------------------------------------------------------------------------------ SWISS-PROT Protein Sequence Data Bank. Release 36.0, July 1998 ------------------------------------------------------------------------------ Index of Helicobacter pylori strain 26695 chromosomal entries ------------------------------------------------------------------------------ Amos Bairoch Email: bairoch@medecine.unige.ch Swiss Institute of Bioinformatics and University of Geneva Switzerland ------------------------------------------------------------------------------ Document name: HPYLORI.TXT ------------------------------------------------------------------------------ The complete genome (1'667'867 base pairs) of Helicobacter pylori strain 26695 chromosomal entries has been determined by the Institute of Genomic Research (TIGR). See: Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G. et al. Nature 388:539-547(1997). Various types of information about this genome can be found on the following WWW servers: TIGR: http://www.tigr.org/tdb/mdb/hpdb/hpdb.html PEDANT: http://pedant.mips.biochem.mpg.de/frishman/hp.html GN (MPIMG): http://www.mpimg-berlin-dahlem.mpg.de/~andy/GN/H.pylori/ [Warning this is a preliminary version of this document, not all H.pylori genome open reading frames are yet incorporated into SWISS-PROT] Open reading SWISS-PROT Sequence Gene name frame Entry name AC Length and synonyms ------------ ---------- ------ -------- ------------ HP0003 KDSA_HELPY P56060 276 kdsA HP0005 DCOP_HELPY P56155 227 pyrF HP0006 PANC_HELPY P56061 276 panC HP0010 CH60_HELPY P42383 546 groEL; hsp60; hspB HP0011 CH10_HELPY P48225 118 groES; hsp10; hspA HP0012 PRIM_HELPY P56064 559 dnaG HP0026 CISY_HELPY P56062 426 gltA HP0027 IDH_HELPY P56063 425 icd HP0032 Y032_HELPY P56066 91 HP0034 PAND_HELPY P56065 117 panD HP0067 UREH_HELPY Q09067 265 ureH HP0068 UREG_HELPY Q09066 199 ureG HP0069 UREF_HELPY Q09065 254 ureF HP0070 UREE_HELPY Q09064 170 ureE HP0071 UREI_HELPY Q09068 195 ureI HP0072 URE2_HELPY P14917 569 ureB; hpuB HP0073 URE1_HELPY P14916 238 ureA; hpuA HP0074 LSPA_HELPY P25178 157 lspA; ureD HP0075 UREC_HELPY P25177 445 ureC HP0076 RS20_HELPY P56027 89 rpsT HP0077 RF1_HELPY P55998 352 prfA HP0083 RS9_HELPY P56016 129 rpsI HP0084 RL13_HELPY P56038 141 rplM HP0088 RPSD_HELPY P55993 671 rpoD HP0089 PFS_HELPY O24915 231 pfs HP0106 METB_HELPY P56069 380 metB HP0107 CYSK_HELPY P56067 306 cysK HP0109 DNAK_HELPY P55994 620 dnaK HP0110 GRPE_HELPY P55970 189 grpE HP0115 FLAB_HELPY Q07911 514 flaB HP0116 TOP1_HELPY P55991 736 topA HP0117 Y117_HELPY P56080 308 HP0121 PPSA_HELPY P56070 812 ppsA HP0123 SYT_HELPY P56071 612 thrS HP0124 IF3_HELPY P55973 203 infC HP0125 RL35_HELPY P56057 64 rpmI HP0126 RL20_HELPY P56045 116 rplT HP0132 SDHL_HELPY P56072 455 sdaA HP0136 BCP_HELPY P55979 152 bcp HP0153 RECA_HELPY P42445 347 recA HP0154 ENO_HELPY P48285 426 eno HP0157 AROK_HELPY P56073 162 aroK HP0163 HEM2_HELPY P56074 323 hemB HP0169 Y169_HELPY P56113 422 HP0171 RF2_HELPY P55999 363 prfB HP0175 Y175_HELPY P56112 299 HP0176 ALF_HELPY P56109 307 fba HP0177 EFP_HELPY P56004 187 efp HP0182 SYK_HELPY P56126 501 lysS HP0183 GLYA_HELPY P56089 416 glyA HP0190 Y190_HELPY P56117 502 HP0191 FRDB_HELPY O06914 245 frdB HP0192 FRDA_HELPY O06913 714 frdA HP0193 FRDC_HELPY O06912 255 frdC HP0194 TPIS_HELPY P56076 234 tpiA; tpi HP0197 METK_HELPY P56460 385 metK HP0198 NDK_HELPY P56075 137 ndk HP0200 RL32_HELPY P56054 48 rpmF HP0207 MRP_HELPY O24999 412 mrp HP0210 HTPG_HELPY P56116 621 htpG HP0213 GIDA_HELPY P56138 621 gidA HP0215 CDSA_HELPY O25004 266 cdsA HP0216 Y216_HELPY P56139 368 HP0223 RADA_HELPY P56148 456 radA; sms HP0237 HEM3_HELPY P56140 306 hemC HP0238 SYP_HELPY P56124 577 proS HP0239 HEM1_HELPY P56125 449 hemA HP0243 NAPA_HELPY P43313 144 napA HP0255 PURA_HELPY P56137 411 purA HP0258 Y258_HELPY P56136 348 HP0262 Y262_HELPY O25042 200 HP0264 CLPB_HELPY P71404 856 clpB HP0269 Y269_HELPY P56131 437 HP0274 Y274_HELPY P56132 132 HP0281 TGT_HELPY O08314 371 tgt HP0283 AROB_HELPY P56081 343 aroB HP0285 Y285_HELPY P56130 418 HP0290 DCDA_HELPY P56129 405 lysA HP0296 RL21_HELPY P56046 104 rplU HP0297 RL27_HELPY P56050 88 rpmA HP0303 Y303_HELPY O25074 360 HP0306 GSA_HELPY P56115 430 hemL HP0315 VAPD_HELPY O05728 94 vapD HP0319 SYR_HELPY P56128 541 argS HP0321 KGUA_HELPY P56103 206 gmk HP0349 PYRG_HELPY O25116 538 pyrG HP0355 LEPA_HELPY O25122 602 lepA HP0361 TRUA_HELPY P56144 242 truA; hisT HP0363 PIMT_HELPY P56133 209 pcm HP0364 RIR2_HELPY P55983 341 nrdB HP0376 HEMZ_HELPY P56107 334 hemH HP0380 DHE4_HELPY P55990 448 gdhA HP0387 PRIA_HELPY O25149 619 priA HP0389 SODF_HELPY P43312 213 sodB HP0395 Y395_HELPY O25156 222 HP0399 RS1_HELPY P56008 556 rpsA HP0401 AROA_HELPY P56197 429 aroA HP0402 SYFB_HELPY P56145 764 pheT HP0403 SYFA_HELPY P56146 328 pheS HP0404 YHIT_HELPY P56147 104 HP0409 GUAA_HELPY O25165 508 guaA HP0417 SYM_HELPY P56127 650 metS HP0476 SYE_HELPY P96551 463 gltX HP0480 TYPA_HELPY O25225 599 typA HP0491 RL28_HELPY P56051 62 rpmB HP0501 GYRB_HELPY P55992 773 gyrB HP0510 DAPB_HELPY P94844 254 dapB HP0512 GLNA_HELPY P94845 481 glnA HP0514 RL9_HELPY P56035 150 rplI HP0517 ERA_HELPY P56059 302 era HP0532 CAGT_HELPY P97245 280 cagT; cag12 HP0534 CAGS_HELPY P97227 196 cagS; cag13 HP0544 CAGE_HELPY Q48252 983 cagE; cag23; picB HP0547 CGA0_HELPY P55980 1186 cagA; cai; gag26 HP0549 MURI_HELPY P56068 255 murI; glr HP0550 RHO_HELPY P56466 438 rho HP0551 RL31_HELPY P56053 67 rpmE HP0552 Y552_HELPY P56204 287 HP0557 ACCA_HELPY O25283 312 accA HP0559 ACP_HELPY P56464 78 acpP HP0562 RS21_HELPY P56028 70 rpsU HP0570 AMPA_HELPY O25294 496 pepA HP0572 APT_HELPY O25296 179 apt HP0577 FOLD_HELPY P56467 292 folD HP0581 PYRC_HELPY P56465 339 pyrC HP0598 BIOF_HELPY O25320 373 bioF HP0601 FLAA_HELPY Q03843 510 flaA HP0604 DCUP_HELPY O25325 340 hemE HP0615 DNLJ_HELPY O25336 656 ligA; lig HP0617 SYD_HELPY P56459 577 aspS HP0618 KAD_HELPY P56104 191 adk HP0620 IPYR_HELPY P56153 173 ppa HP0623 MURC_HELPY O25340 449 murC HP0648 MURA_HELPY P56189 422 murA; murZ HP0649 ASPA_HELPY P56149 468 aspA HP0653 FTN_HELPY P52093 167 pfr HP0661 RNH_HELPY P56120 143 rnhA HP0662 RNC_HELPY P56118 240 rnc HP0663 AROC_HELPY P56122 365 aroC HP0665 HEMN_HELPY O25376 457 hemN HP0680 RIR1_HELPY P55982 788 nrdA HP0691 SCOA_HELPY P56006 232 scoA HP0692 SCOB_HELPY P56007 207 scoB HP0700 KDGL_HELPY P56411 128 dgkA HP0701 GYRA_HELPY P48370 827 gyrA HP0705 UVRA_HELPY P56474 935 uvrA HP0714 RP54_HELPY P56143 414 rpoN HP0738 DDL_HELPY P56191 347 ddl; ddlA HP0742 KPRS_HELPY P56184 318 prsA HP0743 RODA_HELPY P56098 381 mrdB; rodA HP0752 FLID_HELPY P96786 674 fliD HP0763 FTSY_HELPY O25458 293 ftsY HP0768 MOAA_HELPY P56414 321 moaA HP0769 MOBA_HELPY P56415 201 mobA HP0770 FLHB_HELPY P56416 358 flhB HP0774 SYY_HELPY P56417 402 tyrS HP0777 PYRH_HELPY P56106 240 pyrH HP0779 ACO2_HELPY P56418 853 acnB HP0786 SECA_HELPY O25475 865 secA HP0791 HMCT_HELPY Q59465 686 cadA HP0793 DEF_HELPY P56419 174 def HP0794 CLPP_HELPY P56156 196 clpP HP0795 TIG_HELPY P56420 451 tig HP0797 HPA0_HELPY P55969 260 hpaA HP0798 MOAC_HELPY Q48260 158 moaC HP0799 MOG_HELPY P56421 176 mog HP0800 MOAE_HELPY P56422 145 moaE HP0802 GCH2_HELPY O08315 192 ribA HP0815 MOTA_HELPY P56426 257 motA HP0816 MOTB_HELPY P56427 257 motB HP0821 UVRC_HELPY P56428 594 uvrC HP0822 DHOM_HELPY P56429 421 hom HP0824 THIO_HELPY P56430 106 trxA HP0825 TRXB_HELPY P56431 311 trxB HP0828 ATP6_HELPY P56085 226 atpB HP0829 IMDH_HELPY P56088 481 guaB HP0830 AMID_HELPY P56114 453 HP0935 DBH_HELPY O25506 94 hup HP0866 GREA_HELPY P55978 164 greA HP0870 FLGE_HELPY P50610 718 flgE HP0875 CATA_HELPY P77872 505 katA HP0883 RUVA_HELPY O25549 183 ruvA HP0886 SYC_HELPY P41259 465 cysS HP0887 VAC0_HELPY P55981 1290 vacA HP0888 Y888_HELPY O05732 255 HP0889 Y889_HELPY O05731 326 HP0890 VDLC_HELPY O05730 284 vdlC HP0891 VDLD_HELPY O05729 174 vdlD HP0921 G3P_HELPY P55971 332 gapA; gap HP0925 RECR_HELPY P56214 193 recR HP0926 Y926_HELPY P55985 381 HP0928 GCH1_HELPY P56462 180 folE HP0955 LGT_HELPY O25609 284 lgt HP0960 SYGA_HELPY P56453 303 glyQ HP0972 SYGB_HELPY P56454 701 glyS HP0974 PMGI_HELPY P56196 491 pgm HP0976 BIOA_HELPY O25627 436 bioA HP0978 FTSA_HELPY O25629 492 ftsA HP0979 FTSZ_HELPY P56097 385 ftsZ HP1038 AROD_HELPY Q48255 167 aroQ HP1040 RS15_HELPY P56022 90 rpsO HP1041 FLHA_HELPY O06758 733 flhA; flbA HP1048 IF2_HELPY P55972 944 infB HP1059 RUVB_HELPY O25699 336 ruvB HP1063 GIDB_HELPY O25703 178 gidB HP1067 CHEY_HELPY P71403 124 cheY HP1068 PRMA_HELPY O07678 333 prmA; hsm HP1069 FTSH_HELPY P71408 632 ftsH HP1070 YA70_HELPY O07680 84 HP1071 PSS_HELPY Q48269 237 pssA; ptr HP1072 COA0_HELPY P55989 745 copA HP1073 COPP_HELPY Q48271 66 copP HP1077 NIXA_HELPY Q48262 331 nixA HP1100 EDD_HELPY P56111 608 edd HP1101 G6PD_HELPY P56110 425 zwf HP1112 PUR8_HELPY P56468 440 purB HP1114 UVRB_HELPY P94846 658 uvrB HP1131 ATPE_HELPY P56084 124 atpC HP1132 ATPB_HELPY P55988 469 atpD HP1133 ATPG_HELPY P56082 301 atpG HP1134 ATPA_HELPY P55987 503 atpA HP1136 ATPF_HELPY P56086 171 atpF HP1141 FMT_HELPY P56461 303 fmt HP1147 RL19_HELPY P56044 118 rplS HP1151 RS16_HELPY P56023 76 rpsP HP1152 SR54_HELPY P56005 448 ffh HP1153 SYV_HELPY P56000 874 valS HP1158 PROC_HELPY O25773 257 proC HP1166 G6PI_HELPY O25781 545 pgi HP1168 CSTA_HELPY P56190 687 cstA HP1174 GLUP_HELPY O25788 407 gluP HP1178 DEOD_HELPY P56463 233 deoD HP1179 DEOB_HELPY P56195 413 deoB HP1190 SYH_HELPY P56455 442 hisS HP1195 EFG_HELPY P56002 692 fusA HP1196 RS7_HELPY P56014 155 rpsG HP1197 RS12_HELPY P56019 135 rpsL HP1199 RL7_HELPY P55834 125 rplL HP1200 RL10_HELPY P56036 164 rplJ HP1201 RL1_HELPY P56029 234 rplA HP1202 RL11_HELPY P56037 141 rplK HP1203 NUSG_HELPY P55976 176 nusG HP1204 RL33_HELPY P56055 52 rpmG HP1205 EFTU_HELPY P56003 399 tuf HP1210 CYSE_HELPY P71405 171 cysE HP1212 ATPL_HELPY P56087 105 atpE HP1221 YC21_HELPY P55984 234 HP1241 SYA_HELPY P56452 847 alaS HP1244 RS18_HELPY P56025 85 rpsR HP1246 RS6_HELPY P56013 142 rpsF HP1248 VACB_HELPY P56123 644 vacB HP1249 AROE_HELPY P56119 263 aroE HP1253 SYW_HELPY P56396 339 trpS HP1256 RRF_HELPY P56398 185 frr HP1257 PYRE_HELPY P56162 201 pyrE HP1277 TRPA_HELPY P56141 262 trpA HP1278 TRPB_HELPY P56142 393 trpB HP1292 RL17_HELPY P56042 116 rplQ HP1293 RPOA_HELPY P56001 344 rpoA HP1294 RS4_HELPY P56011 208 rpsD HP1295 RS11_HELPY P56018 131 rpsK HP1296 RS13_HELPY P56020 120 rpsM HP1297 RL36_HELPY P56058 37 rpmJ HP1298 IF1_HELPY P55974 72 infA HP1299 AMPM_HELPY P56102 253 map HP1301 RL15_HELPY P56040 135 rplO HP1302 RS5_HELPY P56012 153 rpsE HP1303 RL18_HELPY P56043 119 rplR HP1304 RL6_HELPY P56034 178 rplF HP1305 RS8_HELPY P56015 131 rpsH HP1306 RS14_HELPY P56021 61 rpsN HP1307 RL5_HELPY P56033 181 rplE HP1308 RL24_HELPY P56049 73 rplX HP1309 RL14_HELPY P56039 122 rplN HP1310 RS17_HELPY P56024 86 rpsQ HP1311 RL29_HELPY P56052 66 rpmC HP1312 RL16_HELPY P56041 141 rplP HP1313 RS3_HELPY P56010 234 rpsC HP1314 RL22_HELPY P56047 122 rplV HP1315 RS19_HELPY P56026 93 rpsS HP1316 RL2_HELPY P56030 276 rplB HP1317 RL23_HELPY P56048 93 rplW HP1318 RL4_HELPY P56032 215 rplD HP1319 RL3_HELPY P56031 191 rplC HP1320 RS10_HELPY P56017 104 rpsJ HP1323 RNH2_HELPY P56121 209 rnhB HP1330 YD30_HELPY O25888 115 HP1331 YD31_HELPY O25889 228 HP1335 TRMU_HELPY O25893 360 trmU HP1345 PGK_HELPY P56154 402 pgk HP1347 UNG_HELPY P56397 233 ung HP1355 NADC_HELPY O25909 273 nadC HP1362 DNAB_HELPY O25916 488 dnaB HP1363 YD63_HELPY P56176 466 HP1379 LON_HELPY P55995 835 lon HP1386 RPE_HELPY P56188 217 rpe HP1406 BIOB_HELPY O25956 282 bioB HP1420 FLII_HELPY O07025 434 fliI HP1422 SYI_HELPY P56456 920 ileS HP1427 HPN_HELPY Q48251 60 hpn HP1428 YE28_HELPY O25970 357 HP1430 YE30_HELPY P56185 689 HP1444 SMPB_HELPY O25985 152 smpB HP1447 RL34_HELPY P56056 44 rpmH HP1448 RNPA_HELPY P55997 161 rnpA HP1456 LP20_HELPY P53436 175 lpp20 HP1459 YE59_HELPY P55986 262 HP1460 DP3A_HELPY P56157 1211 dnaE HP1468 ILVE_HELPY O26004 340 ilvE HP1470 DPO1_HELPY P56105 892 polA HP1480 SYS_HELPY P56458 415 serS HP1488 AN36_HELPY P94851 329 HP1495 TAL_HELPY P56108 316 tal HP1496 RL25_HELPY P56078 178 rplY HP1497 PTH_HELPY P56077 186 pth HP1514 NUSA_HELPY P55977 395 nusA HP1547 SYL_HELPY P56457 806 leuS HP1554 RS2_HELPY P56009 264 rpsB HP1555 EFTS_HELPY P55975 355 tsf HP1560 FTSW_HELPY P56096 388 ftsW HP1563 26KD_HELPY P21762 198 HP1584 GCP_HELPY P55996 340 gcp