ggtgggttca ctttcaaaag gacaagcgga 1020 tcatcagtca agaaagaaga agaaatgcta acgggcaacc tccaaacact gaaattaaga 1080 gtacatgaag ggtatgaaga attcacaatg gttgggagaa gagcaacagc tattctcaga 1140 aaggcaacca ggagattgat ccaattaata gtaagcggga gagacgagca gtcaatagct 1200 gaagcaataa ttgtggccat ggtattctca caagaggatt gcatgatcaa agcagttagg 1260 ggtgatctga actttgtcaa tagggcaaac cagagactga atcccatgca ccaactcttg 1320 aggcatttcc aaaaagatgc aaaagtgctt ttccagaact ggggaattga aaccatcgac 1380 aatgtgatgg gaatgatcgg aatactgccc gacatgaccc caagcacgga gatgtcactg 1440 agaggaataa gagtcagcaa gatgggagta gatgaatact ccagcacgga gagagtggta 1500 gtgagtattg accgattttt gagggtcaga gatcaaagag gaaacgtact attgtctccc 1560 gaagaagtca gtgaaacaca aggaactgag aagttgacaa taacttattc gtcatcaatg 1620 atgtgggaaa tcaacggccc tgagtcagtg ctagtcaaca cttatcaatg gataatcaga 1680 aactgggaaa ttgtgaaaat tcaatggtca caagacccca caatgttata caacaaaatg 1740 gaatttgaac catttcagtc tcttgttcct aaggcaacca gaagccggta cagtggattc 1800 gtaaggacac tgttccagca aatgagggat gtgcttggga catttgacac tgtccaaata 1860 ataaaacttc tcccctttgc tgctgctcca ccagaacaga gcaggatgca attttcttca 1920 ttaactgtga atgtgagagg atcagggtta aggatactgg taagaggcaa ttctccagta 1980 ttcaattaca acaaggcaac caaacgactt acgattcttg gaaaggatgc aggtgcattg 2040 actgaagatc cagatgaagg cacatctggg gtggagtctg ctgtcctgag aggattcctc 2100 attttaggca aagaagacag gagatatggc ccagcattaa gcatcaatga actgagcaat 2160 cttgcaaaag gagagaaagc taatgtgcta attgggcagg gagacatagt tttggtaatg 2220 aaacgaaaac gggactctag catacttact gatagccaga cagcgaccaa aagaattcgg 2280 atggccatca attagtgtcg aattgtttaa aaacga 2316 // ID MT167231; SV 1; linear; viral cRNA; STD; VRL; 2316 BP. XX AC MT167231; XX PR Project:PRJNA37813; XX DT 17-MAR-2020 (Rel. 144, Created) DT 17-MAR-2020 (Rel. 144, Last updated, Version 1) XX DE Influenza A virus (A/Arkansas/01/2020(H1N1)) segment 2 polymerase PB1 (PB1) DE gene, complete cds; and nonfunctional PB1-F2 protein (PB1-F2) gene, DE complete sequence. XX KW . XX OS Influenza A virus OC Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Insthoviricetes; OC Articulavirales; Orthomyxoviridae; Alphainfluenzavirus. XX RN [1] RP 1-2316 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT "Influenza Sequencing Activity group"; RL Unpublished. XX RN [2] RP 1-2316 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT ; RL Submitted (09-MAR-2020) to the INSDC. RL WHO Collaborating Center for Surveillance, Epidemiology and Control of RL Influenza, Influenza Division, Centers for Disease Control and Prevention, RL 1600 Clifton Road, N.E., Atlanta, GA 30333, USA XX DR MD5; 3c19070277d0b33dec2294272ac7a290. XX CC ##FluData-START## CC EPI_ISOLATE_ID :: EPI_ISL_409757 CC NAME :: A/Arkansas/01/2020 CC TYPE :: H1N1 CC Segment_name :: PB1 CC HOST_AGE :: 32 CC PASSAGE :: C1 (2020-01-23) CC LOCATION :: United States / Arkansas CC COLLECT_DATE :: 04-Jan-2020 CC Lineage :: A(H1N1)pdm09 CC RESIST_TO_OSELTAMIVIR :: Sensitive CC RESIST_TO_ZANAMVIR :: Sensitive CC SPECIMEN_ID :: 1933800000-118 ORIGINAL CC CHARACTERIZATION :: A/BRISBANE/02/2018-LIKE (H1N1)pdm09 CC SENDER_LAB :: Arkansas Department of Health CC SEQLAB_SAMPLE_ID :: 3026054562 CC EPI_SEQUENCE_ID :: EPI1688853 CC ##FluData-END## XX FH Key Location/Qualifiers FH FT source 1..2316 FT /organism="Influenza A virus" FT /segment="2" FT /host="Homo sapiens" FT /strain="A/Arkansas/01/2020" FT /serotype="H1N1" FT /mol_type="viral cRNA" FT /country="USA:Arkansas" FT /collection_date="04-Jan-2020" FT /db_xref="taxon:11320" FT gene 13..2286 FT /gene="PB1" FT CDS 13..2286 FT /codon_start=1 FT /gene="PB1" FT /product="polymerase PB1" FT /protein_id="QIJ23735.1" FT /translation="MDVNPTLLFLKIPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNR FT THQYSEKGKWTTNTETGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFE FT NSCLETMEVVQQTRVDKLTQGRQTYDWTLNRNQPAATALANTIEVFRSNDLTANESGRL FT IDFLKDVMESMNKEEIEITTHFQRKRRVRDNMTKKMVTQRTIGKKKQRLNKRGYLIRAL FT TLNTMTKDAERGKLKRRAIATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAK FT LANVVRKMMTNSQDTEISFTITGDNTKWNENQNPRMFLAMITYITRNQPEWFRNILSMA FT PIMFSNKMARLGKGYMFESKRMKIRTQIPAEMLASIDLKYFNESTKKKIEKIRPLLMDG FT TASLSPGMMMGMFNMLSTVLGVSILNLGQKKYTKTTYWWDGLQSSDDFALIVNAPNHEG FT IQAGVDRFYRTCKLVGINMSKKKSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSGV FT NESADMSIGVTVIKNNMINNDLGPATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFEL FT KKLWDQTQSKVGLLVSDGGPNLYNIRNLHIPEVCLKWELMDDDYRGRLCNPLNPFVSHK FT EIDSVNNAVVMPAHGPAKSMEYDAVATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCN FT LFEKFFPSSSYRRPVGISSMVEAMVSRARIDARVDFESGRIKKEEFSEIMKICSTIEEL FT RRQK" FT gene 107..379 FT /gene="PB1-F2" FT misc_feature 107..379 FT /gene="PB1-F2" FT /note="nonfunctional PB1-F2 protein due to mutation" XX SQ Sequence 2316 BP; 833 A; 436 C; 518 G; 529 T; 0 other; caaaccattt gaatggatgt caatccgact ttacttttcc taaaaattcc agcacaaaat 60 gccataagca ccacattccc ttatactgga gatcctccat acagccatgg aacaggaaca 120 ggatacacca tggacacagt aaacagaaca caccaatact cagaaaaggg gaagtggaca 180 acaaatacag agactggtgc accccagctc aacccgattg acggaccact acccgaggat 240 aatgaaccaa gtgggtatgc acaaacagac tgtgttctag aggctatggc tttccttgaa 300 gaatcccatc caggaatatt tgagaattca tgccttgaaa caatggaagt tgttcaacaa 360 acaagggtag ataaactgac tcaaggtcgc cagacttatg attggacatt aaacagaaat 420 caaccggcag caactgcatt ggccaacacc atagaagttt tcagatcaaa tgacctaaca 480 gctaacgagt caggaaggct aatagatttc ttaaaggatg tgatggaatc aatgaataaa 540 gaggaaatag agataacaac ccactttcaa agaaagagga gagtaagaga caacatgacc 600 aagaagatgg tcacgcaaag aacaataggg aagaaaaaac agagactgaa taagagaggc 660 tatctaataa gagcactgac attaaataca atgacaaaag atgcagagag aggcaagtta 720 aaaagaaggg ctatagcaac acctgggatg caaattagag gtttcgtata ctttgttgaa 780 actttagcta ggagcatttg cgaaaagctt gaacagtctg ggctcccagt agggggcaat 840 gaaaagaagg ccaaattggc aaatgttgtg agaaagatga tgactaattc acaagataca 900 gagatttctt tcacaatcac tggggacaac actaaatgga atgaaaatca aaatcctcga 960 atgttcctgg cgatgattac atatatcacc agaaatcaac ccgagtggtt tagaaacatc 1020 ctgagcatgg cacccataat gttctcaaat aaaatggcaa gactaggaaa agggtacatg 1080 ttcgagagta aaagaatgaa gattcgaaca caaataccag cagaaatgct agcaagcatt 1140 gatctaaagt atttcaatga atcaacaaag aagaaaattg agaagataag gcctctttta 1200 atggatggca cagcatcact gagtcctggg atgatgatgg gcatgttcaa catgctaagt 1260 acggtcttgg gagtatcgat actgaatctc ggacaaaaga aatacaccaa gacaacatac 1320 tggtgggatg ggctccaatc atccgacgat tttgctctca tagtgaatgc accaaaccat 1380 gaaggaatcc aagcaggagt ggacagattc tacaggacct gcaaattagt gggaatcaac 1440 atgagcaaaa agaagtccta tataaataag acagggacat ttgaattcac aagctttttt 1500 tatcgctatg gatttgtggc taattttagc atggagctac ccagcttcgg agtgtctgga 1560 gtaaatgaat cagctgacat gagtattgga gtaacagtga taaagaacaa catgataaac 1620 aatgaccttg gacctgcaac agctcagatg gctcttcaat tgttcatcaa agactacaga 1680 tacacatata ggtgtcatag gggagacaca caaattcaga cgagaagatc atttgagttg 1740 aagaagctat gggatcaaac ccaatcgaag gtagggctat tagtatcaga tggaggacca 1800 aacttataca acatacggaa tcttcacatt cctgaagtct gcttaaaatg ggagctaatg 1860 gatgatgatt atcgggggag actttgtaat cccctgaatc cctttgtgag tcataaggag 1920 attgattctg taaacaatgc tgtggtaatg ccagcccatg gcccagctaa aagcatggaa 1980 tatgatgccg ttgctactac acattcctgg attcccaaga ggaatcgttc tatcctcaac 2040 acaagccaaa ggggaatcct tgaggatgaa cagatgtacc agaagtgttg caatttattc 2100 gagaaatttt tccctagcag ttcatataga agaccggttg gaatttctag catggtggag 2160 gccatggtgt ctagggcccg gattgatgcc agagtcgact ttgagtctgg acggatcaag 2220 aaagaagagt tctctgagat catgaagatc tgttccacca ttgaagaact cagacggcaa 2280 aaataatgaa tttaacttgt ccttcatgaa aaaatg 2316 // ID MT167232; SV 1; linear; viral cRNA; STD; VRL; 2208 BP. XX AC MT167232; XX PR Project:PRJNA37813; XX DT 17-MAR-2020 (Rel. 144, Created) DT 17-MAR-2020 (Rel. 144, Last updated, Version 1) XX DE Influenza A virus (A/Arkansas/01/2020(H1N1)) segment 3 polymerase PA (PA) DE and PA-X protein (PA-X) genes, complete cds. XX KW . XX OS Influenza A virus OC Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Insthoviricetes; OC Articulavirales; Orthomyxoviridae; Alphainfluenzavirus. XX RN [1] RP 1-2208 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT "Influenza Sequencing Activity group"; RL Unpublished. XX RN [2] RP 1-2208 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT ; RL Submitted (09-MAR-2020) to the INSDC. RL WHO Collaborating Center for Surveillance, Epidemiology and Control of RL Influenza, Influenza Division, Centers for Disease Control and Prevention, RL 1600 Clifton Road, N.E., Atlanta, GA 30333, USA XX DR MD5; 942805b58921d2075b22ce38a7d29655. XX CC ##FluData-START## CC EPI_ISOLATE_ID :: EPI_ISL_409757 CC NAME :: A/Arkansas/01/2020 CC TYPE :: H1N1 CC Segment_name :: PA CC HOST_AGE :: 32 CC PASSAGE :: C1 (2020-01-23) CC LOCATION :: United States / Arkansas CC COLLECT_DATE :: 04-Jan-2020 CC Lineage :: A(H1N1)pdm09 CC RESIST_TO_OSELTAMIVIR :: Sensitive CC RESIST_TO_ZANAMVIR :: Sensitive CC SPECIMEN_ID :: 1933800000-118 ORIGINAL CC CHARACTERIZATION :: A/BRISBANE/02/2018-LIKE (H1N1)pdm09 CC SENDER_LAB :: Arkansas Department of Health CC SEQLAB_SAMPLE_ID :: 3026054562 CC EPI_SEQUENCE_ID :: EPI1688851 CC ##FluData-END## XX FH Key Location/Qualifiers FH FT source 1..2208 FT /organism="Influenza A virus" FT /segment="3" FT /host="Homo sapiens" FT /strain="A/Arkansas/01/2020" FT /serotype="H1N1" FT /mol_type="viral cRNA" FT /country="USA:Arkansas" FT /collection_date="04-Jan-2020" FT /db_xref="taxon:11320" FT gene 13..2163 FT /gene="PA" FT CDS 13..2163 FT /codon_start=1 FT /gene="PA" FT /product="polymerase PA" FT /protein_id="QIJ23736.1" FT /translation="MEDFVRQCFNPMIVELAEKAMKEYGEDPKIETNKFAAICTHLEVC FT FMYSDFHFIDERGESIIVESGDPNALLKHRFEIIEGRDRIMAWTVVNSICNTTGIEKPK FT FLPDLYDYKENRFIEIGVTRREVHIYYLEKANKIKSEKTHIHIFSFTGEEMATKADYTL FT DEESRARIKTRLFTIRQEMASRSLWDSFRQSERGEETIEEKFEITGTMRKLADQSLPPN FT FSSLENFRAYVDGFEPNGCIEGKLSQMSKEVNAKIEPFLRTTPRPLRLPDGPLCHQRSK FT FLLMDALKLSIEDPSHEGEGIPLYDAIKCMKTFFGWKEPKIVKPHEKGVNPNYLMAWKQ FT VLAELQDIENEEKIPRTKNMKKTSQLKWALGENMAPEKVDFDDCKDVGDLKQYDSDEPE FT PRSLASWVQNEFNKACELTDSSWIELDEIGEDVAPIEHIASMRRNYFTAEVSHCRATEY FT IMKGVYINTALLNASCAAMDDFQLIPMISKCRTKEGRRKTNLYGFIIKGRSHLRNDTDV FT VNFVSMEFSLTDPRLEPHKWEKYCVLEIGDMLLRTAIGQVSRPMFLYVRTNGTSKIKMK FT WGMEMRRCLLQSLQQIESMIEAESSVKEKDMTKEFFENKSETWPIGESPRGVEEGSIGK FT VCRTLLAKSVFNSLYASPQLEGFSAESRKLLLIVQALRDNLEPGTFDLGGLYEAIEECL FT INDPWVLLNASWFNSFLTHALK" FT gene 13..712 FT /gene="PA-X" FT CDS join(13..582,584..712) FT /codon_start=1 FT /ribosomal_slippage FT /gene="PA-X" FT /product="PA-X protein" FT /protein_id="QIJ23737.1" FT /translation="MEDFVRQCFNPMIVELAEKAMKEYGEDPKIETNKFAAICTHLEVC FT FMYSDFHFIDERGESIIVESGDPNALLKHRFEIIEGRDRIMAWTVVNSICNTTGIEKPK FT FLPDLYDYKENRFIEIGVTRREVHIYYLEKANKIKSEKTHIHIFSFTGEEMATKADYTL FT DEESRARIKTRLFTIRQEMASRSLWDSFVSPKEAKKQLKKSLKLQELCASLPTKVSHQT FT SPALKTSEPM" XX SQ Sequence 2208 BP; 747 A; 423 C; 514 G; 524 T; 0 other; tactgatcca aaatggaaga ctttgtgcga caatgcttca atccaatgat cgtcgagctt 60 gcggaaaagg caatgaaaga atatggggaa gaccccaaaa ttgaaactaa taagtttgct 120 gcaatttgca cacatttgga agtttgtttc atgtattcgg atttccattt cattgatgaa 180 cggggtgaat caataattgt agaatctggt gacccaaatg cactattgaa gcaccgattt 240 gagataattg aaggaagaga ccgaatcatg gcctggacag tggtgaacag tatatgtaac 300 acaacaggga tagagaagcc taaatttctt cctgatttgt atgattacaa agagaaccgg 360 ttcattgaaa ttggagtaac acggagagaa gtccacatat attacctaga gaaagccaac 420 aaaataaaat ctgagaagac acacattcac atcttttcat tcactggaga agagatggcc 480 accaaagcag actacaccct tgacgaagaa agcagagcaa gaatcaaaac taggcttttc 540 actataagac aagaaatggc cagtaggagt ctatgggatt cctttcgtca gtccgaaaga 600 ggcgaagaaa caattgaaga aaagtttgaa attacaggaa ctatgcgcaa gcttgccgac 660 caaagtctcc caccaaactt ctccagcctt gaaaacttca gagcctatgt agatggattc 720 gagccgaacg gctgcattga gggcaagctt tcccaaatgt caaaagaagt gaacgccaaa 780 attgaaccat tcttgaggac gacaccacgc cccctcagat tacctgatgg acctctttgc 840 catcagcggt caaagttcct gctgatggat gctctgaaat taagcattga agacccgagt 900 cacgaggggg aaggaatacc actatatgat gcaatcaaat gcatgaagac attctttggc 960 tggaaagagc ctaaaatagt caaaccacat gagaaaggcg taaatcccaa ttacctcatg 1020 gcttggaagc aggtgctagc agagctacag gacattgaaa atgaagagaa aatcccaagg 1080 acaaagaaca tgaagaaaac aagccaattg aagtgggcac tcggtgaaaa tatggcgcct 1140 gaaaaagtgg actttgatga ctgtaaagat gttggagacc ttaaacagta tgacagtgat 1200 gagccagagc ccagatctct agcaagctgg gtccaaaacg aattcaataa ggcatgtgaa 1260 ttgactgatt caagctggat agaacttgat gaaataggag aagatgttgc cccgattgaa 1320 catatagcaa gcatgaggag gaactatttt acagcagaag tgtcccactg cagggctact 1380 gaatacataa tgaagggagt gtacataaat acggcattgc ttaatgcatc ctgtgcagcc 1440 atggatgact ttcagctgat tccaatgata agcaaatgta ggaccaaaga aggaagacgg 1500 aaaacaaacc tgtatgggtt cattataaaa ggaaggtctc atttgagaaa tgatactgat 1560 gtagtgaact ttgtaagtat ggagttctca ctcactgatc caagactgga accacacaaa 1620 tgggaaaaat actgtgttct tgaaatagga gacatgctat tgagaactgc gataggtcaa 1680 gtgtcgaggc ccatgttcct atatgtgaga accaatggaa cctccaagat caagatgaaa 1740 tggggcatgg aaatgaggcg ctgccttctt caatctcttc aacagattga gagcatgatt 1800 gaagccgagt cttctgtcaa agagaaagac atgaccaagg aattctttga aaacaaatcg 1860 gaaacatggc caatcggaga gtcacccagg ggagtggagg aaggctctat tggaaaagtg 1920 tgcagaacct tactggcaaa atctgtgttc aacagtctat atgcttctcc acaacttgag 1980 gggttttcgg ctgaatcaag aaaattgctt ctcattgttc aggcacttag ggacaacctg 2040 gaacctggaa cctttgatct tggggggcta tatgaagcaa tcgaggagtg cttgattaat 2100 gatccctggg ttttgcttaa tgcatcttgg ttcaactcct tcctcacaca tgcactgaaa 2160 tagttgtggc aatgctacta tttgctatcc atattgtcca aaaaagta 2208 // ID MT167233; SV 1; linear; viral cRNA; STD; VRL; 1752 BP. XX AC MT167233; XX PR Project:PRJNA37813; XX DT 17-MAR-2020 (Rel. 144, Created) DT 17-MAR-2020 (Rel. 144, Last updated, Version 1) XX DE Influenza A virus (A/Arkansas/01/2020(H1N1)) segment 4 hemagglutinin (HA) DE gene, complete cds. XX KW . XX OS Influenza A virus OC Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Insthoviricetes; OC Articulavirales; Orthomyxoviridae; Alphainfluenzavirus. XX RN [1] RP 1-1752 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT "Influenza Sequencing Activity group"; RL Unpublished. XX RN [2] RP 1-1752 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT ; RL Submitted (09-MAR-2020) to the INSDC. RL WHO Collaborating Center for Surveillance, Epidemiology and Control of RL Influenza, Influenza Division, Centers for Disease Control and Prevention, RL 1600 Clifton Road, N.E., Atlanta, GA 30333, USA XX DR MD5; 3a53612384ff5532e33eaf5ca5e5bbd6. XX CC ##FluData-START## CC EPI_ISOLATE_ID :: EPI_ISL_409757 CC NAME :: A/Arkansas/01/2020 CC TYPE :: H1N1 CC Segment_name :: HA CC HOST_AGE :: 32 CC PASSAGE :: C1 (2020-01-23) CC LOCATION :: United States / Arkansas CC COLLECT_DATE :: 04-Jan-2020 CC Lineage :: A(H1N1)pdm09 CC RESIST_TO_OSELTAMIVIR :: Sensitive CC RESIST_TO_ZANAMVIR :: Sensitive CC SPECIMEN_ID :: 1933800000-118 ORIGINAL CC CHARACTERIZATION :: A/BRISBANE/02/2018-LIKE (H1N1)pdm09 CC SENDER_LAB :: Arkansas Department of Health CC SEQLAB_SAMPLE_ID :: 3026054562 CC EPI_SEQUENCE_ID :: EPI1688855 CC ##FluData-END## XX FH Key Location/Qualifiers FH FT source 1..1752 FT /organism="Influenza A virus" FT /segment="4" FT /host="Homo sapiens" FT /strain="A/Arkansas/01/2020" FT /serotype="H1N1" FT /mol_type="viral cRNA" FT /country="USA:Arkansas" FT /collection_date="04-Jan-2020" FT /db_xref="taxon:11320" FT gene 21..1721 FT /gene="HA" FT CDS 21..1721 FT /codon_start=1 FT /gene="HA" FT /product="hemagglutinin" FT /function="receptor binding and fusion protein" FT /protein_id="QIJ23738.1" FT /translation="MKAILVVLLYTFTTANADTLCIGYHANNSTDTVDTVLEKNVTVTH FT SVNLLEDKHNGKLCKLRGVAPLHLGKCNIAGWILGNPECESLSTARSWSYIVETSNSDN FT GTCYPGDFINYEELREQLSSVSSFERFEIFPKTSSWPNHDSNNGVTAACPQAGAKSFYK FT NLIWLVKKGNSYPMLNQTYINDKGKEVLVLWGIHHPPTTADQQSLYQNADAYVFVGTSR FT YSKKFKPEIAKRPKVRDQEGRMNYYWTLVDPGDKITFEATGNLVVPRYAFTMERDAGSG FT IIISDTPVHDCNTTCQTPEGAINTSLPFHNVNPITIGKCPKYVKSTKLRLATGLRNVPS FT IQSRGLFGAIAGFIEGGWTGMVDGWYGYHHQNEQGSGYAADLKSTQNAIDKITNKVNSV FT IEKMNTQFTAVGKEFNHLEKRIENLNKKVDDGFLDVWTYNAELLVLLENERTLDYHDSN FT VKNLYEKVRNQLKNNAKEIGNGCFEFYHKCDNTCMESVKNGTYDYPKYSEEAKLNREKI FT DGVKLESTRIYQILAIYSTAASSLVLVVSLGAISFWMCSNGSLQCRICI" FT sig_peptide 21..71 FT /gene="HA" FT mat_peptide 72..1052 FT /gene="HA" FT /product="HA1" FT mat_peptide 1053..1718 FT /gene="HA" FT /product="HA2" XX SQ Sequence 1752 BP; 634 A; 331 C; 379 G; 408 T; 0 other; ggaaaacaaa agcaacaaaa atgaaggcaa tactagtagt tctgctgtat acattcacaa 60 ccgcaaatgc agacacatta tgtataggtt atcatgcgaa caattcaaca gacactgtag 120 acacagtact agaaaagaat gtaacagtaa cacactctgt taatcttctg gaagacaagc 180 ataacggaaa actatgcaaa ctaagagggg tagccccatt gcacttgggt aaatgtaaca 240 ttgctggctg gatcctggga aatccagaat gtgaatcact ctccacagca agatcatggt 300 cctacattgt ggaaacatct aattcagaca atggaacgtg ttacccagga gatttcatca 360 attatgagga gctaagagag cagttgagct cagtgtcatc atttgaaagg tttgaaatat 420 tccccaagac aagttcatgg cctaatcatg actcgaacaa tggtgtaacg gcagcatgtc 480 ctcaagctgg agcaaaaagc ttctacaaaa acttgatatg gctggttaaa aaaggaaatt 540 catacccaat gctcaaccaa acctacatta atgataaagg gaaagaagtc ctcgtgctgt 600 ggggcattca ccatccacct actactgctg accaacaaag cctctatcag aatgcagatg 660 catatgtttt tgtggggaca tcaagataca gcaagaagtt caagccggaa atagcaaaaa 720 gacccaaagt gagggatcaa gaagggagaa tgaactatta ctggacacta gtagacccgg 780 gagacaaaat aacattcgaa gcaactggaa atctagtggt accgagatat gcattcacaa 840 tggaaagaga tgctggatct ggtattatca tttcagatac accagtccac gattgcaata 900 caacttgtca gacacctgag ggtgctataa acaccagcct cccatttcat aatgtaaatc 960 cgatcacaat tgggaaatgt ccaaagtatg taaaaagcac aaaattgaga ctggccacag 1020 gattgaggaa tgtcccgtct attcaatcta gaggcctatt cggggccatt gccggcttca 1080 ttgaaggggg atggacagga atggtagatg gatggtacgg ttatcaccat caaaatgagc 1140 agggatcagg atatgcagcc gatctgaaga gcacacaaaa tgccattgat aagattacta 1200 acaaagtaaa ttctgttatt gaaaagatga atacacagtt cacagcagtg ggtaaagagt 1260 tcaaccacct tgaaaaaaga atagagaatc taaataaaaa agttgatgat ggtttcctgg 1320 acgtttggac ttacaatgcc gaactgttgg ttctactgga aaacgaaaga actttggact 1380 atcacgattc aaatgtgaag aacttgtatg aaaaagtaag aaaccaatta aaaaacaatg 1440 ccaaggaaat tggaaacggc tgctttgaat tttaccacaa atgcgacaac acatgcatgg 1500 aaagtgtcaa gaatgggact tatgactacc caaaatactc agaggaagca aaattaaaca 1560 gagaaaaaat agatggagta aagctggaat caacaaggat ctaccagatt ttggcgatct 1620 attcaactgc cgccagttca ttggtactgg tagtctccct gggggcaatc agcttctgga 1680 tgtgctctaa tgggtctcta cagtgtagaa tatgtattta acattaggat ttcagaatca 1740 tgagaaaaac ac 1752 // ID MT167234; SV 1; linear; viral cRNA; STD; VRL; 1540 BP. XX AC MT167234; XX PR Project:PRJNA37813; XX DT 17-MAR-2020 (Rel. 144, Created) DT 17-MAR-2020 (Rel. 144, Last updated, Version 1) XX DE Influenza A virus (A/Arkansas/01/2020(H1N1)) segment 5 nucleocapsid protein DE (NP) gene, complete cds. XX KW . XX OS Influenza A virus OC Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Insthoviricetes; OC Articulavirales; Orthomyxoviridae; Alphainfluenzavirus. XX RN [1] RP 1-1540 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT "Influenza Sequencing Activity group"; RL Unpublished. XX RN [2] RP 1-1540 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT ; RL Submitted (09-MAR-2020) to the INSDC. RL WHO Collaborating Center for Surveillance, Epidemiology and Control of RL Influenza, Influenza Division, Centers for Disease Control and Prevention, RL 1600 Clifton Road, N.E., Atlanta, GA 30333, USA XX DR MD5; 916d64ef8749b26862421d7e4164ccef. XX CC ##FluData-START## CC EPI_ISOLATE_ID :: EPI_ISL_409757 CC NAME :: A/Arkansas/01/2020 CC TYPE :: H1N1 CC Segment_name :: NP CC HOST_AGE :: 32 CC PASSAGE :: C1 (2020-01-23) CC LOCATION :: United States / Arkansas CC COLLECT_DATE :: 04-Jan-2020 CC Lineage :: A(H1N1)pdm09 CC RESIST_TO_OSELTAMIVIR :: Sensitive CC RESIST_TO_ZANAMVIR :: Sensitive CC SPECIMEN_ID :: 1933800000-118 ORIGINAL CC CHARACTERIZATION :: A/BRISBANE/02/2018-LIKE (H1N1)pdm09 CC SENDER_LAB :: Arkansas Department of Health CC SEQLAB_SAMPLE_ID :: 3026054562 CC EPI_SEQUENCE_ID :: EPI1688848 CC ##FluData-END## XX FH Key Location/Qualifiers FH FT source 1..1540 FT /organism="Influenza A virus" FT /segment="5" FT /host="Homo sapiens" FT /strain="A/Arkansas/01/2020" FT /serotype="H1N1" FT /mol_type="viral cRNA" FT /country="USA:Arkansas" FT /collection_date="04-Jan-2020" FT /db_xref="taxon:11320" FT gene 34..1530 FT /gene="NP" FT CDS 34..1530 FT /codon_start=1 FT /gene="NP" FT /product="nucleocapsid protein" FT /protein_id="QIJ23739.1" FT /translation="MASQGTKRSYEQMETGGERQDTTEIRASVGRMIGGIGRFYIQMCT FT ELKLSDYDGRLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRIDGKW FT TRELILYDKEEIRRVWRQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRM FT CSLMQGSTLPRRSGAAGAAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTRVAYERM FT CNILKGKFQTAAQRAMMDQVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVY FT GLAVASGHDFEREGYSLVGIDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFED FT LRVSSFIRGKKVIPRGKLSTRGVQIASNENVETMDSNTLELRSRYWAIRTRSGGNTNQQ FT KASAGQISVQPTFSVQRNLPFERATIMAAFSGNNEGRTSDMRTEVIRMMESAKPEDLSF FT QGRGVFELSDEKATNPIVPSFDMSNEGSYFFGDNAEEYDN" XX SQ Sequence 1540 BP; 525 A; 299 C; 392 G; 324 T; 0 other; gtagataatc actcaatgag tgacatcgaa gccatggcgt ctcaaggcac caaacgatca 60 tatgaacaaa tggagactgg tggggagcgc caggatacca cagaaatcag agcatctgtt 120 ggaagaatga ttggtggaat cgggagattc tacatccaaa tgtgcactga actaaaactc 180 agtgattatg atggacgact aatccagaac agcataacaa tagagaggat ggtgctttct 240 gcttttgatg agagaagaaa taaataccta gaagagcatc caagtgctgg gaaggaccct 300 aagaaaacag gaggacccat ctatagaaga atagacggaa aatggacaag agaactcatc 360 ctttatgaca aagaagaaat aaggagagtt tggcgccaag caaacaatgg cgaagatgca 420 acagcaggtc ttactcatat catgatttgg cattccaatc tgaatgatgc cacatatcag 480 aggacaagag cacttgttcg cactggaatg gatcccagaa tgtgctccct aatgcaaggt 540 tcaacacttc ccaggaggtc tggtgccgca ggtgctgcag taaaaggagt tggaacaata 600 gctatggagt taatcagaat gataaaacgt ggaatcaatg accgaaattt ctggaggggt 660 gaaaatggac gaaggacaag agttgcttat gaaagaatgt gcaatatcct caaaggaaaa 720 tttcaaacag ctgcccagag ggcaatgatg gatcaagtaa gagaaagtcg aaacccagga 780 aacgctgaga ttgaagacct cattttcctg gcacgctcag cactcattct gagaggatca 840 gttgcacata aatcctgcct gcctgcttgt gtgtatgggc ttgcagtagc aagtggccat 900 gactttgaaa gggaaggata ctcactggtc gggatagacc cattcaaatt actccaaaac 960 agtcaagtgg tcagcctgat gagaccaaat gaaaatccag ctcacaagag tcaattggta 1020 tggatggcat gccactctgc tgcatttgaa gatttaagag tatcaagttt cataagagga 1080 aagaaagtga tcccaagagg aaagctttcc acaagagggg ttcagattgc ttcaaatgag 1140 aatgtggaaa ccatggactc caataccctg gaactaagaa gcagatactg ggccataaga 1200 accaggagtg gaggaaatac caatcaacag aaggcatctg caggccagat cagtgtgcag 1260 cctacattct cagtgcagcg aaatctccct tttgaaagag caaccattat ggcagcattc 1320 agcgggaaca atgaaggacg gacatccgac atgcgaacag aagttataag aatgatggaa 1380 agtgcaaagc cagaggattt gtccttccag gggcggggag tcttcgagct ctcggacgaa 1440 aaggcaacga acccgatcgt gccttccttt gacatgagta atgaagggtc ttatttcttc 1500 ggagacaatg cagaggagta tgacaattga agaaaaatac 1540 // ID MT167235; SV 1; linear; viral cRNA; STD; VRL; 1433 BP. XX AC MT167235; XX PR Project:PRJNA37813; XX DT 17-MAR-2020 (Rel. 144, Created) DT 17-MAR-2020 (Rel. 144, Last updated, Version 1) XX DE Influenza A virus (A/Arkansas/01/2020(H1N1)) segment 6 neuraminidase (NA) DE gene, complete cds. XX KW . XX OS Influenza A virus OC Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Insthoviricetes; OC Articulavirales; Orthomyxoviridae; Alphainfluenzavirus. XX RN [1] RP 1-1433 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT "Influenza Sequencing Activity group"; RL Unpublished. XX RN [2] RP 1-1433 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT ; RL Submitted (09-MAR-2020) to the INSDC. RL WHO Collaborating Center for Surveillance, Epidemiology and Control of RL Influenza, Influenza Division, Centers for Disease Control and Prevention, RL 1600 Clifton Road, N.E., Atlanta, GA 30333, USA XX DR MD5; 098ee37e182bf086859418c56c648718. XX CC ##FluData-START## CC EPI_ISOLATE_ID :: EPI_ISL_409757 CC NAME :: A/Arkansas/01/2020 CC TYPE :: H1N1 CC Segment_name :: NA CC HOST_AGE :: 32 CC PASSAGE :: C1 (2020-01-23) CC LOCATION :: United States / Arkansas CC COLLECT_DATE :: 04-Jan-2020 CC Lineage :: A(H1N1)pdm09 CC RESIST_TO_OSELTAMIVIR :: Sensitive CC RESIST_TO_ZANAMVIR :: Sensitive CC SPECIMEN_ID :: 1933800000-118 ORIGINAL CC CHARACTERIZATION :: A/BRISBANE/02/2018-LIKE (H1N1)pdm09 CC SENDER_LAB :: Arkansas Department of Health CC SEQLAB_SAMPLE_ID :: 3026054562 CC EPI_SEQUENCE_ID :: EPI1688854 CC ##FluData-END## XX FH Key Location/Qualifiers FH FT source 1..1433 FT /organism="Influenza A virus" FT /segment="6" FT /host="Homo sapiens" FT /strain="A/Arkansas/01/2020" FT /serotype="H1N1" FT /mol_type="viral cRNA" FT /country="USA:Arkansas" FT /collection_date="04-Jan-2020" FT /db_xref="taxon:11320" FT gene 9..1418 FT /gene="NA" FT CDS 9..1418 FT /codon_start=1 FT /gene="NA" FT /product="neuraminidase" FT /protein_id="QIJ23740.1" FT /translation="MNPNQKIITIGSICMTIGMANLILQIGNIISIWVSHSIQIGNQSQ FT IETCNKSVITYENNTWVNQTYVNISNTNSAARQSVAPVKLAGNSSLCPVSGWAIYSKDN FT SVRIGSKGDVFVIREPFISCSPLECRTFFLTQGALLNDKHSNGTIKDRSPYRTLMSCPI FT GEVPSPYNSRFESVAWSASACHDGTNWLTIGISGPDSGAVAVLKYNGIITDTIKSWRNN FT ILRTQESECACVNGSCFTIMTDGPSDGQASYKIFRIEKGKIIKSVEMKAPNYHYEECSC FT YPDSSEITCVCRDNWHGSNRPWVSFNQNLEYQMGYICSGVFGDNPRPNDKTGSCGPVSS FT NGANGVKGFSFKYGNGVWIGRTKSISSRKGFEMIWDPNGWTGTDNKFSKKQDIVGINEW FT SGYSGSFVQHPELTGLNCIRPCFWVELIRGRPEENTIWTSGSSISFCGVDSDIVGWSWP FT DGAELPFTVDK" XX SQ Sequence 1433 BP; 462 A; 264 C; 334 G; 373 T; 0 other; agtttaaaat gaatccaaac caaaagataa taaccattgg ttctatctgt atgacaattg 60 gaatggctaa cttaatatta caaattggaa acataatctc aatatgggtt agccactcaa 120 ttcaaattgg aaatcaaagc cagattgaaa catgcaataa aagcgtcatt acttatgaaa 180 acaacacttg ggtaaatcag acatatgtta acatcagcaa caccaactct gctgctagac 240 agtcagtggc tcccgtgaaa ttagcgggca attcctctct ctgccctgtt agtggatggg 300 ctatatacag taaagacaac agtgtaagaa tcggttccaa gggggatgtg tttgtcataa 360 gggaaccatt catatcatgc tctcccttgg aatgcagaac cttcttcttg actcaagggg 420 ctttgctaaa tgacaaacat tccaatggaa ccattaaaga cagaagccca tatcgaaccc 480 taatgagctg tcctattggt gaagttccct ctccatacaa ctcaagattt gagtcagtcg 540 cttggtcagc aagtgcttgt catgatggca ccaattggct aacaattgga atttccggcc 600 cagacagtgg ggcagtggct gtgttaaaat acaatggcat aataacagac actatcaaga 660 gttggaggaa caatatattg agaacacaag agtctgaatg tgcatgtgta aatggttctt 720 gctttaccat aatgaccgat ggaccaagtg atggacaggc ctcatacaaa atcttcagaa 780 tagaaaaggg aaagataatc aaatcagtcg aaatgaaagc ccctaattat cactatgagg 840 aatgctcctg ttaccctgat tctagtgaaa tcacctgtgt gtgcagggat aactggcatg 900 gctcgaatcg accgtgggtg tctttcaacc agaatctgga atatcagatg ggatacatat 960 gcagtggggt tttcggagac aatccacgcc ctaatgataa gacaggcagt tgtggtccag 1020 tatcgtctaa tggagcaaat ggggtaaaag gattttcatt caaatacggc aatggtgttt 1080 ggatagggag aactaagagc attagttcaa gaaaaggttt tgagatgatt tgggatccga 1140 atggatggac tgggactgac aataaattct caaaaaagca agatatcgta ggaataaatg 1200 agtggtcagg gtatagcggg agttttgttc agcatccaga actaacaggg ctgaattgta 1260 taagaccttg cttctgggtt gaactaataa gaggacgacc cgaagagaac acaatctgga 1320 ctagcgggag cagcatatcc ttttgtggtg tagacagtga cattgtgggt tggtcttggc 1380 cagacggtgc tgagttgcca tttaccgttg acaagtaatt tgttcaaaaa act 1433 // ID MT167236; SV 1; linear; viral cRNA; STD; VRL; 1002 BP. XX AC MT167236; XX PR Project:PRJNA37813; XX DT 17-MAR-2020 (Rel. 144, Created) DT 17-MAR-2020 (Rel. 144, Last updated, Version 1) XX DE Influenza A virus (A/Arkansas/01/2020(H1N1)) segment 7 matrix protein 2 DE (M2) and matrix protein 1 (M1) genes, complete cds. XX KW . XX OS Influenza A virus OC Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Insthoviricetes; OC Articulavirales; Orthomyxoviridae; Alphainfluenzavirus. XX RN [1] RP 1-1002 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT "Influenza Sequencing Activity group"; RL Unpublished. XX RN [2] RP 1-1002 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT ; RL Submitted (09-MAR-2020) to the INSDC. RL WHO Collaborating Center for Surveillance, Epidemiology and Control of RL Influenza, Influenza Division, Centers for Disease Control and Prevention, RL 1600 Clifton Road, N.E., Atlanta, GA 30333, USA XX DR MD5; ad378ba89b338f5fa86fa58a1f3b61c8. XX CC ##FluData-START## CC EPI_ISOLATE_ID :: EPI_ISL_409757 CC NAME :: A/Arkansas/01/2020 CC TYPE :: H1N1 CC Segment_name :: M CC HOST_AGE :: 32 CC PASSAGE :: C1 (2020-01-23) CC LOCATION :: United States / Arkansas CC COLLECT_DATE :: 04-Jan-2020 CC Lineage :: A(H1N1)pdm09 CC RESIST_TO_OSELTAMIVIR :: Sensitive CC RESIST_TO_ZANAMVIR :: Sensitive CC SPECIMEN_ID :: 1933800000-118 ORIGINAL CC CHARACTERIZATION :: A/BRISBANE/02/2018-LIKE (H1N1)pdm09 CC SENDER_LAB :: Arkansas Department of Health CC SEQLAB_SAMPLE_ID :: 3026054562 CC EPI_SEQUENCE_ID :: EPI1688850 CC ##FluData-END## XX FH Key Location/Qualifiers FH FT source 1..1002 FT /organism="Influenza A virus" FT /segment="7" FT /host="Homo sapiens" FT /strain="A/Arkansas/01/2020" FT /serotype="H1N1" FT /mol_type="viral cRNA" FT /country="USA:Arkansas" FT /collection_date="04-Jan-2020" FT /db_xref="taxon:11320" FT gene 14..995 FT /gene="M2" FT CDS join(14..39,728..995) FT /codon_start=1 FT /gene="M2" FT /product="matrix protein 2" FT /protein_id="QIJ23742.1" FT /translation="MSLLTEVETPTRSEWECRCSGSNDPLVIAANIIGILHLILWITDR FT LFFKCIYRRFKYGLKRGPSTEGVPESMREEYQQEQQSAVDVDDGHFVNIELE" FT gene 14..772 FT /gene="M1" FT CDS 14..772 FT /codon_start=1 FT /gene="M1" FT /product="matrix protein 1" FT /protein_id="QIJ23741.1" FT /translation="MSLLTEVETYVLSIIPSGPLKAEIAQRLESVFAGKNTDLEALMEW FT LKTRPILSPLTKGILGFVFTLTVPSERGLQRRRFIQNALNGNGDPNNMDRAVKLYKKLK FT REITFHGAKEVSLSYSTGALASCMGLIYNRMGTVTTEAAFGLVCATCEQIADSQHRSHR FT QMATTTNPLIRHENRMVLASTTAKAMEQVAGSSEQAAEAMEVANKTRQMVHAMRTIGTH FT PSSSAGLRDDLLENLQAYQKRMGVQMQRFK" XX SQ Sequence 1002 BP; 301 A; 208 C; 253 G; 240 T; 0 other; tagatgttta aagatgagtc ttctaaccga ggtcgaaacg tacgttcttt ctatcatccc 60 gtcaggcccc ctcaaagccg agatcgcaca gagactggaa agtgtctttg caggaaagaa 120 cacagatctt gaggctctca tggaatggct aaagacaaga ccaatcttgt cacctctgac 180 taagggaatt ttaggatttg tgttcacgct caccgtgccc agtgagcgag gactgcagcg 240 taggcgcttt atccaaaatg ccctaaatgg aaatggggac ccaaacaaca tggatagagc 300 agttaaacta tacaagaaac tcaaaagaga aataacgttc catggggcca aggaggtgtc 360 actaagctat tcaactggtg cacttgcaag ttgcatgggc ctcatataca acaggatggg 420 aacagtgacc acagaagctg ctttcggtct agtttgtgcc acttgtgaac agattgctga 480 ttcacagcat cggtctcaca gacaaatggc tactaccaca aatccactaa tcaggcatga 540 aaacagaatg gtgttggcta gcactacggc aaaggctatg gaacaggtgg ctggatcgag 600 tgaacaggca gcggaggcca tggaggttgc taataagact aggcagatgg tacatgcaat 660 gagaactatt ggaactcatc ctagctccag tgctggtcta agagatgacc ttcttgaaaa 720 tttgcaggcc taccagaagc gaatgggagt gcagatgcag cggttcaaat gatcctctcg 780 tcattgcagc aaacatcatt gggatcttgc acctgatatt gtggattact gatcgtcttt 840 ttttcaaatg catttatcgt cgctttaaat acggtttgaa aagagggcct tctacggaag 900 gagtgcctga gtccatgagg gaagaatatc aacaggagca gcagagtgct gtggatgttg 960 acgatggtca ttttgtcaac atagagctag agtaaaaaac ta 1002 // ID MT167237; SV 1; linear; viral cRNA; STD; VRL; 865 BP. XX AC MT167237; XX PR Project:PRJNA37813; XX DT 17-MAR-2020 (Rel. 144, Created) DT 17-MAR-2020 (Rel. 144, Last updated, Version 1) XX DE Influenza A virus (A/Arkansas/01/2020(H1N1)) segment 8 nuclear export DE protein (NEP) and nonstructural protein 1 (NS1) genes, complete cds. XX KW . XX OS Influenza A virus OC Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Insthoviricetes; OC Articulavirales; Orthomyxoviridae; Alphainfluenzavirus. XX RN [1] RP 1-865 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT "Influenza Sequencing Activity group"; RL Unpublished. XX RN [2] RP 1-865 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT ; RL Submitted (09-MAR-2020) to the INSDC. RL WHO Collaborating Center for Surveillance, Epidemiology and Control of RL Influenza, Influenza Division, Centers for Disease Control and Prevention, RL 1600 Clifton Road, N.E., Atlanta, GA 30333, USA XX DR MD5; b73ee13b70c10bd2e6f6ffb46b1c1a71. XX CC ##FluData-START## CC EPI_ISOLATE_ID :: EPI_ISL_409757 CC NAME :: A/Arkansas/01/2020 CC TYPE :: H1N1 CC Segment_name :: NS CC HOST_AGE :: 32 CC PASSAGE :: C1 (2020-01-23) CC LOCATION :: United States / Arkansas CC COLLECT_DATE :: 04-Jan-2020 CC Lineage :: A(H1N1)pdm09 CC RESIST_TO_OSELTAMIVIR :: Sensitive CC RESIST_TO_ZANAMVIR :: Sensitive CC SPECIMEN_ID :: 1933800000-118 ORIGINAL CC CHARACTERIZATION :: A/BRISBANE/02/2018-LIKE (H1N1)pdm09 CC SENDER_LAB :: Arkansas Department of Health CC SEQLAB_SAMPLE_ID :: 3026054562 CC EPI_SEQUENCE_ID :: EPI1688849 CC ##FluData-END## XX FH Key Location/Qualifiers FH FT source 1..865 FT /organism="Influenza A virus" FT /segment="8" FT /host="Homo sapiens" FT /strain="A/Arkansas/01/2020" FT /serotype="H1N1" FT /mol_type="viral cRNA" FT /country="USA:Arkansas" FT /collection_date="04-Jan-2020" FT /db_xref="taxon:11320" FT gene 15..852 FT /gene="NEP" FT /gene_synonym="NS2" FT CDS join(15..44,517..852) FT /codon_start=1 FT /gene="NEP" FT /gene_synonym="NS2" FT /product="nuclear export protein" FT /note="nonstructural protein 2" FT /protein_id="QIJ23744.1" FT /translation="MESNTMSSFQDILMRMSKMQLGSSSEDLSGMVTRFESLKIYRDSL FT GEAVMRMGDLHYLQSRNEKWREQLGQKFEEIRWLIEEIRHRLKETENSFEQITFMQALQ FT LLLEVEQEIRAFSFQLI" FT gene 15..674 FT /gene="NS1" FT CDS 15..674 FT /codon_start=1 FT /gene="NS1" FT /product="nonstructural protein 1" FT /protein_id="QIJ23743.1" FT /translation="MESNTMSSFQVDCFLWHIRKRFADNGLGDAPFLDRLRRDQKSLKG FT RGNTIGLDIKTATLVGKQIVEWILKEESSETLRMAIASVPTSRYISDMTLEEMSRDWFM FT LMPRQKIIGPLCVRLDQAVMDKNIVLEANFSVIFNRLETLILLRAFTEEGTIVGEISPL FT PSLPGHTYEDVKNAVGVLIGGLEWNGNTVRVSENIQRFAWRSCDENGRPSLPPEQK" XX SQ Sequence 865 BP; 283 A; 162 C; 203 G; 217 T; 0 other; gtgacaaaaa cataatggaa tccaacacca tgtcaagctt tcaggtagac tgttttcttt 60 ggcatattcg caagcgattt gcagataatg gattgggtga tgccccattc cttgatcggc 120 tacgccgaga tcaaaagtcc ttaaaaggaa gaggcaacac cattggcctc gacatcaaaa 180 cagccactct tgttgggaaa caaattgtgg aatggatttt gaaagaggaa tccagcgaga 240 cccttagaat ggcaattgca tctgtaccta cttcgcgtta catttctgac atgaccctcg 300 aggaaatgtc acgagactgg ttcatgctta tgcctaggca aaagataata ggccctcttt 360 gcgtgcgatt ggaccaggcg gtcatggata agaacatagt actggaagca aacttcagtg 420 taatcttcaa ccgattagag accttgatac tactaagggc tttcactgag gagggaacaa 480 tagttggaga aatttcacca ttaccttctc ttccaggaca tacttatgag gatgtcaaaa 540 atgcagttgg ggtcctcatc ggaggacttg agtggaatgg taacacggtt cgagtctctg 600 aaaatataca gagattcgct tggagaagct gtgatgagaa tgggagacct tcactacctc 660 cagagcagaa atgagaagtg gcgagaacaa ttgggacaga aatttgagga aataagatgg 720 ttaattgaag aaatacgaca cagattgaaa gagacagaga atagttttga acaaataaca 780 tttatgcaag ccttacaact actgcttgaa gtagagcaag agataagagc tttctcgttt 840 cagcttattt aatgataaaa aacac 865 // ID MT167238; SV 1; linear; viral cRNA; STD; VRL; 2316 BP. XX AC MT167238; XX PR Project:PRJNA37813; XX DT 17-MAR-2020 (Rel. 144, Created) DT 17-MAR-2020 (Rel. 144, Last updated, Version 1) XX DE Influenza A virus (A/Arkansas/02/2020(H1N1)) segment 1 polymerase PB2 (PB2) DE gene, complete cds. XX KW . XX OS Influenza A virus OC Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Insthoviricetes; OC Articulavirales; Orthomyxoviridae; Alphainfluenzavirus. XX RN [1] RP 1-2316 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT "Influenza Sequencing Activity group"; RL Unpublished. XX RN [2] RP 1-2316 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT ; RL Submitted (09-MAR-2020) to the INSDC. RL WHO Collaborating Center for Surveillance, Epidemiology and Control of RL Influenza, Influenza Division, Centers for Disease Control and Prevention, RL 1600 Clifton Road, N.E., Atlanta, GA 30333, USA XX DR MD5; b825c2f8bfbaa7ff287199dbed6f6188. XX CC ##FluData-START## CC EPI_ISOLATE_ID :: EPI_ISL_409490 CC NAME :: A/Arkansas/02/2020 CC TYPE :: H1N1 CC Segment_name :: PB2 CC HOST_AGE :: 32 CC HOST_GENDER :: M CC PASSAGE :: Original CC LOCATION :: United States / Arkansas CC COLLECT_DATE :: 05-Jan-2020 CC Lineage :: A(H1N1)pdm09 CC SPECIMEN_ID :: 1933800000-119 ORIGINAL CC SENDER_LAB :: Arkansas Department of Health CC SEQLAB_SAMPLE_ID :: 3026054563 CC EPI_SEQUENCE_ID :: EPI1686655 CC ##FluData-END## XX FH Key Location/Qualifiers FH FT source 1..2316 FT /organism="Influenza A virus" FT /segment="1" FT /host="Homo sapiens" FT /strain="A/Arkansas/02/2020" FT /serotype="H1N1" FT /mol_type="viral cRNA" FT /country="USA:Arkansas" FT /collection_date="05-Jan-2020" FT /db_xref="taxon:11320" FT gene 16..2295 FT /gene="PB2" FT CDS 16..2295 FT /codon_start=1 FT /gene="PB2" FT /product="polymerase PB2" FT /protein_id="QIJ23745.1" FT /translation="MERIKELRDLMSQSRTREILTKTTVDHMAIIKKYTSGRQEKNPAL FT RMKWMMAMKYPITADKRIMDIIPERNEQGQTLWSKTNDAGSDRVMVSPLAVTWWNRNGP FT TTSTVHYPKVYKTYFEKVERLKHGTFGPVHFRNQVKIRRRVDTNPGHADLSAKEAQDVI FT MEVVFPNEVGARILTSESQLAITKEKKEELQNCKIAPLMVAYMLERELVRKTRFLPVAG FT GTGSVYIEVLHLTQGTCWEQMYTPGGEVRNDDVDQSLIIAARNIVRRAAVSADPLASLL FT EMCHSTQIGGVKMVDIIKQNPTEEQAVDICKAAIGLRISSSFSFGGFTFKRTSGSSVKK FT EEEMLTGNLQTLKLRVHEGYEEFTMVGRRATAILRKATRRLIQLIVSGRDEQSIAEAII FT VAMVFSQEDCMIKAVRGDLNFVNRANQRLNPMHQLLRHFQKDAKVLFQNWGIETIDNVM FT GMIGILPDMTPSTEMSLRGIRVSKMGVDEYSSTERVVVSIDRFLRVRDQRGNVLLSPEE FT VSETQGTEKLTITYSSSMMWEINGPESVLVNTYQWIIRNWEIVKIQWSQDPTMLYNKME FT FEPFQSLVPKAIRSRYSGFVRTLFQQMRDVLGTFDTVQIIKLLPFAAAPPEQSRMQFSS FT LTVNVRGSGLRILVRGNSPVFNYNKATKRLTVLGKDAGALTEDPDEGTSGVESAVLRGF FT LILGKEDKRYGPALSINELSNLAKGEKANVLIGQGDIVLVMKRKRDSSILTDSQTATKR FT IRMAIN" XX SQ Sequence 2316 BP; 796 A; 435 C; 584 G; 501 T; 0 other; tcaaatatat tcaatatgga gagaataaaa gagctgagag atctaatgtc acagtcccgc 60 actcgcgaga tactcactaa gaccactgtg gaccatatgg ccatcatcaa aaagtacaca 120 tcgggaaggc aagagaagaa ccccgcactc agaatgaagt ggatgatggc aatgaaatac 180 ccaattacgg cagacaagag aataatggac ataatcccag agaggaatga acaaggacag 240 accctctgga gcaaaacaaa cgatgctgga tcagaccgag tgatggtatc acctctggcc 300 gtaacatggt ggaatagaaa tggcccaaca acaagtacag ttcattaccc taaggtatat 360 aaaacttatt tcgaaaaggt cgaaaggttg aaacatggca ccttcggccc tgtccatttc 420 agaaatcaag tcaaaataag gaggagagtt gatacaaacc ctggccatgc agatctcagt 480 gccaaagaag cacaggatgt gattatggaa gttgttttcc caaatgaagt gggggcaaga 540 atactgacat cagagtcaca gctggcaata acaaaagaga agaaagaaga gctccagaat 600 tgtaaaattg ctcccttgat ggtggcgtac atgctagaaa gagaattggt ccgtaaaaca 660 aggtttctcc cggtagccgg tgggacaggc agtgtttata ttgaggtgtt acacttgacc 720 caagggacgt gctgggagca gatgtacact ccaggaggag aagtgagaaa tgatgatgtt 780 gaccaaagct tgattatcgc tgctagaaac atagtaagaa gagcagcagt gtcagcagac 840 ccattagcat ctctcttgga aatgtgccac agcacacaga ttgggggtgt gaagatggtg 900 gacatcatta aacagaatcc aactgaggag caagccgtag acatatgcaa ggcagcaata 960 gggttgagga tcagctcatc ttttagtttt ggtgggttca ctttcaaaag gacaagcgga 1020 tcatcagtca agaaagaaga agaaatgcta acgggcaacc tccaaacact gaaattaaga 1080 gtacatgaag ggtatgaaga attcacaatg gttgggagaa gagcaacagc tattctcaga 1140 aaggcaacca ggagattgat ccaattaata gtaagcggga gagacgagca gtcaatagct 1200 gaagcaataa ttgtggccat ggtattctca caagaggatt gcatgatcaa agcagttagg 1260 ggagatctga actttgtcaa tagggcaaac cagagactga atcccatgca ccaactcttg 1320 aggcatttcc aaaaagatgc aaaagtgctt ttccagaact ggggaattga aaccatcgac 1380 aatgtgatgg gaatgatcgg aatactgccc gacatgaccc caagcacgga gatgtcactg 1440 agaggaataa gagtcagcaa gatgggagta gatgaatact ccagcacgga gagagtggta 1500 gtgagtattg accgattttt gagggttaga gatcaaagag gaaacgtact attgtctccc 1560 gaagaggtca gtgaaacgca aggaactgag aagttgacaa taacttattc gtcatcaatg 1620 atgtgggaaa taaacggccc tgagtcagtg ctagtcaaca cttatcaatg gataatcaga 1680 aactgggaaa ttgtgaaaat tcaatggtca caagacccca caatgttata caacaaaatg 1740 gaatttgaac catttcagtc tcttgtccct aaggcaatca gaagccggta cagtggattc 1800 gtaaggacac tgttccagca aatgagggat gtgcttggga catttgacac tgtccaaata 1860 ataaaacttc tcccctttgc tgctgctcca ccagaacaga gcaggatgca attttcttca 1920 ttgactgtga atgtgagagg atcagggtta aggatactgg taagaggcaa ttctccagta 1980 ttcaattaca acaaggcaac caaacgactt acggttcttg gaaaggatgc aggtgcattg 2040 actgaagatc cagatgaagg cacatctggg gtggagtctg ctgtcctgag aggattcctc 2100 attttaggca aagaagacaa gagatatggc ccagcattaa gcatcaatga actgagcaat 2160 cttgcaaaag gagagaaagc taatgtgcta attgggcagg gggacatagt gttggtaatg 2220 aaacgaaaac gggactctag catacttact gacagccaga cagcgaccaa aagaattcgg 2280 atggccatca attagtgtcg aattgtttaa aaacga 2316 // ID MT167239; SV 1; linear; viral cRNA; STD; VRL; 2316 BP. XX AC MT167239; XX PR Project:PRJNA37813; XX DT 17-MAR-2020 (Rel. 144, Created) DT 17-MAR-2020 (Rel. 144, Last updated, Version 1) XX DE Influenza A virus (A/Arkansas/02/2020(H1N1)) segment 2 polymerase PB1 (PB1) DE gene, complete cds; and nonfunctional PB1-F2 protein (PB1-F2) gene, DE complete sequence. XX KW . XX OS Influenza A virus OC Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Insthoviricetes; OC Articulavirales; Orthomyxoviridae; Alphainfluenzavirus. XX RN [1] RP 1-2316 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT "Influenza Sequencing Activity group"; RL Unpublished. XX RN [2] RP 1-2316 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT ; RL Submitted (09-MAR-2020) to the INSDC. RL WHO Collaborating Center for Surveillance, Epidemiology and Control of RL Influenza, Influenza Division, Centers for Disease Control and Prevention, RL 1600 Clifton Road, N.E., Atlanta, GA 30333, USA XX DR MD5; f5d17456f260a98061a468357b3bf988. XX CC ##FluData-START## CC EPI_ISOLATE_ID :: EPI_ISL_409490 CC NAME :: A/Arkansas/02/2020 CC TYPE :: H1N1 CC Segment_name :: PB1 CC HOST_AGE :: 32 CC HOST_GENDER :: M CC PASSAGE :: Original CC LOCATION :: United States / Arkansas CC COLLECT_DATE :: 05-Jan-2020 CC Lineage :: A(H1N1)pdm09 CC SPECIMEN_ID :: 1933800000-119 ORIGINAL CC SENDER_LAB :: Arkansas Department of Health CC SEQLAB_SAMPLE_ID :: 3026054563 CC EPI_SEQUENCE_ID :: EPI1686656 CC ##FluData-END## XX FH Key Location/Qualifiers FH FT source 1..2316 FT /organism="Influenza A virus" FT /segment="2" FT /host="Homo sapiens" FT /strain="A/Arkansas/02/2020" FT /serotype="H1N1" FT /mol_type="viral cRNA" FT /country="USA:Arkansas" FT /collection_date="05-Jan-2020" FT /db_xref="taxon:11320" FT gene 13..2286 FT /gene="PB1" FT CDS 13..2286 FT /codon_start=1 FT /gene="PB1" FT /product="polymerase PB1" FT /protein_id="QIJ23746.1" FT /translation="MDVNPTLLFLKIPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNR FT THQYSEKGKWTTNTETGAPQLNPVDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFE FT NSCLETMEVVQQTRVDKLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRL FT IDFLKDVMESMNKEEIEITTHFQRKRRVRDNMTKKMVTQRTIGKKKQRLNKRGYLIRAL FT TLNTMTKDAERGKLKRRAIATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAK FT LANVVRKMMTNSQDTEISFTITGDNTKWNENQNPRMFLAMITYITRNQPEWFRNILSMA FT PIMFSNKMARLGKGYMFESKRMKIRTQIPAEMLASIDLKYFNESTKKKIEKIRPLLMDG FT TASLSPGMMMGMFNMLSTVLGVSILNLGQKKYTKTTYWWDGLQSSDDFALIVNAPNHEG FT IQAGVDRFYRTCKLVGINMSKKKSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSGV FT NESADMSIGVTVIKNNMINNDLGPATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFEL FT KKLWDQTQSKVGLLVSDGGPNLYNIRNLHIPEVCLKWELMDDDYRGRLCNPLNPFVSHK FT EIDSVNNAVVMPAHGPAKSMEYDAVATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCN FT LFEKFFPSSSYRRPVGISSMVEAMVSRARIDARVDFESGRIKKEEFSEIMKICSTIEEL FT RRQK" FT gene 107..379 FT /gene="PB1-F2" FT misc_feature 107..379 FT /gene="PB1-F2" FT /note="nonfunctional PB1-F2 protein due to mutation" XX SQ Sequence 2316 BP; 831 A; 436 C; 518 G; 531 T; 0 other; caaaccattt gaatggatgt caatccgact ctacttttcc taaaaattcc agcacaaaat 60 gccataagca ccacattccc ttatactgga gatcctccat acagccatgg gacaggaaca 120 ggatacacca tggacacagt aaacagaaca catcaatact cagaaaaggg gaagtggaca 180 acaaacacag agactggtgc accccagctc aacccggttg acggaccact acctgaagat 240 aatgaaccaa gtgggtatgc acaaacagac tgtgttctag aggctatggc tttccttgaa 300 gaatcccatc caggaatatt tgagaattca tgccttgaaa caatggaagt tgttcaacaa 360 acaagggtag ataaactgac tcaaggtcgc cagacttatg attggacatt aaacagaaat 420 caaccggcag caactgcatt ggccaacacc atagaagttt tcagatcgaa tggcctaaca 480 gctaacgagt caggaaggct aatagatttc ttaaaggatg tgatggaatc aatgaacaaa 540 gaggaaatag agataacaac ccactttcaa agaaaaagga gagtaaggga caacatgacc 600 aagaagatgg tcacgcaaag aacaatagga aagaagaaac agaggctgaa taagagaggc 660 tatctaataa gagcactgac attaaatacg atgaccaaag atgcagagag aggcaagtta 720 aaaagaaggg ctatcgcaac acctgggatg cagattagag gtttcgtata ctttgttgaa 780 actttagcta ggagcatttg cgaaaagctt gaacagtctg ggctcccagt aggaggcaat 840 gaaaagaagg ccaaattggc aaatgttgtg agaaagatga tgactaattc acaagataca 900 gagatctctt tcacaatcac tggggacaac actaaatgga atgaaaatca aaatcctcga 960 atgttcctgg cgatgattac atatatcacc agaaatcaac ccgagtggtt tagaaacatt 1020 ctgagcatgg cacccataat gttctcaaac aaaatggcaa gactaggaaa agggtacatg 1080 ttcgagagta aaagaatgaa gattcgaaca caaataccag cagaaatgct agcaagcatt 1140 gatctaaagt atttcaatga atcaacaaag aaaaaaattg aaaaaataag gcctctttta 1200 atggatggca cagcatcact gagtcctggg atgatgatgg gcatgttcaa catgctaagt 1260 acggtcttgg gagtctcgat actgaatctt ggacaaaaga aatacaccaa gacaacatac 1320 tggtgggatg ggctccaatc atctgacgat tttgctctca tagtgaatgc accaaaccat 1380 gaaggaatac aagcaggagt ggacagattc tacaggacct gcaagttagt gggaatcaac 1440 atgagcaaaa agaaatccta tataaataag acagggacat ttgaattcac aagctttttt 1500 tatcgctatg gatttgtggc taattttagc atggagctac ccagctttgg agtgtctgga 1560 gtaaatgaat cagctgacat gagtattgga gtaacagtaa taaagaacaa catgataaac 1620 aatgaccttg gacctgcaac ggctcagatg gctcttcaat tattcatcaa agactacaga 1680 tacacatata ggtgtcatag gggagacaca caaattcaga cgagaagatc atttgagttg 1740 aagaagctat gggatcaaac ccaatcaaag gtagggctat tagtatcaga tggaggacca 1800 aacttataca acatacggaa tcttcacatt cctgaagtct gcttaaaatg ggagctaatg 1860 gatgatgatt atcggggaag actttgtaat cccctgaatc cctttgtgag tcataaggag 1920 attgattctg taaacaatgc tgtggtaatg ccagcccatg gcccagccaa aagcatggaa 1980 tatgatgccg ttgctactac acattcctgg attcccaaga ggaatcgttc tattctcaac 2040 acaagccaaa ggggaattct tgaggatgaa cagatgtacc agaagtgttg caatttattc 2100 gagaaatttt tccctagcag ttcatatagg agaccggttg gaatttctag catggtggag 2160 gccatggtgt ctagggcccg gattgatgcc agagtcgact ttgagtctgg acggatcaag 2220 aaagaagagt tctctgagat catgaagatc tgttccacca ttgaagaact cagacggcaa 2280 aaataatgaa tttaacttgt ccttcatgaa aaaatg 2316 // ID MT167240; SV 1; linear; viral cRNA; STD; VRL; 2208 BP. XX AC MT167240; XX PR Project:PRJNA37813; XX DT 17-MAR-2020 (Rel. 144, Created) DT 17-MAR-2020 (Rel. 144, Last updated, Version 1) XX DE Influenza A virus (A/Arkansas/02/2020(H1N1)) segment 3 polymerase PA (PA) DE and PA-X protein (PA-X) genes, complete cds. XX KW . XX OS Influenza A virus OC Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Insthoviricetes; OC Articulavirales; Orthomyxoviridae; Alphainfluenzavirus. XX RN [1] RP 1-2208 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT "Influenza Sequencing Activity group"; RL Unpublished. XX RN [2] RP 1-2208 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT ; RL Submitted (09-MAR-2020) to the INSDC. RL WHO Collaborating Center for Surveillance, Epidemiology and Control of RL Influenza, Influenza Division, Centers for Disease Control and Prevention, RL 1600 Clifton Road, N.E., Atlanta, GA 30333, USA XX DR MD5; e1aedb06df5632f44628a610b5fce1ed. XX CC ##FluData-START## CC EPI_ISOLATE_ID :: EPI_ISL_409490 CC NAME :: A/Arkansas/02/2020 CC TYPE :: H1N1 CC Segment_name :: PA CC HOST_AGE :: 32 CC HOST_GENDER :: M CC PASSAGE :: Original CC LOCATION :: United States / Arkansas CC COLLECT_DATE :: 05-Jan-2020 CC Lineage :: A(H1N1)pdm09 CC SPECIMEN_ID :: 1933800000-119 ORIGINAL CC SENDER_LAB :: Arkansas Department of Health CC SEQLAB_SAMPLE_ID :: 3026054563 CC EPI_SEQUENCE_ID :: EPI1686654 CC ##FluData-END## XX FH Key Location/Qualifiers FH FT source 1..2208 FT /organism="Influenza A virus" FT /segment="3" FT /host="Homo sapiens" FT /strain="A/Arkansas/02/2020" FT /serotype="H1N1" FT /mol_type="viral cRNA" FT /country="USA:Arkansas" FT /collection_date="05-Jan-2020" FT /db_xref="taxon:11320" FT gene 13..2163 FT /gene="PA" FT CDS 13..2163 FT /codon_start=1 FT /gene="PA" FT /product="polymerase PA" FT /protein_id="QIJ23747.1" FT /translation="MEDFVRQCFNPMVVELAEKAMKEYGEDPKIETNKFAAICTHLEVC FT FMYSDFHFIDERGESIIVESGDPNALLKHRFEIIEGRDRIMAWTVVNSICNTTGIEKPK FT FLPDLYDYKENRFIEIGVTRREVHIYYLEKANKIKSEKTHIHIFSFTGEEMATKADYTL FT DEESRARIKTRLFTIRQEMASRSLWDSFRQSERGEETIEEKFEITGTMRKLADQSLPPN FT FSSLENFRAYVDRFEPNGCIEGKLSQMSKEVNAKIEPFLRTTPRPLRLPDGPLCHQRSK FT FLLMDALKLSIEDPSHEGEGIPLYDAIKCMKTFFGWKEPKIVKPHEKGVNPNYLMAWKQ FT VLAELQDIENEEKIPRTKNMKKTSQLKWALGENMAPEKVDFDDCKDVGDLKQYDSDEPE FT LRSLASWVQNEFNKACELTDSSWIELDEIGEDVAPIEYIASMRRNYFTAEVSHCRATEY FT IMKGVYINTALLNASCAAMDDFQLIPMISKCRTKEGRRKTNLYGFIIKGRSHLRNDTDV FT VNFVSMEFSLTDPRLEPHKWEKYCVLEIGDMLLRTAIGQVSRPMFLYVRTNGTSKIKMK FT WGMEMRRCLLQSLQQIESMIEAESSVKEKDMTKEFFENKSETWPIGESPRGVEEGSIGK FT VCRTLLAKSVFNSLYASPQLEGFSAESRKLLLIVQALRDNLEPGTFDLGGLYEAIEECL FT INDPWVLLNASWFNSFLTHALK" FT gene 13..712 FT /gene="PA-X" FT CDS join(13..582,584..712) FT /codon_start=1 FT /ribosomal_slippage FT /gene="PA-X" FT /product="PA-X protein" FT /protein_id="QIJ23748.1" FT /translation="MEDFVRQCFNPMVVELAEKAMKEYGEDPKIETNKFAAICTHLEVC FT FMYSDFHFIDERGESIIVESGDPNALLKHRFEIIEGRDRIMAWTVVNSICNTTGIEKPK FT FLPDLYDYKENRFIEIGVTRREVHIYYLEKANKIKSEKTHIHIFSFTGEEMATKADYTL FT DEESRARIKTRLFTIRQEMASRSLWDSFVSPKEAKKQLKKSLRLQELCASLPTKVSHQT FT SPALKTSEPM" XX SQ Sequence 2208 BP; 746 A; 423 C; 514 G; 525 T; 0 other; tactgatcca aaatggaaga ctttgttcga caatgcttca atccaatggt cgtcgagctt 60 gcggaaaagg caatgaaaga atatggggaa gaccccaaaa tcgaaactaa taaatttgct 120 gcaatttgca cacatttgga agtttgtttc atgtattcgg atttccattt cattgatgaa 180 cggggtgaat caataattgt agaatctggt gacccaaatg cactattgaa gcaccgattt 240 gagataattg aaggaagaga ccgaatcatg gcctggacag tggtgaacag tatatgtaac 300 acaacaggga tagagaagcc taaatttctt cctgatttgt atgattacaa agagaaccgg 360 ttcattgaaa ttggagtaac acggagagaa gtccacatat attacctaga gaaagccaac 420 aaaataaaat ctgagaagac acacattcac atcttttcat tcactggaga ggagatggcc 480 accaaagcgg actacaccct tgacgaagag agcagagcaa gaatcaaaac taggcttttc 540 actataagac aagaaatggc cagtaggagt ctatgggatt cctttcgtca gtccgaaaga 600 ggcgaagaaa caattgaaga aaagtttgag attacaggaa ctatgcgcaa gcttgccgac 660 caaagtctcc caccaaactt ctccagcctt gaaaacttca gagcctatgt agatagattc 720 gagccgaacg gctgcattga gggcaagctt tcccaaatgt caaaagaagt gaacgccaaa 780 attgaaccat tcttgaggac gacaccacgc cccctcagat tacctgatgg acctctttgc 840 catcagcggt caaagttcct gctgatggat gctctgaaat taagcattga agacccgagt 900 cacgaggggg aaggaatacc actatatgat gcaatcaaat gcatgaagac attctttggc 960 tggaaagagc ctaaaatagt caaaccacat gagaaaggcg taaatcccaa ttacctcatg 1020 gcttggaagc aggtgctagc agagctacag gacattgaaa atgaagagaa aatcccaaga 1080 acaaagaaca tgaagaaaac aagccaattg aagtgggcac tcggtgaaaa tatggcacca 1140 gaaaaagtgg actttgatga ctgtaaagat gttggagacc ttaaacagta tgacagtgat 1200 gagccagagc tcagatctct agcaagctgg gtccaaaatg aattcaataa ggcatgtgaa 1260 ttgactgatt caagctggat agaacttgat gaaataggag aagatgttgc cccgattgaa 1320 tatatagcaa gcatgaggag gaactatttt acagcagaag tgtcccactg cagggctact 1380 gaatacataa tgaagggagt gtacataaat acggccttgc tcaatgcatc ctgtgcagcc 1440 atggatgact ttcagctgat tccaatgata agcaaatgta ggaccaaaga aggaagacgg 1500 aaaacaaacc tgtatgggtt cattataaaa ggaaggtctc atttgagaaa tgatactgat 1560 gtagtgaatt ttgtaagtat ggagttctca ctcactgatc caagactgga accacacaaa 1620 tgggaaaaat actgtgttct tgaaatagga gacatgctat tgaggactgc aataggccaa 1680 gtgtcgaggc ccatgttcct atatgtaaga accaatggaa cctccaagat caagatgaaa 1740 tggggcatgg aaatgaggcg ctgccttctt caatctcttc agcagattga gagcatgatt 1800 gaagccgagt cttctgtcaa agagaaagac atgaccaagg aattctttga aaacaaatcg 1860 gaaacatggc caatcggaga gtcacccagg ggagtggagg aaggctctat tggaaaagtg 1920 tgcagaacct tactggcaaa atctgtgttc aacagtctat atgcttctcc acaacttgag 1980 gggttttcgg ctgaatcaag aaaattgctt ctcattgttc aggcacttag ggacaacctg 2040 gaacctggaa cctttgatct tggggggcta tatgaagcaa tcgaggagtg cttgattaat 2100 gatccctggg ttttgcttaa tgcatcttgg ttcaactcct tcctcacaca tgcactgaag 2160 tagttgtagc aatgctacta tttgctatcc atattgtcca aaaaagta 2208 // ID MT167241; SV 1; linear; viral cRNA; STD; VRL; 1752 BP. XX AC MT167241; XX PR Project:PRJNA37813; XX DT 17-MAR-2020 (Rel. 144, Created) DT 17-MAR-2020 (Rel. 144, Last updated, Version 1) XX DE Influenza A virus (A/Arkansas/02/2020(H1N1)) segment 4 hemagglutinin (HA) DE gene, complete cds. XX KW . XX OS Influenza A virus OC Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Insthoviricetes; OC Articulavirales; Orthomyxoviridae; Alphainfluenzavirus. XX RN [1] RP 1-1752 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT "Influenza Sequencing Activity group"; RL Unpublished. XX RN [2] RP 1-1752 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT ; RL Submitted (09-MAR-2020) to the INSDC. RL WHO Collaborating Center for Surveillance, Epidemiology and Control of RL Influenza, Influenza Division, Centers for Disease Control and Prevention, RL 1600 Clifton Road, N.E., Atlanta, GA 30333, USA XX DR MD5; a51f632e7fc9cbd6afc6ab80ad42adbf. XX CC ##FluData-START## CC EPI_ISOLATE_ID :: EPI_ISL_409490 CC NAME :: A/Arkansas/02/2020 CC TYPE :: H1N1 CC Segment_name :: HA CC HOST_AGE :: 32 CC HOST_GENDER :: M CC PASSAGE :: Original CC LOCATION :: United States / Arkansas CC COLLECT_DATE :: 05-Jan-2020 CC Lineage :: A(H1N1)pdm09 CC SPECIMEN_ID :: 1933800000-119 ORIGINAL CC SENDER_LAB :: Arkansas Department of Health CC SEQLAB_SAMPLE_ID :: 3026054563 CC EPI_SEQUENCE_ID :: EPI1686658 CC ##FluData-END## XX FH Key Location/Qualifiers FH FT source 1..1752 FT /organism="Influenza A virus" FT /segment="4" FT /host="Homo sapiens" FT /strain="A/Arkansas/02/2020" FT /serotype="H1N1" FT /mol_type="viral cRNA" FT /country="USA:Arkansas" FT /collection_date="05-Jan-2020" FT /db_xref="taxon:11320" FT gene 21..1721 FT /gene="HA" FT CDS 21..1721 FT /codon_start=1 FT /gene="HA" FT /product="hemagglutinin" FT /function="receptor binding and fusion protein" FT /protein_id="QIJ23749.1" FT /translation="MKAILVVLLYTFTTANADTLCIGYHANNSTDTVDTVLEKNVTVTH FT SVNLLEDKHNGKLCKLRGVAPLHLGKCNIAGWILGNPECDSLSTARSWSYIVETSNSDN FT GTCYPGDFINYEELREQLSSVSSLERFEIFPKANSWPNHDSNKGVTAACPHAGAKSFYK FT NLIWLVKKGNSYPKINQTYINDKGKEVLVLWGIHHPPTTADQQSLYQNADAYVFVGTSR FT YSKKFKPEIATRPKVRDQEGRMNYYWTLVEPGDKITFEATGNLVVPRYAFTMERNAGSG FT IIISDTPVHDCNTTCQTPEGAINTSLPFQNVHPITIGTCPKYVKSTKLRLATGLRNVPS FT IQSRGLFGAIAGFIEGGWTGMVDGWYGYHHQNEQGSGYAADLKSTQNAIDKITNKVNSV FT IEKMNTQFTAVGKEFNHLEKRMENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSN FT VKNLYEKVRNQLKNNAKEIGNGCFEFYHKCDNTCMESVKNGTYDYPKYSEEAKLSREKI FT DGVKLDSTRIYQILAIYSTVASSLVLVVSLGAISFWMCSNGSLQCRICI" FT sig_peptide 21..71 FT /gene="HA" FT mat_peptide 72..1052 FT /gene="HA" FT /product="HA1" FT mat_peptide 1053..1718 FT /gene="HA" FT /product="HA2" XX SQ Sequence 1752 BP; 630 A; 333 C; 381 G; 408 T; 0 other; ggaaaacaaa agcaacaaaa atgaaggcaa tactagtagt tctgctgtat acatttacaa 60 ccgcaaacgc agacacatta tgtataggtt atcatgcgaa caattcaaca gacactgtag 120 atacagtact agaaaagaat gtaacagtaa cacactctgt taatcttctg gaagacaagc 180 ataacggaaa actatgcaaa ctaagagggg tagccccatt gcatttgggt aaatgcaaca 240 ttgctggctg gatcctggga aatccagagt gtgactcact ctccacagca agatcatggt 300 cctacattgt ggaaacgtct aattcagaca atggaacatg ttacccagga gatttcatca 360 attatgagga gctaagagag caattgagct cagtgtcatc acttgaaagg tttgaaatat 420 tccccaaggc aaattcatgg cctaatcatg actcgaacaa aggtgtaacg gcagcatgtc 480 ctcacgctgg agcaaaaagc ttctacaaaa acttgatatg gctggttaaa aaaggaaatt 540 catacccaaa gatcaaccaa acctacatta atgataaagg gaaagaagtc ctcgtgctgt 600 ggggcattca ccatccacct actactgctg accaacaaag tctctatcag aatgcagatg 660 catatgtttt tgtggggaca tcaagataca gcaagaagtt caagccggaa atagcaacaa 720 gacccaaagt gagggatcaa gaagggagaa tgaactatta ctggacacta gtagagccgg 780 gagacaaaat aacattcgaa gcaactggaa atctagtggt accgagatat gcattcacaa 840 tggaaagaaa tgctggatct ggtattatca tttcagatac accagtccac gactgcaata 900 caacttgtca gacccccgag ggtgctataa acaccagtct cccatttcag aatgtacatc 960 cgatcacaat tgggacatgt ccaaagtatg taaaaagcac aaaattgaga ctggccacag 1020 gattgaggaa tgtcccgtct attcaatcta gaggcctatt cggggccatt gccggcttca 1080 ttgaaggggg gtggacaggg atggtagatg gatggtatgg ttatcaccat caaaatgaac 1140 aggggtcagg atatgcagcc gatctgaaga gcacacaaaa tgccattgat aagattacta 1200 acaaagtaaa ttctgttatt gaaaagatga atacacagtt cacagcagtg ggtaaagagt 1260 tcaaccacct tgaaaaaaga atggaaaatc taaacaaaaa agttgatgat ggtttcctgg 1320 acatttggac ttacaatgcc gaactgttgg ttctactgga aaatgaaaga actttggact 1380 atcacgattc aaatgtgaag aacttgtatg aaaaagtaag aaaccagtta aaaaacaatg 1440 ccaaagaaat tggaaatggc tgctttgaat tttaccacaa atgcgataac acatgcatgg 1500 aaagtgtcaa gaatgggact tatgactacc caaaatactc agaagaagca aaactaagca 1560 gagaaaaaat agatggagta aagctggact caacaaggat ctaccagatt ttggcgatct 1620 attcaactgt cgccagttca ttggtactgg tagtctccct gggggcaatc agcttctgga 1680 tgtgctctaa tgggtctcta cagtgtagaa tatgtattta acattaggat ttcagaatca 1740 tgagaaaaac ac 1752 // ID MT167242; SV 1; linear; viral cRNA; STD; VRL; 1540 BP. XX AC MT167242; XX PR Project:PRJNA37813; XX DT 17-MAR-2020 (Rel. 144, Created) DT 17-MAR-2020 (Rel. 144, Last updated, Version 1) XX DE Influenza A virus (A/Arkansas/02/2020(H1N1)) segment 5 nucleocapsid protein DE (NP) gene, complete cds. XX KW . XX OS Influenza A virus OC Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Insthoviricetes; OC Articulavirales; Orthomyxoviridae; Alphainfluenzavirus. XX RN [1] RP 1-1540 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT "Influenza Sequencing Activity group"; RL Unpublished. XX RN [2] RP 1-1540 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT ; RL Submitted (09-MAR-2020) to the INSDC. RL WHO Collaborating Center for Surveillance, Epidemiology and Control of RL Influenza, Influenza Division, Centers for Disease Control and Prevention, RL 1600 Clifton Road, N.E., Atlanta, GA 30333, USA XX DR MD5; 5c38d2b9f71aa27f7d98b8e2b21e8c4a. XX CC ##FluData-START## CC EPI_ISOLATE_ID :: EPI_ISL_409490 CC NAME :: A/Arkansas/02/2020 CC TYPE :: H1N1 CC Segment_name :: NP CC HOST_AGE :: 32 CC HOST_GENDER :: M CC PASSAGE :: Original CC LOCATION :: United States / Arkansas CC COLLECT_DATE :: 05-Jan-2020 CC Lineage :: A(H1N1)pdm09 CC SPECIMEN_ID :: 1933800000-119 ORIGINAL CC SENDER_LAB :: Arkansas Department of Health CC SEQLAB_SAMPLE_ID :: 3026054563 CC EPI_SEQUENCE_ID :: EPI1686651 CC ##FluData-END## XX FH Key Location/Qualifiers FH FT source 1..1540 FT /organism="Influenza A virus" FT /segment="5" FT /host="Homo sapiens" FT /strain="A/Arkansas/02/2020" FT /serotype="H1N1" FT /mol_type="viral cRNA" FT /country="USA:Arkansas" FT /collection_date="05-Jan-2020" FT /db_xref="taxon:11320" FT gene 34..1530 FT /gene="NP" FT CDS 34..1530 FT /codon_start=1 FT /gene="NP" FT /product="nucleocapsid protein" FT /protein_id="QIJ23750.1" FT /translation="MASQGTKRSYEQMETGGERQDTTEIRASVGRMIGGIGRFYIQMCT FT ELKLSDYDGRLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRIDGKW FT TRELILYDKEEIRRVWRQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRM FT CSLMQGSTLPRRSGAAGAAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTRVAYERM FT CNILKGKFQTAAQRAMMDQVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVY FT GLAVASGHDFEREGYSLVGIDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFED FT LRVSSFIRGKKVIPRGKLSTRGVQIASNENVETMDSNTLELRSRYWAIRTRSGGNTNQQ FT KASAGQISVQPTFSVQRNLPFERATVMAAFSGNNEGRTSDMRTEVIRMMESAKPEDLSF FT QGRGVFELSDEKATNPIVPSFDMSNEGSYFFGDNAEEYDN" XX SQ Sequence 1540 BP; 521 A; 296 C; 398 G; 325 T; 0 other; gtagataatc actcaatgag tgacatcgaa gccatggcgt ctcaaggcac caaacgatca 60 tatgaacaaa tggagactgg tggggagcgc caggatacca cagaaatcag agcatctgtt 120 ggaagaatga ttggtggaat cgggagattc tacatccaaa tgtgcactga attaaaactc 180 agtgattatg atggacgact aatccagaat agcataacaa tagagaggat ggtgctttct 240 gcttttgatg agagaagaaa taaataccta gaagagcatc cgagtgctgg gaaggaccct 300 aagaaaacag gaggacccat ctatagaaga atagacggaa aatggacgag agaactcatc 360 ctttatgaca aagaagaaat aaggagagtt tggcgccaag caaacaatgg cgaagatgca 420 acagcaggtc ttactcatat catgatttgg cattccaatc tgaatgatgc cacataccag 480 aggacaagag cacttgttcg cactgggatg gatcccagaa tgtgctctct aatgcaaggt 540 tcaacacttc ccaggaggtc tggtgccgca ggtgctgcag taaaaggagt tggaacaata 600 gctatggagt taatcagaat gataaaacgt ggaatcaatg accgaaattt ctggaggggt 660 gaaaatggac gaaggacaag agttgcttat gaaagaatgt gcaatatcct caaaggaaaa 720 tttcaaacag ctgcccagag ggcaatgatg gatcaagtaa gagaaagtcg aaacccagga 780 aacgcagaga ttgaagacct cattttcctg gcacggtcag cactcattct gagaggatca 840 gttgcacata aatcctgtct gcctgcttgt gtgtatgggc ttgcagtagc aagtggccat 900 gactttgaaa gggaagggta ctcactggtc gggatagacc cattcaaatt actccaaaac 960 agtcaagtgg tcagtctgat gagaccaaat gaaaatccag ctcacaagag tcaattggta 1020 tggatggcat gccactctgc tgcatttgaa gatttaagag tatcaagttt cataagagga 1080 aagaaagtga tcccaagagg aaagctttcc acaagagggg ttcagattgc ttcaaatgag 1140 aatgtggaaa ccatggactc caataccctg gaactaagaa gcagatactg ggccataaga 1200 accaggagtg gaggaaatac caatcaacag aaggcatccg caggccagat cagtgtgcag 1260 cctacattct cagtgcagcg aaatctccct ttcgaaagag caaccgttat ggcagcattc 1320 agcgggaaca atgaaggacg gacatccgac atgcgaacag aagttataag aatgatggaa 1380 agtgcaaagc cagaggattt gtccttccag gggcggggag tcttcgagct ctcggacgaa 1440 aaggcaacga acccgatcgt gccttccttt gacatgagta atgaagggtc ttatttcttc 1500 ggagacaatg cagaggagta tgacaattga agaaaaatac 1540 // ID MT167243; SV 1; linear; viral cRNA; STD; VRL; 1433 BP. XX AC MT167243; XX PR Project:PRJNA37813; XX DT 17-MAR-2020 (Rel. 144, Created) DT 17-MAR-2020 (Rel. 144, Last updated, Version 1) XX DE Influenza A virus (A/Arkansas/02/2020(H1N1)) segment 6 neuraminidase (NA) DE gene, complete cds. XX KW . XX OS Influenza A virus OC Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Insthoviricetes; OC Articulavirales; Orthomyxoviridae; Alphainfluenzavirus. XX RN [1] RP 1-1433 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT "Influenza Sequencing Activity group"; RL Unpublished. XX RN [2] RP 1-1433 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT ; RL Submitted (09-MAR-2020) to the INSDC. RL WHO Collaborating Center for Surveillance, Epidemiology and Control of RL Influenza, Influenza Division, Centers for Disease Control and Prevention, RL 1600 Clifton Road, N.E., Atlanta, GA 30333, USA XX DR MD5; 23dfcd7c6bec340d362c36609f2b3581. XX CC ##FluData-START## CC EPI_ISOLATE_ID :: EPI_ISL_409490 CC NAME :: A/Arkansas/02/2020 CC TYPE :: H1N1 CC Segment_name :: NA CC HOST_AGE :: 32 CC HOST_GENDER :: M CC PASSAGE :: Original CC LOCATION :: United States / Arkansas CC COLLECT_DATE :: 05-Jan-2020 CC Lineage :: A(H1N1)pdm09 CC SPECIMEN_ID :: 1933800000-119 ORIGINAL CC SENDER_LAB :: Arkansas Department of Health CC SEQLAB_SAMPLE_ID :: 3026054563 CC EPI_SEQUENCE_ID :: EPI1686657 CC ##FluData-END## XX FH Key Location/Qualifiers FH FT source 1..1433 FT /organism="Influenza A virus" FT /segment="6" FT /host="Homo sapiens" FT /strain="A/Arkansas/02/2020" FT /serotype="H1N1" FT /mol_type="viral cRNA" FT /country="USA:Arkansas" FT /collection_date="05-Jan-2020" FT /db_xref="taxon:11320" FT gene 9..1418 FT /gene="NA" FT CDS 9..1418 FT /codon_start=1 FT /gene="NA" FT /product="neuraminidase" FT /protein_id="QIJ23751.1" FT /translation="MNPNQKIITIGSICMTIGMANLILQIGNIISIWVSHSIQIGNQSQ FT IETCNQSVITYENNTWVNQTYVNISNTNFAARQSVASVKLAGNSSLCPVSGWAIYSKDN FT SVRIGSKGDVFVIREPFISCSPLECRTFFLTQGALLNDKHSNGTIKDRSPYRTLMSCPI FT GEVPSPYNSRFESVAWSASACHDGINWLTIGISGPDSGAVAVLKYNGIITDTIKSWRNN FT ILRTQESECACVNGSCFTIMTDGPSDGQASYKIFRIEKGKIIKSVEMKAPNYHYEECSC FT YPDSSEITCVCRDNWHGSNRPWVSFNQNLEYQIGYICSGVLGDNPRPNDKTGSCGPVSS FT NGANGVKGFSFKYGNGVWIGRTKSISSRKGFEMIWDPNGWTGTDNKFSIKQDIVGINEW FT SGYSGSFVQHPELTGLDCIRPCFWVELIRGRPEENTIWTSGSSISFCGVDSDTVGWSWP FT DGAELPFTIDK" XX SQ Sequence 1433 BP; 459 A; 263 C; 337 G; 374 T; 0 other; agtttaaaat gaatccaaac caaaagataa taaccattgg ttcgatctgt atgacaattg 60 gaatggctaa cttaatatta caaattggaa acataatctc aatatgggtt agccactcaa 120 ttcaaattgg aaatcaaagc cagattgaaa catgcaatca aagcgtcatt acttatgaga 180 acaacacttg ggtaaatcag acatatgtta acatcagcaa caccaacttt gctgctagac 240 agtcagtggc ttccgtgaaa ttagcgggca attcctctct ctgccctgtt agtggatggg 300 ctatatacag taaagacaac agtgtaagaa tcggctccaa gggggatgtg tttgtcataa 360 gggaaccatt catatcatgc tctcccttgg aatgcagaac cttcttcttg actcaagggg 420 ctttgctaaa tgacaaacat tccaatggaa ccattaaaga caggagccca tatcgaaccc 480 taatgagctg tcctattggt gaagttccct ctccatacaa ctcaagattt gagtcagtcg 540 cttggtcagc gagtgcttgt catgatggca tcaattggct aacaattgga atttctggcc 600 cagacagtgg ggcagtggct gtgttaaaat acaatggcat aataacagac actatcaaga 660 gttggaggaa caatatattg agaacacaag agtctgaatg tgcatgtgta aatggttctt 720 gctttaccat aatgaccgat ggaccaagtg atggacaggc ctcatacaaa atcttcagaa 780 tagaaaaggg aaagataatc aaatcagttg aaatgaaagc ccctaattat cactatgagg 840 aatgctcctg ttaccctgat tctagtgaaa tcacatgtgt gtgcagggat aactggcatg 900 gctcgaatcg accgtgggtg tctttcaacc agaatctgga atatcagata ggatacatat 960 gcagtggggt tctcggagac aatccacgcc ctaatgataa gacaggcagt tgcggtccag 1020 tatcgtctaa tggagcaaat ggagtaaaag gattttcatt caaatacggc aatggtgttt 1080 ggatagggag aactaagagc attagttcaa ggaaaggttt tgagatgatt tgggatccga 1140 atggatggac tgggactgac aataaattct caataaagca agatatcgta ggaataaatg 1200 agtggtcagg gtatagcggg agttttgttc agcatccaga actaacaggg ctggattgta 1260 taagaccttg cttctgggtt gaactaataa gaggacgacc cgaagagaac acaatctgga 1320 ctagcgggag cagcatatcc ttttgtggtg tagacagtga cactgtgggt tggtcttggc 1380 cagacggtgc tgagttgcca tttaccattg acaagtaatt tgttcaaaaa act 1433 // ID MT167244; SV 1; linear; viral cRNA; STD; VRL; 1002 BP. XX AC MT167244; XX PR Project:PRJNA37813; XX DT 17-MAR-2020 (Rel. 144, Created) DT 17-MAR-2020 (Rel. 144, Last updated, Version 1) XX DE Influenza A virus (A/Arkansas/02/2020(H1N1)) segment 7 matrix protein 2 DE (M2) and matrix protein 1 (M1) genes, complete cds. XX KW . XX OS Influenza A virus OC Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Insthoviricetes; OC Articulavirales; Orthomyxoviridae; Alphainfluenzavirus. XX RN [1] RP 1-1002 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT "Influenza Sequencing Activity group"; RL Unpublished. XX RN [2] RP 1-1002 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT ; RL Submitted (09-MAR-2020) to the INSDC. RL WHO Collaborating Center for Surveillance, Epidemiology and Control of RL Influenza, Influenza Division, Centers for Disease Control and Prevention, RL 1600 Clifton Road, N.E., Atlanta, GA 30333, USA XX DR MD5; 576468fa94375ffcda24eb03ab3789a7. XX CC ##FluData-START## CC EPI_ISOLATE_ID :: EPI_ISL_409490 CC NAME :: A/Arkansas/02/2020 CC TYPE :: H1N1 CC Segment_name :: M CC HOST_AGE :: 32 CC HOST_GENDER :: M CC PASSAGE :: Original CC LOCATION :: United States / Arkansas CC COLLECT_DATE :: 05-Jan-2020 CC Lineage :: A(H1N1)pdm09 CC SPECIMEN_ID :: 1933800000-119 ORIGINAL CC SENDER_LAB :: Arkansas Department of Health CC SEQLAB_SAMPLE_ID :: 3026054563 CC EPI_SEQUENCE_ID :: EPI1686653 CC ##FluData-END## XX FH Key Location/Qualifiers FH FT source 1..1002 FT /organism="Influenza A virus" FT /segment="7" FT /host="Homo sapiens" FT /strain="A/Arkansas/02/2020" FT /serotype="H1N1" FT /mol_type="viral cRNA" FT /country="USA:Arkansas" FT /collection_date="05-Jan-2020" FT /db_xref="taxon:11320" FT gene 14..995 FT /gene="M2" FT CDS join(14..39,728..995) FT /codon_start=1 FT /gene="M2" FT /product="matrix protein 2" FT /protein_id="QIJ23753.1" FT /translation="MSLLTEVETPTRSGWECRCSGSSDPLVIAANIIGILHLILWITDR FT LFFKCIYRRFKYGLKRGPSTEGVPESMREEYQQEQQSAVDVDDGHFVNIELE" FT gene 14..772 FT /gene="M1" FT CDS 14..772 FT /codon_start=1 FT /gene="M1" FT /product="matrix protein 1" FT /protein_id="QIJ23752.1" FT /translation="MSLLTEVETYVLSIIPSGPLKAEIAQRLESVFAGKNTDLEALMEW FT LKTRPILSPLTKGILGFVFTLTVPSERGLQRRRFIQNALNGNGDPNNMDRAVKLYKKLK FT REITFHGAKEVSLSYSTGALASCMGLIYNRMGTVTTEAAFGLVCATCEQIADSQHRSHR FT QMATTTNPLIRHENRMVLASTTAKAMEQVAGSSEQAAEAMEVANKTRQMVHAMRTIGTH FT PSSSAGLRDDLLENLQAYQKRMGVQMQRFK" XX SQ Sequence 1002 BP; 297 A; 209 C; 257 G; 239 T; 0 other; tagatgttta aagatgagtc ttctaaccga ggtcgaaacg tacgttcttt ctatcatccc 60 atcaggcccc ctcaaagccg agatcgcaca gagactggaa agtgtctttg caggaaagaa 120 cacagatctt gaggctctca tggaatggct aaagacaaga ccaatcttgt cacctctgac 180 taagggaatt ttaggatttg tgttcacgct caccgtgccc agtgagcgag gactgcagcg 240 tagacgcttt atccaaaatg ccctaaatgg aaatggggac ccgaacaaca tggatagagc 300 agttaaacta tacaagaagc tcaaaagaga aataacgttc catggggcca aggaggtgtc 360 actaagctat tcaactggtg cacttgcaag ttgcatgggc ctcatataca acaggatggg 420 aacagtgacc acagaagctg ctttcggtct agtttgtgcc acttgtgaac agattgctga 480 ttcacagcat cggtctcaca gacaaatggc tactaccaca aatccactaa tcaggcatga 540 aaacagaatg gtgttggcta gcactacagc aaaggctatg gaacaggtgg ctggatcgag 600 tgaacaggca gcggaggcca tggaggttgc taataagact aggcagatgg tgcatgcaat 660 gagaactatt gggactcatc ctagctccag tgctggtctg agagatgacc ttcttgaaaa 720 tttgcaggcc taccagaagc ggatgggagt gcagatgcag cggttcaagt gatcctctcg 780 tcattgcagc aaacatcatt gggatcttgc acctgatatt gtggattact gatcgtcttt 840 ttttcaaatg catttatcgt cgctttaaat acggtctgaa aagagggcct tctacggaag 900 gagtgcctga gtccatgagg gaagaatatc aacaggagca gcagagtgct gtggatgttg 960 acgatggtca ttttgtcaac atagagctag agtaaaaaac ta 1002 // ID MT167245; SV 1; linear; viral cRNA; STD; VRL; 865 BP. XX AC MT167245; XX PR Project:PRJNA37813; XX DT 17-MAR-2020 (Rel. 144, Created) DT 17-MAR-2020 (Rel. 144, Last updated, Version 1) XX DE Influenza A virus (A/Arkansas/02/2020(H1N1)) segment 8 nuclear export DE protein (NEP) and nonstructural protein 1 (NS1) genes, complete cds. XX KW . XX OS Influenza A virus OC Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Insthoviricetes; OC Articulavirales; Orthomyxoviridae; Alphainfluenzavirus. XX RN [1] RP 1-865 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT "Influenza Sequencing Activity group"; RL Unpublished. XX RN [2] RP 1-865 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT ; RL Submitted (09-MAR-2020) to the INSDC. RL WHO Collaborating Center for Surveillance, Epidemiology and Control of RL Influenza, Influenza Division, Centers for Disease Control and Prevention, RL 1600 Clifton Road, N.E., Atlanta, GA 30333, USA XX DR MD5; 69a215dc31931ce3068cc08e48101325. XX CC ##FluData-START## CC EPI_ISOLATE_ID :: EPI_ISL_409490 CC NAME :: A/Arkansas/02/2020 CC TYPE :: H1N1 CC Segment_name :: NS CC HOST_AGE :: 32 CC HOST_GENDER :: M CC PASSAGE :: Original CC LOCATION :: United States / Arkansas CC COLLECT_DATE :: 05-Jan-2020 CC Lineage :: A(H1N1)pdm09 CC SPECIMEN_ID :: 1933800000-119 ORIGINAL CC SENDER_LAB :: Arkansas Department of Health CC SEQLAB_SAMPLE_ID :: 3026054563 CC EPI_SEQUENCE_ID :: EPI1686652 CC ##FluData-END## XX FH Key Location/Qualifiers FH FT source 1..865 FT /organism="Influenza A virus" FT /segment="8" FT /host="Homo sapiens" FT /strain="A/Arkansas/02/2020" FT /serotype="H1N1" FT /mol_type="viral cRNA" FT /country="USA:Arkansas" FT /collection_date="05-Jan-2020" FT /db_xref="taxon:11320" FT gene 15..852 FT /gene="NEP" FT /gene_synonym="NS2" FT CDS join(15..44,517..852) FT /codon_start=1 FT /gene="NEP" FT /gene_synonym="NS2" FT /product="nuclear export protein" FT /note="nonstructural protein 2" FT /protein_id="QIJ23755.1" FT /translation="MESNTMSSFQDILMRMSKMQLGSSSEDLSGMVTRFESLKIYRDSL FT GEAVMRMGDLHYLQSRNEKWREQLGQKFEEIRWLIEEIRQRLKTTENSFEQITFMQALQ FT LLLEVEQEIRAFSFQLI" FT gene 15..674 FT /gene="NS1" FT CDS 15..674 FT /codon_start=1 FT /gene="NS1" FT /product="nonstructural protein 1" FT /protein_id="QIJ23754.1" FT /translation="MESNTMSSFQVDCFLWHIRKRFADNGLGDAPFLDRLRRDQKSLKG FT RGNTLGLDVKTATLVGKQIVEWILKEESSETLRMTIASVPTSRYISDMTLEEMSRDWFM FT LMPRQKMIGPLCVRLDQAVMDKNIVLEANFSVIFNRLETLILLRAFTEEGAIVGEISPL FT PSLPGHTYEDVKNAVGVLIGGLEWNGNTVRVSENIQRFAWRSCDENGRPSLPPEQK" XX SQ Sequence 865 BP; 278 A; 164 C; 208 G; 215 T; 0 other; gtgacaaaaa cataatggaa tccaacacca tgtcaagctt tcaggtagac tgttttcttt 60 ggcatattcg caagcgattt gcagacaatg gattgggtga tgccccattc cttgatcggc 120 tacgccgaga tcaaaagtcc ttaaaaggaa gaggcaacac ccttggcctc gacgtcaaaa 180 cagccactct tgttgggaaa caaattgtgg aatggatttt gaaagaggaa tccagcgaga 240 cacttagaat gacaattgca tctgtaccta cttcgcgtta catttctgac atgaccctcg 300 aggaaatgtc acgagactgg ttcatgctta tgcctaggca aaagatgata ggccctcttt 360 gcgtgcgatt ggaccaggcg gtcatggata agaacatagt actggaagca aacttcagtg 420 taatcttcaa ccgattagag accttgatac tactaagggc tttcactgag gagggagcaa 480 tagttggaga aatttcacca ttaccttctc ttccaggaca tacttatgag gatgtcaaaa 540 atgcagttgg ggtcctcatc ggaggacttg agtggaatgg taacacggtt cgagtctctg 600 aaaatataca gagattcgct tggagaagct gtgatgagaa tgggagacct tcactacctc 660 cagagcagaa atgagaagtg gcgggaacaa ttgggacaga aatttgagga aataaggtgg 720 ttaattgaag aaatacgaca gaggttgaaa acgacagaga atagtttcga acaaataaca 780 tttatgcaag ccttacaact actgcttgaa gtagagcaag agataagagc tttctcgttt 840 cagcttattt aatgataaaa aacac 865 // ID MT167246; SV 1; linear; viral cRNA; STD; VRL; 2316 BP. XX AC MT167246; XX PR Project:PRJNA37813; XX DT 17-MAR-2020 (Rel. 144, Created) DT 17-MAR-2020 (Rel. 144, Last updated, Version 1) XX DE Influenza A virus (A/Arkansas/02/2020(H1N1)) segment 1 polymerase PB2 (PB2) DE gene, complete cds. XX KW . XX OS Influenza A virus OC Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Insthoviricetes; OC Articulavirales; Orthomyxoviridae; Alphainfluenzavirus. XX RN [1] RP 1-2316 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT "Influenza Sequencing Activity group"; RL Unpublished. XX RN [2] RP 1-2316 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT ; RL Submitted (09-MAR-2020) to the INSDC. RL WHO Collaborating Center for Surveillance, Epidemiology and Control of RL Influenza, Influenza Division, Centers for Disease Control and Prevention, RL 1600 Clifton Road, N.E., Atlanta, GA 30333, USA XX DR MD5; b825c2f8bfbaa7ff287199dbed6f6188. XX CC ##FluData-START## CC EPI_ISOLATE_ID :: EPI_ISL_409758 CC NAME :: A/Arkansas/02/2020 CC TYPE :: H1N1 CC Segment_name :: PB2 CC HOST_AGE :: 32 CC HOST_GENDER :: M CC PASSAGE :: C1 (2020-01-23) CC LOCATION :: United States / Arkansas CC COLLECT_DATE :: 05-Jan-2020 CC Lineage :: A(H1N1)pdm09 CC RESIST_TO_OSELTAMIVIR :: Sensitive CC RESIST_TO_ZANAMVIR :: Sensitive CC SPECIMEN_ID :: 1933800000-119 ORIGINAL CC SENDER_LAB :: Arkansas Department of Health CC SEQLAB_SAMPLE_ID :: 3026054563 CC EPI_SEQUENCE_ID :: EPI1688860 CC ##FluData-END## XX FH Key Location/Qualifiers FH FT source 1..2316 FT /organism="Influenza A virus" FT /segment="1" FT /host="Homo sapiens" FT /strain="A/Arkansas/02/2020" FT /serotype="H1N1" FT /mol_type="viral cRNA" FT /country="USA:Arkansas" FT /collection_date="05-Jan-2020" FT /db_xref="taxon:11320" FT gene 16..2295 FT /gene="PB2" FT CDS 16..2295 FT /codon_start=1 FT /gene="PB2" FT /product="polymerase PB2" FT /protein_id="QIJ23756.1" FT /translation="MERIKELRDLMSQSRTREILTKTTVDHMAIIKKYTSGRQEKNPAL FT RMKWMMAMKYPITADKRIMDIIPERNEQGQTLWSKTNDAGSDRVMVSPLAVTWWNRNGP FT TTSTVHYPKVYKTYFEKVERLKHGTFGPVHFRNQVKIRRRVDTNPGHADLSAKEAQDVI FT MEVVFPNEVGARILTSESQLAITKEKKEELQNCKIAPLMVAYMLERELVRKTRFLPVAG FT GTGSVYIEVLHLTQGTCWEQMYTPGGEVRNDDVDQSLIIAARNIVRRAAVSADPLASLL FT EMCHSTQIGGVKMVDIIKQNPTEEQAVDICKAAIGLRISSSFSFGGFTFKRTSGSSVKK FT EEEMLTGNLQTLKLRVHEGYEEFTMVGRRATAILRKATRRLIQLIVSGRDEQSIAEAII FT VAMVFSQEDCMIKAVRGDLNFVNRANQRLNPMHQLLRHFQKDAKVLFQNWGIETIDNVM FT GMIGILPDMTPSTEMSLRGIRVSKMGVDEYSSTERVVVSIDRFLRVRDQRGNVLLSPEE FT VSETQGTEKLTITYSSSMMWEINGPESVLVNTYQWIIRNWEIVKIQWSQDPTMLYNKME FT FEPFQSLVPKAIRSRYSGFVRTLFQQMRDVLGTFDTVQIIKLLPFAAAPPEQSRMQFSS FT LTVNVRGSGLRILVRGNSPVFNYNKATKRLTVLGKDAGALTEDPDEGTSGVESAVLRGF FT LILGKEDKRYGPALSINELSNLAKGEKANVLIGQGDIVLVMKRKRDSSILTDSQTATKR FT IRMAIN" XX SQ Sequence 2316 BP; 796 A; 435 C; 584 G; 501 T; 0 other; tcaaatatat tcaatatgga gagaataaaa gagctgagag atctaatgtc acagtcccgc 60 actcgcgaga tactcactaa gaccactgtg gaccatatgg ccatcatcaa aaagtacaca 120 tcgggaaggc aagagaagaa ccccgcactc agaatgaagt ggatgatggc aatgaaatac 180 ccaattacgg cagacaagag aataatggac ataatcccag agaggaatga acaaggacag 240 accctctgga gcaaaacaaa cgatgctgga tcagaccgag tgatggtatc acctctggcc 300 gtaacatggt ggaatagaaa tggcccaaca acaagtacag ttcattaccc taaggtatat 360 aaaacttatt tcgaaaaggt cgaaaggttg aaacatggca ccttcggccc tgtccatttc 420 agaaatcaag tcaaaataag gaggagagtt gatacaaacc ctggccatgc agatctcagt 480 gccaaagaag cacaggatgt gattatggaa gttgttttcc caaatgaagt gggggcaaga 540 atactgacat cagagtcaca gctggcaata acaaaagaga agaaagaaga gctccagaat 600 tgtaaaattg ctcccttgat ggtggcgtac atgctagaaa gagaattggt ccgtaaaaca 660 aggtttctcc cggtagccgg tgggacaggc agtgtttata ttgaggtgtt acacttgacc 720 caagggacgt gctgggagca gatgtacact ccaggaggag aagtgagaaa tgatgatgtt 780 gaccaaagct tgattatcgc tgctagaaac atagtaagaa gagcagcagt gtcagcagac 840 ccattagcat ctctcttgga aatgtgccac agcacacaga ttgggggtgt gaagatggtg 900 gacatcatta aacagaatcc aactgaggag caagccgtag acatatgcaa ggcagcaata 960 gggttgagga tcagctcatc ttttagtttt ggtgggttca ctttcaaaag gacaagcgga 1020 tcatcagtca agaaagaaga agaaatgcta acgggcaacc tccaaacact gaaattaaga 1080 gtacatgaag ggtatgaaga attcacaatg gttgggagaa gagcaacagc tattctcaga 1140 aaggcaacca ggagattgat ccaattaata gtaagcggga gagacgagca gtcaatagct 1200 gaagcaataa ttgtggccat ggtattctca caagaggatt gcatgatcaa agcagttagg 1260 ggagatctga actttgtcaa tagggcaaac cagagactga atcccatgca ccaactcttg 1320 aggcatttcc aaaaagatgc aaaagtgctt ttccagaact ggggaattga aaccatcgac 1380 aatgtgatgg gaatgatcgg aatactgccc gacatgaccc caagcacgga gatgtcactg 1440 agaggaataa gagtcagcaa gatgggagta gatgaatact ccagcacgga gagagtggta 1500 gtgagtattg accgattttt gagggttaga gatcaaagag gaaacgtact attgtctccc 1560 gaagaggtca gtgaaacgca aggaactgag aagttgacaa taacttattc gtcatcaatg 1620 atgtgggaaa taaacggccc tgagtcagtg ctagtcaaca cttatcaatg gataatcaga 1680 aactgggaaa ttgtgaaaat tcaatggtca caagacccca caatgttata caacaaaatg 1740 gaatttgaac catttcagtc tcttgtccct aaggcaatca gaagccggta cagtggattc 1800 gtaaggacac tgttccagca aatgagggat gtgcttggga catttgacac tgtccaaata 1860 ataaaacttc tcccctttgc tgctgctcca ccagaacaga gcaggatgca attttcttca 1920 ttgactgtga atgtgagagg atcagggtta aggatactgg taagaggcaa ttctccagta 1980 ttcaattaca acaaggcaac caaacgactt acggttcttg gaaaggatgc aggtgcattg 2040 actgaagatc cagatgaagg cacatctggg gtggagtctg ctgtcctgag aggattcctc 2100 attttaggca aagaagacaa gagatatggc ccagcattaa gcatcaatga actgagcaat 2160 cttgcaaaag gagagaaagc taatgtgcta attgggcagg gggacatagt gttggtaatg 2220 aaacgaaaac gggactctag catacttact gacagccaga cagcgaccaa aagaattcgg 2280 atggccatca attagtgtcg aattgtttaa aaacga 2316 // ID MT167247; SV 1; linear; viral cRNA; STD; VRL; 2316 BP. XX AC MT167247; XX PR Project:PRJNA37813; XX DT 17-MAR-2020 (Rel. 144, Created) DT 17-MAR-2020 (Rel. 144, Last updated, Version 1) XX DE Influenza A virus (A/Arkansas/02/2020(H1N1)) segment 2 polymerase PB1 (PB1) DE gene, complete cds; and nonfunctional PB1-F2 protein (PB1-F2) gene, DE complete sequence. XX KW . XX OS Influenza A virus OC Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Insthoviricetes; OC Articulavirales; Orthomyxoviridae; Alphainfluenzavirus. XX RN [1] RP 1-2316 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT "Influenza Sequencing Activity group"; RL Unpublished. XX RN [2] RP 1-2316 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT ; RL Submitted (09-MAR-2020) to the INSDC. RL WHO Collaborating Center for Surveillance, Epidemiology and Control of RL Influenza, Influenza Division, Centers for Disease Control and Prevention, RL 1600 Clifton Road, N.E., Atlanta, GA 30333, USA XX DR MD5; f5d17456f260a98061a468357b3bf988. XX CC ##FluData-START## CC EPI_ISOLATE_ID :: EPI_ISL_409758 CC NAME :: A/Arkansas/02/2020 CC TYPE :: H1N1 CC Segment_name :: PB1 CC HOST_AGE :: 32 CC HOST_GENDER :: M CC PASSAGE :: C1 (2020-01-23) CC LOCATION :: United States / Arkansas CC COLLECT_DATE :: 05-Jan-2020 CC Lineage :: A(H1N1)pdm09 CC RESIST_TO_OSELTAMIVIR :: Sensitive CC RESIST_TO_ZANAMVIR :: Sensitive CC SPECIMEN_ID :: 1933800000-119 ORIGINAL CC SENDER_LAB :: Arkansas Department of Health CC SEQLAB_SAMPLE_ID :: 3026054563 CC EPI_SEQUENCE_ID :: EPI1688861 CC ##FluData-END## XX FH Key Location/Qualifiers FH FT source 1..2316 FT /organism="Influenza A virus" FT /segment="2" FT /host="Homo sapiens" FT /strain="A/Arkansas/02/2020" FT /serotype="H1N1" FT /mol_type="viral cRNA" FT /country="USA:Arkansas" FT /collection_date="05-Jan-2020" FT /db_xref="taxon:11320" FT gene 13..2286 FT /gene="PB1" FT CDS 13..2286 FT /codon_start=1 FT /gene="PB1" FT /product="polymerase PB1" FT /protein_id="QIJ23757.1" FT /translation="MDVNPTLLFLKIPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNR FT THQYSEKGKWTTNTETGAPQLNPVDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFE FT NSCLETMEVVQQTRVDKLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRL FT IDFLKDVMESMNKEEIEITTHFQRKRRVRDNMTKKMVTQRTIGKKKQRLNKRGYLIRAL FT TLNTMTKDAERGKLKRRAIATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAK FT LANVVRKMMTNSQDTEISFTITGDNTKWNENQNPRMFLAMITYITRNQPEWFRNILSMA FT PIMFSNKMARLGKGYMFESKRMKIRTQIPAEMLASIDLKYFNESTKKKIEKIRPLLMDG FT TASLSPGMMMGMFNMLSTVLGVSILNLGQKKYTKTTYWWDGLQSSDDFALIVNAPNHEG FT IQAGVDRFYRTCKLVGINMSKKKSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSGV FT NESADMSIGVTVIKNNMINNDLGPATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFEL FT KKLWDQTQSKVGLLVSDGGPNLYNIRNLHIPEVCLKWELMDDDYRGRLCNPLNPFVSHK FT EIDSVNNAVVMPAHGPAKSMEYDAVATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCN FT LFEKFFPSSSYRRPVGISSMVEAMVSRARIDARVDFESGRIKKEEFSEIMKICSTIEEL FT RRQK" FT gene 107..379 FT /gene="PB1-F2" FT misc_feature 107..379 FT /gene="PB1-F2" FT /note="nonfunctional PB1-F2 protein due to mutation" XX SQ Sequence 2316 BP; 831 A; 436 C; 518 G; 531 T; 0 other; caaaccattt gaatggatgt caatccgact ctacttttcc taaaaattcc agcacaaaat 60 gccataagca ccacattccc ttatactgga gatcctccat acagccatgg gacaggaaca 120 ggatacacca tggacacagt aaacagaaca catcaatact cagaaaaggg gaagtggaca 180 acaaacacag agactggtgc accccagctc aacccggttg acggaccact acctgaagat 240 aatgaaccaa gtgggtatgc acaaacagac tgtgttctag aggctatggc tttccttgaa 300 gaatcccatc caggaatatt tgagaattca tgccttgaaa caatggaagt tgttcaacaa 360 acaagggtag ataaactgac tcaaggtcgc cagacttatg attggacatt aaacagaaat 420 caaccggcag caactgcatt ggccaacacc atagaagttt tcagatcgaa tggcctaaca 480 gctaacgagt caggaaggct aatagatttc ttaaaggatg tgatggaatc aatgaacaaa 540 gaggaaatag agataacaac ccactttcaa agaaaaagga gagtaaggga caacatgacc 600 aagaagatgg tcacgcaaag aacaatagga aagaagaaac agaggctgaa taagagaggc 660 tatctaataa gagcactgac attaaatacg atgaccaaag atgcagagag aggcaagtta 720 aaaagaaggg ctatcgcaac acctgggatg cagattagag gtttcgtata ctttgttgaa 780 actttagcta ggagcatttg cgaaaagctt gaacagtctg ggctcccagt aggaggcaat 840 gaaaagaagg ccaaattggc aaatgttgtg agaaagatga tgactaattc acaagataca 900 gagatctctt tcacaatcac tggggacaac actaaatgga atgaaaatca aaatcctcga 960 atgttcctgg cgatgattac atatatcacc agaaatcaac ccgagtggtt tagaaacatt 1020 ctgagcatgg cacccataat gttctcaaac aaaatggcaa gactaggaaa agggtacatg 1080 ttcgagagta aaagaatgaa gattcgaaca caaataccag cagaaatgct agcaagcatt 1140 gatctaaagt atttcaatga atcaacaaag aaaaaaattg aaaaaataag gcctctttta 1200 atggatggca cagcatcact gagtcctggg atgatgatgg gcatgttcaa catgctaagt 1260 acggtcttgg gagtctcgat actgaatctt ggacaaaaga aatacaccaa gacaacatac 1320 tggtgggatg ggctccaatc atctgacgat tttgctctca tagtgaatgc accaaaccat 1380 gaaggaatac aagcaggagt ggacagattc tacaggacct gcaagttagt gggaatcaac 1440 atgagcaaaa agaaatccta tataaataag acagggacat ttgaattcac aagctttttt 1500 tatcgctatg gatttgtggc taattttagc atggagctac ccagctttgg agtgtctgga 1560 gtaaatgaat cagctgacat gagtattgga gtaacagtaa taaagaacaa catgataaac 1620 aatgaccttg gacctgcaac ggctcagatg gctcttcaat tattcatcaa agactacaga 1680 tacacatata ggtgtcatag gggagacaca caaattcaga cgagaagatc atttgagttg 1740 aagaagctat gggatcaaac ccaatcaaag gtagggctat tagtatcaga tggaggacca 1800 aacttataca acatacggaa tcttcacatt cctgaagtct gcttaaaatg ggagctaatg 1860 gatgatgatt atcggggaag actttgtaat cccctgaatc cctttgtgag tcataaggag 1920 attgattctg taaacaatgc tgtggtaatg ccagcccatg gcccagccaa aagcatggaa 1980 tatgatgccg ttgctactac acattcctgg attcccaaga ggaatcgttc tattctcaac 2040 acaagccaaa ggggaattct tgaggatgaa cagatgtacc agaagtgttg caatttattc 2100 gagaaatttt tccctagcag ttcatatagg agaccggttg gaatttctag catggtggag 2160 gccatggtgt ctagggcccg gattgatgcc agagtcgact ttgagtctgg acggatcaag 2220 aaagaagagt tctctgagat catgaagatc tgttccacca ttgaagaact cagacggcaa 2280 aaataatgaa tttaacttgt ccttcatgaa aaaatg 2316 // ID MT167248; SV 1; linear; viral cRNA; STD; VRL; 2208 BP. XX AC MT167248; XX PR Project:PRJNA37813; XX DT 17-MAR-2020 (Rel. 144, Created) DT 17-MAR-2020 (Rel. 144, Last updated, Version 1) XX DE Influenza A virus (A/Arkansas/02/2020(H1N1)) segment 3 polymerase PA (PA) DE and PA-X protein (PA-X) genes, complete cds. XX KW . XX OS Influenza A virus OC Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Insthoviricetes; OC Articulavirales; Orthomyxoviridae; Alphainfluenzavirus. XX RN [1] RP 1-2208 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT "Influenza Sequencing Activity group"; RL Unpublished. XX RN [2] RP 1-2208 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT ; RL Submitted (09-MAR-2020) to the INSDC. RL WHO Collaborating Center for Surveillance, Epidemiology and Control of RL Influenza, Influenza Division, Centers for Disease Control and Prevention, RL 1600 Clifton Road, N.E., Atlanta, GA 30333, USA XX DR MD5; e1aedb06df5632f44628a610b5fce1ed. XX CC ##FluData-START## CC EPI_ISOLATE_ID :: EPI_ISL_409758 CC NAME :: A/Arkansas/02/2020 CC TYPE :: H1N1 CC Segment_name :: PA CC HOST_AGE :: 32 CC HOST_GENDER :: M CC PASSAGE :: C1 (2020-01-23) CC LOCATION :: United States / Arkansas CC COLLECT_DATE :: 05-Jan-2020 CC Lineage :: A(H1N1)pdm09 CC RESIST_TO_OSELTAMIVIR :: Sensitive CC RESIST_TO_ZANAMVIR :: Sensitive CC SPECIMEN_ID :: 1933800000-119 ORIGINAL CC SENDER_LAB :: Arkansas Department of Health CC SEQLAB_SAMPLE_ID :: 3026054563 CC EPI_SEQUENCE_ID :: EPI1688859 CC ##FluData-END## XX FH Key Location/Qualifiers FH FT source 1..2208 FT /organism="Influenza A virus" FT /segment="3" FT /host="Homo sapiens" FT /strain="A/Arkansas/02/2020" FT /serotype="H1N1" FT /mol_type="viral cRNA" FT /country="USA:Arkansas" FT /collection_date="05-Jan-2020" FT /db_xref="taxon:11320" FT gene 13..2163 FT /gene="PA" FT CDS 13..2163 FT /codon_start=1 FT /gene="PA" FT /product="polymerase PA" FT /protein_id="QIJ23758.1" FT /translation="MEDFVRQCFNPMVVELAEKAMKEYGEDPKIETNKFAAICTHLEVC FT FMYSDFHFIDERGESIIVESGDPNALLKHRFEIIEGRDRIMAWTVVNSICNTTGIEKPK FT FLPDLYDYKENRFIEIGVTRREVHIYYLEKANKIKSEKTHIHIFSFTGEEMATKADYTL FT DEESRARIKTRLFTIRQEMASRSLWDSFRQSERGEETIEEKFEITGTMRKLADQSLPPN FT FSSLENFRAYVDRFEPNGCIEGKLSQMSKEVNAKIEPFLRTTPRPLRLPDGPLCHQRSK FT FLLMDALKLSIEDPSHEGEGIPLYDAIKCMKTFFGWKEPKIVKPHEKGVNPNYLMAWKQ FT VLAELQDIENEEKIPRTKNMKKTSQLKWALGENMAPEKVDFDDCKDVGDLKQYDSDEPE FT LRSLASWVQNEFNKACELTDSSWIELDEIGEDVAPIEYIASMRRNYFTAEVSHCRATEY FT IMKGVYINTALLNASCAAMDDFQLIPMISKCRTKEGRRKTNLYGFIIKGRSHLRNDTDV FT VNFVSMEFSLTDPRLEPHKWEKYCVLEIGDMLLRTAIGQVSRPMFLYVRTNGTSKIKMK FT WGMEMRRCLLQSLQQIESMIEAESSVKEKDMTKEFFENKSETWPIGESPRGVEEGSIGK FT VCRTLLAKSVFNSLYASPQLEGFSAESRKLLLIVQALRDNLEPGTFDLGGLYEAIEECL FT INDPWVLLNASWFNSFLTHALK" FT gene 13..712 FT /gene="PA-X" FT CDS join(13..582,584..712) FT /codon_start=1 FT /ribosomal_slippage FT /gene="PA-X" FT /product="PA-X protein" FT /protein_id="QIJ23759.1" FT /translation="MEDFVRQCFNPMVVELAEKAMKEYGEDPKIETNKFAAICTHLEVC FT FMYSDFHFIDERGESIIVESGDPNALLKHRFEIIEGRDRIMAWTVVNSICNTTGIEKPK FT FLPDLYDYKENRFIEIGVTRREVHIYYLEKANKIKSEKTHIHIFSFTGEEMATKADYTL FT DEESRARIKTRLFTIRQEMASRSLWDSFVSPKEAKKQLKKSLRLQELCASLPTKVSHQT FT SPALKTSEPM" XX SQ Sequence 2208 BP; 746 A; 423 C; 514 G; 525 T; 0 other; tactgatcca aaatggaaga ctttgttcga caatgcttca atccaatggt cgtcgagctt 60 gcggaaaagg caatgaaaga atatggggaa gaccccaaaa tcgaaactaa taaatttgct 120 gcaatttgca cacatttgga agtttgtttc atgtattcgg atttccattt cattgatgaa 180 cggggtgaat caataattgt agaatctggt gacccaaatg cactattgaa gcaccgattt 240 gagataattg aaggaagaga ccgaatcatg gcctggacag tggtgaacag tatatgtaac 300 acaacaggga tagagaagcc taaatttctt cctgatttgt atgattacaa agagaaccgg 360 ttcattgaaa ttggagtaac acggagagaa gtccacatat attacctaga gaaagccaac 420 aaaataaaat ctgagaagac acacattcac atcttttcat tcactggaga ggagatggcc 480 accaaagcgg actacaccct tgacgaagag agcagagcaa gaatcaaaac taggcttttc 540 actataagac aagaaatggc cagtaggagt ctatgggatt cctttcgtca gtccgaaaga 600 ggcgaagaaa caattgaaga aaagtttgag attacaggaa ctatgcgcaa gcttgccgac 660 caaagtctcc caccaaactt ctccagcctt gaaaacttca gagcctatgt agatagattc 720 gagccgaacg gctgcattga gggcaagctt tcccaaatgt caaaagaagt gaacgccaaa 780 attgaaccat tcttgaggac gacaccacgc cccctcagat tacctgatgg acctctttgc 840 catcagcggt caaagttcct gctgatggat gctctgaaat taagcattga agacccgagt 900 cacgaggggg aaggaatacc actatatgat gcaatcaaat gcatgaagac attctttggc 960 tggaaagagc ctaaaatagt caaaccacat gagaaaggcg taaatcccaa ttacctcatg 1020 gcttggaagc aggtgctagc agagctacag gacattgaaa atgaagagaa aatcccaaga 1080 acaaagaaca tgaagaaaac aagccaattg aagtgggcac tcggtgaaaa tatggcacca 1140 gaaaaagtgg actttgatga ctgtaaagat gttggagacc ttaaacagta tgacagtgat 1200 gagccagagc tcagatctct agcaagctgg gtccaaaatg aattcaataa ggcatgtgaa 1260 ttgactgatt caagctggat agaacttgat gaaataggag aagatgttgc cccgattgaa 1320 tatatagcaa gcatgaggag gaactatttt acagcagaag tgtcccactg cagggctact 1380 gaatacataa tgaagggagt gtacataaat acggccttgc tcaatgcatc ctgtgcagcc 1440 atggatgact ttcagctgat tccaatgata agcaaatgta ggaccaaaga aggaagacgg 1500 aaaacaaacc tgtatgggtt cattataaaa ggaaggtctc atttgagaaa tgatactgat 1560 gtagtgaatt ttgtaagtat ggagttctca ctcactgatc caagactgga accacacaaa 1620 tgggaaaaat actgtgttct tgaaatagga gacatgctat tgaggactgc aataggccaa 1680 gtgtcgaggc ccatgttcct atatgtaaga accaatggaa cctccaagat caagatgaaa 1740 tggggcatgg aaatgaggcg ctgccttctt caatctcttc agcagattga gagcatgatt 1800 gaagccgagt cttctgtcaa agagaaagac atgaccaagg aattctttga aaacaaatcg 1860 gaaacatggc caatcggaga gtcacccagg ggagtggagg aaggctctat tggaaaagtg 1920 tgcagaacct tactggcaaa atctgtgttc aacagtctat atgcttctcc acaacttgag 1980 gggttttcgg ctgaatcaag aaaattgctt ctcattgttc aggcacttag ggacaacctg 2040 gaacctggaa cctttgatct tggggggcta tatgaagcaa tcgaggagtg cttgattaat 2100 gatccctggg ttttgcttaa tgcatcttgg ttcaactcct tcctcacaca tgcactgaag 2160 tagttgtagc aatgctacta tttgctatcc atattgtcca aaaaagta 2208 // ID MT167249; SV 1; linear; viral cRNA; STD; VRL; 1752 BP. XX AC MT167249; XX PR Project:PRJNA37813; XX DT 17-MAR-2020 (Rel. 144, Created) DT 17-MAR-2020 (Rel. 144, Last updated, Version 1) XX DE Influenza A virus (A/Arkansas/02/2020(H1N1)) segment 4 hemagglutinin (HA) DE gene, complete cds. XX KW . XX OS Influenza A virus OC Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Insthoviricetes; OC Articulavirales; Orthomyxoviridae; Alphainfluenzavirus. XX RN [1] RP 1-1752 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT "Influenza Sequencing Activity group"; RL Unpublished. XX RN [2] RP 1-1752 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT ; RL Submitted (09-MAR-2020) to the INSDC. RL WHO Collaborating Center for Surveillance, Epidemiology and Control of RL Influenza, Influenza Division, Centers for Disease Control and Prevention, RL 1600 Clifton Road, N.E., Atlanta, GA 30333, USA XX DR MD5; a51f632e7fc9cbd6afc6ab80ad42adbf. XX CC ##FluData-START## CC EPI_ISOLATE_ID :: EPI_ISL_409758 CC NAME :: A/Arkansas/02/2020 CC TYPE :: H1N1 CC Segment_name :: HA CC HOST_AGE :: 32 CC HOST_GENDER :: M CC PASSAGE :: C1 (2020-01-23) CC LOCATION :: United States / Arkansas CC COLLECT_DATE :: 05-Jan-2020 CC Lineage :: A(H1N1)pdm09 CC RESIST_TO_OSELTAMIVIR :: Sensitive CC RESIST_TO_ZANAMVIR :: Sensitive CC SPECIMEN_ID :: 1933800000-119 ORIGINAL CC SENDER_LAB :: Arkansas Department of Health CC SEQLAB_SAMPLE_ID :: 3026054563 CC EPI_SEQUENCE_ID :: EPI1688863 CC ##FluData-END## XX FH Key Location/Qualifiers FH FT source 1..1752 FT /organism="Influenza A virus" FT /segment="4" FT /host="Homo sapiens" FT /strain="A/Arkansas/02/2020" FT /serotype="H1N1" FT /mol_type="viral cRNA" FT /country="USA:Arkansas" FT /collection_date="05-Jan-2020" FT /db_xref="taxon:11320" FT gene 21..1721 FT /gene="HA" FT CDS 21..1721 FT /codon_start=1 FT /gene="HA" FT /product="hemagglutinin" FT /function="receptor binding and fusion protein" FT /protein_id="QIJ23760.1" FT /translation="MKAILVVLLYTFTTANADTLCIGYHANNSTDTVDTVLEKNVTVTH FT SVNLLEDKHNGKLCKLRGVAPLHLGKCNIAGWILGNPECDSLSTARSWSYIVETSNSDN FT GTCYPGDFINYEELREQLSSVSSLERFEIFPKANSWPNHDSNKGVTAACPHAGAKSFYK FT NLIWLVKKGNSYPKINQTYINDKGKEVLVLWGIHHPPTTADQQSLYQNADAYVFVGTSR FT YSKKFKPEIATRPKVRDQEGRMNYYWTLVEPGDKITFEATGNLVVPRYAFTMERNAGSG FT IIISDTPVHDCNTTCQTPEGAINTSLPFQNVHPITIGTCPKYVKSTKLRLATGLRNVPS FT IQSRGLFGAIAGFIEGGWTGMVDGWYGYHHQNEQGSGYAADLKSTQNAIDKITNKVNSV FT IEKMNTQFTAVGKEFNHLEKRMENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSN FT VKNLYEKVRNQLKNNAKEIGNGCFEFYHKCDNTCMESVKNGTYDYPKYSEEAKLSREKI FT DGVKLDSTRIYQILAIYSTVASSLVLVVSLGAISFWMCSNGSLQCRICI" FT sig_peptide 21..71 FT /gene="HA" FT mat_peptide 72..1052 FT /gene="HA" FT /product="HA1" FT mat_peptide 1053..1718 FT /gene="HA" FT /product="HA2" XX SQ Sequence 1752 BP; 630 A; 333 C; 381 G; 408 T; 0 other; ggaaaacaaa agcaacaaaa atgaaggcaa tactagtagt tctgctgtat acatttacaa 60 ccgcaaacgc agacacatta tgtataggtt atcatgcgaa caattcaaca gacactgtag 120 atacagtact agaaaagaat gtaacagtaa cacactctgt taatcttctg gaagacaagc 180 ataacggaaa actatgcaaa ctaagagggg tagccccatt gcatttgggt aaatgcaaca 240 ttgctggctg gatcctggga aatccagagt gtgactcact ctccacagca agatcatggt 300 cctacattgt ggaaacgtct aattcagaca atggaacatg ttacccagga gatttcatca 360 attatgagga gctaagagag caattgagct cagtgtcatc acttgaaagg tttgaaatat 420 tccccaaggc aaattcatgg cctaatcatg actcgaacaa aggtgtaacg gcagcatgtc 480 ctcacgctgg agcaaaaagc ttctacaaaa acttgatatg gctggttaaa aaaggaaatt 540 catacccaaa gatcaaccaa acctacatta atgataaagg gaaagaagtc ctcgtgctgt 600 ggggcattca ccatccacct actactgctg accaacaaag tctctatcag aatgcagatg 660 catatgtttt tgtggggaca tcaagataca gcaagaagtt caagccggaa atagcaacaa 720 gacccaaagt gagggatcaa gaagggagaa tgaactatta ctggacacta gtagagccgg 780 gagacaaaat aacattcgaa gcaactggaa atctagtggt accgagatat gcattcacaa 840 tggaaagaaa tgctggatct ggtattatca tttcagatac accagtccac gactgcaata 900 caacttgtca gacccccgag ggtgctataa acaccagtct cccatttcag aatgtacatc 960 cgatcacaat tgggacatgt ccaaagtatg taaaaagcac aaaattgaga ctggccacag 1020 gattgaggaa tgtcccgtct attcaatcta gaggcctatt cggggccatt gccggcttca 1080 ttgaaggggg gtggacaggg atggtagatg gatggtatgg ttatcaccat caaaatgaac 1140 aggggtcagg atatgcagcc gatctgaaga gcacacaaaa tgccattgat aagattacta 1200 acaaagtaaa ttctgttatt gaaaagatga atacacagtt cacagcagtg ggtaaagagt 1260 tcaaccacct tgaaaaaaga atggaaaatc taaacaaaaa agttgatgat ggtttcctgg 1320 acatttggac ttacaatgcc gaactgttgg ttctactgga aaatgaaaga actttggact 1380 atcacgattc aaatgtgaag aacttgtatg aaaaagtaag aaaccagtta aaaaacaatg 1440 ccaaagaaat tggaaatggc tgctttgaat tttaccacaa atgcgataac acatgcatgg 1500 aaagtgtcaa gaatgggact tatgactacc caaaatactc agaagaagca aaactaagca 1560 gagaaaaaat agatggagta aagctggact caacaaggat ctaccagatt ttggcgatct 1620 attcaactgt cgccagttca ttggtactgg tagtctccct gggggcaatc agcttctgga 1680 tgtgctctaa tgggtctcta cagtgtagaa tatgtattta acattaggat ttcagaatca 1740 tgagaaaaac ac 1752 // ID MT167250; SV 1; linear; viral cRNA; STD; VRL; 1540 BP. XX AC MT167250; XX PR Project:PRJNA37813; XX DT 17-MAR-2020 (Rel. 144, Created) DT 17-MAR-2020 (Rel. 144, Last updated, Version 1) XX DE Influenza A virus (A/Arkansas/02/2020(H1N1)) segment 5 nucleocapsid protein DE (NP) gene, complete cds. XX KW . XX OS Influenza A virus OC Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Insthoviricetes; OC Articulavirales; Orthomyxoviridae; Alphainfluenzavirus. XX RN [1] RP 1-1540 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT "Influenza Sequencing Activity group"; RL Unpublished. XX RN [2] RP 1-1540 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT ; RL Submitted (09-MAR-2020) to the INSDC. RL WHO Collaborating Center for Surveillance, Epidemiology and Control of RL Influenza, Influenza Division, Centers for Disease Control and Prevention, RL 1600 Clifton Road, N.E., Atlanta, GA 30333, USA XX DR MD5; 5c38d2b9f71aa27f7d98b8e2b21e8c4a. XX CC ##FluData-START## CC EPI_ISOLATE_ID :: EPI_ISL_409758 CC NAME :: A/Arkansas/02/2020 CC TYPE :: H1N1 CC Segment_name :: NP CC HOST_AGE :: 32 CC HOST_GENDER :: M CC PASSAGE :: C1 (2020-01-23) CC LOCATION :: United States / Arkansas CC COLLECT_DATE :: 05-Jan-2020 CC Lineage :: A(H1N1)pdm09 CC RESIST_TO_OSELTAMIVIR :: Sensitive CC RESIST_TO_ZANAMVIR :: Sensitive CC SPECIMEN_ID :: 1933800000-119 ORIGINAL CC SENDER_LAB :: Arkansas Department of Health CC SEQLAB_SAMPLE_ID :: 3026054563 CC EPI_SEQUENCE_ID :: EPI1688856 CC ##FluData-END## XX FH Key Location/Qualifiers FH FT source 1..1540 FT /organism="Influenza A virus" FT /segment="5" FT /host="Homo sapiens" FT /strain="A/Arkansas/02/2020" FT /serotype="H1N1" FT /mol_type="viral cRNA" FT /country="USA:Arkansas" FT /collection_date="05-Jan-2020" FT /db_xref="taxon:11320" FT gene 34..1530 FT /gene="NP" FT CDS 34..1530 FT /codon_start=1 FT /gene="NP" FT /product="nucleocapsid protein" FT /protein_id="QIJ23761.1" FT /translation="MASQGTKRSYEQMETGGERQDTTEIRASVGRMIGGIGRFYIQMCT FT ELKLSDYDGRLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRIDGKW FT TRELILYDKEEIRRVWRQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRM FT CSLMQGSTLPRRSGAAGAAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTRVAYERM FT CNILKGKFQTAAQRAMMDQVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVY FT GLAVASGHDFEREGYSLVGIDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFED FT LRVSSFIRGKKVIPRGKLSTRGVQIASNENVETMDSNTLELRSRYWAIRTRSGGNTNQQ FT KASAGQISVQPTFSVQRNLPFERATVMAAFSGNNEGRTSDMRTEVIRMMESAKPEDLSF FT QGRGVFELSDEKATNPIVPSFDMSNEGSYFFGDNAEEYDN" XX SQ Sequence 1540 BP; 521 A; 296 C; 398 G; 325 T; 0 other; gtagataatc actcaatgag tgacatcgaa gccatggcgt ctcaaggcac caaacgatca 60 tatgaacaaa tggagactgg tggggagcgc caggatacca cagaaatcag agcatctgtt 120 ggaagaatga ttggtggaat cgggagattc tacatccaaa tgtgcactga attaaaactc 180 agtgattatg atggacgact aatccagaat agcataacaa tagagaggat ggtgctttct 240 gcttttgatg agagaagaaa taaataccta gaagagcatc cgagtgctgg gaaggaccct 300 aagaaaacag gaggacccat ctatagaaga atagacggaa aatggacgag agaactcatc 360 ctttatgaca aagaagaaat aaggagagtt tggcgccaag caaacaatgg cgaagatgca 420 acagcaggtc ttactcatat catgatttgg cattccaatc tgaatgatgc cacataccag 480 aggacaagag cacttgttcg cactgggatg gatcccagaa tgtgctctct aatgcaaggt 540 tcaacacttc ccaggaggtc tggtgccgca ggtgctgcag taaaaggagt tggaacaata 600 gctatggagt taatcagaat gataaaacgt ggaatcaatg accgaaattt ctggaggggt 660 gaaaatggac gaaggacaag agttgcttat gaaagaatgt gcaatatcct caaaggaaaa 720 tttcaaacag ctgcccagag ggcaatgatg gatcaagtaa gagaaagtcg aaacccagga 780 aacgcagaga ttgaagacct cattttcctg gcacggtcag cactcattct gagaggatca 840 gttgcacata aatcctgtct gcctgcttgt gtgtatgggc ttgcagtagc aagtggccat 900 gactttgaaa gggaagggta ctcactggtc gggatagacc cattcaaatt actccaaaac 960 agtcaagtgg tcagtctgat gagaccaaat gaaaatccag ctcacaagag tcaattggta 1020 tggatggcat gccactctgc tgcatttgaa gatttaagag tatcaagttt cataagagga 1080 aagaaagtga tcccaagagg aaagctttcc acaagagggg ttcagattgc ttcaaatgag 1140 aatgtggaaa ccatggactc caataccctg gaactaagaa gcagatactg ggccataaga 1200 accaggagtg gaggaaatac caatcaacag aaggcatccg caggccagat cagtgtgcag 1260 cctacattct cagtgcagcg aaatctccct ttcgaaagag caaccgttat ggcagcattc 1320 agcgggaaca atgaaggacg gacatccgac atgcgaacag aagttataag aatgatggaa 1380 agtgcaaagc cagaggattt gtccttccag gggcggggag tcttcgagct ctcggacgaa 1440 aaggcaacga acccgatcgt gccttccttt gacatgagta atgaagggtc ttatttcttc 1500 ggagacaatg cagaggagta tgacaattga agaaaaatac 1540 // ID MT167251; SV 1; linear; viral cRNA; STD; VRL; 1433 BP. XX AC MT167251; XX PR Project:PRJNA37813; XX DT 17-MAR-2020 (Rel. 144, Created) DT 17-MAR-2020 (Rel. 144, Last updated, Version 1) XX DE Influenza A virus (A/Arkansas/02/2020(H1N1)) segment 6 neuraminidase (NA) DE gene, complete cds. XX KW . XX OS Influenza A virus OC Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Insthoviricetes; OC Articulavirales; Orthomyxoviridae; Alphainfluenzavirus. XX RN [1] RP 1-1433 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT "Influenza Sequencing Activity group"; RL Unpublished. XX RN [2] RP 1-1433 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT ; RL Submitted (09-MAR-2020) to the INSDC. RL WHO Collaborating Center for Surveillance, Epidemiology and Control of RL Influenza, Influenza Division, Centers for Disease Control and Prevention, RL 1600 Clifton Road, N.E., Atlanta, GA 30333, USA XX DR MD5; 23dfcd7c6bec340d362c36609f2b3581. XX CC ##FluData-START## CC EPI_ISOLATE_ID :: EPI_ISL_409758 CC NAME :: A/Arkansas/02/2020 CC TYPE :: H1N1 CC Segment_name :: NA CC HOST_AGE :: 32 CC HOST_GENDER :: M CC PASSAGE :: C1 (2020-01-23) CC LOCATION :: United States / Arkansas CC COLLECT_DATE :: 05-Jan-2020 CC Lineage :: A(H1N1)pdm09 CC RESIST_TO_OSELTAMIVIR :: Sensitive CC RESIST_TO_ZANAMVIR :: Sensitive CC SPECIMEN_ID :: 1933800000-119 ORIGINAL CC SENDER_LAB :: Arkansas Department of Health CC SEQLAB_SAMPLE_ID :: 3026054563 CC EPI_SEQUENCE_ID :: EPI1688862 CC ##FluData-END## XX FH Key Location/Qualifiers FH FT source 1..1433 FT /organism="Influenza A virus" FT /segment="6" FT /host="Homo sapiens" FT /strain="A/Arkansas/02/2020" FT /serotype="H1N1" FT /mol_type="viral cRNA" FT /country="USA:Arkansas" FT /collection_date="05-Jan-2020" FT /db_xref="taxon:11320" FT gene 9..1418 FT /gene="NA" FT CDS 9..1418 FT /codon_start=1 FT /gene="NA" FT /product="neuraminidase" FT /protein_id="QIJ23762.1" FT /translation="MNPNQKIITIGSICMTIGMANLILQIGNIISIWVSHSIQIGNQSQ FT IETCNQSVITYENNTWVNQTYVNISNTNFAARQSVASVKLAGNSSLCPVSGWAIYSKDN FT SVRIGSKGDVFVIREPFISCSPLECRTFFLTQGALLNDKHSNGTIKDRSPYRTLMSCPI FT GEVPSPYNSRFESVAWSASACHDGINWLTIGISGPDSGAVAVLKYNGIITDTIKSWRNN FT ILRTQESECACVNGSCFTIMTDGPSDGQASYKIFRIEKGKIIKSVEMKAPNYHYEECSC FT YPDSSEITCVCRDNWHGSNRPWVSFNQNLEYQIGYICSGVLGDNPRPNDKTGSCGPVSS FT NGANGVKGFSFKYGNGVWIGRTKSISSRKGFEMIWDPNGWTGTDNKFSIKQDIVGINEW FT SGYSGSFVQHPELTGLDCIRPCFWVELIRGRPEENTIWTSGSSISFCGVDSDTVGWSWP FT DGAELPFTIDK" XX SQ Sequence 1433 BP; 459 A; 263 C; 337 G; 374 T; 0 other; agtttaaaat gaatccaaac caaaagataa taaccattgg ttcgatctgt atgacaattg 60 gaatggctaa cttaatatta caaattggaa acataatctc aatatgggtt agccactcaa 120 ttcaaattgg aaatcaaagc cagattgaaa catgcaatca aagcgtcatt acttatgaga 180 acaacacttg ggtaaatcag acatatgtta acatcagcaa caccaacttt gctgctagac 240 agtcagtggc ttccgtgaaa ttagcgggca attcctctct ctgccctgtt agtggatggg 300 ctatatacag taaagacaac agtgtaagaa tcggctccaa gggggatgtg tttgtcataa 360 gggaaccatt catatcatgc tctcccttgg aatgcagaac cttcttcttg actcaagggg 420 ctttgctaaa tgacaaacat tccaatggaa ccattaaaga caggagccca tatcgaaccc 480 taatgagctg tcctattggt gaagttccct ctccatacaa ctcaagattt gagtcagtcg 540 cttggtcagc gagtgcttgt catgatggca tcaattggct aacaattgga atttctggcc 600 cagacagtgg ggcagtggct gtgttaaaat acaatggcat aataacagac actatcaaga 660 gttggaggaa caatatattg agaacacaag agtctgaatg tgcatgtgta aatggttctt 720 gctttaccat aatgaccgat ggaccaagtg atggacaggc ctcatacaaa atcttcagaa 780 tagaaaaggg aaagataatc aaatcagttg aaatgaaagc ccctaattat cactatgagg 840 aatgctcctg ttaccctgat tctagtgaaa tcacatgtgt gtgcagggat aactggcatg 900 gctcgaatcg accgtgggtg tctttcaacc agaatctgga atatcagata ggatacatat 960 gcagtggggt tctcggagac aatccacgcc ctaatgataa gacaggcagt tgcggtccag 1020 tatcgtctaa tggagcaaat ggagtaaaag gattttcatt caaatacggc aatggtgttt 1080 ggatagggag aactaagagc attagttcaa ggaaaggttt tgagatgatt tgggatccga 1140 atggatggac tgggactgac aataaattct caataaagca agatatcgta ggaataaatg 1200 agtggtcagg gtatagcggg agttttgttc agcatccaga actaacaggg ctggattgta 1260 taagaccttg cttctgggtt gaactaataa gaggacgacc cgaagagaac acaatctgga 1320 ctagcgggag cagcatatcc ttttgtggtg tagacagtga cactgtgggt tggtcttggc 1380 cagacggtgc tgagttgcca tttaccattg acaagtaatt tgttcaaaaa act 1433 // ID MT167252; SV 1; linear; viral cRNA; STD; VRL; 1002 BP. XX AC MT167252; XX PR Project:PRJNA37813; XX DT 17-MAR-2020 (Rel. 144, Created) DT 17-MAR-2020 (Rel. 144, Last updated, Version 1) XX DE Influenza A virus (A/Arkansas/02/2020(H1N1)) segment 7 matrix protein 2 DE (M2) and matrix protein 1 (M1) genes, complete cds. XX KW . XX OS Influenza A virus OC Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Insthoviricetes; OC Articulavirales; Orthomyxoviridae; Alphainfluenzavirus. XX RN [1] RP 1-1002 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT "Influenza Sequencing Activity group"; RL Unpublished. XX RN [2] RP 1-1002 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT ; RL Submitted (09-MAR-2020) to the INSDC. RL WHO Collaborating Center for Surveillance, Epidemiology and Control of RL Influenza, Influenza Division, Centers for Disease Control and Prevention, RL 1600 Clifton Road, N.E., Atlanta, GA 30333, USA XX DR MD5; 576468fa94375ffcda24eb03ab3789a7. XX CC ##FluData-START## CC EPI_ISOLATE_ID :: EPI_ISL_409758 CC NAME :: A/Arkansas/02/2020 CC TYPE :: H1N1 CC Segment_name :: M CC HOST_AGE :: 32 CC HOST_GENDER :: M CC PASSAGE :: C1 (2020-01-23) CC LOCATION :: United States / Arkansas CC COLLECT_DATE :: 05-Jan-2020 CC Lineage :: A(H1N1)pdm09 CC RESIST_TO_OSELTAMIVIR :: Sensitive CC RESIST_TO_ZANAMVIR :: Sensitive CC SPECIMEN_ID :: 1933800000-119 ORIGINAL CC SENDER_LAB :: Arkansas Department of Health CC SEQLAB_SAMPLE_ID :: 3026054563 CC EPI_SEQUENCE_ID :: EPI1688858 CC ##FluData-END## XX FH Key Location/Qualifiers FH FT source 1..1002 FT /organism="Influenza A virus" FT /segment="7" FT /host="Homo sapiens" FT /strain="A/Arkansas/02/2020" FT /serotype="H1N1" FT /mol_type="viral cRNA" FT /country="USA:Arkansas" FT /collection_date="05-Jan-2020" FT /db_xref="taxon:11320" FT gene 14..995 FT /gene="M2" FT CDS join(14..39,728..995) FT /codon_start=1 FT /gene="M2" FT /product="matrix protein 2" FT /protein_id="QIJ23764.1" FT /translation="MSLLTEVETPTRSGWECRCSGSSDPLVIAANIIGILHLILWITDR FT LFFKCIYRRFKYGLKRGPSTEGVPESMREEYQQEQQSAVDVDDGHFVNIELE" FT gene 14..772 FT /gene="M1" FT CDS 14..772 FT /codon_start=1 FT /gene="M1" FT /product="matrix protein 1" FT /protein_id="QIJ23763.1" FT /translation="MSLLTEVETYVLSIIPSGPLKAEIAQRLESVFAGKNTDLEALMEW FT LKTRPILSPLTKGILGFVFTLTVPSERGLQRRRFIQNALNGNGDPNNMDRAVKLYKKLK FT REITFHGAKEVSLSYSTGALASCMGLIYNRMGTVTTEAAFGLVCATCEQIADSQHRSHR FT QMATTTNPLIRHENRMVLASTTAKAMEQVAGSSEQAAEAMEVANKTRQMVHAMRTIGTH FT PSSSAGLRDDLLENLQAYQKRMGVQMQRFK" XX SQ Sequence 1002 BP; 297 A; 209 C; 257 G; 239 T; 0 other; tagatgttta aagatgagtc ttctaaccga ggtcgaaacg tacgttcttt ctatcatccc 60 atcaggcccc ctcaaagccg agatcgcaca gagactggaa agtgtctttg caggaaagaa 120 cacagatctt gaggctctca tggaatggct aaagacaaga ccaatcttgt cacctctgac 180 taagggaatt ttaggatttg tgttcacgct caccgtgccc agtgagcgag gactgcagcg 240 tagacgcttt atccaaaatg ccctaaatgg aaatggggac ccgaacaaca tggatagagc 300 agttaaacta tacaagaagc tcaaaagaga aataacgttc catggggcca aggaggtgtc 360 actaagctat tcaactggtg cacttgcaag ttgcatgggc ctcatataca acaggatggg 420 aacagtgacc acagaagctg ctttcggtct agtttgtgcc acttgtgaac agattgctga 480 ttcacagcat cggtctcaca gacaaatggc tactaccaca aatccactaa tcaggcatga 540 aaacagaatg gtgttggcta gcactacagc aaaggctatg gaacaggtgg ctggatcgag 600 tgaacaggca gcggaggcca tggaggttgc taataagact aggcagatgg tgcatgcaat 660 gagaactatt gggactcatc ctagctccag tgctggtctg agagatgacc ttcttgaaaa 720 tttgcaggcc taccagaagc ggatgggagt gcagatgcag cggttcaagt gatcctctcg 780 tcattgcagc aaacatcatt gggatcttgc acctgatatt gtggattact gatcgtcttt 840 ttttcaaatg catttatcgt cgctttaaat acggtctgaa aagagggcct tctacggaag 900 gagtgcctga gtccatgagg gaagaatatc aacaggagca gcagagtgct gtggatgttg 960 acgatggtca ttttgtcaac atagagctag agtaaaaaac ta 1002 // ID MT167253; SV 1; linear; viral cRNA; STD; VRL; 865 BP. XX AC MT167253; XX PR Project:PRJNA37813; XX DT 17-MAR-2020 (Rel. 144, Created) DT 17-MAR-2020 (Rel. 144, Last updated, Version 1) XX DE Influenza A virus (A/Arkansas/02/2020(H1N1)) segment 8 nuclear export DE protein (NEP) and nonstructural protein 1 (NS1) genes, complete cds. XX KW . XX OS Influenza A virus OC Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Insthoviricetes; OC Articulavirales; Orthomyxoviridae; Alphainfluenzavirus. XX RN [1] RP 1-865 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT "Influenza Sequencing Activity group"; RL Unpublished. XX RN [2] RP 1-865 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT ; RL Submitted (09-MAR-2020) to the INSDC. RL WHO Collaborating Center for Surveillance, Epidemiology and Control of RL Influenza, Influenza Division, Centers for Disease Control and Prevention, RL 1600 Clifton Road, N.E., Atlanta, GA 30333, USA XX DR MD5; 69a215dc31931ce3068cc08e48101325. XX CC ##FluData-START## CC EPI_ISOLATE_ID :: EPI_ISL_409758 CC NAME :: A/Arkansas/02/2020 CC TYPE :: H1N1 CC Segment_name :: NS CC HOST_AGE :: 32 CC HOST_GENDER :: M CC PASSAGE :: C1 (2020-01-23) CC LOCATION :: United States / Arkansas CC COLLECT_DATE :: 05-Jan-2020 CC Lineage :: A(H1N1)pdm09 CC RESIST_TO_OSELTAMIVIR :: Sensitive CC RESIST_TO_ZANAMVIR :: Sensitive CC SPECIMEN_ID :: 1933800000-119 ORIGINAL CC SENDER_LAB :: Arkansas Department of Health CC SEQLAB_SAMPLE_ID :: 3026054563 CC EPI_SEQUENCE_ID :: EPI1688857 CC ##FluData-END## XX FH Key Location/Qualifiers FH FT source 1..865 FT /organism="Influenza A virus" FT /segment="8" FT /host="Homo sapiens" FT /strain="A/Arkansas/02/2020" FT /serotype="H1N1" FT /mol_type="viral cRNA" FT /country="USA:Arkansas" FT /collection_date="05-Jan-2020" FT /db_xref="taxon:11320" FT gene 15..852 FT /gene="NEP" FT /gene_synonym="NS2" FT CDS join(15..44,517..852) FT /codon_start=1 FT /gene="NEP" FT /gene_synonym="NS2" FT /product="nuclear export protein" FT /note="nonstructural protein 2" FT /protein_id="QIJ23766.1" FT /translation="MESNTMSSFQDILMRMSKMQLGSSSEDLSGMVTRFESLKIYRDSL FT GEAVMRMGDLHYLQSRNEKWREQLGQKFEEIRWLIEEIRQRLKTTENSFEQITFMQALQ FT LLLEVEQEIRAFSFQLI" FT gene 15..674 FT /gene="NS1" FT CDS 15..674 FT /codon_start=1 FT /gene="NS1" FT /product="nonstructural protein 1" FT /protein_id="QIJ23765.1" FT /translation="MESNTMSSFQVDCFLWHIRKRFADNGLGDAPFLDRLRRDQKSLKG FT RGNTLGLDVKTATLVGKQIVEWILKEESSETLRMTIASVPTSRYISDMTLEEMSRDWFM FT LMPRQKMIGPLCVRLDQAVMDKNIVLEANFSVIFNRLETLILLRAFTEEGAIVGEISPL FT PSLPGHTYEDVKNAVGVLIGGLEWNGNTVRVSENIQRFAWRSCDENGRPSLPPEQK" XX SQ Sequence 865 BP; 278 A; 164 C; 208 G; 215 T; 0 other; gtgacaaaaa cataatggaa tccaacacca tgtcaagctt tcaggtagac tgttttcttt 60 ggcatattcg caagcgattt gcagacaatg gattgggtga tgccccattc cttgatcggc 120 tacgccgaga tcaaaagtcc ttaaaaggaa gaggcaacac ccttggcctc gacgtcaaaa 180 cagccactct tgttgggaaa caaattgtgg aatggatttt gaaagaggaa tccagcgaga 240 cacttagaat gacaattgca tctgtaccta cttcgcgtta catttctgac atgaccctcg 300 aggaaatgtc acgagactgg ttcatgctta tgcctaggca aaagatgata ggccctcttt 360 gcgtgcgatt ggaccaggcg gtcatggata agaacatagt actggaagca aacttcagtg 420 taatcttcaa ccgattagag accttgatac tactaagggc tttcactgag gagggagcaa 480 tagttggaga aatttcacca ttaccttctc ttccaggaca tacttatgag gatgtcaaaa 540 atgcagttgg ggtcctcatc ggaggacttg agtggaatgg taacacggtt cgagtctctg 600 aaaatataca gagattcgct tggagaagct gtgatgagaa tgggagacct tcactacctc 660 cagagcagaa atgagaagtg gcgggaacaa ttgggacaga aatttgagga aataaggtgg 720 ttaattgaag aaatacgaca gaggttgaaa acgacagaga atagtttcga acaaataaca 780 tttatgcaag ccttacaact actgcttgaa gtagagcaag agataagagc tttctcgttt 840 cagcttattt aatgataaaa aacac 865 // ID MT167254; SV 1; linear; viral cRNA; STD; VRL; 2316 BP. XX AC MT167254; XX PR Project:PRJNA37813; XX DT 17-MAR-2020 (Rel. 144, Created) DT 17-MAR-2020 (Rel. 144, Last updated, Version 1) XX DE Influenza A virus (A/Arkansas/03/2020(H1N1)) segment 1 polymerase PB2 (PB2) DE gene, complete cds. XX KW . XX OS Influenza A virus OC Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Insthoviricetes; OC Articulavirales; Orthomyxoviridae; Alphainfluenzavirus. XX RN [1] RP 1-2316 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT "Influenza Sequencing Activity group"; RL Unpublished. XX RN [2] RP 1-2316 RA Jernigan D., Wentworth D., Barnes J., Garten R., Xu X.; RT ; RL Submitted (09-MAR-2020) to the INSDC. RL WHO Collaborating Center for Surveillance, Epidemiology and Control of RL Influenza, Influenza Division, Centers for Disease Control and Prevention, RL 1600 Clifton Road, N.E., Atlanta, GA 30333, USA XX DR MD5; 86cba3f2ee6e897b3d4112c7fd02d7a1. XX CC ##FluData-START## CC EPI_ISOLATE_ID :: EPI_ISL_409177 CC NAME :: A/Arkansas/03/2020 CC TYPE :: H1N1 CC Segment_name :: PB2 CC HOST_AGE :: 23 CC HOST_GENDER :: F CC PASSAGE :: Original CC LOCATION :: United States / Arkansas CC COLLECT_DATE :: 05-Jan-2020 CC Lineage :: A(H1N1)pdm09 CC SPECIMEN_ID :: 1933800000-120 ORIGINAL CC SENDER_LAB :: Arkansas Department of Health CC SEQLAB_SAMPLE_ID :: 3026054564 CC EPI_SEQUENCE_ID :: EPI1684266 CC ##FluData-END## XX FH Key Location/Qualifiers FH FT source 1..2316 FT /organism="Influenza A virus" FT /segment="1" FT /host="Homo sapiens" FT /strain="A/Arkansas/03/2020" FT /serotype="H1N1" FT /mol_type="viral cRNA" FT /country="USA:Arkansas" FT /collection_date="05-Jan-2020" FT /db_xref="taxon:11320" FT gene 16..2295 FT /gene="PB2" FT CDS 16..2295 FT /codon_start=1 FT /gene="PB2" FT /product="polymerase PB2" FT /protein_id="QIJ23767.1" FT /translation="MERIKELRDLMSQSRTREILTKTTVDHMAIIKKYTSGRQEKNPAL FT RMKWMMAMKYPITADKRIMDIIPERNEQGQTLWSKINDAGSDRVMVSPLAVTWWNRNGP FT TTSTVHYPKVYKTYFEKVERLKHGTFGPVHFRNQVKIRRRVDTNPGHADLSAKEAQDVI FT MEVVFPNEVGARILTSESQLAITKEKKEELQNCKIAPLMVAYMLERELVRKTRFLPVAG FT GTSSVYIEVLHLTQGTCWEQMYTPGGEVRNDDVDQSLIIAARNIVRRAAVSADPLASLL FT EMCHSTQIGGVKMVDILKQNPTEEQAVDICKAAIGLRISSSFSFGGFTFKRTSGSSVKK FT EEEMLTGNLQTLKLRVHEGYEEFTMVGRRATAILRKATRRLIQLIVSGRDEQSIAEAII FT VAMVFSQEDCMIKAVRGDLNFVNRANQRLNPMHQLLRHFQKDAKVLFQNWGIETIDNVM FT GMIGILPDMTPSTEMSLRGIRVSKMGVDEYSSTERVVVSIDRFLRVRDQRGNVLLSPEE FT VSETQGTEKLTITYSSSMMWEINGPESVLVNTYQWIIRNWEIVKIQWSQDPTMLYNKME FT FEPFQSLVPKATRSRYSGFVRTLFQQMRDVLGTFDTVQIIKLLPFAAAPPEQSRMQFSS FT LTVNVRGSGLRILVRGNSPVFNYNKATKRLTILGKDAGALTEDPDEGTSGVESAVLRGF FT LILGKEDKRYGPALSINELSNLAKGEKANVLIGQGDIVLVMKRKRDSSILTDSQTATKR FT IRMAIN" XX SQ Sequence 2316 BP; 793 A; 432 C; 584 G; 507 T; 0 other; tcaaatatat tcaatatgga gagaataaaa gagctgagag atctaatgtc gcagtcccgc 60 actcgcgaga tactcactaa gaccactgtg gaccatatgg ccatcatcaa aaagtacaca 120 tcgggaaggc aagagaagaa ccccgcgctc agaatgaagt ggatgatggc aatgaaatac 180 ccaattacgg cagacaagag aataatggac ataatcccag agaggaatga acaaggacaa 240 accctctgga gcaaaataaa cgatgctgga tcagaccgag tgatggtatc acctctggca 300 gtaacatggt ggaataggaa tggtccaaca acaagtacag ttcattaccc taaggtatat 360 aaaacttatt tcgaaaaggt cgaaaggttg aaacatggta ccttcggccc tgtccacttc 420 agaaatcaag ttaaaataag gaggagagtt gatacaaacc ctggccatgc agatctcagt 480 gccaaggagg cacaggatgt gattatggaa gttgttttcc caaatgaagt gggggcaaga 540 atactgacat cagagtcaca gctggcaata acaaaagaga agaaagaaga gctccagaat 600 tgtaaaattg ctcccttgat ggtggcgtac atgctagaaa gagaattggt ccgtaaaaca 660 aggtttctcc cggtagccgg tgggacaagc agtgtttata ttgaggtgtt gcacttgacc 720 caagggactt gctgggagca gatgtacact ccaggaggag aagtgagaaa tgatgatgtt 780 gaccaaagct tgattatcgc tgctagaaac atagtaagaa gagcagcagt gtcagcagac 840 ccattagcat ctctcttgga aatgtgccac agcacacaga ttggaggtgt gaagatggtg 900 gacatcctta aacagaatcc aactgaggag caagccgtag acatatgcaa ggcagcaata 960 gggttgagga tcagctcatc tttcagtttt ggtgggttca ctttcaaaag gacaagcgga 1020 tcatcagtca agaaagaaga agaaatgcta acgggcaacc tccaaacact gaaattaaga 1080 gtacatgaag ggtatgaaga attcacaatg gttgggagaa gagcaacagc tattctcaga 1140 aaggcaacca ggagattgat ccaattaata gtaagcggga gagacgagca gtcaatagct 1200 gaagcaataa ttgtggccat ggtattctca caagaggatt gcatgatcaa agcagttagg 1260 ggcgatctga actttgtcaa tagggcaaac cagagactga atcccatgca ccaactcttg 1320 aggcatttcc aaaaagatgc aaaagtgctt ttccagaact ggggaattga aaccatcgac 1380 aatgtgatgg gaatgatcgg aatactgccc gacatgaccc caagtacgga gatgtcactg 1440 agaggaataa gagtcagcaa gatgggagta gatgaatact ccagcacgga gagagtggta 1500 gtgagtattg accgattttt gagggttaga gatcaaagag gaaacgtact gttgtctccc 1560 gaagaagtta gtgaaacgca aggaactgag aagttaacaa taacttattc gtcatcaatg 1620 atgtgggaga tcaacggccc tgagtcagtg ctagtcaaca cttatcaatg gataatcaga 1680 aactgggaaa ttgtgaaaat tcaatggtca caagacccca caatgttata caacaaaatg 1740 gaatttgaac catttcagtc tcttgttcct aaggcaacca gaagccggta cagtggattc 1800 gtaaggacac tgttccagca aatgagggat gtgcttggga catttgacac tgttcaaata 1860 ataaaacttc tcccctttgc tgctgctcca ccagaacaga gcaggatgca attttcttca 1920 ttgactgtga atgtgagagg atcagggtta aggatactgg taagaggcaa ttctccagta 1980 ttcaattac