------------------------------------------------------------------------------ SWISS-PROT Protein Sequence Data Bank. Release 36.0, July 1998 ------------------------------------------------------------------------------ Yeast Chromosome XI entries ------------------------------------------------------------------------------ Amos Bairoch Email: bairoch@medecine.unige.ch Swiss Institute of Bioinformatics and University of Geneva Switzerland ------------------------------------------------------------------------------ Document name: YEAST11.TXT ------------------------------------------------------------------------------ ======================================= Yeast chromosome XI open reading frames ======================================= The complete DNA sequence of chromosome XI of the yeast S.cerevisiae has been determined in the framework of the European Union genome sequencing programmes. See: Dujon B., et al. Nature 369:371-378(1994). Correspondence concerning the molecular biology of the work presented: Bernard Dujon Unite de Genetique moleculaire des levures Departement de Biologie moleculaire Institut Pasteur 25 rue du Dr. Roux F-75724 PARIS-CEDEX 15 France. Tel. : +33-1-45 68 84 82 or +33-1-45 68 84 78 FAX : +33-1-40 61 30 60 E-Mail: bdujon@mendel.sis.pasteur.fr Size of CHRXI: 666 Kb Total number of ORFs currently in SWISS-PROT: 334 ===================== ORF code nomenclature ===================== YX[L|R]ddd[w|c] Y = Yeast X = Letter representing the chromosome (in this case X is 'K' for CHRXI) L | R = 'L' is for Left arm; 'R' is for Right arm ddd = ORF number on the left or right arm c | w = 'c' is for complementary strand; 'w' is for Watson strand ================== Categories of ORFs ================== 1: genetically and biochemically characterized 2: genetically characterized, but exact function not known 3: high similarity to a protein of characterized function 4: high similarity to a protein of uncharacterized function 5: low similarity to an existing protein 6: no known similarity (temporary assignment) 7: probable non-expressed ORF ---------- ---------- ------ ---- ------------------- --------------- ---- ORF SWISS-PROT S-PROT Size Gene name and ORF code Cat. code entry name AC a.a. synonyms synonyms ---------- ---------- ------ ---- ------------------- --------------- ---- YKL225w YKW5_YEAST P36030 115 4 YKL224c YKW4_YEAST P35994 123 4 YKL223w YKW3_YEAST P36031 110 4 YKL222c YKW2_YEAST P35995 705 3 YKL221w YKW1_YEAST P36032 473 3 YKL220c FRE2_YEAST P36033 711 FRE2 1 YKL219w YKV9_YEAST P36034 407 4 YKL218c YKV8_YEAST P36007 326 3 YKL217w JEN1_YEAST P36035 616 JEN1 1 YKL216w PYRD_YEAST P28272 314 URA1 1 YKL215c YKV5_YEAST P28273 1286 3 YKL214c YKV4_YEAST P36036 203 5 YKL213c DOA1_YEAST P36037 715 DOA1 2 YKL212w RSD1_YEAST P32368 623 RSD1; SAC1 1 YKL211c TRPG_YEAST P00937 484 TRP3 1 YKL210w UBA1_YEAST P22515 1024 UBA1 1 YKL209c STE6_YEAST P12866 1290 STE6 1 YKL208w YKU8_YEAST P36038 271 6 YKL207w YKU7_YEAST P36039 260 6 YKL206c YKU6_YEAST P36040 267 5 YKL205w LOS1_YEAST P33418 1100 LOS1 1 YKL204w YKU4_YEAST P36041 632 5 YKL203c TOR2_YEAST P32600 2473 TOR2; DRR2 1 YKL202w YKU2_YEAST P36042 193 6 YKL201c YKU1_YEAST P36043 539 4 YKL200c YKU0_YEAST P36044 398 4 YKL199c YKT9_YEAST P36045 187 6 YKL198c KKT8_YEAST P36002 560 3 YKL197c PEX1_YEAST P24004 1043 PEX1; PAS1 2 YKL196c YKT6_YEAST P36015 200 3 YKL195w YKT5_YEAST P36046 427 5 YKL194c SYTM_YEAST P07236 462 MST1 1 YKL193c SD22_YEAST P36047 338 SDS22; EGP1 1 YKL192c ACP_YEAST P32463 125 3 YKL191w DPH2_YEAST P32461 534 DPH2 2 YKL190w CALB_YEAST P25296 174 CNB1; YCNB; YCN2 1 YKL189w YKS9_YEAST P32464 399 4 YKL188c PXA2_YEAST P34230 853 PXA2; PAT1 YKL741 1 YKL187c YKS7_YEAST P34231 750 5 YKL186c MTR2_YEAST P34232 184 MTR2 2 YKL185w YKS5_YEAST P34233 588 5 YKL184w DCOR_YEAST P08432 466 ORD1 1 YKL183w YKS3_YEAST P34234 306 6 YKL182w FAS1_YEAST P07149 2051 FAS1 1 YKL181w KPR1_YEAST P32895 427 PRPS1; PRS1; PRPS; 1 PRP1; PPS1 YKL180w RL7A_YEAST P05740 183 RPL17 1 YKL179c YKR9_YEAST P34237 679 5 YKL178c STE3_YEAST P06783 470 STE3 1 YKL177w YKR7_YEAST P34238 112 6 YKL176c YKR6_YEAST P34239 828 YKL642 6 YKL175w YKR5_YEAST P34240 503 YKL640 6 YKL174c YKR4_YEAST P36029 618 YKL639 3 YKL173w GI10_YEAST P36048 1008 GIN10 YKL637 1 YKL172w YKR2_YEAST P36049 427 YKL636 6 YKL171w KKR1_YEAST P36003 928 YKL635 3 YKL170w RM38_YEAST P35996 138 MRPL38 YKL634 1 YKL169c YKQ9_YEAST P36050 127 YKL633 6 YKL168c KKQ8_YEAST P36004 734 YKL632 3 YKL167c RM49_YEAST P32388 137 MRP49 YKL631 1 YKL166c KAPC_YEAST P05986 398 TPK3; PKA3 YKL630 1 YKL165c YKQ5_YEAST P36051 919 YKL619 5 YKL164c PIR1_YEAST Q03178 341 PIR1; CCW6 YKL618 2 YKL163w PIR3_YEAST Q03180 361 PIR3; CCW8 YKL617 2 YKL162c YKQ2_YEAST P36052 402 YKL616 6 YKL161c KKQ1_YEAST P36005 433 YKL615 3 YKL160w YKQ0_YEAST P36053 145 YKL614 6 YKL159c YKP9_YEAST P36054 211 YKL613 6 YKL158w YKP8_YEAST P36055 100 YKL612 6 YKL157w APE2_YEAST P32454 844 APE2; LAP1 YKL611 1 YKL156w R271_YEAST P35997 82 3 YKL155c YKP5_YEAST P36056 628 YKL610 6 YKL154w SRPB_YEAST P36057 244 YKL609 3 YKL153w YKP3_YEAST P36058 169 YKL608 7 YKL152c PMG1_YEAST P00950 246 GPM1; GPM YKL607 1 YKL151c YKP1_YEAST P36059 337 YKL606 4 YKL150w MCR1_YEAST P36060 302 MCR1 YKL605 1 YKL149c DBR1_YEAST P24309 405 DBR1; PRP26 YKL604 1 YKL148c DHSA_YEAST Q00711 640 SDHA; SDH1 YKL602 1 YKL147c YKO7_YEAST P36061 205 YKL601 6 YKL146w YKO6_YEAST P36062 692 YKL600 4 YKL145w PRS7_YEAST P33299 467 YTA3; CIM5 1 YKL144c RPCY_YEAST P35718 212 RPC25 YKL1; UNF1 1 YKL143w LTV1_YEAST P34078 463 LTV1 YKL2 2 YKL142w RT08_YEAST P35719 219 MRP8 YKL3 1 YKL141w SDH3_YEAST P33421 198 SDH3; CYB3 YKL4 1 YKL140w TGL1_YEAST P34163 548 TGL1 YKL5 2 YKL139w CTK1_YEAST Q03957 528 CTK1 1 YKL138c RM31_YEAST P14063 131 MRPL31 1 YKL137w YKN7_YEAST P36064 103 6 YKL136w YKN6_YEAST P36065 132 7 YKL135c ADB2_YEAST P36000 726 APL2 1 YKL134c PMIP_YEAST P35999 772 MIP1 1 YKL133c YKN3_YEAST P36066 463 4 YKL132c FOLC_YEAST P36001 430 3 YKL131w YKN1_YEAST P36067 173 6 YKL130c YKN0_YEAST P36068 246 6 YKL129c MYS3_YEAST P36006 1273 MYO3 1 YKL128c YKM8_YEAST P36069 295 6 YKL127w PGMU_YEAST P33401 570 PGM1 1 YKL126w YPK1_YEAST P12688 680 YPK1 1 YKL125w RRN3_YEAST P36070 627 RRN3 1 YKL124w YKM4_YEAST P32343 579 YKL529 4 YKL123w YKM3_YEAST P36071 126 6 YKL122c SR21_YEAST P32342 167 SRP21 YKL527 6 YKL121w YKM1_YEAST P32330 852 YKL525 4 YKL120w PMT_YEAST P32332 324 PMT; PMT1 YKL522 2 YKL119c VM12_YEAST P32341 215 VMA12; VPH2; CLS10 YKL520 2 YKL118w YKL8_YEAST P36072 103 7 YKL117w YKL7_YEAST P28707 216 YKL518 6 YKL116c KKL6_YEAST P28708 518 YKL516 3 YKL115c YKL5_YEAST P36073 130 6 YKL114c APN1_YEAST P22936 366 APN1 YKL513 1 YKL113c RA27_YEAST P26793 382 RAD27; RTH1 YKL510 1 YKL112w BAF1_YEAST P14164 731 BAF1; ABF1; OBF1 YKL505 1 YKL111c YKL1_YEAST P36074 111 7 YKL110c KT12_YEAST P34253 313 KTI12 YKL500; YKL446 2 YKL109w HAP4_YEAST P14064 554 HAP4 YKL465 1 YKL108w YKK8_YEAST P34252 453 YKL463 6 YKL107w YKK7_YEAST P34251 309 YKL462 6 YKL106w AATM_YEAST Q01802 451 AAT1 YKL461 1 YKL105c YKK5_YEAST P34250 1132 YKL459 5 YKL104c GFA1_YEAST P14742 717 GFA1 YKL457 1 YKL103c AMPL_YEAST P14904 514 APE1; LAP4 YKL455 1 YKL102c YKK2_YEAST P34249 101 YKL454 6 YKL101w KKK1_YEAST P34244 1518 YKL453 3 YKL100c YKK0_YEAST P34248 587 YKL450 4 YKL099c YKJ9_YEAST P34247 256 YKL449 4 YKL098w YKJ8_YEAST P34246 357 YKL448 6 YKL097c YKJ7_YEAST P34245 136 YKL445 6 YKL096Bw CWP2_YEAST P43497 92 CWP2; LPR1 YKL444 1 YKL096w CWP1_YEAST P28319 239 CWP1 YKL443; YJU1 1 YKL095w YKJ5_YEAST P28320 278 YKL442; YJU2 2 YKL094w YKJ4_YEAST P28321 313 YKL441; YJU3 5 YKL093w MBR1_YEAST P23493 339 MBR1 YKL440 2 YKL092c BUD2_YEAST P33314 1104 BUD2; CLA2; ERC25 YKL424 1 YKL091c YKJ1_YEAST P33324 310 3 YKL090w YKJ0_YEAST P36075 443 6 YKL089w MIF2_YEAST P35201 549 MIF2 1 YKL088w YKI8_YEAST P36076 571 4 YKL087c CYT2_YEAST Q00873 224 CYT2 1 YKL086w YKI6_YEAST P36077 127 6 YKL085w MDHM_YEAST P17505 334 MDH1 1 YKL084w YKI4_YEAST P36078 116 6 YKL083w YKI3_YEAST P36079 204 7 YKL082c YKI2_YEAST P36080 434 6 YKL081w EF1H_YEAST P36008 412 TEF4 1 YKL080w VATC_YEAST P31412 392 VMA5; VAT3; VATC YKL410 1 YKL079w SMY1_YEAST P32364 656 SMY1 YKL409 2 YKL078w YKH8_YEAST P36009 735 YKL408 3 YKL077w YKH7_YEAST P36081 392 6 YKL076c YKH6_YEAST P36082 127 6 YKL075c YKH5_YEAST P36083 450 6 YKL074c MUD2_YEAST P36084 527 MUD2 YKL358 1 YKL073w LHS1_YEAST P36016 881 LHS1 YKL355 1 YKL072w YKH2_YEAST P36085 766 YKL352 4 YKL071w YKH1_YEAST P36086 256 4 YKL070w YKH0_YEAST P36087 169 YKL343 5 YKL069w YKG9_YEAST P36088 180 YKL340 6 YKL068w N100_YEAST Q02629 959 NSP100; NUP100 YKL336 1 YKL067w NDK_YEAST P36010 153 NDK1; YNK1; YNK YKL333 3 YKL066w YKG6_YEAST P36089 147 YKL332 6 YKL065c YKG5_YEAST P35723 206 YKL331 4 YKL064w MNR2_YEAST P35724 969 MNR2 2 YKL063c YKG3_YEAST P35725 167 YKL327 6 YKL062w MSN4_YEAST P33749 630 MSN4 2 YKL061w YKG1_YEAST P35727 113 YKL321 6 YKL060c ALF_YEAST P14540 358 FBA1 YKL320 1 YKL059c YKF9_YEAST P35728 441 YKL316 6 YKL058w TOA2_YEAST P32774 122 TOA2 1 YKL057c N120_YEAST P35729 1037 NUP120; RAT2 YKL314; YKL313 1 YKL056c TCTP_YEAST P35691 167 YKL312 2 YKL055c YKF5_YEAST P35731 278 3 YKL054c YKF4_YEAST P35732 738 YKL308 6 YKL053w YKF3_YEAST P35733 124 YKL307 6 YKL052c YKF2_YEAST P35734 292 YKL306 6 YKL051w YKF1_YEAST P35735 353 YKL303 6 YKL050c YKF0_YEAST P35736 922 YKL301; YKL263 4 YKL049c CSE4_YEAST P36012 229 CSE4 YKL262 1 YKL048c ELM1_YEAST P32801 640 ELM1 YKL261 1 YKL047w YKE7_YEAST P36090 516 YKL260 6 YKL046c YKE6_YEAST P36091 449 YKL259 4 YKL045w PRI2_YEAST P20457 528 PRI2 YKL258 1 YKL044w YKE4_YEAST P36092 106 YKL257 6 YKL043w PHD1_YEAST P36093 366 PHD1 YKL256 1 YKL042w SP42_YEAST P36094 363 SPC42 YKL255 2 YKL041w YKE1_YEAST P36095 224 YKL254 6 YKL040c YKE0_YEAST P32860 256 YKL253 4 YKL039w PTM1_YEAST P32857 531 PTM1 YKL252 2 YKL038w YKD8_YEAST P32862 1170 YKL251 3 YKL037w YKD7_YEAST P32858 118 YKL250 6 YKL036c YKD6_YEAST P32859 130 YKL249 6 YKL035w UDPG_YEAST P32861 499 YKL248 3 YKL034w YKD4_YEAST P36096 758 YKL247 5 YKL033w YKD3_YEAST P36097 1038 YKL246 6 YKL032c IXR1_YEAST P33417 597 IXR1 YKL245 1 YKL031w YKD1_YEAST P36098 137 YKL244 7 YKL030w YKD0_YEAST P36099 201 YKL243 6 YKL029c MAOX_YEAST P36013 669 3 YKL028w T2EA_YEAST P36100 482 TFA1 1 YKL027w YKC7_YEAST P36101 447 4 YKL026c GSHH_YEAST P36014 167 3 YKL025c PAN3_YEAST P36102 679 PAN3 1 YKL024c UMPK_YEAST P15700 204 URA6; SOC8 1 YKL023w YKC3_YEAST P36103 277 6 YKL022c CC16_YEAST P09798 840 CDC16 2 YKL021c MK11_YEAST P20484 468 MAK11 2 YKL020c SP23_YEAST P35210 1082 SPT23 2 YKL019w RAM2_YEAST P29703 316 RAM2 1 YKL018w YKB8_YEAST P36104 329 5 YKL017c YKB7_YEAST P34243 683 5 YKL016c ATP7_YEAST P30902 173 ATP7 1 YKL015w PUT3_YEAST P25502 979 PUT3 1 YKL014c YKB4_YEAST P34241 1764 6 YKL013c AR20_YEAST P33204 171 ARC19 YKL166 1 YKL012w PR40_YEAST P33203 583 PRP40 YKL165 1 YKL011c CCE1_YEAST Q03702 353 CCE1 YKL164 1 YKL010c UFD4_YEAST P33202 1483 UFD4 YKL162 1 YKL009w YKA9_YEAST P33201 236 YKL160 5 YKL008c YKA8_YEAST P28496 418 YKL156 3 YKL007w CAPA_YEAST P28495 268 CAP1 YKL155 1 YKL006Bc SFT1_YEAST P43682 97 SFT1 1 YKL006w R14A_YEAST P36105 138 RPL14A YKL153 1 YKL005c YKA5_YEAST P36106 594 YKL150 5 YKL004w AUR1_YEAST P36107 401 AUR1 2 YKL003c RT17_YEAST P28778 131 MRP17 1 YKL002w YKA2_YEAST P36108 151 6 YKL001c KAPS_YEAST Q02196 202 MET14 1 YKR001c VPS1_YEAST P21576 704 VPS1; SPO15; LAM1 2 YKR002w PAP_YEAST P29468 568 PAP1 1 YKR003w YKY3_YEAST Q02201 448 YK102 4 YKR004c YKY4_YEAST Q02202 292 YK103 6 YKR005c YKY5_YEAST Q02203 447 YK104 6 YKR006c RM13_YEAST Q02204 275 MRPL13 YK105 1 YKR007w YKY7_YEAST Q02205 184 YK106 6 YKR008w YKY8_YEAST Q02206 625 YK107 4 YKR009c FOX2_YEAST Q02207 900 FOX2 YK108 1 YKR010c YKY0_YEAST Q02208 771 YK109 4 YKR011c YKZ1_YEAST Q02209 353 YK110 4 YKR012c YKZ2_YEAST P36109 125 6 YKR013w YKZ3_YEAST P36110 329 YK111 4 YKR014c YP52_YEAST P36018 234 YPT52 YK112 2 YKR015c YKZ5_YEAST P36111 568 4 YKR016w YKZ6_YEAST P36112 540 6 YKR017c YKZ7_YEAST P36113 551 3 YKR018c YKZ8_YEAST P36114 725 4 YKR019c YKZ9_YEAST P36115 615 4 YKR020w YK00_YEAST P36116 164 6 YKR021w YK01_YEAST P36117 915 4 YKR022c YK02_YEAST P36118 322 6 YKR023w YK03_YEAST P36119 530 6 YKR024c DBP7_YEAST P36120 742 DBP7 2 YKR025w YK05_YEAST P36121 282 6 YKR026c E2BA_YEAST P14741 305 GCN3; AAS2; TIF221 1 YKR027w YK07_YEAST P36122 765 4 YKR028w SAP3_YEAST P36123 1033 SAP190 1 YKR029c YK09_YEAST P36124 751 4 YKR030w YK10_YEAST P36125 273 6 YKR031c SP14_YEAST P36126 1380 SPO14; PLD1 1 YKR032w YK12_YEAST P36127 104 6 YKR033c YK13_YEAST P36128 141 7 YKR034w DA80_YEAST P26343 269 DAL80; UGA43 1 YKR035c YK15_YEAST P36129 213 6 YKR036c YK16_YEAST P36130 659 4 YKR037c YK17_YEAST P36131 295 6 YKR038c YK18_YEAST P36132 421 3 YKR039w GAP1_YEAST P19145 602 GAP1 1 YKR040c YK20_YEAST P36133 167 6 YKR041w YK21_YEAST P36134 250 6 YKR042w YK22_YEAST P36135 450 4 YKR043c YK23_YEAST P36136 271 6 YKR044w YK24_YEAST P36137 443 6 YKR045c YK25_YEAST P36138 191 6 YKR046c YK26_YEAST P36139 283 6 YKR047w YK27_YEAST P36140 101 6 YKR048c NAP1_YEAST P25293 417 NAP1 1 YKR049c YK29_YEAST P36141 133 6 YKR050w TRK2_YEAST P28584 889 TRK2; RPD2 1 YKR051w YK31_YEAST P36142 418 4 YKR052c MRS4_YEAST P23500 304 MRS4 2 YKR053c YK33_YEAST P23501 404 4 YKR054c DYHC_YEAST P36022 4092 DYN1; DHC1 1 YKR055w RHO4_YEAST Q00246 291 RHO4 1 YKR056w RNC1_YEAST P33753 617 RNC1; NUD1 1 YKR057w RS21_YEAST P05760 87 RPS25 1 YKR058w GLG1_YEAST P36143 618 GLG1 1 YKR059w IF4A_YEAST P10081 395 TIF1; TIF41A 1 YKR060w YK40_YEAST P36144 274 6 YKR061w KTR2_YEAST P33550 425 KTR2 2 YKR062w T2EB_YEAST P36145 328 TFA2 1 YKR063c LAS1_YEAST P36146 502 LAS1 2 YKR064w YK44_YEAST P36023 863 3 YKR065c YK45_YEAST P36147 197 6 YKR066c CCPR_YEAST P00431 361 CCP1; CCP; CPO 1 YKR067w YK47_YEAST P36148 743 4 YKR068c YK48_YEAST P36149 193 6 YKR069w SUMT_YEAST P36150 593 MET1; MET20 1 YKR070w YK50_YEAST P36151 352 5 YKR071c YK51_YEAST P36152 348 6 YKR072c SIS2_YEAST P36024 562 SIS2; HAL3 2 YKR073c YK53_YEAST P36153 106 7 YKR074w YK54_YEAST P36154 155 6 YKR075c YK55_YEAST P36155 307 4 YKR076w YK56_YEAST P36156 370 4 YKR077w YK57_YEAST P36157 363 6 YKR078w YK58_YEAST P36158 585 6 YKR079c YK59_YEAST P36159 838 5 YKR080w MTD1_YEAST Q02046 320 MTD1 YKR400 1 YKR081c YK61_YEAST P36160 344 YKR401 6 YKR082w N133_YEAST P36161 1157 NUP133 YKR402 1 YKR083c YK63_YEAST P36162 133 YKR403 6 YKR084c HBS1_YEAST P32769 611 HBS1 YKR404 2 YKR085c RM20_YEAST P22354 195 MRPL20 YKR405 1 YKR086w PR16_YEAST P15938 1071 PRP16 YKR406 1 YKR087c YK67_YEAST P36163 314 YKR407 6 YKR088c YK68_YEAST P36164 337 YKR408 6 YKR089c YK69_YEAST P36165 910 YKR409 6 YKR090w YK70_YEAST P36166 706 4 YKR091w YK71_YEAST P36167 152 YKR411 6 YKR092c SR40_YEAST P32583 406 SRP40 YKR412A 2 YKR093w PTR2_YEAST P32901 601 PTR2 YKR413 1 YKR094c UBIQ_YEAST P04838 76 UBI2 1 RL40_YEAST P14796 52 UBI2 1 YKR095w MLP1_YEAST Q02455 1875 MLP1 YKR415 2 YKR096w YK76_YEAST P36168 1195 4 YKR097w PPCK_YEAST P10963 549 PCK1; PPC1; PEPC 1 YKR098c UBPB_YEAST P36026 717 UBP11 1 YKR099w BAS1_YEAST P22035 811 BAS1 1 YKR100c YK80_YEAST P36169 241 4 YKR101w SIR1_YEAST P21691 678 SIR1 2 YKR102w YK82_YEAST P36170 1169 4 YKR103w YK83_YEAST P36028 1218 3 YKR104w YK84_YEAST P36171 306 3 YKR105c YK85_YEAST P36172 582 4 YKR106w YK86_YEAST P36173 615 4