------------------------------------------------------------------------------ SWISS-PROT Protein Sequence Data Bank. Release 36.0, July 1998 ------------------------------------------------------------------------------ Table of putative genes in Rhizobium plasmid pNGR234a ------------------------------------------------------------------------------ Amos Bairoch Email: bairoch@medecine.unige.ch Swiss Institute of Bioinformatics and University of Geneva Switzerland ------------------------------------------------------------------------------ Document name: NGR234.TXT ------------------------------------------------------------------------------ The complete genome (536'165 base pairs) of Rhizobium sp. strain NGR234 plasmid pNGR234a has been determined. See: Freiberg C.A., Fellay R., Bairoch A., Broughton W.J., Rosenthal A., Perret X. Nature 387:394-401(1997). For a detailed report on the results of plasmid pNGR234a analysis, see: http://genome.imb-jena.de/~cfreiber/pNGR234a2.html Legends and abbreviations for the table below can be found at the bottom of this document. ---- ----- ---------- ---- -------- --- ----------------------------------------- ----------------------------------------------------- Orf Gene SWISS-PROT Size Function Loc Description Other info name name aa class ---- ----- ---------- ---- -------- --- ----------------------------------------- ----------------------------------------------------- y4aA shc SQHC_RHISN 647 Enz:5 Cy? Pr. squalene-hopene cyclase y4aB Y4AB_RHISN 417 Enz:1 Cy? Pu. flavoprotein oxidoreductase y4aC Y4AC_RHISN 279 Enz:2 Cy? Pu. phytoene synthase y4aD Y4AD_RHISN 292 Enz:? Cy? Pu. involved in isoprenoid compound Sim. to phytoene synthases biosynthesis y4aF Y4AF_RHISN 314 Enz:1 Cy? Pu. NAD-dependent nucleotide sugar epimerase/dehydrogenase y4aG noeL NOEL_RHISN 351 Enz:2 Cy? GDP-mannose 4,6-dehydratase NODULATION y4aH nodZ NODZ_RHISN 322 Enz:2 Cy? Fucosyltransferase NODULATION y4aI noeK NOEK_RHISN 474 Enz:5 Cy? Phosphomannomutase NODULATION y4aJ noeJ NOEJ_RHISN 512 Enz:2 Cy? Mannose-1-P guanylyltransferase NODULATION y4aK Y4AK_RHISN 50 Unknown Cy? y4aL nodD1 NOD1_RHISN 322 TraReg Cy lysR family H-T-H; regulates expression NODULATION; of nodABC High sim. to nodD2 y4aM Y4AM_RHISN 143 TraReg Cy? Pu. DNA-binding Sim. to R.rubrum protein thought to be DNA-binding; Sim. to y4wC y4aN Y4AN_RHISN 148 Unknown Cy? Sim. to A.rhizogenes pRIA4B replication region Orf3 y4aO Y4AO_RHISN 192 Unknown Cy? Low sim. to y4nF y4aP mucR MUCR_RHISN 143 TraReg? Cy? ros/mucR homolog High sim. to y4pD y4aQ Y4AQ_RHISN 188 Unknown Cy? Sim. to y4hP, y4jD & y4qI; Sim. to Orfs in R.meliloti & A.tumefaciens TI plasmid y4aR Y4AR_RHISN 107 Unknown Cy? y4aS Y4AS_RHISN 181 Unknown Cy? y4bA Y4BA_RHISN 694 Unknown Tm? Id. to y4pH y4bB Y4BB_RHISN 88 Unknown Pe? Id. to y4pI; High sim. to y4oL y4bC Y4BC_RHISN 149 Unknown Cy? Id. to y4pJ; High sim. to y4oM y4bD Y4BD_RHISN 89 Unknown Cy? Id. to y4pK; High sim. to y4oN y4bF Y4BF_RHISN 457 Int-Rec Cy? Pu. transposase Sim. to Tpase IS1202; Sim. to y4iG y4bG Y4BG_RHISN 271 Unknown Pe? y4bH Y4BH_RHISN 91 Unknown Tm? y4bI Y4BI_RHISN 138 Unknown Pe? Sim. to H.influenzae HI1631 y4bJ Y4BJ_RHISN 630 Enz:3? Tm? Pu. peptidase (S2C family) Distant member of S2C family y4bK Y4BK_RHISN 222 Unknown Cy? Some sim. to P.aeruginosa PAH cluster Orf1 y4bL Y4BL_RHISN 516 Int-Rec Cy? Pu. transposase Id. to y4kJ & y4tB; Sim. to y4uI; Sim. to Tpase IS21/IS1162 family y4bM Y4BM_RHISN 263 Int-Rec Cy? Pu. Tpase-associated ATP-binding protein Id. to y4kI & y4tA; Sim. to y4iQ, y4nD, y4sD, y4pL & y4uH Sim. to ATP-binding protein from IS21/IS1162 fam. y4bN Y4BN_RHISN 431 Unknown Cy? y4bO Y4BO_RHISN 606 Unknown Cy? y4cA Y4CA_RHISN 1197 Unknown Cy? Largest protein in pNGR234a y4cB Y4CB_RHISN 98 Unknown Tm? y4cC Y4CC_RHISN 517 Unknown Cy? y4cD Y4CD_RHISN 640 Unknown Cy? y4cE Y4CE_RHISN 391 Unknown Cy? y4cF Y4CF_RHISN 380 Unknown Cy? y4cG Y4CG_RHISN 305 Int-Rec Cy? Pr. DNA invertase 'resolvase-type' y4cH Y4CH_RHISN 69 TraReg? Cy? Pr. cold shock regulator y4cI Y4CI_RHISN 404 CellDev? Cy? Pu. replication protein Sim. to A.rhizogenes repC y4cJ Y4CJ_RHISN 326 CellDev? Cy? Pu. replication protein Sim. to A.rhizogenes repB y4cK Y4CK_RHISN 407 CellDev? Cy? Pu. replication protein Sim. to A.rhizogenes repA y4cL traI TRAI_RHISN 208 Enz:? Cy Pr. autoinducer synthetase y4cM trbB TRBB_RHISN 325 Export Cy Pr. conjugal transfer protein pulE fam. y4cN trbC TRBC_RHISN 127 Export Tm Pr. conjugal transfer protein y4cO trbD TRBD_RHISN 99 Export Tm Pr. conjugal transfer protein y4cP trbEA TRB1_RHISN 149 Export Cy? Pr. conjugal transfer protein y4cQ trbEB TRB2_RHISN 662 Export Cy? Pr. conjugal transfer protein y4dA trbJ TRBJ_RHISN 267 Export Cy? Pr. conjugal transfer protein y4dB trbK TRBK_RHISN 65 Export Pe? Pr. conjugal transfer protein y4dC trbL TRBL_RHISN 391 Export Tm Pr. conjugal transfer protein y4dD trbF TRBF_RHISN 220 Export Tm? Pr. conjugal transfer protein y4dE trbG TRBG_RHISN 270 Export Pe? Pr. conjugal transfer protein y4dF trbH TRBH_RHISN 148 Export Lp? Pr. conjugal transfer protein y4dG trbI TRBI_RHISN 431 Export Tm? Pr. conjugal transfer protein y4dH traR TRAR_RHISN 236 TraReg Cy luxR family H-T-H; Pr. regulates conjugal transfer in presence of autoinducer y4dI traM TRAM_RHISN 107 TraReg Cy? Pu. repressor y4dJ Y4DJ_RHISN 77 TraReg? Cy? pbsX family H-T-H regulator y4dK Y4DK_RHISN 106 Unknown Cy? y4dL Y4DL_RHISN 196 Unknown Cy? y4dM Y4DM_RHISN 409 Unknown Cy? Sim. to E.coli hipA & H.influenzae HI0665; Sim. to y4mE y4dN Y4DN_RHISN 62 Unknown Cy? y4dO Y4DO_RHISN 133 Unknown Cy? Sim. to mitochondrial and chloroplast intron maturases & to E.coli ykfC; Could be bogus y4dP Y4DP_RHISN 200 Unknown Cy? Sim. to A.tumefaciens TI plasmid ORF2&3 in conjugal transfer region 1 y4dQ traB TRAB_RHISN 387 CellDev? Tm Pr. conjugal transfer protein y4dR traF TRAF_RHISN 188 CellDev? Pe? Pr. conjugal transfer protein y4dS traA TRAA_RHISN 1102 CellDev? Cy? Pr. conjugal transfer protein y4dT traC TRAC_RHISN 102 CellDev? Cy? Pr. conjugal transfer protein y4dU traD TRAD_RHISN 71 CellDev? Cy? Pr. conjugal transfer protein y4dV traG TRAG_RHISN 640 CellDev? Tm Pr. conjugal transfer protein y4dW Y4DW_RHISN 204 Unknown Cy? y4dX Y4DX_RHISN 192 Unknown Cy? y4eA Y4EA_RHISN 88 Unknown Cy? y4eB Y4EB_RHISN 104 Unknown Cy? y4eC Y4EC_RHISN 307 Unknown Cy? Sim. to N-ter. of E.coli pRP4 & pR751 traC y4eD Y4ED_RHISN 375 Enz:3? Cy? Pu. phosphodiesterase Sim. to glycerophosphoryl diester phosphodiesterases y4eE Y4EE_RHISN 358 Unknown Cy? y4eF Y4EF_RHISN 251 Int-Rec Cy? Pu. integrase/recombinase 'phage-type' y4eH nolL NOLL_RHISN 366 Transp? Tm? Pu. transport protein NODULATION; nolL is said to be an acetyltransferase but seems not probable y4eI Y4EI_RHISN 103 Unknown Tm? y4eK Y4EK_RHISN 248 Enz:1 Cy? Pr. short chain oxidoreductase y4eL Y4EL_RHISN 248 Enz:1 Cy? Pr. short chain oxidoreductase y4eN Y4EN_RHISN 103 Unknown Cy? y4eO Y4EO_RHISN 221 Unknown Cy? y4fA Y4FA_RHISN 845 Chemot Tm Pr. chemoreceptor Sim. to y4sI y4fB Y4FB_RHISN 664 Unknown Cy? y4fC Y4FC_RHISN 244 Enz:1 Cy? Pu. monooxygenase Could be bogus y4fD Y4FD_RHISN 220 Unknown Tm y4fE Y4FE_RHISN 160 Unknown Pe? y4fF Y4FF_RHISN 181 Unknown Cy? y4fG Y4FG_RHISN 129 Unknown Cy? y4fH Y4FH_RHISN 102 Unknown Cy? y4fJ Y4FJ_RHISN 343 Transp? Om Pu. porin Sim. to R.leguminosarum OMPIIIA y4fK Y4FK_RHISN 427 TraReg? Cy? araC family H-T-H regulator y4fL Y4FL_RHISN 275 Enz:? Tm? Belongs to inositol monophosphatase fam. y4fM Y4FM_RHISN 311 Unknown Cy? y4fN Y4FN_RHISN 569 Transp Tm Pr. ABC transporter permease y4fO Y4FO_RHISN 339 Transp Cy Pr. ABC transporter ATP-binding protein y4fP Y4FP_RHISN 358 Transp Pe Pr. ABC transporter binding protein y4fQ Y4FQ_RHISN 392 Enz:2? Cy? 'ROK' family member TraReg? y4fR Y4FR_RHISN 546 Unknown Cy? Sim. to S.flexneri ipaH 7.8 & Y.pestis yopM y4gA Y4GA_RHISN 187 Unknown Cy? y4gB Y4GB_RHISN 139 Unknown Cy? y4gC Y4GC_RHISN 192 Int-Rec Cy? Pu. integrase/recombinase 'phage-type' y4gD Y4GD_RHISN 92 Unknown Cy? y4gE Y4GE_RHISN 248 Unknown Cy? Could be bogus y4gF RFBB_RHISN 350 Enz:4 Cy? Pr. dTDP-glucose 4,6-dehydratase rfbB homolog y4gG RFBD_RHISN 296 Enz:1 Cy? Pr. dTDP-4-dehydrorhamnose reductase rfbD homolog y4gH RFBA_RHISN 286 Enz:1 Cy? Pr. glucose-1-phosphate thymidylyltransf. rfbA homolog y4gI Y4GI_RHISN 909 Enz:? Cy? Pu. enzyme involved in polysaccharide Sim. to M.xanthus O-antigen rfbC biosynthesis y4gJ Y4GJ_RHISN 192 Unknown Cy? y4gK fixF FIXF_RHISN 402 Enz:? Cy? Pu. enzyme involved in polysaccharide NITROGEN FIXATION; Low sim. to E.coli kpsS biosynthesis y4gL RFBC_RHISN 195 Enz:5 Cy? Pr. dTDP-4-dehydrorhamnose 3,5-epimerase rfbC homolog y4gM Y4GM_RHISN 586 Transp Tm Pr. ABC transporter ATP-binding protein y4gN Y4GN_RHISN 383 Enz:? Cy? Sim. to V.anguillarum virA y4hA Y4HA_RHISN 367 Transp? Tm Pu. ionic transporter Sim. to E.coli chaA y4hB noeE NOEE_RHISN 419 Enz:2 Cy? Transfer activated sulfate to fucose NODULATION y4hC noeI NOEI_RHISN 243 Enz:? Cy? Not yet characterized step in nod-factor NODULATION synthesis y4hD nolO NOLO_RHISN 680 Enz:2 Cy? O-carbamoylation of nod-factor NODULATION; Sim. to y4nB (nodU) y4hE nodJ NODJ_RHISN 262 Transp Tm Pr. ABC transporter permease NODULATION y4hF nodI NODI_RHISN 343 Transp Cy Pr. ABC transporter ATP-binding protein NODULATION y4hG nodC NODC_RHISN 413 Enz:2 Cy N-acetylglucosaminyltransferae NODULATION y4hH nodB NODB_RHISN 215 Enz:3 Cy Chitooligosaccharide deacetylase NODULATION y4hI nodA NODA_RHISN 196 Enz:2 Cy N-acyltransferase NODULATION y4hJ Y4HJ_RHISN 260 Enz:1? Cy? Pu. oxidoreductase Sim. to N-ter. of anaerobic coproporphyrinogen III oxidases y4hK Y4HK_RHISN 247 Unknown Tm y4hL Y4HL_RHISN 85 Unknown Cy? y4hM Y4HM_RHISN 403 Enz:1? Pe? Pu. oxidoreductase Low sim. to Z.mobilis glucose-fructose oxidoreductase y4hN Y4HN_RHISN 144 Int-Rec? Cy? Sim. to IS elements IS2/IS1312/IS866 proteins; Sim. to y4jB & y4rG y4hO Y4HO_RHISN 115 Unknown Cy? Sim. to y4jC; Sim. to ORFC from R.leguminosarum symbiotic plasmid y4hP Y4HP_RHISN 552 Unknown Cy? Sim. to y4aQ, y4jD & y4qI; Sim. to Orfs in R.meliloti & A.tumefaciens TI plasmid y4hQ Y4HQ_RHISN 194 Unknown Cy? Sim. to Orf-3 in A.rhizogenes plasmid pRIA4B y4hR Y4HR_RHISN 74 Unknown Cy? y4iR Y4IR_RHISN 161 Enz:? Cy? Could be involved in polysaccharide Sim. to R.leguminosarum psiB biosynthesis y4iC Y4IC_RHISN 230 Unknown Cy? Sim. to M.tuberculosis Mtcy373.06; D.vulgaris rrf2 & E.coli yjeB y4iD Y4ID_RHISN 662 Enz:1 Cy? Pr. monooxygenase y4iE Y4IE_RHISN 135 Unknown Cy? Some sim. to y4rL & y4zA; Could be bogus y4iF Y4IF_RHISN 305 Unknown Cy? y4iG Y4IG_RHISN 90 Unknown Cy? Could be bogus; Sim. to y4bF y4iH Y4IH_RHISN 239 Unknown Pe? Sim. to y4jT y4iI Y4II_RHISN 703 Unknown Tm y4iJ Y4IJ_RHISN 596 Unknown Tm? y4iK Y4IK_RHISN 232 Unknown Cy? y4iL Y4IL_RHISN 432 Unknown Cy? y4iM Y4IM_RHISN 432 Unknown Cy? y4iN Y4IN_RHISN 208 Unknown Pe? y4iO Y4IO_RHISN 252 Int-Rec Cy? Pu. transposase Low sim. to Tpase IS1111A/IS1328/IS1533 family; Sim. to y4pF, y4sB & y4qE y4iP Y4IP_RHISN 131 Unknown Cy? Some sim. to y4rJ; Could be bogus y4iQ Y4IQ_RHISN 298 Int-Rec Cy? Pu. Tpase-associated ATP-binding protein Id. to y4nD & y4sD; Sim. to y4bM, y4kI, y4tA, y4pL & y4uH Sim. to ATP-binding protein from IS21/IS1162 fam. y4jA Y4JA_RHISN 504 Int-Rec? Cy? Pu. transposase Low sim. to Tpase IS21/IS408/IS1162 family Id. to y4nE & y4sE y4jB Y4JB_RHISN 152 Int-Rec? Cy? Sim. to IS elements IS2/IS1312/IS866 proteins; Sim. to y4hN & y4rG y4jC Y4JC_RHISN 117 Unknown Cy? Sim. to y4hO; Sim. to ORFC from R.leguminosarum symbiotic plasmid y4jD Y4JD_RHISN 511 Unknown Cy? Sim. to y4aQ, y4hP & y4qI; Sim. to Orfs in R.meliloti & A.tumefaciens TI plasmid y4jE Y4JE_RHISN 273 Unknown Tm? y4jF Y4JF_RHISN 519 Unknown Tm y4jG Y4JG_RHISN 162 Unknown Tm? y4jH Y4JH_RHISN 205 Unknown Cy? y4jI Y4JI_RHISN 130 Unknown Cy? y4jJ Y4JJ_RHISN 85 Celldev? Cy? Pu. plasmid stability Sim. to P.syringase stbC y4jK Y4JK_RHISN 140 Celldev? Cy? Pu. plasmid stability Sim. to P.syringase stbB y4jL Y4JL_RHISN 220 Unknown Cy? y4jM Y4JM_RHISN 70 Unknown Cy? y4jN Y4JN_RHISN 146 Unknown Cy? y4jO Y4JO_RHISN 321 Unknown Cy? y4jP Y4JP_RHISN 262 Unknown Cy? y4jQ Y4JQ_RHISN 1039 Unknown Cy? y4jR Y4JR_RHISN 151 Unknown Cy? y4jS Y4JS_RHISN 413 Unknown Cy? y4jT Y4JT_RHISN 336 Unknown Pe? Sim. to y4iH y4kA Y4KA_RHISN 322 Unknown Cy? y4kB Y4KB_RHISN 141 Unknown Tm? y4kD Y4KD_RHISN 549 Unknown Cy? y4kE Y4KE_RHISN 347 Unknown Cy? y4kF Y4KF_RHISN 434 Unknown Cy? y4kG Y4KG_RHISN 69 Unknown Tm? y4kH Y4KH_RHISN 127 Unknown Cy? y4kI Y4BM_RHISN 263 Int-Rec Cy? Pu. Tpase-associated ATP-binding protein Id. to y4bM & y4tA; Sim. to y4iQ, y4nD, y4sD, y4pL & y4uH Sim. to ATP-binding protein from IS21/IS1162 fam. y4kJ Y4BL_RHISN 516 Int-Rec Cy? Pu. transposase Id. to y4bL & y4tB; Sim. to y4uI; Sim. to Tpase IS21/IS1162 family y4kK Y4KK_RHISN 312 Unknown Cy? y4kL Y4KL_RHISN 330 Unknown Cy? Pr. AAA-family ATPase y4kM Y4KM_RHISN 117 Unknown Cy? y4kN Y4KN_RHISN 140 Unknown Cy? y4kO Y4KO_RHISN 82 Unknown Cy? y4kP Y4KP_RHISN 96 Unknown Cy? y4kQ Y4KQ_RHISN 142 Unknown Cy? Could be bogus y4kR Y4KR_RHISN 43 Unknown Cy? Sim. to N-ter. of E.herbicola ORF6 in crtE-crtX region; Could be bogus; Smallest ORF predicted to be a protein y4kS Y4KS_RHISN 301 Unknown Cy? High sim. to B.japonicum hyp. protein y4kT Y4KT_RHISN 516 Unknown Cy? High sim. to B.japonicum hyp. protein y4kU ISPA_RHISN 332 Enz:2 Cy? Pr. geranyltranstransferase y4kV CPXU_RHISN 447 Enz:1 Cy? Pr. cytochrome P450 y4lA Y4LA_RHISN 278 Enz:1 Cy? Pr. short chain oxidoreductase y4lB FE45_RHISN 102 E-trans Cy? Pu. 3Fe-3S ferredoxin of P450 system y4lC CPXR_RHISN 467 Enz:1 Cy? Pr. cytochrome P450 y4lD CPXP_RHISN 400 Enz:1 Cy? Pr. cytochrome P450 y4lF Y4LF_RHISN 323 Unknown Cy? y4lG Y4LG_RHISN 161 Unknown Cy? y4lH Y4LH_RHISN 192 Celldev? Cy? Pu. cell filamentation Sim. to enterobacterial protein fic y4lI Y4LI_RHISN 69 Unknown Cy? y4lJ Y4LJ_RHISN 167 Unknown Cy? y4lK Y4LK_RHISN 132 Unknown Cy? y4lL Y4LL_RHISN 827 Unknown Cy? Belongs to E.coli yegE/yhdA/yhjK/yjcC family y4lN Y4LN_RHISN 160 Unknown Tm? y4lO Y4LO_RHISN 260 Unknown Cy? Sim. to X.campestris avirulence avrrXV y4lR Y4LR_RHISN 522 Unknown Cy? y4lS Y4LS_RHISN 183 Int-Rec Cy? Pu. integrase/recombinase 'resolvase-type' y4mA Y4MA_RHISN 141 Unknown Cy? y4mB Y4MB_RHISN 229 Unknown Om? Sim. to E.coli yciD, V.cholerae ompW, P.oleovorans alkL y4mC Y4MC_RHISN 237 Unknown Pe? y4mD Y4MD_RHISN 89 Unknown Cy? y4mE Y4ME_RHISN 420 Unknown Cy? Sim. to E.coli hipA & H.influenzae HI0665 y4mF Y4MF_RHISN 76 TraReg? Cy? Pr. H-T-H regulator Sim. to phage p22 C2 y4mG Y4MG_RHISN 73 Unknown Cy? y4mH Y4MH_RHISN 297 Unknown Cy? y4mI Y4MI_RHISN 324 Transp Pe Pr. ABC transporter binding protein Pu. sugar transport operon y4mJ Y4MJ_RHISN 333 Transp Tm Pr. ABC transporter permease Pu. sugar transport operon y4mK Y4MK_RHISN 497 Transp Cy Pr. ABC transporter ATP-binding protein Pu. sugar transport operon y4mL Y4ML_RHISN 419 Transp? Tm Pu. permease Belongs to E.coli yiaN/ygiK family y4mM Y4MM_RHISN 541 Transp? Tm Pu. permease Belongs to SBR family 7 y4mN Y4MN_RHISN 345 Enz:2? Cy? Pr. TPP enzyme C-terminal Belongs to transketolase family; Pu. frameshift y4mO Y4MO_RHISN 279 Enz:2? Cy? Pr. TPP enzyme N-terminal Belongs to transketolase family; Pu. frameshift y4mP Y4MP_RHISN 253 Enz:1 Cy? Pr. short chain oxidoreductase y4mQ Y4MQ_RHISN 298 TraReg? Cy? LysR family H-T-H regulator y4nA Y4NA_RHISN 726 Enz:3? Cy? Pr. peptidase (S9A family) Sim. to y4qF & y4sO y4nB nodU NODU_RHISN 558 Enz:2 Cy 6-O-carbamoylation of nod-factor NODULATION; Sim. to y4hD (nolO) y4nC nodS NODS_RHISN 216 Enz:2 Cy Methyltransferase involved in nod-factor NODULATION biosynthesis y4nD Y4IQ_RHISN 298 Int-Rec Cy? Pu. Tpase-associated ATP-binding protein Id. to y4iQ & y4sD; Sim. to y4bM, y4kI, y4tA, y4pL & y4uH Sim. to ATP-binding protein from IS21/IS1162 fam. y4nE Y4JA_RHISN 504 Int-Rec? Cy? Pu. transposase Low sim. to Tpase IS21/IS408/IS1162 family Id. to y4JA & y4sE y4nF Y4NF_RHISN 230 Unknown Pe? Low sim. to y4aO y4nG Y4NG_RHISN 396 Enz:? Cy? Pu. NAD-dependent nucleotide sugar epimerase/dehydrogenase y4nH Y4NH_RHISN 117 Unknown Tm Sim. to E.coli ethidium bromide resistance (ebr) y4nI Y4NI_RHISN 120 Unknown Tm? y4nJ Y4NJ_RHISN 505 Enz:1 Cy? Pr. GMC-type oxidoreductase y4nK Y4NK_RHISN 662 Unknown Tm? y4nL Y4NL_RHISN 356 Enz:? Cy? Pu. NAD-dependent nucleotide sugar epimerase/dehydrogenase y4nM Y4NM_RHISN 516 Transp? Tm Pu. permease Sim. to A.caulidans noeC y4oA Y4OA_RHISN 593 Enz:? Cy? Sim. to E.coli pMCCC7 microcin biosynthesis protein mccB; Sim. to y4qC y4oB Y4OB_RHISN 129 Unknown Cy? y4oC Y4OC_RHISN 230 Unknown Cy? y4oD Y4OD_RHISN 214 Unknown Cy? y4oE Y4OE_RHISN 69 Unknown Cy? y4oL Y4OL_RHISN 88 Unknown Cy? High sim. to y4bB & y4pI y4oM Y4OM_RHISN 149 Unknown Cy? High sim. to y4bC & y4pJ y4oN Y4ON_RHISN 70 Unknown Cy? High sim. to y4bD & y4pK y4oP Y4OP_RHISN 431 Transp Pe Pr. ABC transporter binding protein Pu. sugar-like transport operon y4oQ Y4OQ_RHISN 309 Transp Tm Pr. ABC transporter permease Pu. sugar-like transport operon y4oR Y4OR_RHISN 277 Transp Tm Pr. ABC transporter permease Pu. sugar-like transport operon y4oS Y4OS_RHISN 371 Transp Cy Pr. ABC transporter ATP-binding protein Pu. sugar-like transport operon y4oT Y4OT_RHISN 196 Unknown Cy? Sim. to y4oV & y4pA y4oU Y4OU_RHISN 402 Unknown Pe? y4oV Y4OV_RHISN 285 Unknown Cy? Sim. to y4oT & y4pA y4oW Y4OW_RHISN 216 Unknown Cy? y4oX Y4OX_RHISN 360 Enz:1 Cy? Pr. NAD-dependent oxidoreductase Sim. to R.meliloti mocA & S.griseus strI y4pA Y4PA_RHISN 609 TraReg Cy? Pr. sigma54-dependent H-T-H In N-ter., sim. to y4oT & y4oV y4pB otsB OTSB_RHISN 265 Enz:3 Cy Pr. trehalose-phosphatase High sim. to E.coli y4pC otsA OTSA_RHISN 464 Enz:2 Cy Pr. a,a-trehalose-phosphate synthase High sim. to E.coli; 2nd copy exists in pNGR234a (fq1-fq2) truncated by an IS y4pD Y4PD_RHISN 171 TraReg? Cy? ros/mucR homolog Lack Zn finger char. of this family; High sim. to y4aP y4pE Y4PE_RHISN 135 Int-Rec? Cy? Sim. to R.fredii RFRS9 & A.xylinum IS1268 Orf; Id. to y4sA y4pF Y4PF_RHISN 387 Int-Rec Cy? Pr. transposase Sim. to Tpase IS1111A/IS1328/IS1533 family; Id. to y4sB; Sim. to y4qE y4pG Y4PG_RHISN 192 Int-Rec? Cy? Id. to y4sC; Sim. to A.xylinum IS1268 orfA y4pH Y4BA_RHISN 694 Unknown Tm? Id. to y4bA y4pI Y4BB_RHISN 88 Unknown Pe? Id. to y4bB; High sim. to y4oL y4pJ Y4BC_RHISN 149 Unknown Cy? Id. to y4bC; High sim. to y4oM y4pK Y4BD_RHISN 89 Unknown Cy? Id. to y4bD; High sim. to y4oN y4pL Y4PL_RHISN 245 Int-Rec Cy? Pu. Tpase-associated ATP-binding protein Sim. tp y4bM, y4kI, y4tA, y4iQ, y4nD, y4sD & y4uH; Sim. to ATP-binding protein from IS21/IS1162 fam. y4pM Y4PM_RHISN 272 Unknown Cy? y4pN syrM1 SYR1_RHISN 338 TraReg Cy lysR family H-T-H regulator High sim. to syrM2 y4pO Y4PO_RHISN 400 Int-Rec Cy? Pr. transposase Belongs to Tpase Mutator family y4qB Y4QB_RHISN 164 Unknown Cy? y4qC Y4QC_RHISN 583 Enz:? Cy? Sim. to E.coli pMCCC7 microcin biosynthesis protein mccB; Sim. to y4oA y4qD Y4QD_RHISN 244 Unknown Cy? Sim. to y4rO y4qE Y4QE_RHISN 390 Int-Rec Cy? Pr. transposase Sim. to Tpase IS1111A/IS1328/IS1533 family; Sim. to y4pF & y4sB y4qF Y4QF_RHISN 754 Enz:3? Cy? Pr. peptidase (S9A family) Sim. to y4nA & y4sO y4qG Y4QG_RHISN 448 Enz:2 Cy? Class-3 aminotransferase y4qH Y4QH_RHISN 326 TraReg? Cy? luxR family H-T-H regulator y4qI Y4QI_RHISN 539 Unknown Cy? Sim. to y4aQ, y4hP & y4jD; Sim. to Orfs in R.meliloti & A.tumefsciens TI plasmid y4qJ Y4QJ_RHISN 398 Int-Rec Cy? Pu. transposase Sim. to Tpase IS801 y4qK Y4QK_RHISN 308 Int-Rec Cy? Pu. integrase/recombinase 'phage-type' y4rA Y4RA_RHISN 409 Int-Rec Cy? Pu. integrase/recombinase 'phage-type' y4rB Y4RB_RHISN 314 Int-Rec Cy? Pu. integrase/recombinase 'phage-type' y4rC Y4RC_RHISN 332 Int-Rec Cy? Pu. integrase/recombinase 'phage-type' y4rD Y4RD_RHISN 281 Int-Rec Cy? Pu. integrase/recombinase 'phage-type' y4rE Y4RE_RHISN 310 Int-Rec Cy? Pu. integrase/recombinase 'phage-type' y4rF Y4RF_RHISN 425 Int-Rec Cy? Pu. integrase/recombinase 'phage-type' y4rG Y4RG_RHISN 135 Int-Rec? Cy? Sim. to IS elements IS2/IS1312/IS866 proteins; Sim. to y4hN & y4jB y4rH Y4RH_RHISN 478 Enz:6? Cy? Pu. ligase Sim. to biotin carboxylase y4rI Y4RI_RHISN 390 Unknown Cy? y4rJ Y4RJ_RHISN 396 Int-Rec Cy? Pu. transposase Sim. to Tpase IS1111A/IS1328/IS1533 family y4rK Y4RK_RHISN 124 Unknown Cy? y4rL Y4RL_RHISN 155 Unknown Cy? Some sim. to y4iE & y4zA; Could be bogus y4rM Y4RM_RHISN 350 Unknown Cy? Sim. to y4zA y4rN Y4RN_RHISN 405 Unknown Tm Sim. to M.tuberculosis Mtcy50.24 y4rO Y4RO_RHISN 618 Enz:? Cy? Sim. to y4qD; Sim. to C-ter. of histidinol- phosphate aminotransferase y4sA Y4PE_RHISN 135 Int-Rec? Cy? Sim. to R.fredii RFRS9 & A.xylinum IS1268 Orf; Id. to y4pE y4sB Y4PF_RHISN 387 Int-Rec Cy? Pr. transposase Sim. to Tpase IS1111A/IS1328/IS1533 family; Id. to y4pF; Sim. to y4qE y4sC Y4PG_RHISN 192 Int-Rec? Cy? Id. to y4pG; Sim. to A.xylinum IS1268 orfA y4sD Y4IQ_RHISN 298 Int-Rec Cy? Pu. Tpase-associated ATP-binding protein Id. to y4iQ & y4nD; Sim. to y4bM, y4kI, y4tA, y4pL & y4uH Sim. to ATP-binding protein from IS21/IS1162 fam. y4sE Y4JA_RHISN 504 Int-Rec? Cy? Pu. transposase Low sim. to Tpase IS21/IS408/IS1162 family Id. to y4JA & y4nE y4sG Y4SG_RHISN 336 Enz:6? Cy? Pu. ligase Sim. to D-ala,D-ala ligases y4sH Y4SH_RHISN 461 Enz:? Cy? Pu. cell wall comp. biosynthesis Sim. to B.anthracis capA; High sim. to y4uA y4sI Y4SI_RHISN 756 Chemot Tm Pr. chemoreceptor Sim. to y4fA y4sJ gabD GABD_RHISN 491 Enz:1 Cy? Pr. succinate-semialdehyde dehydrogenase y4sK Y4SK_RHISN 126 Unknown Cy? Pr. important cellular function Belongs to YER057C/YIL051C/yjgF family y4sL Y4SL_RHISN 203 Enz:1? Cy? Pu. oxidoreductase Sim. to C-ter. of E.coli D-amino acid dehydrogenase small subunit y4sM Y4SM_RHISN 127 TraReg? Cy? asnC/lrp family H-T-H regulator Lacks H-T-H region; Could be bogus y4sN Y4SN_RHISN 125 Int-Rec Cy? Pu. transposase Sim. to Tpase IS6501 family y4sO Y4SO_RHISN 705 Enz:3? Cy? Pr. peptidase (S9A family) Sim. to y4nA & y4qF y4tA Y4BM_RHISN 263 Int-Rec Cy? Pu. Tpase-associated ATP-binding protein Id. to y4bM & y4kI; Sim. to y4iQ, y4nD, y4sD, y4pL & y4uH Sim. to ATP-binding protein from IS21/IS1162 fam. y4tB Y4BL_RHISN 516 Int-Rec Cy? Pu. transposase Id. to y4bL & y4kJ; Sim. to y4uI; Sim. to Tpase IS21/IS1162 family y4tD Y4TD_RHISN 169 TraReg? Cy? asnC/lrp family H-T-H regulator y4tE Y4TE_RHISN 300 Transp Pe Pr. ABC transporter binding protein Pu. amino acid transport operon y4tF Y4TF_RHISN 238 Transp Tm Pr. ABC transporter permease Pu. amino acid transport operon y4tG Y4TG_RHISN 231 Transp Tm Pr. ABC transporter permease Pu. amino acid transport operon y4tH Y4TH_RHISN 257 Transp Cy Pr. ABC transporter ATP-binding protein Pu. amino acid transport operon y4tI Y4TI_RHISN 402 Enz:3? Cy? Pu. peptidase (M40 family) y4tJ Y4TJ_RHISN 332 Enz:4 Cy Pu. threonine dehydratase y4tK Y4TK_RHISN 331 Enz:4 Cy? Pu. cyclodeaminase y4tL Y4TL_RHISN 390 Enz:3? Cy? Pu. peptidase/hydrolase (M24 family) Sim. to y4tM y4tM Y4TM_RHISN 392 Enz:3? Cy? Pu. peptidase/hydrolase (M24 family) Sim. to y4tL y4tN Y4TN_RHISN 174 Unknown Cy? y4tO Y4TO_RHISN 531 Transp Pe Pr. ABC transporter binding protein Pu. peptide transport operon y4tP Y4TP_RHISN 313 Transp Tm Pr. ABC transporter permease Pu. peptide transport operon y4tQ Y4TQ_RHISN 291 Transp Tm Pr. ABC transporter permease Pu. peptide transport operon y4tR Y4TR_RHISN 335 Transp Cy Pr. ABC transporter ATP-binding protein Pu. peptide transport operon y4tS Y4TS_RHISN 353 Transp Cy Pr. ABC transporter ATP-binding protein Pu. peptide transport operon y4uA Y4UA_RHISN 461 Enz:? Cy? Pu. cell wall comp. biosynthesis Sim. to B.anthracis capA; High sim. to y4sH y4uB Y4UB_RHISN 467 Enz:2 Cy? Class-3 aminotransferase Could be a 4-aminobutyrate aminotransferase y4uC Y4UC_RHISN 512 Enz:1 Cy? Pr. aldehyde dehydrogenase Could be a succinate-semialdehyde dehydrogenase y4uD Y4UD_RHISN 165 Unknown Cy? y4uE Y4UE_RHISN 359 Int-Rec Cy? Pu. transposase Sim. to Tpase IS110 family y4uF DHE3_RHISN 443 Enz:1 Cy Pr. glutamate dehydrogenase y4uG Y4UG_RHISN 71 Unknown Tm? y4uH Y4UH_RHISN 248 Int-Rec Cy? Pu. Tpase-associated ATP-binding protein Sim. tp y4bM, y4kI, y4tA, y4iQ, y4nD, y4sD & y4pL; Sim. to ATP-binding protein from IS21/IS1162 fam. y4uI Y4UI_RHISN 514 Int-Rec Cy? Pu. transposase Sim. to y4bL, y4kJ & y4tB; Sim. to Tpase IS21/IS1162 family y4uJ fixU FIXU_RHISN 76 Unknown Cy? NITROGEN FIXATION y4uK nifZ NIFZ_RHISN 108 Unknown Cy? NITROGEN FIXATION y4uL fdxN FDXN_RHISN 64 E-trans Cy 4Fe-4S ferredoxin NITROGEN FIXATION y4uM nifB NIFB_RHISN 493 Enz:? Cy? Nitrogenase cofactors biosynthesis NITROGEN FIXATION y4uN nifA NIFA_RHISN 594 TraReg Cy Sigma54-dependent H-T-H regulator NITROGEN FIXATION y4uO fixX FIXX_RHISN 97 E-trans Cy Pr. 3Fe-3S ferredoxin NITROGEN FIXATION y4uP fixC FIXC_RHISN 435 Enz:? Cy? Nitrogenase cofactors biosynthesis NITROGEN FIXATION y4vA fixB FIXB_RHISN 369 E-trans Cy Electron transfer fixAB complex NITROGEN FIXATION y4vB fixA FIXA_RHISN 285 E-trans Cy Electron transfer fixAB complex NITROGEN FIXATION y4vC Y4VC_RHISN 106 Enz:? Cy? Belongs to hesB/yadR/yfhF family y4vD Y4VD_RHISN 188 Enz:1? Cy? Pu. redox enzyme Sim. to C.boidinii peroxisomal proteins A/B & H.influenzae HI0572 y4vE nifQ NIFQ_RHISN 230 Enz:? Cy? Pu. nitrogenase Mo cofactor processing NITROGEN FIXATION y4vF dctA1 DCTA_RHISN 504 Transp Tm C4-dicarboxylate transport y4vG Y4VG_RHISN 414 Enz:1 Cy? Pr. cytochrome P450 y4vH Y4VH_RHISN 218 Unknown Cy? y4vI Y4VI_RHISN 548 Enz:1 Cy? Pr. short chain oxidoreductase Contains 2 homologous domains y4vJ Y4VJ_RHISN 351 Enz:1? Cy? Pu. monooxygenase Sim. to luxA/B (bacterial luciferase); Sim. to y4wF y4vK nifH1 NIFH_RHISN 296 Enz:1 Cy Nitrogenase Fe protein NITROGEN FIXATION; Id. to y4xA (nifH2) y4vL nifD1 NIFD_RHISN 504 Enz:1 Cy Nitrogenase Mo-Fe protein alpha NITROGEN FIXATION; Id. to y4xB (nifD2) y4vM nifK1 NIFK_RHISN 513 Enz:1 Cy Nitrogenase Mo-Fe protein beta NITROGEN FIXATION; Id. to y4xC (nifK2) y4vN nifE NIFE_RHISN 496 Enz Cy Nitrogenase Fe-Mo cofactor biosynthesis NITROGEN FIXATION y4vO nifN NIFN_RHISN 469 Enz Cy Nitrogenase Fe-Mo cofactor biosynthesis NITROGEN FIXATION y4vP nifX NIFX_RHISN 160 Unknown Cy? NITROGEN FIXATION y4vQ Y4VQ_RHISN 162 Unknown Cy? NITROGEN FIXATION ?; Sim. to nifX-nifW intergenic Orf in N-fixing bacteria; Sim. to y4xD y4vR Y4VR_RHISN 139 Enz:? Cy? Nitrogenase Fe protein homolog NITROGEN FIXATION ?; Sim. to N-ter. of nifH; Could be bogus y4vS fdxB FDXB_RHISN 105 E-trans Cy 4Fe-4S ferredoxin NITROGEN FIXATION ? y4wA Y4WA_RHISN 512 Enz:3? Cy? Pr. zinc peptidase (M16 family) Sim. to y4wB y4wB Y4WB_RHISN 447 Enz:3? Cy? Pu. zinc peptidase (M16 family) Sim. to y4wA; Could lack enz. activity as it lack Zn-binding site y4wC Y4WC_RHISN 143 TraReg Cy? Pu. DNA-binding Sim. to R.rubrum protein thought to be DNA-binding; Sim. to y4aM y4wD Y4WD_RHISN 377 Transp? Tm Permease-type protein Sim. to R.meliloti mosC y4wE Y4WE_RHISN 368 Enz:2 Cy? Class-2 aminotransferase y4wF Y4WF_RHISN 342 Enz:1? Cy? Pu. monooxygenase Sim. to luxA/B (bacterial luciferase); Sim. to y4vJ y4wG Y4WG_RHISN 181 Unknown Cy? y4wH Y4WH_RHISN 145 Unknown Cy? Sim. to A.tumefaciens plasmid pTIA6 Orf in pinF2 region y4wI Y4WI_RHISN 513 Unknown Cy? y4wJ Y4WJ_RHISN 125 Unknown Cy? y4wK nifW NIFW_RHISN 150 Unknown Cy? NITROGEN FIXATION y4wL nifS NIFS_RHISN 387 Enz:2 Cy? Class-5 aminotransferase NITROGEN FIXATION y4wM Y4WM_RHISN 663 Transp? Pe Pu. ABC transporter binding protein y4wO Y4WO_RHISN 106 Unknown Cy? y4wP Y4WP_RHISN 135 Unknown Cy? y4xA nifH2 NIFH_RHISN 296 Enz:1 Cy Nitrogenase Fe protein NITROGEN FIXATION; Id. to y4vK (nifH1) y4xB nifD2 NIFD_RHISN 504 Enz:1 Cy Nitrogenase Mo-Fe protein alpha NITROGEN FIXATION; Id. to y4vL (nifD1) y4xC nifK2 NIFK_RHISN 513 Enz:1 Cy Nitrogenase Mo-Fe protein beta NITROGEN FIXATION; Id. to y4vM (nifK1) y4xD Y4XD_RHISN 162 Unknown Cy? NITROGEN FIXATION ?; Sim. to nifX-nifW intergenic Orf in N-fixing bacteria; Sim. to y4vQ y4xE Y4XE_RHISN 67 Unknown Cy? NITROGEN FIXATION ?; Sim. to nifX-nifW intergenic Orf in N-fixing bacteria y4xF Y4XF_RHISN 58 Unknown Cy? y4xQ Y4XQ_RHISN 100 TraReg? Tm? Pu. exopolysaccharide production Sim. to Rhizobium exoX repressor y4xG Y4XG_RHISN 505 Unknown Tm? y4xH nodD2 NOD2_RHISN 312 TraReg Cy lysR family H-T-H; regulates expression NODULATION; of nodABC High sim. to nodD1 y4xI Y4XI_RHISN 226 TraReg Cy? Signal transduction-type regulator y4xJ Y4XJ_RHISN 423 Export? Om? Secretion system (pulD family) Sim. to y4yD (nolW) y4xK Y4XK_RHISN 188 Unknown Lp? y4xL Y4XL_RHISN 338 Unknown Cy? y4xM Y4XM_RHISN 404 Transp? Tm Permease-type protein Sim. to E.coli yceE and to tetracycline transporters y4xN Y4XN_RHISN 628 Enz:? Cy? Low sim. to E.coli pCOLV-K30 aerobactin synthase subunit iucC y4xO Y4XO_RHISN 379 Unknown Cy? y4xP Y4XP_RHISN 336 Enz:4 Cy? Pu. cysteine synthase y4yA Y4YA_RHISN 457 Unknown Cy? y4yB Y4YB_RHISN 154 Unknown Cy? y4yC nolX NOLX_RHISN 596 Unknown Tm? NODULATION y4yD nolW NOLW_RHISN 234 Export? Tm? Secretion system (pulD family) NODULATION; Sim. to y4xJ y4yE nolB NOLB_RHISN 164 Unknown Cy? NODULATION y4yF nolT NOLT_RHISN 289 Unknown Lp NODULATION y4yG nolU NOLU_RHISN 212 Unknown Cy? NODULATION y4yH nolV NOLV_RHISN 208 Unknown Cy? NODULATION y4yI Y4YI_RHISN 451 Export? Cy Pr. ATP synthase of a secretion system Enz:3 y4yJ Y4YJ_RHISN 178 Unknown Cy? y4yK Y4YK_RHISN 358 Export Cy? Pr. secretion system protein Belongs to fliN/mopA/spaO family y4yL Y4YL_RHISN 222 Export Tm Pr. secretion system protein Belongs to fliP/mopC/spaP family y4yM Y4YM_RHISN 91 Export Tm Pr. secretion system protein Belongs to fliQ/mopD/spaQ family y4yN Y4YN_RHISN 272 Export Tm Pr. secretion system protein Belongs to fliR/mopE/spaR family y4yO Y4YO_RHISN 345 Export Tm Pr. secretion system protein Belongs to flhB/hrpN/spaS family y4yP Y4YP_RHISN 271 Unknown Cy? Sim. to R.fredii host-inducible protein A y4yQ Y4YQ_RHISN 296 Unknown Tm? y4yR Y4YR_RHISN 697 Export Tm Pr. secretion system protein Belongs to the FHIPEP family y4yS Y4YS_RHISN 182 Unknown Tm? y4zA Y4ZA_RHISN 295 Unknown Cy? Sim. to y4rL, y4rM & y4iE y4zB Y4ZB_RHISN 356 Int-Rec Cy? Pu. transposase Sim. to Tpase IS4 family y4zC Y4ZC_RHISN 261 Unknown Cy? Sim. to P.syringae avirulence avrpPH3 y4zD Y4ZD_RHISN 49 Unknown Cy? y4zF syrM2 SYR2_RHISN 339 TraReg Cy lysR family H-T-H regulator High sim. to syrM1 ---- ----- ---------- ---- -------- --- ----------------------------------------- ----------------------------------------------------- Legend for the function class: CellDev Cell and/or plasmid control and development Chemot Chemotaxis E-trans Electron transport Enz:1 Enzyme, oxidoreductase Enz:2 Enzyme, transferase Enz:3 Enzyme, hydrolase Enz:4 Enzyme, lyase Enz:5 Enzyme, isomerase Enz:6 Enzyme, ligase Export Protein export system Int-Rec Involved in integration/recombination TraReg Transcription regulation Transp Transport Unknown Not obvious, either because there is no similarity to a characterized protein or because the similarity is too low to infer a putative function Legend for the subcellular location: Cy: cytoplasmic Om: outer membrane Pe: periplasmic Lp: lipoprotein attached to either inner or outer membrane Tm: transmembrane in inner membrane Se: secreted Abbreviations: Id : Identical Pr : Probable Pu : Putative Sim : Similar C-ter: C-terminal N-ter: N-terminal