------------------------------------------------------------------------------ SWISS-PROT Protein Sequence Data Bank. Release 36.0, July 1998 ------------------------------------------------------------------------------ List of restriction enzyme and methylase entries ------------------------------------------------------------------------------ Amos Bairoch Email: bairoch@medecine.unige.ch Swiss Institute of Bioinformatics and University of Geneva Switzerland ------------------------------------------------------------------------------ Document name: RESTRIC.TXT ------------------------------------------------------------------------------ Further informations about restriction enzymes and their associated methylases is available from the following WWW pages: REBASE: http://www.neb.com/rebase ============================== Type II enzymes and methylases ============================== Name Recognition site(s) Restriction Type Methylase(s) entry of enzyme enzyme of name(s) entry name met. --------- ------------------------- ----------- ---- ---------------------- AbrI C^TCGAG T2AB_AZOBR ? N.A. AccI GT^MKAC T2A1_ACICA 6mA MTA1_ACICA AluI AG^CT N.A. 5mC MTA1_ARTLU AquI C^YCGRG N.A. 5mC MTAA_SYNP2 MTAB_SYNP2 BamHI G^GATCC T2BA_BACAM 4mC MTB1_BACAM BamHII GGATCC N.A. 4mC MTB2_BACAM BanI G^GYRCC T2BA_BACAR 5mC MTBA_BACAR BanIII AT^CGAT N.A. 6mA MTB3_BACAR BbvI GCAGC (13); GCTGC (-12) N.A. 5mC MTB1_BACBR BepI CG^CG N.A. 5mC MTB1_BREEP BseCI AT^CGAT N.A. 5mC MTB1_BACST Bsp6I GC^NGC T2B6_BACSP 5mC MTB6_BACSP BspRI GG^CC N.A. 5mC MTB1_BACSH BstVI C^TCGAG T2V1_BACST 6mA MTV1_BACST BsuBI CTGCAG T2BB_BACSU 6mA MTBB_BACSU BsuFI C^CGG T2BF_BACSU 5mC MTBF_BACSU BsuRI GG^CC T2BR_BACSU 5mC MTBR_BACSU CeqI GAT^ATC T2C1_COREQ 6mA MTC1_COREQ Cfr9I C^CCGGG T2C9_CITFR 4mC MTC9_CITFR Cfr10I R^CCGGY T2CX_CITFR 5mC N.A. CfrBI C^CWWGG T2C1_CITFR 4mC MTC1_CITFR CviAII C^ATG T2C2_CHVP1 6mA MTC2_CHVP1 CviBI G^ANTC N.A. 6mA MTC1_CHVN1 CviJI RG^CY T2C1_CHVI3 5mC MTC1_CHVI3 CviRI TG^CA N.A. 6mA MTR1_CHVN6 DdeI C^TNAG T2D1_DESDN 5mC MTD1_DESDN DpnI GA^TC T2D1_STRPN ? N.A. DpnII ^GATC T2D2_STRPN 6mA MT21_STRPN MT22_STRPN DsaV ^CCNGG N.A. 5mC MTD5_DACSA EcaI G^GTNACC N.A. 6mA MTEC_ENTCL Eco47I G^GWCC T2E7_ECOLI ? N.A. Eco47II G^GNCC T2E8_ECOLI 5mC MTE8_ECOLI Eco57I CTGAAG (22); CTTCAG (-14) T257_ECOLI 6mA MT57_ECOLI EcoRI G^AATTC T2E1_ECOLI 6mA MTE1_ECOLI EcoRII ^CCWGG T2E2_ECOLI 5mC MTE2_ECOLI EcoRV GAT^ATC T2E5_ECOLI 6mA MTE5_ECOLI FnuDI GG^CC N.A. 5mC MTF1_FUSNU FokI GGATG (14); CATCC (-13) T2F1_FLAOK 6mA MTF1_FLAOK HaeIII GG^CC N.A. 5mC MTH3_HAEAE HgaI GACGC (10); GCGTC (-10) T2G1_HAEGA 5mC MTG1_HAEGA MTG2_HAEGA HgiBI G^GWCC T2B1_HERAU 5mC MTB1_HERAU HgiCI G^GYRCC T2C1_HERAU 5mC MTC1_HERAU HgiCII G^GWCC T2C2_HERAU 5mC MTC2_HERAU HgiDI GR^CGYC T2D1_HERAU 5mC MTD1_HERAU HgiDII G^TCGAC N.A. 5mC MTD2_HERAU HgiEI G^GWCC T2E1_HERAU 5mC MTE1_HERAU HgiGI GR^CGYC T2G1_HERAU 5mC MTG1_HERAU HhaI GCG^C N.A. 5mC MTH1_HAEHA HhaII G^ANTC T2H2_HAEHA 6mA MTH2_HAEHA HincII GTY^RAC T2HC_HAEIN 6mA MTHC_HAEIN HindII GTY^RAC T2HD_HAEIN 6mA MTHD_HAEIN HindIII A^AGCTT T2H3_HAEIN 6mA MTH3_HAEIN HinfI G^ANTC T2H1_HAEIN 6mA MTH1_HAEIN HpaI GTT^AAC T2H1_HAEPA 6mA MTH1_HAEPA HpaII C^CGG T2H2_HAEPA 5mC MTH2_HAEPA HphI GGTGA (13); TCACC (-7) T2H1_HAEPH 5mC MTHC_HAEPH 6mA MTHA_HAEPH KpnI GGTAC^C T2K1_KLEPN 6mA MTK1_KLEPN LlaDCHI ^GATC T2L2_LACLC 6mA ML21_LACLC ML22_LACLC MamI GATNN^NNATC T2M1_MICAM 6mA MTM1_MICAM MboI ^GATC T2M1_MORBO 6mA MT1A_MORBO MT1C_MORBO MboII GAAGA (13); TCTTC (-7) T2M2_MORBO 6mA MTM2_MORBO MjaI C^TAG T2M1_METJA 4mC MTM1_METJA MspI C^CGG T2M1_MORSP 5mC MTM1_MORSP MthTI GGCC T2MT_METTF 5mC MTHT_METTF MthZI C^TAG T2MZ_METTF 4mC MTHZ_METTF MunI C^AATTG T2MU_MYCSP 6mA MTMU_MYCSP MvaI CC^WGG N.A. 4mC MTMV_MICVA NaeI GCC^GGC T2N1_NOCAE 5mC MTN1_NOCAE NgoPII GG^CC T2NG_NEIGO 5mC MTNG_NEIGO NgoMI G^CCGGC T2NM_NEIGO 5mC MTNM_NEIGO NlaIII CATG^ T2N3_NEILA 6mA MTN3_NEILA NlaIV GGN^NCC T2N4_NEILA 5mC MTN4_NEILA NspV TT^CGAA T2N5_NOSS7 ? MTN5_NOSS7 PaeR7I C^TCGAG T2P7_PSEAE 6mA MTP7_PSEAE PstI CTGCA^G T2PS_PROST 6mA MTPS_PROST PvuI CGAT^CG T2P1_PROVU ? N.A. PvuII CAG^CTG T2P2_PROVU 4mC MTP2_PROVU RsrI G^AATTC T2R1_RHOSH 6mA MTR1_RHOSH Sau3AI ^GATC T2S3_STAAU 5mC MTS3_STAAU Sau96I G^GNCC T2S9_STAAU 5mC MTS9_STAAU ScrFI CC^NGG T2S1_LACLC 5mC MTSA_LACLC MTSB_LACLC SinI G^GWCC T2SI_SALIN 5mC MTSI_SALIN SmaI CCC^GGG T2SM_SERMA 4mC MTSM_SERMA SsoII ^CCNGG T2S2_SHISO 5mC MTS2_SHISO StsI GGATG (15); CATCC (-14) T2S1_STRSA 6mA MTS1_STRSA TaqI T^CGA T2TA_THEAQ 6mA MTTA_THEAQ TthHB8I T^CGA T2T8_THETH 6mA MTT8_THETH VspI AT^TAAT N.A. 6mA MTV1_VIBS3 XcyI C^CCGGG T2X1_XANCC 4mC MTX1_XANCC XorII CGATC^G N.A. 5mC MTX2_XANOR M.BsuSpb GGCC; GCNGC 5mC MTBB_BPSPB M.BsuSprI GGCC; CCGG 5mC MTBS_BPSPR M.CviBIII TCGA 6mA MTC3_CHVN1 M.EcoDcm CCWGG 5mC DCM_ECOLI M.EcoDam GATC 6mA DMA_ECOLI M.EcoT2Dam GATC 6mA DMA_BPT2 M.EcoT4Dam GATC 6mA DMA_BPT4 M.Eco67Dam GATC 6mA DMA7_ECOLI M.LlaI ? 6mA MTL1_LACLA M.NlaX CCNGG 5mC MTNX_NEILA M.Phi3TI GGCC; GCNGC 5mC MTBP_BACSU M.Rho11sI GGCC; GAGCTC 5mC MTBR_BPRH1 M.SmaDam GATC 6mA DMA_SERMA M.StyDam GATC 6mA DMA_SALTY M.SPbetaI GGCC 5mC MTBB_BPSPB M.SPRI GGCC 5mC MTBS_BPSPR M.SssI CG 5mC MTSI_SPISQ M.SpomI CCWGG 5mC PMT1_SCHPO ============== Type I enzymes ============== Name of Recognition sequence S protein R protein M protein enzyme entry name entry name entry name --------- ------------------------- ----------- ----------- ----------- EcoAI GAGN(7)GTCA T1SA_ECOLI N.A. N.A. EcoBI TGAN(8)TGCT T1SB_ECOLI N.A. N.A. EcoDI TTAN(7)GTCY T1SD_ECOLI N.A. N.A. EcoEI GAGN(7)TGC T1SE_ECOLI N.A. N.A. EcoKI AACN(6)GTGC T1SK_ECOLI T1R_ECOLI T1M_ECOLI EcoR124II GAAN(6)RTCG T1S1_ECOLI T1R1_ECOLI T1M1_ECOLI StySPI AACN(6)GTRC T1S_SALPO N.A. T1M_SALPO StySJI GAGN(6)GTRC T1S_SALTY N.A. T1M_SALTY ================ Type III enzymes ================ Name of Recognition sequence Mod protein Res protein enzyme entry name entry name --------- ------------------------- ----------- ----------- EcoPI AGACC (?); GGTCT (?) T3MO_BPP1 T3RE_BPP1 EcoP15I CAGCAG (31); CTGCTG (-27) T3MO_ECOLI N.A. StyLTI CAGAG (?); CTCTG (?) T3MO_SALTY T3RE_SALTY Bc???? ?; ? N.A. T3RE_BACCE =============== Type IV enzymes =============== Name of Recognition sequence Subunit A Subunit B enzyme entry name entry name --------- ------------------------------------ ----------- ----------- BcgI GCANNNNNNTCG (24) CGANNNNNNTGC (-10) T4BA_BACCO T4BB_BACCO CGANNNNNNTGC (24) GCANNNNNNTCG (-10)