------------------------------------------------------------------------------ SWISS-PROT Protein Sequence Data Bank. Release 36.0, July 1998 ------------------------------------------------------------------------------ Yeast Chromosome I entries ------------------------------------------------------------------------------ Amos Bairoch Email: bairoch@medecine.unige.ch Swiss Institute of Bioinformatics and University of Geneva Switzerland ------------------------------------------------------------------------------ Document name: YEAST1.TXT ------------------------------------------------------------------------------ ====================================== Yeast chromosome I open reading frames ====================================== The complete DNA sequence of chromosome I of the yeast S.cerevisiae has been determined by the Dept. of Biology of McGill University, Montreal. See: Bussey M., et al. Proc. Natl. Acad. Sci. U.S.A. 92:3809-3813(1995). Size of CHRI: 230 Kb Total number of ORFs currently in SWISS-PROT: 99 ===================== ORF code nomenclature ===================== YX[L|R]ddd[w|c] Y = Yeast X = Letter representing the chromosome (in this case X is 'A' for CHRI) L | R = 'L' is for Left arm; 'R' is for Right arm ddd = ORF number on the left or right arm c | w = 'c' is for complementary strand; 'w' is for Watson strand ================== Categories of ORFs ================== 1: genetically and biochemically characterized 2: genetically characterized, but exact function not known 3: high similarity to a protein of characterized function 4: high similarity to a protein of uncharacterized function 5: low similarity to an existing protein 6: no known similarity (temporary assignment) 7: probable non-expressed ORF ---------- ---------- ------ ---- ------------------- --------------- ---- ORF SWISS-PROT S-PROT Size Gene name and ORF code Cat. code entry name AC a.a. synonyms synonyms ---------- ---------- ------ ---- ------------------- --------------- ---- YAL067c SEO1_YEAST P39709 593 SEO1 2 YAL066w YAG6_YEAST P39710 102 6 YAL064w FLO9_YEAST P39711 108 FLO9 2 YAL063c YAG3_YEAST P39712 1322 4 YAL062w DHE5_YEAST P39708 457 GDH3 FUN51 3 YAL061w YAG1_YEAST P39713 417 FUN50 3 YAL060w YAG0_YEAST P39714 382 FUN49 3 YAL059w ECM1_YEAST P39715 212 ECM1; SIM1 2 YAL058w CALX_YEAST P27825 502 CNE1 FUN48 1 YAL056w YAF6_YEAST P39717 847 6 YAL055w YAF5_YEAST P39718 180 6 YAL054c ACSA_YEAST Q01574 713 ACS1 FUN44 1 YAL053w YAF3_YEAST P39719 783 4 YAL051w YAF1_YEAST P39720 1062 FUN43 3 YAL049c YAE9_YEAST P39721 246 6 YAL048c YAE8_YEAST P39722 662 6 YAL047c YAE7_YEAST P39723 622 FUN42 6 YAL046c YAE6_YEAST P39724 118 6 YAL045c YAE5_YEAST P39725 102 5 YAL044c GCSH_YEAST P39726 177 GCV3 FUN40 1 YAL043c PTA1_YEAST Q01329 785 PTA1 FUN39 2 YAL042w YAE2_YEAST P39727 415 FUN9 4 YAL041w CC24_YEAST P11433 854 CDC24; CLS4 1 YAL040c CG13_YEAST P13365 580 CLN3; WHI1; DAF1 FUN10 1 YAL039c CCHL_YEAST P06182 269 CYC3 1 YAL038w KPY1_YEAST P00549 500 PYK1; CDC19 1 YAL037w YAD7_YEAST P39728 267 6 YAL036c YAD6_YEAST P39729 369 FUN11 4 YAL035w YAD5_YEAST P39730 1002 FUN12 3 YAL034Aw YADA_YEAST P39731 289 6 YAL034c YAD4_YEAST P28003 463 FUN19 6 YAL033w YAD3_YEAST P28005 173 FUN53 6 YAL032c YAD2_YEAST P28004 379 FUN20 4 YAL031c YAD1_YEAST P39732 760 FUN21 6 YAL030w SNC1_YEAST P31109 117 SNC1 1 YAL029c MYS4_YEAST P32492 1471 MYO4 FUN22 1 YAL028w YAC8_YEAST P39734 528 6 YAL027w YAC7_YEAST P39735 261 6 YAL026c ATC3_YEAST P39524 1355 DRS2 FUN38 1 YAL025c MK16_YEAST P10962 306 MAK16 2 YAL024c LTE1_YEAST P07866 1435 LTE1; MSI2 1 YAL023c PMT2_YEAST P31382 758 PMT2 FUN25 2 YAL022c YAC2_YEAST P31381 517 FUN26 6 YAL021c CCR4_YEAST P31384 837 CCR4 FUN27 1 YAL020c ATS1_YEAST P31386 333 ATS1 FUN28; YAL006 1 YAL019w YAB9_YEAST P31380 1131 FUN30; YAL001 3 YAL018c YAB8_YEAST P31379 325 YAL003 6 YAL017w KAB7_YEAST P31374 1356 FUN31; YAL002 3 YAL016w 2AAA_YEAST P31383 635 TPD3 FUN32 1 YAL015c YAB5_YEAST P31378 399 FUN33 4 YAL014c YAB4_YEAST P31377 205 FUN34 5 YAL013w DEP1_YEAST P31385 362 DEP1 FUN54 2 YAL012w CYS3_YEAST P31373 393 CYS3; CYI1; STR1 FUN35 1 YAL011w YAB1_YEAST P31376 638 FUN36 6 YAL010c MD10_YEAST P18409 493 MDM10 FUN37 1 YAL009w SPO7_YEAST P18410 259 SPO7 2 YAL008w YAA8_YEAST P18411 198 FUN14 6 YAL007c YAA7_YEAST P39704 215 FUN54 3 YAL005c HS71_YEAST P10591 641 SSA1 1 YAL004w YAA4_YEAST P39703 215 6 YAL003w EF1B_YEAST P32471 205 EFB1; TEF5 1 YAL002w VPS8_YEAST P39702 1176 VPS8 FUN15 2 YAL001c TFC3_YEAST P34111 1160 TFC3; TSV115 FUN24 1 YAR002w YAH2_YEAST P39705 539 FUN17 6 YAR003w YAH3_YEAST P39706 426 FUN16 5 YAR007c RFA1_YEAST P22336 621 RFA1; BUF2; RPA1 FUN3 1 YAR008w SE34_YEAST P39707 275 SEN34 FUN4 1 YAR014c YAI4_YEAST P27637 702 FUN2 6 YAR015w PUR7_YEAST P27616 306 ADE1 1 YAR018c KIN3_YEAST P22209 435 KIN3; NPK1 FUN52 1 YAR019c CC15_YEAST P27636 974 CDC15 2 YAR020c YAJ0_YEAST P39545 55 7 YAR023c YAJ3_YEAST P39546 179 4 YAR027w YAJ7_YEAST P39547 235 FUN55 4 YAR028w YAJ8_YEAST P39548 234 FUN56 4 YAR029w YAJ9_YEAST P39549 74 FUN57 4 YAR030c YAK0_YEAST P39550 113 7 YAR031w YAKI_YEAST P39551 298 FUN58 4 YAR033w YAK3_YEAST P39552 234 FUN59 4 YAR035w CACM_YEAST P80235 688 YAT1 1 YAR037w YAK7_YEAST P39553 193 7 YAR040c YAL0_YEAST P39554 119 7 YAR042w SWH1_YEAST P39555 256 SWH1 2 YAR043c YAL3_YEAST P39556 106 7 YAR044w OSH1_YEAST P35845 859 OSH1; SWH1 2 YAR047c YAL7_YEAST P39557 106 6 YAR050w FLO1_YEAST P32768 1537 FLO1 1 YAR052c YAM2_YEAST P39558 126 7 YAR053w YAM3_YEAST P39559 98 6 YAR060c YH12_YEAST P38895 111 6 YAR061w YAN1_YEAST P39561 67 5 YAR062w YH13_YEAST P38896 198 3 YAR064w YAN4_YEAST P39563 99 6 YAR068w YAN8_YEAST P39564 161 6 YAR069c YAN9_YEAST P39565 97 6 YAR070c YAO0_YEAST P39566 99 6 YAR071w PPAB_YEAST P35842 467 PHO11 1 YAR073w IMH4_YEAST P39567 403 FUN63 3 YAR074c YAO4_YEAST P39568 108 7