------------------------------------------------------------------------------ SWISS-PROT Protein Sequence Data Bank. Release 36.0, July 1998 ------------------------------------------------------------------------------ Yeast Chromosome V entries ------------------------------------------------------------------------------ Amos Bairoch Email: bairoch@medecine.unige.ch Swiss Institute of Bioinformatics and University of Geneva Switzerland ------------------------------------------------------------------------------ Document name: YEAST5.TXT ------------------------------------------------------------------------------ ====================================== Yeast chromosome V open reading frames ====================================== Size of CHRV: 577 Kb Total number of ORFs currently in SWISS-PROT: 267 ===================== ORF code nomenclature ===================== YX[L|R]ddd[w|c] Y = Yeast X = Letter representing the chromosome (in this case X is 'E' for CHRV) L | R = 'L' is for Left arm; 'R' is for Right arm ddd = ORF number on the left or right arm c | w = 'c' is for complementary strand; 'w' is for Watson strand ================== Categories of ORFs ================== 1: genetically and biochemically characterized 2: genetically characterized, but exact function not known 3: high similarity to a protein of characterized function 4: high similarity to a protein of uncharacterized function 5: low similarity to an existing protein 6: no known similarity (temporary assignment) 7: probable non-expressed ORF ---------- ---------- ------ ---- ------------------- --------------- ---- ORF SWISS-PROT S-PROT Size Gene name and ORF code Cat. code entry name AC a.a. synonyms synonyms ---------- ---------- ------ ---- ------------------- --------------- ---- YEL076c YEI6_YEAST P39971 216 YEL075c YEI5_YEAST P39972 122 4 YEL074w YEI4_YEAST P39973 112 YEL073c YEI3_YEAST P39974 107 YEL072w YEI2_YEAST P39975 231 YEL071w YEI1_YEAST P39976 496 3 YEL070w YEI0_YEAST P39941 502 3 YEL069c HXTC_YEAST P39924 564 HXT13; HXT8 1 YEL068c YEH8_YEAST P39977 110 YEL067c YEH7_YEAST P39978 195 YEL066w YEH6_YEAST P39979 179 YEL065w YEH5_YEAST P39980 628 YEL064c YEH4_YEAST P39981 480 5 YEL063c CAN1_YEAST P04817 590 CAN1 1 YEL062w NPR2_YEAST P39923 624 NPR2 2 YEL061c CIN8_YEAST P27895 1038 CIN8; KSL2 1 YEL060c PRTB_YEAST P09232 635 PRB1 1 YEL059Bc SOM1_YEAST Q05676 74 SOM1 2 YEL059w YEG9_YEAST P39982 102 6 YEL058w PCM1_YEAST P38628 557 PCM1; AGM1 1 YEL057c YEG7_YEAST P39983 233 YEL056w HAT2_YEAST P39984 401 HAT2 1 YEL055c YEG5_YEAST P39985 1022 5 YEL054c RL12_YEAST P17079 165 RPL15B 1 YEL053c MK10_YEAST Q02197 733 MAK10 2 YEL052w AFG1_YEAST P32317 509 AFG1; AFG 2 YEL051w VATD_YEAST P32610 256 VMA8 SYGP-ORF11 1 YEL050c YEG0_YEAST P32611 393 SYGP-ORF37 3 YEL049w PAU2_YEAST P32612 120 PAU2 SYGP-ORF12 2 YEL048c YEF8_YEAST P32613 152 SYGP-ORF36 YEL047c YEF7_YEAST P32614 470 SYGP-ORF35 3 YEL046c GLY1_YEAST P37303 387 GLY1 SYGP-ORF34 2 YEL045c YEF5_YEAST P32616 141 SYGP-ORF33 YEL044w YEF4_YEAST P32617 166 SYGP-ORF13 YEL043w YEF3_YEAST P32618 956 SYGP-ORF14 YEL042w GDA1_YEAST P32621 518 GDA1 SYGP-ORF16 1 YEL041w YEF1_YEAST P32622 495 SYGP-ORF17 3 YEL040w UTR2_YEAST P32623 347 UTR2 SYGP-ORF18 2 YEL039c CYC7_YEAST P00045 113 CYC7; CYP3 1 YEL038w UTR4_YEAST P32626 241 UTR4 SYGP-ORF20 2 YEL037c RA23_YEAST P32628 398 RAD23 SYGP-ORF29 1 YEL036c ANP1_YEAST P32629 493 ANP1; GEM3 SYGP-ORF28 1 YEL035c UTR5_YEAST P32630 166 UTR5 SYGP-ORF27 2 YEL034w IF52_YEAST P23301 157 HYP2; TIF51A SYGP-ORF21 1 YEL033w YED3_YEAST P32633 139 SYGP-ORF22 YEL032w MCM3_YEAST P24279 971 MCM3 SYGP-ORF23 1 YEL031w ATC6_YEAST P39986 1215 3 YEL030w YED0_YEAST P39987 644 3 YEL029c YEC9_YEAST P39988 312 3 YEL028w YEC8_YEAST P39989 153 6 YEL027w VATL_YEAST P25515 160 VMA3; CLS7; CUP5; GEF2 1 YEL026w NHPX_YEAST P39990 126 3 YEL025c YEC5_YEAST P39991 1188 YEL024w UCRI_YEAST P08067 215 RIP1 1 YEL023c YEC3_YEAST P39992 682 YEL022w YEC2_YEAST P39993 1459 4 YEL021w DCOP_YEAST P03962 267 URA3 1 YEL020c YEC0_YEAST P39994 560 3 YEL019c MM21_YEAST P38632 267 MMS21 2 YEL018w YEB8_YEAST P39995 279 YEL017Bc PMP2_YEAST P40975 43 PMP2 1 YEL017w YEB7_YEAST P39996 337 YEL016c YEB6_YEAST P39997 493 4 YEL015w YEB5_YEAST P39998 551 YEL014c YEB4_YEAST P39999 101 YEL013w VAC8_YEAST P39968 578 VAC8 2 YEL012w UBC8_YEAST P28263 218 UBC8 1 YEL011w GLGB_YEAST P32775 704 GLC3 1 YEL010w YEB0_YEAST P40000 116 YEL009c GCN4_YEAST P03069 281 GCN4; ARG9; AAS3 1 YEL008w YEA8_YEAST P40001 126 YEL007w YEA7_YEAST P40002 666 4 YEL006w YEA6_YEAST P39953 335 3 YEL005c YEA5_YEAST P40003 282 YEL004w YEA4_YEAST P40004 342 YEL003w YEA3_YEAST P40005 123 YEL002c OSTB_YEAST P33767 430 WBP1 1 YEL001c YEA1_YEAST P40006 225 YER002w YEJ2_YEAST P40007 231 YER003c MANA_YEAST P29952 429 PMI40 1 YER004w YEJ4_YEAST P40008 231 4 YER005w YEJ5_YEAST P40009 630 3 YER006w YEJ6_YEAST P40010 520 4 YER007w PAC2_YEAST P39937 518 PAC2 2 YER008c SEC3_YEAST P33332 1336 SEC3; PSL1 2 YER009w NTF2_YEAST P33331 125 NTF2 1 YER010c YEK0_YEAST P40011 234 YER011w TIR1_YEAST P10863 254 TIR1; SRP1 2 YER012w PRCB_YEAST P22141 198 PRE1 1 YER013w PR22_YEAST P24384 1145 PRP22 1 YER014w PPOX_YEAST P40012 539 HEM14 1 YER015w LCF2_YEAST P39518 744 FAA2; FAM1 1 YER016w BIM1_YEAST P40013 344 BIM1 2 YER017c AFG3_YEAST P39925 761 AFG3 2 YER018c YEK8_YEAST P40014 221 YER019w YEK9_YEAST P40015 477 YER019Bc S6B2_YEAST P52871 88 SEB2; SBH2 1 YER020w GBA2_YEAST P10823 449 GPA2; SSP101 1 YER021w SUN2_YEAST P40016 523 SUN2 2 YER022w SRB4_YEAST P32569 687 SRB4 1 YER023w PROC_YEAST P32263 286 PRO3; ORE2 1 YER024w YEL4_YEAST P40017 923 3 YER025w IF2G_YEAST P32481 527 GCD11; TIF213 1 YER026c PSS_YEAST P08456 276 CHO1; PSS1; PSS 1 YER027c GA83_YEAST Q04739 417 GAL83; SPM1 2 YER028c YEL8_YEAST P39943 394 3 YER029c YEL9_YEAST P40018 196 3 YER030w YEM0_YEAST P40019 160 YER031c YPT8_YEAST P38555 223 YPT8; YPT31 1 YER032w PIP1_YEAST P40020 925 PIP1; FIR1 2 YER033c YEM3_YEAST P40021 1076 YER034w YEM4_YEAST P40022 185 YER035w YEM5_YEAST P40023 145 5 YER036c YEM6_YEAST P40024 610 3 YER037w YEM7_YEAST P40025 321 4 YER038c YEM8_YEAST P40026 464 YER039c YEM9_YEAST P40027 249 3 YER040w GLN3_YEAST P18494 730 GLN3 1 YER041w YEN1_YEAST P40028 759 YER042w PMSR_YEAST P40029 184 5 YER043c SAHH_YEAST P39954 449 SAH1 1 YER044c YEN4_YEAST P40030 148 YER044Bc MEI4_YEAST P29467 450 MEI4 2 YER045c YEN5_YEAST P39970 489 3 YER046w YEN6_YEAST P40031 143 6 YER047c SAP1_YEAST P39955 897 SAP1 2 YER048c CAJ1_YEAST P39101 391 CAJ1 1 YER049w YEN9_YEAST P40032 644 YER050c YEO0_YEAST P40033 202 YER051w YEO1_YEAST P40034 492 4 YER052c AK_YEAST P10869 527 HOM3 1 YER053c YEO3_YEAST P40035 300 3 YER054c GIP2_YEAST P40036 548 GIP2 2 YER055c HIS1_YEAST P00498 297 HIS1 1 YER056c FCY2_YEAST P17064 533 FCY2 1 YER057c YEO7_YEAST P40037 129 4 YER058w PT17_YEAST Q02771 107 PET117 1 YER059w YEO9_YEAST P40038 420 4 YER060w YEP0_YEAST P40039 528 FCYY 3 YER061c CEM1_YEAST P39525 442 CEM1 1 YER062c GPP2_YEAST P40106 250 GPP2 1 YER063w YEP3_YEAST P40040 218 YER064c YEP4_YEAST P40041 505 YER065c ACEA_YEAST P28240 557 ICL1 1 YER066w YEP6_YEAST P40042 185 3 YER067w YEP7_YEAST P40043 161 4 YER068w NOT4_YEAST P34909 587 NOT4; MOT2; SSF1; SIG1; CCL1 2 YER069w AR56_YEAST Q01217 863 ARG5,6 1 YER070w RIR1_YEAST P21524 888 RNR1 1 YER071c YEQ1_YEAST P40045 126 YER072w YEQ2_YEAST P40046 129 YER073w DHA3_YEAST P40047 520 ALD3 1 YER074w RS24_YEAST P26782 135 RPS24EA 1 YER075c PTP3_YEAST P40048 928 PTP3 1 YER076c YEQ6_YEAST P40049 302 3 YER077c YEQ7_YEAST P40050 688 YER078c YEQ8_YEAST P40051 511 3 YER079w YEQ9_YEAST P40052 210 YER080w YER0_YEAST P40053 627 YER081w SERX_YEAST P40054 469 3 YER082c YER2_YEAST P40055 554 YER083c YER3_YEAST P40056 307 YER084w YER4_YEAST P40057 128 YER085c YER5_YEAST P40058 173 YER086w THDH_YEAST P00927 576 ILV1 1 YER087w SYPC_YEAST P39965 576 3 YER087Bc S6B1_YEAST P52870 82 SEB1; SBH1 1 YER088c YER8_YEAST P40059 670 4 YER089c P2C2_YEAST P39966 464 PTC2 1 YER090w TRPE_YEAST P00899 507 TRP2 1 YER091c METE_YEAST P05694 767 MET6 1 YER092w YES2_YEAST P40060 125 YER093c YES3_YEAST P40061 1430 4 YER094c PRCY_YEAST P25451 205 PUP3 1 YER095w RA51_YEAST P25454 400 RAD51 1 YER096w YES6_YEAST P39000 512 3 YER097w YES7_YEAST P40062 109 YER098w UBP9_YEAST P39967 754 UBP9 1 YER099c KPR2_YEAST P38620 318 PRPS2; PRS 1 YER100w UBC6_YEAST P33296 250 UBC6; DOA2 1 YER101c AST2_YEAST P39945 430 AST2 2 YER102w RS8_YEAST P05754 200 RPS8B 1 YER103w HS74_YEAST P22202 642 SSA4 1 YER104w YET4_YEAST P40063 208 4 YER105c N157_YEAST P40064 1391 NUP157 1 YER106w YET6_YEAST P40065 302 YER107c YET7_YEAST P40066 365 3 YER109c/ FLO8_YEAST P40068 799 FLO8; PDH5 2 108c YER110c IMB4_YEAST P40069 1113 KAP123; YRB4 1 YER111c SWI4_YEAST P25302 1093 SWI4 1 YER112w USS1_YEAST P40070 187 USS1; SDB23 1 YER113c YEU3_YEAST P40071 706 3 YER114c BOI2_YEAST P39969 1040 BOI2; BEB1 2 YER115c SPR6_YEAST Q01684 191 SPR6 2 YER116c YEU6_YEAST P40072 274 3 YER117w RL1A_YEAST P04451 137 RPL17B 1 YER118c SS81_YEAST P40073 367 SSU81 2 YER119c YEU9_YEAST P40074 448 4 YER120w SCS2_YEAST P40075 244 SCS2 2 YER121w YEV1_YEAST P40076 114 YER122c GLO3_YEAST P38682 493 GLO3 2 YER123w CK13_YEAST P39962 524 YCK3; CKI3 1 YER124c YEV4_YEAST P40077 573 SYGP-ORF48 YER125w RSP5_YEAST P39940 809 RSP5; NPL1 SYGP-ORF41 2 YER126c YEV6_YEAST P40078 261 SYGP-ORF47 YER127w YEV7_YEAST P40079 357 SYGP-ORF43 YER128w YEV8_YEAST P40080 203 SYGP-ORF44 YER129w PAK1_YEAST P38990 1142 PAK1 SYGP-ORF45 1 YER130c YEW0_YEAST P39959 443 3 YER131w R26B_YEAST P39939 119 RPS26B 1 YER132c YEW2_YEAST P32634 1753 SYGP-ORF50 3 YER133w PP12_YEAST P32598 312 GLC7; DIS2; CID1 1 YER134c YEW4_YEAST P40081 178 YER135c YEW5_YEAST P40082 130 YER136w GDI1_YEAST P39958 451 GDI1; SEC19 1 YER137c YEW7_YEAST P40083 148 YER139c YEW9_YEAST P40084 226 YER140w YEX0_YEAST P40085 556 YER141w COXW_YEAST P40086 486 COX15 1 YER142c MAG_YEAST P22134 296 MAG1; MAG 1 YER143w DDI1_YEAST P40087 428 DDI1 2 YER144c UBP5_YEAST P39944 805 UBP5 1 YER145c FTR1_YEAST P40088 404 FTR1 1 YER146w YEX6_YEAST P40089 93 3 YER147c YEX7_YEAST P40090 624 3 YER148w TF2D_YEAST P13393 240 SPT15; BTF1 1 YER149c PEA2_YEAST P40091 420 PEA2; PPF2 2 YER150w YEY0_YEAST P40092 148 3 YER151c UBP3_YEAST Q01477 912 UBP3 1 YER152c YEY2_YEAST P10356 443 YER153c PT22_YEAST P10355 254 PET122 1 YER154w OXA1_YEAST P39952 402 OXA1; PET1402 2 YER155c BEM2_YEAST P39960 2167 BEM2; IPL2; SUP9 1 YER156c YEY6_YEAST P40093 338 YER157w YEY7_YEAST P40094 801 YER158c YEY8_YEAST P40095 573 3 YER159c NCB1_YEAST P40096 142 NCB1 1 YER161c SPT2_YEAST P06843 333 SPT2; SPM2; SIN1 2 YER162c RAD4_YEAST P14736 754 RAD4 1 YER163c YEZ3_YEAST P32656 232 SYGP-ORF3 YER164w CHD1_YEAST P32657 1468 CHD1 SYGP-ORF4 2 YER165w PABP_YEAST P04147 577 PAB1 1 YER166w ATC5_YEAST P32660 1571 SYGP-ORF7 3 YER167W BCK2_YEAST P33306 851 BCK2; CTR7 2 YER168c TNT_YEAST P21269 546 CCA1; TNT1 1 YER169w YEZ9_YEAST P39956 796 3 YER170w KAD2_YEAST P26364 225 ADK2; PAK3 1 YER171w RAD3_YEAST P06839 778 RAD3; REM1 1 YER172c BRR2_YEAST P32639 2163 BRR2; RSS1 SYGP-ORF66 1 YER173w RA24_YEAST P32641 659 RAD24 SYGP-ORF60 1 YER174c YE04_YEAST P32642 244 SYGP-ORF64 4 YER175c YE05_YEAST P32643 299 SYGP-ORF63 4 YER176w YE06_YEAST P32644 1121 SYGP-ORF61 3 YER177w BMH1_YEAST P29311 267 BMH1 1 YER178w ODPA_YEAST P16387 420 PDA1 1 YER179w DMC1_YEAST P25453 334 DMC1; ISC2 1 YER180c ISC1_YEAST P32645 267 ISC10 SYGP-ORF62 2 YER181c YE11_YEAST P40097 107 YER182w YE12_YEAST P40098 244 YER183c YE13_YEAST P40099 211 YER184c YE14_YEAST P39961 794 3 YER185w YE15_YEAST P40100 303 3 YER186c YE16_YEAST P40101 306 YER187w YE17_YEAST P40102 141 3 YER188w YE18_YEAST P40103 239 YER189w YE19_YEAST P40104 122 4 YER190w YE20_YEAST P40105 1681 4