------------------------------------------------------------------------------ SWISS-PROT Protein Sequence Data Bank. Release 36.0, July 1998 ------------------------------------------------------------------------------ Nomenclature and index of allergen sequences ------------------------------------------------------------------------------ Amos Bairoch Email: bairoch@medecine.unige.ch Swiss Institute of Bioinformatics and University of Geneva Switzerland ------------------------------------------------------------------------------ Document name: ALLERGEN.TXT ------------------------------------------------------------------------------ A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans: WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. ACI News 6/2:38-44(1994). IUIS/WHO Allergen Nomenclature Subcommittee. Bull. World Health Organ. 72:797-806(1994). This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. We have fully implemented this nomenclature system in SWISS-PROT. For some general information on allergy and allergen see: http://www.hon.ch/Library/Theme/Allergy/Glossary/allergy.html Allergen SWISS-PROT entries ----------- ------------------------------------------------------------ Aln g 1 MPAG_ALNGL Alt a 6 RLA2_ALTAL Alt a 7 ALA7_ALTAL Alt a 10 DHAL_ALTAL Alt a 12 RLA1_ALTAL Amb a 1 MP11_AMBAR, MP12_AMBAR, MP13_AMBAR, MP14_AMBAR Amb a 2 MPA2_AMBAR Amb a 3 MPA3_AMBEL Amb a 5 MPA5_AMBEL Amb p 5 MP5A_AMBPS, MP5B_AMBPS Amb t 5 MPT5_AMBTR Api g 1 MPAG_APIGR Api m 1 PA2_APIME Api m 2 HUGA_APIME Api m 3 MEL1_APIME Ara h 1 AH11_ARAHY, AH12_ARAHY Asp f 1 RNMG_ASPRE Asp f 2 MAF2_ASPFU Bet v 1 BV1A_BETVE, BV1C_BETVE, BV1D_BETVE, BV1E_BETVE, BV1F_BETVE, BV1G_BETVE, BV1J_BETVE, BV1K_BETVE, BV1L_BETVE, BV1M_BETVE Bet v 2 PROF_BETVE Bet v 3 BTV3_BETVE Bla g 2 ASP2_BLAGE Bla g 4 BLG4_BLAGE Blo t 12 BT12_BLOTA Bra j 1 ALL1_BRAJU Can a 1 ADH1_CANAL Can f 1 ALL1_CANFA Can f 2 ALL2_CANFA Car b 1 MPA1_CARBE, MPA2_CARBE Cla h 3 DHAL_CLAHE Cla h 3 RLA3_CLAHE Cla h 4 HS70_CLAHE Cla h 4 RLA4_CLAHE Cla h 5 CLH5_CLAHE Cla h 6 ENO_CLAHE Cla h 12 RLA1_CLAHE Cor a 1 MPAA_CORAV Cry j 1 SBP_CRYJA Cry j 2 MPA2_CRYJA Dac g 2 MPG2_DACGL Der f 1 MMAL_DERFA Der f 2 DEF2_DERFA Der f 3 DEF3_DERFA Der f 6 DEF6_DERFA Der f 7 DEF7_DERFA Der m 1 MMAL_DERMI Der p 1 MMAL_DERPT Der p 2 DER2_DERPT Der p 3 DER3_DERPT Der p 4 AMY_DERPT Der p 5 DER5_DERPT Der p 6 DER6_DERPT Der p 7 DER7_DERPT Dol a 5 VA5_DOLAR Dol m 1 PA11_DOLMA, PA12_DOLMA Dol m 2 HUGA_DOLMA Dol m 5 VA52_DOLMA, VA53_DOLMA Equ c 1 ALL1_HORSE Equ c 2 AL21_HORSE, AL22_HORSE Eur m 1 EUM1_EURMA Fel d 1 FELA_FELCA, FELB_FELCA, FEL2_FELCA Gad c 1 PRVB_GADCA Gal d 1 IOVO_CHICK Gal d 2 OVAL_CHICK Gal d 3 TRFE_CHICK Gal d 4 LYC_CHICK Hev b 1 REF_HEVBR Hol l 1 MPH1_HOLLA Hor v 1 IAA1_HORVU Lep d 1 LEP1_LEPDS Lol p 1 MPL1_LOLPR Lol p 2 MPL2_LOLPR Lol p 3 MPL3_LOLPR Lol p 5 MP5A_LOLPR, MP5B_LOLPR Mal d 1 MAL1_MALDO Myr p 1 MYR1_MYRPI Myr p 2 MYR2_MYRPI Ole e 1 ALL1_OLEEU Ole e 4 ALL4_OLEEU Ole e 5 SODC_OLEEU Ory s 1 MPO1_ORYSA Par j 1 NLTP_PARJU, NLTQ_PARJU Par j 2 NLT2_PARJU Pha a 1 MPA1_PHAAQ Pha a 5 MP51_PHAAQ, MP52_PHAAQ, MP53_PHAAQ, MP54_PHAAQ Phl p 1 MPP1_PHLPR Phl p 2 MPP2_PHLPR Phl p 5 MP5A_PHLPR, MP5B_PHLPR Phl p 6 MPP6_PHLPR Phl p 11 PROF_PHLPR Poa p 9 MP91_POAPR, MP92_POAPR, MP93_POAPR Pol a 5 VA5_POLAN Pol e 5 VA5_POLEX Pol f 5 VA5_POLFU Rat n 1 TTHY_RAT Sin a 1 ALL1_SINAY Sol i 2 VA2_SOLIN Sol i 3 VA3_SOLIN Sol i 4 VA4_SOLIN Sol r 2 VA2_SOLRI Sol r 3 VA3_SOLRI Ves c 5 VA51_VESCR, VA52_VESCR Ves f 5 VA5_VESFL Ves g 5 VA5_VESGE Ves m 1 PA1_VESMC Ves m 5 VA5_VESMC Ves p 5 VA5_VESPE Ves s 5 VA5_VESSQ Ves v 1 PA1_VESVU Ves v 2 HUGA_VESVU Ves v 5 VA5_VESVU Ves vi 5 VA5_VESVI Zea m 1 MPZ1_MAIZE