------------------------------------------------------------------------------ SWISS-PROT Protein Sequence Data Bank. Release 36.0, July 1998 ------------------------------------------------------------------------------ List of aminoacyl-tRNA synthetases ------------------------------------------------------------------------------ Amos Bairoch Email: bairoch@medecine.unige.ch Swiss Institute of Bioinformatics and University of Geneva Switzerland ------------------------------------------------------------------------------ Document name: AATRNASY.TXT ------------------------------------------------------------------------------ This document list the SWISS-PROT sequence entries for the twenty types of aminoacyl-transfer RNA synthetases. It also indicates to what sequence class (I or II) each type belongs to and whether or not a 3D structure has been solved for at least one member of a specific type of aa-tRNA synthetases. ----------------------------------------------------------------------- Alanyl-tRNA synthetases (EC 6.1.1.7) Class: II 3D known: No SYAC_SCHPO (O13914), SYAC_YEAST (P40825), SYA_ARATH (P36428), SYA_ARCFU (O28029), SYA_BACSU (O34526), SYA_BARBA (P70865), SYA_BOMMO (P21894), SYA_ECOLI (P00957), SYA_HAEIN (P43815), SYA_HELPY (P56452), SYA_HUMAN (P49588), SYA_METJA (Q57984), SYA_METTH (O27718), SYA_MYCGE (P47534), SYA_MYCPN (P75368), SYA_MYCTU (O07438), SYA_RAT (P50475), SYA_RHILV (P24075), SYA_RHIME (P27866), SYA_SULSO (P35029), SYA_SYNY3 (P74423), SYA_THETH (P74941), SYA_THIFE (Q56273), SYA_VIBCH (Q56648) ----------------------------------------------------------------------- Cysteinyl-tRNA synthetases (EC 6.1.1.16) Class: I 3D known: No SYC_ARCFU (O29836), SYC_AZOBR (O07045), SYC_BACSU (Q06752), SYC_BUCAP (P46241), SYC_ECOLI (P21888), SYC_HAEIN (P43816), SYC_HELPY (P41259), SYC_HUMAN (P49589), SYC_MYCGE (P47495), SYC_MYCPN (P75423), SYC_MYCTU (P96862), SYC_STAXY (P77986), SYC_SYNY3 (P74330), YAF6_SCHPO (Q09860), YNY7_YEAST (P53852) ----------------------------------------------------------------------- Aspartyl-tRNA synthetases (EC 6.1.1.12) Class: II 3D known: Yes SYDC_YEAST (P04802), SYDM_YEAST (P15179), SYD_ARCFU (O29342), SYD_BACSU (O32038), SYD_CAEEL (Q03577), SYD_ECOLI (P21889), SYD_HAEIN (P43817), SYD_HALSA (O07683), SYD_HALVO (O24822), SYD_HELPY (P56459), SYD_HUMAN (P14868), SYD_METJA (Q58950), SYD_METTH (O26328), SYD_MYCCA (Q48979), SYD_MYCGE (P47282), SYD_MYCLE (P36429), SYD_MYCPN (P75068), SYD_MYCTU (Q50649), SYD_PSEAE (Q51422), SYD_PYRSK (Q52428), SYD_RAT (P15178), SYD_SYNY3 (P73851), SYD_THETH (P36419) ----------------------------------------------------------------------- Glutamyl-tRNA synthetases (EC 6.1.1.17) Class: I 3D known: Yes SYEC_YEAST (P46655), SYEM_YEAST (P48525), SYEP_DROME (P28668), SYEP_HUMAN (P07814), SYE_ARCFU (O29979), SYE_AZOBR (P45631), SYE_BACST (P22249), SYE_BACSU (P22250), SYE_CHLPS (Q06560), SYE_ECOLI (P04805), SYE_HAEIN (P43818), SYE_HELPY (P96551), SYE_HORVU (Q43768), SYE_METJA (Q58772), SYE_METTH (O26157), SYE_METTM (Q50543), SYE_MYCGE (P47700), SYE_MYCPN (P75114), SYE_MYCPU (P53662), SYE_RHIME (P15189), SYE_SULSO (P95968), SYE_SYNP2 (P31970), SYE_SYNY3 (Q55778), SYE_THETH (P27000), SYE_TOBAC (Q43794) ----------------------------------------------------------------------- Phenylalanyl-tRNA synthetases (EC 6.1.1.20) Class: II 3D known: Yes SYFA_BACSU (P17921), SYFA_BORBU (P94282), SYFA_ECOLI (P08312), SYFA_HAEIN (P43819), SYFA_HELPY (P56146), SYFA_MYCGE (P47436), SYFA_MYCPN (P75564), SYFA_SYNY3 (Q55187), SYFA_THETH (P27001), SYFA_YEAST (P15624), SYFB_BACSU (P17922), SYFB_ECOLI (P07395), SYFB_ERWCH (P37984), SYFB_HAEIN (P43820), SYFB_HELPY (P56145), SYFB_MYCGE (P47437), SYFB_MYCPN (P75563), SYFB_MYCTU (P94985), SYFB_PORPU (P51346), SYFB_SALTY (P15434), SYFB_SYNP7 (P74764), SYFB_SYNY3 (P74296), SYFB_THETH (P27002), SYFB_YEAST (P15625), SYFM_YEAST (P08425), SYF_METJA (Q57911), SYF_SULSO (P95961) ----------------------------------------------------------------------- Glycyl-tRNA synthetases (EC 6.1.1.14) Class: II 3D known: Yes SYGA_BACSU (P54380), SYGA_ECOLI (P00960), SYGA_HAEIN (P43821), SYGA_HELPY (P56453), SYGA_MORCA (P77892), SYGA_SYNY3 (Q55716), SYGB_BACSU (P54381), SYGB_COXBU (P45651), SYGB_ECOLI (P00961), SYGB_HAEAE (O30836), SYGB_HAEIN (P43822), SYGB_HELPY (P56454), SYGB_MORCA (P77891), SYGB_NEIGO (Q50945), SYGB_SYNY3 (Q55690), SYG_ARATH (O23627), SYG_ARCFU (O29346), SYG_BOMMO (Q04451), SYG_CAEEL (Q10039), SYG_CHLTR (Q46371), SYG_HUMAN (P41250), SYG_METJA (Q57681), SYG_METTH (O27874), SYG_MYCGE (P47493), SYG_MYCPN (P75425), SYG_SCHPO (Q10179), SYG_THETH (P56206), SYG_YEAST (P38088) ----------------------------------------------------------------------- Histidyl-tRNA synthetases (EC 6.1.1.21) Class: II 3D known: Yes SYH1_SYNY3 (Q55653), SYH2_SYNY3 (P74592), SYHH_HUMAN (P49590), SYH_ARCFU (O28631), SYH_BACSU (O32039), SYH_CAEEL (P34183), SYH_ECOLI (P04804), SYH_FUGRU (P70076), SYH_HAEIN (P43823), SYH_HELPY (P56455), SYH_HUMAN (P12081), SYH_MESAU (P07178), SYH_METJA (Q58406), SYH_METTH (O26346), SYH_MOUSE (Q61035), SYH_MYCGE (P47281), SYH_MYCLE (P46696), SYH_MYCPN (P75069), SYH_MYCTU (Q50641), SYH_PORPU (P51348), SYH_STREQ (P30053), SYH_SULSH (P46220), SYH_SYNP7 (Q55267), SYH_THETH (P56194), SYH_YEAST (P07263) ----------------------------------------------------------------------- Isoleucyl-tRNA synthetases (EC 6.1.1.5) Class: I 3D known: No SYIC_SCHPO (O13651), SYIC_YEAST (P09436), SYIM_YEAST (P48526), SYIP_STAAU (P41368), SYI_AQUPY (P46207), SYI_ARCFU (O29622), SYI_BACSU (Q45477), SYI_CAEEL (Q21926), SYI_CAMJE (P41257), SYI_CIOIN (Q94425), SYI_ECOLI (P00956), SYI_ENTAE (P13502), SYI_HAEIN (P43824), SYI_HELPY (P56456), SYI_HUMAN (P41252), SYI_METJA (Q58357), SYI_METTH (O27428), SYI_METTM (P26499), SYI_MYCGE (P47587), SYI_MYCPN (P75258), SYI_MYCTU (Q10765), SYI_NOSLO (Q27707), SYI_PSEFL (P18330), SYI_PYRFU (P46214), SYI_STAAU (P41972), SYI_SULAC (P46215), SYI_SYNY3 (P73505), SYI_TETTH (P36422), SYI_THEMA (P46213) ----------------------------------------------------------------------- Lysyl-tRNA synthetases (EC 6.1.1.6) Class: II and I (in some archebacteria) 3D known: Yes SYK1_ECOLI (P13030), SYK1_SALTY (P28354), SYK2_ECOLI (P14825), SYK3_ECOLI (P03812), SYK3_HAEIN (P43826), SYKC_YEAST (P15180), SYKM_YEAST (P32048), SYK_ACICA (Q43990), SYK_ARCFU (O29052), SYK_BACSU (P37477), SYK_CAEEL (Q22099), SYK_CAMJE (P41258), SYK_CRILO (P37879), SYK_HAEIN (P43825), SYK_HELPY (P56126), SYK_HUMAN (Q15046), SYK_LYCES (Q43776), SYK_METJA (Q57959), SYK_METMP (O30522), SYK_METTH (O27585), SYK_MYCFE (Q49158), SYK_MYCGE (P47382), SYK_MYCHO (P46191), SYK_MYCLE (P46861), SYK_MYCPN (P75500), SYK_MYCTU (O06284), SYK_STAAU (Q53638), SYK_SULSO (P95970), SYK_SYNY3 (P73443), SYK_THETH (P41255) ----------------------------------------------------------------------- Leucyl-tRNA synthetases (EC 6.1.1.4) Class: I 3D known: No SYLC_CAEEL (Q09996), SYLC_NEUCR (P10857), SYLC_SCHPO (Q10490), SYLC_YEAST (P26637), SYLM_HUMAN (Q15031), SYLM_NEUCR (P15181), SYLM_SACDO (P13503), SYLM_SCHPO (Q09828), SYLM_YEAST (P11325), SYL_ARCFU (O30250), SYL_BACSU (P36430), SYL_ECOLI (P07813), SYL_HAEIN (P43827), SYL_HELPY (P56457), SYL_METJA (Q58050), SYL_METTH (O27552), SYL_MYCGE (P47508), SYL_MYCLE (Q50192), SYL_MYCPN (P75398), SYL_MYCTU (P71698), SYL_SYNY3 (P73274) ----------------------------------------------------------------------- Methionyl-tRNA synthetases (EC 6.1.1.10) Class: I 3D known: Yes SYMC_YEAST (P00958), SYMM_YEAST (P22438), SYM_ARCFU (O28819), SYM_BACST (P23920), SYM_BACSU (P37465), SYM_ECOLI (P00959), SYM_HAEIN (P43828), SYM_HELPY (P56127), SYM_HUMAN (P56192), SYM_METJA (Q58659), SYM_METTH (O26687), SYM_MYCGE (P47267), SYM_MYCPN (P75091), SYM_MYCPU (Q50319), SYM_MYCTU (O05593), SYM_SYNY3 (Q55729), SYM_THETH (P23395) ----------------------------------------------------------------------- Asparaginyl-tRNA synthetases (EC 6.1.1.22) Class: II 3D known: No SYNC_SACDO (P41908), SYNC_YEAST (P38707), SYNM_YEAST (P25345), SYN_BACSU (P39772), SYN_BRUMA (P10723), SYN_CAEEL (Q19722), SYN_ECOLI (P17242), SYN_HAEIN (P43829), SYN_LACDE (P54262), SYN_MYCGE (P47359), SYN_MYCPN (P75521), SYN_SALTI (Q56112), SYN_SYNY3 (P52276), SYN_THETH (P54263) ----------------------------------------------------------------------- Prolyl-tRNA synthetases (EC 6.1.1.15) Class: II 3D known: No SYEP_DROME (P28668), SYEP_HUMAN (P07814), SYPC_CANAL (P78600), SYPC_YEAST (P39965), SYP_ARCFU (O28664), SYP_CHLTR (P36431), SYP_ECOLI (P16659), SYP_HAEIN (P43830), SYP_HELPY (P56124), SYP_METJA (Q58635), SYP_METTH (O26708), SYP_MYCGE (P47525), SYP_MYCPN (P75382), SYP_MYCTU (O05814), SYP_SYNY3 (P73942), SYP_ZYMMO (P75000), YHI0_YEAST (P38708) ----------------------------------------------------------------------- Glutaminyl-tRNA synthetases (EC 6.1.1.18) Class: I 3D known: Yes SYQ_DICDI (P14325), SYQ_ECOLI (P00962), SYQ_HAEIN (P43831), SYQ_HUMAN (P47897), SYQ_LUPLU (P52780), SYQ_YEAST (P13188) ----------------------------------------------------------------------- Arginyl-tRNA synthetases (EC 6.1.1.19) Class: I 3D known: No SYRC_YEAST (Q05506), SYRM_YEAST (P38714), SYR_ARCFU (O29368), SYR_BACSU (P46906), SYR_BRELA (P41253), SYR_BUCAP (Q08888), SYR_CAEEL (Q19825), SYR_CORGL (P35868), SYR_CRILO (P37880), SYR_ECOLI (P11875), SYR_HAEIN (P43832), SYR_HELPY (P56128), SYR_HUMAN (P54136), SYR_METJA (Q57689), SYR_METTH (O27496), SYR_MYCGE (P47618), SYR_MYCLE (P45840), SYR_MYCPN (P75222), SYR_MYCTU (Q10609), SYR_RAT (P40329), SYR_SALTY (P74871), SYR_SYNY3 (Q55486) ----------------------------------------------------------------------- Seryl-tRNA synthetases (EC 6.1.1.11) Class: II 3D known: Yes SYSC_SCHPO (O14018), SYSC_YEAST (P07284), SYS_ARATH (Q39230), SYS_ARCFU (O28244), SYS_BACSU (P37464), SYS_CAEEL (Q18678), SYS_COXBU (P39919), SYS_CRIGR (P26636), SYS_ECOLI (P09156), SYS_HAEIN (P43833), SYS_HALMA (P54221), SYS_HELPY (P56458), SYS_HUMAN (P49591), SYS_METJA (Q58477), SYS_METMP (O30520), SYS_METTH (O27194), SYS_MOUSE (P26638), SYS_MYCGE (P47251), SYS_MYCPN (P75107), SYS_STAAU (P95689), SYS_SYNY3 (P73201), SYS_THETH (P34945), YHH1_YEAST (P38705) ----------------------------------------------------------------------- Threonyl-tRNA synthetases (EC 6.1.1.3) Class: II 3D known: No SYT1_BACSU (P18255), SYT2_BACSU (P18256), SYTC_ARATH (O04630), SYTC_CAEEL (P52709), SYTC_HUMAN (P26639), SYTC_SCHPO (P87144), SYTC_YEAST (P04801), SYTM_SCHPO (O13969), SYTM_YEAST (P07236), SYT_ARCFU (O29703), SYT_BUCAP (P46244), SYT_ECOLI (P00955), SYT_HAEIN (P43014), SYT_HELPY (P56071), SYT_METJA (Q58597), SYT_METTH (O27504), SYT_MYCGE (P47615), SYT_MYCLE (O07151), SYT_MYCPN (P75225), SYT_MYCTU (O06200), SYT_PSESY (P52833), SYT_RICPR (O05947), SYT_SYNY3 (Q55806) ----------------------------------------------------------------------- Valyl-tRNA synthetases (EC 6.1.1.9) Class: I 3D known: No SYV_ARATH (P93736), SYV_ARCFU (O28059), SYV_BACST (P11931), SYV_BACSU (Q05873), SYV_ECOLI (P07118), SYV_FUGRU (P49696), SYV_HAEIN (P43834), SYV_HAEPA (P36432), SYV_HELPY (P56000), SYV_HUMAN (P26640), SYV_LACCA (P36420), SYV_METJA (Q58413), SYV_METTH (O26861), SYV_MYCGE (P47576), SYV_MYCPN (P75304), SYV_NEUCR (P28350), SYV_RAT (Q04462), SYV_STRCO (O06851), SYV_SYNY3 (Q55522), SYV_THETH (P96142), SYV_TRIVA (P46216), SYV_YEAST (P07806) ----------------------------------------------------------------------- Tryptophanyl-tRNA synthetases (EC 6.1.1.2) Class: I 3D known: Yes SYWC_YEAST (Q12109), SYWM_CAEEL (P46579), SYWM_YEAST (P04803), SYW_ARCFU (O28579), SYW_BACST (P00953), SYW_BACSU (P21656), SYW_BOVIN (P17248), SYW_CLOLO (Q46127), SYW_ECOLI (P00954), SYW_HAEIN (P43835), SYW_HELPY (P56396), SYW_HUMAN (P23381), SYW_METJA (Q58810), SYW_METTH (O26352), SYW_MOUSE (P32921), SYW_MYCGE (P47372), SYW_MYCLE (Q49901), SYW_MYCPN (P75510), SYW_RABIT (P23612), SYW_SCHPO (Q09692), SYW_SYNY3 (P73655) ----------------------------------------------------------------------- Tyrosyl-tRNA synthetases (EC 6.1.1.1) Class: I 3D known: Yes SYY1_BACSU (P22326), SYY2_BACSU (P25151), SYYC_SCHPO (O14055), SYYC_YEAST (P36421), SYYM_NEUCR (P12063), SYYM_PODAN (P28669), SYYM_YEAST (P48527), SYY_ARCFU (O29482), SYY_BACCA (P04077), SYY_BACST (P00952), SYY_BOVIN (Q29465), SYY_ECOLI (P00951), SYY_HAEIN (P43836), SYY_HELPY (P56417), SYY_HUMAN (P54577), SYY_METJA (Q57834), SYY_METTH (O27795), SYY_MYCGE (P47693), SYY_MYCPN (P75122), SYY_SULSO (P95982), SYY_SYNY3 (P73141), SYY_THIFE (P41256) -----------------------------------------------------------------------