------------------------------------------------------------------------------ SWISS-PROT Protein Sequence Data Bank. Release 36.0, July 1998 ------------------------------------------------------------------------------ Yeast Chromosome III entries ------------------------------------------------------------------------------ Amos Bairoch Email: bairoch@medecine.unige.ch Swiss Institute of Bioinformatics and University of Geneva Switzerland ------------------------------------------------------------------------------ Document name: YEAST3.TXT ------------------------------------------------------------------------------ ======================================== Yeast chromosome III open reading frames ======================================== The complete DNA sequence of chromosome III of the yeast S.cerevisiae has been determined in the framework of the European Union (EU) genomes sequencing programmes. See: Oliver S.G., et al. Nature 357:38-46(1992). Size of CHRIII: 315 Kb Total number of ORFs currently in SWISS-PROT: 176 ===================== ORF code nomenclature ===================== YX[L|R]ddd[w|c] Y = Yeast X = Letter representing the chromosome (in this case X is 'C' for CHRIII) L | R = 'L' is for Left arm; 'R' is for Right arm ddd = ORF number on the left or right arm c | w = 'c' is for complementary strand; 'w' is for Watson strand Since the original publication of yeast CHRIII some additional ORFs have been identified [1,2]; they have been assigned names that do not follow exactly the above conventions. These ORFs are: YCR20w-A; YCR24c-A; YCR29c-A; YCLx8c; YCRx13w; YCRx16c. [1] Slonimski P.P., Brouillet S.; Yeast 9:941-1029(1993). [2] Koonin E.V., Bork P., Sander C. EMBO J. 13:493-503(1994). ================== Categories of ORFs ================== 1: genetically and biochemically characterized 2: genetically characterized, but exact function not known 3: high similarity to a protein of characterized function 4: high similarity to a protein of uncharacterized function 5: low similarity to an existing protein 6: no known similarity (temporary assignment) 7: probable non-expressed ORF ---------- ---------- ------ ---- ------------------- --------------- ---- ORF SWISS-PROT S-PROT Size Gene name and ORF code Cat. code entry name AC a.a. synonyms synonyms ---------- ---------- ------ ---- ------------------- --------------- ---- YCL76w YCH6_YEAST P25602 196 6 YCL75w YCH5_YEAST P25601 146 TY5B 3 YCL74w YCH4_YEAST P25600 308 TY5A 3 YCL70c/ YCH0_YEAST P25596 615 4 71c/73c YCL69w YCG9_YEAST P25594 458 3 YCL68c YCG8_YEAST P25593 190 7 YCL67c MAT2_YEAST P01367 210 MATAL2; MAT2A 1 YCL66w MAT1_YEAST P01365 175 MATAL1; MAT1A 1 YCL65w YCG5_YEAST P37264 122 7 YCL64c STDH_YEAST P25379 360 CHA1 1 YCL63w YCG3_YEAST P25591 128 4 YCL62w YCG2_YEAST P25590 195 6 YCL61c YCG1_YEAST P25589 329 4 YCL60c YCG0_YEAST P25588 317 6 YCL59c YCF9_YEAST P25586 316 5 YCL58c YCF8_YEAST P25585 152 6 YCL57w PRTD_YEAST P25375 712 PRD1 1 YCL56c YCF6_YEAST P25584 144 YCL433 6 YCL55w YCF5_YEAST P25583 335 YCL432 6 YCL54w YCF4_YEAST P25582 724 YCL431 5 YCL53c YCF3_YEAST P25581 149 6 YCL52c PBN1_YEAST P25580 416 PBN1 2 YCL51w YCF1_YEAST P25579 586 6 YCL50c APA1_YEAST P16550 321 APA1; DTP1 1 YCL49c YCE9_YEAST P25577 312 6 YCL48w YCE8_YEAST P25380 463 5 YCL47c YCE7_YEAST P25576 258 6 YCL46w YCE6_YEAST P25575 107 6 YCL45c YCE5_YEAST P25574 760 YCL315 5 YCL44c YCE4_YEAST P25573 417 YCL314 6 YCL43c PDI_YEAST P17967 522 PDI1; MFP1; TRG1 YCL313 1 YCL42w YCE2_YEAST P25572 118 7 YCL41c YCE1_YEAST P25571 164 7 YCL40w HXKG_YEAST P17709 500 GLK1 YCL312 1 YCL39w YCD9_YEAST P25569 759 YCL311 3 YCL38c YCD8_YEAST P25568 528 4 YCL37c SRO9_YEAST P25567 466 SRO9 2 YCL36w YCD6_YEAST P25370 566 YCL187 6 YCL35c YCD5_YEAST P25373 110 3 YCL34w YCD4_YEAST P25369 212 YCL186 6 YCL33c YCD3_YEAST P25566 168 4 YCL32w ST50_YEAST P25344 346 STE50 2 YCL31c YCD1_YEAST P25368 297 YCL184 6 YCL30c HIS2_YEAST P00815 799 HIS4 YCL183 1 YCL29c BIK1_YEAST P11709 440 BIK1 1 YCL28w YCC8_YEAST P25367 405 YCL181 6 YCL27w FUS1_YEAST P11710 512 FUS1 2 YCL26c YCC6_YEAST P25564 119 7 YCLx8c YC08_YEAST P37261 192 4 YCL25c AGP1_YEAST P25376 633 AGP1 1 YCL24w KCC4_YEAST P25389 816 3 YCL23c YCC3_YEAST P25563 115 7 YCL22c YCC2_YEAST P25562 171 7 YCL21w YCC1_YEAST P25561 117 4 YCL20w YCC0_YEAST P25383 438 TY1A 3 YCL19w YCB9_YEAST P25384 1347 TY1B 3 YCL18w LEU3_YEAST P04173 364 LEU2 1 YCL17c NFS1_YEAST P25374 497 NFS1; SPL1 1 YCL16c YCB6_YEAST P25559 309 6 YCL14w/13w BUD3_YEAST P25558 1636 BUD3 2 YCL12w YCB2_YEAST P25556 152 6 YCL11c GBP2_YEAST P25555 427 GBP2; RLF6 1 YCL10c YCB0_YEAST P25554 146 6 YCL9c ILV6_YEAST P25605 309 ILV6 1 YCL8c YCA8_YEAST P25604 119 3 YCL7c CW36_YEAST P25603 130 CWH36 2 YCL6c YCA6_YEAST P25595 109 6 YCL5w YCA5_YEAST P25587 254 6 YCL4w/3w PEL1_YEAST P25578 518 PEL1 2 YCL2c YCA2_YEAST P25565 126 7 YCL1w RER1_YEAST P25560 188 RER1 2 YCR1w YCP2_YEAST P25347 104 YCR021 6 YCR2c CC10_YEAST P25342 322 CDC10 YCR022 2 YCR3w RM32_YEAST P25348 183 MRPL32 YCR041 1 YCR4c YCP4_YEAST P25349 247 YCR042 4 YCR5c CISZ_YEAST P08679 460 CIT2 YCR043 1 YCR6c YCP6_YEAST P25350 157 YCR044 7 YCR7c YCP7_YEAST P25354 239 YCR045 4 YCR8w KCR8_YEAST P25333 603 YCR101; YCR046 3 YCR9c R161_YEAST P25343 265 RVS161; SPE161; END6 1 YCR10c YCQ0_YEAST P25613 283 4 YCR11c ADP1_YEAST P25371 1049 ADP1 YCR105 3 YCR12w PGK_YEAST P00560 416 PGK1 1 YCR13c YCQ3_YEAST P25614 215 7 YCR14c DPO4_YEAST P25615 582 POL4 1 YCR15c YCQ5_YEAST P25616 317 6 YCR16w YCQ6_YEAST P25617 290 6 YCR17c YCQ7_YEAST P25618 953 6 YCR18c SRD1_YEAST P09007 225 SRD1 1 YCR19w MK32_YEAST P23060 363 MAK32 2 YCR20c PT18_YEAST P25362 215 PET18; HIT2 2 YCR20w-A MK31_YEAST P23059 88 MAK31 2 YCR21c HS30_YEAST P25619 332 HSP30 1 YCR22c YCR2_YEAST P25620 114 6 YCR23c YCR3_YEAST P25351 611 YCR241 3 YCR24c SYNM_YEAST P25345 492 YCR242 1 YCR24c-A PMP1_YEAST P32903 40 PMP1 1 YCR25c YCR5_YEAST P25352 136 YCR244 6 YCR26c YCR6_YEAST P25353 743 YCR246 4 YCR27c YCR7_YEAST P25378 209 3 YCR28c YCR8_YEAST P25621 512 3 YCR29c YCR9_YEAST P25622 140 6 YCR29c-A RIM1_YEAST P32445 135 RIM1 1 YCR30c YCS0_YEAST P25623 657 6 YCR31c R141_YEAST P06367 137 CRY1; RP59 1 YCR32w YCS2_YEAST P25356 2167 YCR591; YCR601 4 YCR33w YCS3_YEAST P25357 1226 YCR592 5 YCR34w GNS1_YEAST P25358 347 GNS1 YCR521 2 YCR35c RR43_YEAST P25359 394 RRP43 YCR522 1 YCR36w RBSK_YEAST P25332 333 RBK1 YCR523 1 YCR37c PH87_YEAST P25360 923 PHO87 YCR524 1 YCR38c BUD5_YEAST P25300 538 BUD5 YCR526 1 YCR39c MAT2_YEAST P01367 210 MATAL2; MAT2A 1 YCR40w MAT1_YEAST P01365 175 MATAL1; MAT1A 1 YCR41w YCT1_YEAST P37265 110 6 YCR42c T2D2_YEAST P23255 1407 TAF150; TSM1 YCR724 1 YCR43c YCT3_YEAST P25361 127 YCR725 6 YCR44c YCT4_YEAST P25625 357 7 YCR45c YCT5_YEAST P25381 491 3 YCR46c YCT6_YEAST P25626 169 6 YCR47c YCT7_YEAST P25627 275 3 YCR48w ARE1_YEAST P25628 610 ARE1; SAT2 1 YCR49c YCT9_YEAST P25629 148 6 YCR50c YCU0_YEAST P25630 102 6 YCR51w YCU1_YEAST P25631 222 5 YCR52w YCU2_YEAST P25632 483 3 YCR53w THRC_YEAST P16120 514 THR4 1 YCR54c YCU4_YEAST P25355 563 CTR86 5 YCR55c/57c PWP2_YEAST P25635 923 PWP2 2 /58c YCR56w YCU6_YEAST P25634 122 7 YCR59c YCU9_YEAST P25637 258 4 YCR60w YCV0_YEAST P25638 111 5 YCR61w YCV1_YEAST P25639 583 5 YCR62w YCV2_YEAST P25363 120 YCR904 5 YCR63w G10_YEAST P25337 157 YCR903 4 YCR64c YCV4_YEAST P25640 136 6 YCR65w HCM1_YEAST P25364 564 HCM1 YCR902 1 YCR66w RA18_YEAST P10862 487 RAD18 1 YCR67c SED4_YEAST P25365 1065 SED4 YCR901 1 YCR68w YCV8_YEAST P25641 429 6 YCR69w/70w CYPR_YEAST P25334 318 CPR4; CYP4; SCC3 1 YCR71c YCW1_YEAST P25642 121 5 YCR72c YCW2_YEAST P25382 514 3 YCR73c SS22_YEAST P25390 1314 SSK22 1 YCRx13w SOL2_YEAST P37262 315 SOL2 2 YCR74c YCW4_YEAST P25643 106 7 YCR75c ERS1_YEAST P17261 260 ERS1 2 YCR76c YCW6_YEAST P25659 250 6 YCR77c PAT1_YEAST P25644 797 PAT1 2 YCR79w YCW9_YEAST P25646 435 YCR79c 6 YCR80w YCX0_YEAST P25647 151 6 YCR81w SRB8_YEAST P25648 1226 SRB8 2 YCR82w YCX2_YEAST P25649 128 6 YCR83w YCX3_YEAST P25372 127 3 YCR84c TUP1_YEAST P16649 713 TUP1; AER2; SFL2; 1 CYC9; UMR7; FLK1; AAR1; AMM1 YCR85w YCX5_YEAST P25650 117 6 YCR86w YCX6_YEAST P25651 190 6 YCR87w YCX7_YEAST P25652 171 7 YCRx16c YC16_YEAST P37263 153 5 YCR88w ABP1_YEAST P15891 592 ABP1 1 YCR89w FIG2_YEAST P25653 1609 FIG2 YCR1102 2 YCR90c YCY0_YEAST P25654 182 YCR1104 6 YCR91w KI82_YEAST P25341 726 KIN82 YCR1153 1 YCR92c MSH3_YEAST P25336 1047 MSH3 YCR1152 1 YCR93w NOT1_YEAST P25655 2108 NOT1; CDC39; ROS1 YCR1151 1 YCR94w YCY4_YEAST P25656 391 4 YCR95c YCY5_YEAST P25366 362 YCR131 6 YCR96c MAT2_YEAST P01367 210 MATAL2; MAT2A 1 YCR97w MTA1_YEAST P01366 126 MATA1; MAT1A 1 MTA0_YEAST P09091 130 1 YCR98c YCY8_YEAST P25346 518 YCR137 3 YCR99c YCY9_YEAST P25657 155 3 YCR100c YCZ0_YEAST P25606 316 3 YCR101c YCZ1_YEAST P25607 182 3 YCR102c YCZ2_YEAST P25608 368 4 YCR103c YCZ3_YEAST P25609 111 4 YCR104w PAU3_YEAST P25610 124 PAU3 2 YCR105w YCZ5_YEAST P25377 361 3 YCR106w YCZ6_YEAST P25611 832 3 YCR107w YCZ7_YEAST P25612 363 5