------------------------------------------------------------------------------ SWISS-PROT Protein Sequence Data Bank. Release 36.0, July 1998 ------------------------------------------------------------------------------ Yeast Chromosome VI entries ------------------------------------------------------------------------------ Amos Bairoch Email: bairoch@medecine.unige.ch Swiss Institute of Bioinformatics and University of Geneva Switzerland ------------------------------------------------------------------------------ Document name: YEAST6.TXT ------------------------------------------------------------------------------ ======================================= Yeast chromosome VI open reading frames ======================================= The complete DNA sequence of chromosome VI of the yeast S.cerevisiae has been determined by the Division of Human Genome Research of the Institute of Physical amd Chemical Research (RIKEN) in Japan. See: Murakami Y., et al. Nature Genet. 10:261-268(1995). Size of CHRVI: 271 Kb Total number of ORFs currently in SWISS-PROT: 129 ===================== ORF code nomenclature ===================== YX[L|R]ddd[w|c] Y = Yeast X = Letter representing the chromosome (in this case X is 'F' for CHRVI) L | R = 'L' is for Left arm; 'R' is for Right arm ddd = ORF number on the left or right arm c | w = 'c' is for complementary strand; 'w' is for Watson strand ================== Categories of ORFs ================== 1: genetically and biochemically characterized 2: genetically characterized, but exact function not known 3: high similarity to a protein of characterized function 4: high similarity to a protein of uncharacterized function 5: low similarity to an existing protein 6: no known similarity (temporary assignment) 7: probable non-expressed ORF ---------- ---------- ------ ---- ------------------- --------------- ---- ORF SWISS-PROT S-PROT Size Gene name and ORF code Cat. code entry name AC a.a. synonyms synonyms ---------- ---------- ------ ---- ------------------- --------------- ---- YFL068w YFG8_YEAST P43536 160 6 YFL067w YFG7_YEAST P43537 175 6 YFL066c YFG6_YEAST P43538 392 3 YFL065c YFG5_YEAST P43539 102 4 YFL064c YFG4_YEAST P43540 174 4 YFL063w YFG3_YEAST P43541 151 4 YFL062w YFG2_YEAST P43542 379 4 YFL061w YFG1_YEAST P43543 225 3 YFL060c YFG0_YEAST P43544 222 4 YFL059w YFF9_YEAST P43545 298 4 YFL058w THI5_YEAST P43534 340 THI5 2 YFL057c YFF7_YEAST P43546 152 3 YFL056c YFF6_YEAST P43547 212 3 YFL055w AGP3_YEAST P43548 558 AGP3 1 YFL054c YFF4_YEAST P43549 646 3 YFL053w DHAK_YEAST P43550 591 DAK2 1 YFL052w YFF2_YEAST P43551 465 3 YFL051c YFF1_YEAST P43552 160 4 YFL050c ALR2_YEAST P43553 858 ALR2 2 YFL049w YFE9_YEAST P43554 623 3 YFL048c EM47_YEAST P43555 445 EMP47 2 YFL047w YFE7_YEAST P43556 714 6 YFL046w YFE6_YEAST P43557 207 4 YFL045c PMM_YEAST P07283 254 SEC53; ALG4 1 YFL044c YFE4_YEAST P43558 301 6 YFL043c YFE3_YEAST P43559 145 6 YFL042c YFE2_YEAST P43560 555 4 YFL041w YFE1_YEAST P43561 622 3 YFL040w YFE0_YEAST P43562 540 3 YFL039c ACT_YEAST P02579 375 ACT1; ABY1; END7 1 YFL038c YPT1_YEAST P01123 206 YPT1; YP2 1 YFL037w TBB_YEAST P02557 457 TUB2 1 YFL036w RPOM_YEAST P13433 1351 RPO41 1 YFL035c MOB2_YEAST P43563 259 MOB2 2 YFL034w YFD4_YEAST P43564 1073 6 YFL033c RI15_YEAST P43565 1770 RIM15 1 YFL032w YFD2_YEAST P43566 106 6 YFL031w HAC1_YEAST P41546 230 HAC1; IRE2; ERN4 1 YFL030w YFD0_YEAST P43567 385 3 YFL029c CAK1_YEAST P43568 368 CAK1; CIV1 1 YFL028c YFC8_YEAST P43569 289 3 YFL027c YFC7_YEAST P43570 497 6 YFL026w STE2_YEAST P06842 431 STE2 1 YFL025c YFC5_YEAST P43571 1029 6 YFL024c YFC4_YEAST P43572 832 6 YFL023w YFC3_YEAST P43573 796 6 YFL022c SYFB_YEAST P15625 503 FRS2 1 YFL021w GAT1_YEAST P43574 510 GAT1 1 YFL020c PAU5_YEAST P43575 122 PAU5 2 YFL019c YFB9_YEAST P43576 117 6 YFL018c DLDH_YEAST P09624 499 LPD1; DHLP1 1 YFL017Bw SNP2_YEAST P40204 77 SNP2; SMX2 1 YFL017c YFB7_YEAST P43577 159 5 YFL016c MDJ1_YEAST P35191 511 MDJ1 1 YFL015c YFB5_YEAST P43578 164 6 YFL014w HS12_YEAST P22943 109 HSP12; GLP1 2 YFL013c YFB3_YEAST P43579 692 6 YFL012w YFB2_YEAST P43580 148 6 YFL011w HXT0_YEAST P43581 546 HXT10 1 YFL010Bw AUA1_YEAST P32450 94 AUA1 2 YFL010c YFB0_YEAST P43582 211 6 YFL009w CC4_YEAST P07834 779 CDC4 2 YFL008w SMC1_YEAST P32908 1225 SMC1; CHL10 2 YFL007w YFA7_YEAST P43583 1804 6 YFL006w YFA6_YEAST P43584 254 6 YFL005w SEC4_YEAST P07560 215 SEC4 1 YFL004w YFA4_YEAST P43585 828 4 YFL003c MSH4_YEAST P40965 878 MSH4 1 YFL002c SPB4_YEAST P25808 606 SPB4 2 YFL001W DEG1_YEAST P31115 442 DEG1 2 YFR001w YFH1_YEAST P43586 204 6 YFR002w NI96_YEAST P34077 839 NIC96 2 YFR003c YFH3_YEAST P43587 155 6 YFR004w MPR1_YEAST P43588 306 MPR1 2 YFR005c YFH5_YEAST P43589 448 6 YFR006w YFH6_YEAST P43590 535 3 YFR007w YFH7_YEAST P43591 353 6 YFR008w YFH8_YEAST P43592 221 6 YFR009w GC20_YEAST P43535 752 GCN20 1 YFR010w UBPH_YEAST P43593 499 3 YFR011c YFI1_YEAST P43594 170 6 YFR012w YFI2_YEAST P43595 202 6 YFR013w YFI3_YEAST P43596 787 6 YFR014c KCC1_YEAST P27466 446 CMK1 1 YFR015c UGS1_YEAST P23337 708 GSY1 1 YFR016c YFI6_YEAST P43597 1233 5 YFR017c YFI7_YEAST P43598 195 6 YFR018c YFI8_YEAST P43599 363 3 YFR019w FAB1_YEAST P34756 2278 FAB1 2 YFR020w YFJ0_YEAST P43600 232 6 YFR021w YFJ1_YEAST P43601 500 4 YFR022w YFJ2_YEAST P43602 733 4 YFR023w PES4_YEAST P39684 611 PES4 2 YFR024c YFJ4_YEAST P43603 373 4 YFR025c HIS9_YEAST P38635 335 HIS2 1 YFR026c YFJ6_YEAST P43604 169 6 YFR027w YFJ7_YEAST P43605 281 6 YFR028c CC14_YEAST Q00684 551 CDC14 1 YFR029w PTR3_YEAST P43606 678 PTR3; SSY3 2 YFR030w MT10_YEAST P39692 1035 MET10 1 YFR031c SMC2_YEAST P38989 1170 SMC2 2 YFR031Bc RL6_YEAST P05736 254 RPL5B 1 YFR032c YFK2_YEAST P43607 289 6 YFR032Bw RL43_YEAST P05747 59 YL43 1 YFR033c UCRH_YEAST P00127 147 QCR6; UCR6 1 YFR034c PHO4_YEAST P07270 312 PHO4 1 YFR035c YFK5_YEAST P43608 114 6 YFR036w CC26_YEAST P14724 124 CDC26; SCD26; HIT3 1 YFR037c YFK7_YEAST P43609 557 3 YFR038w YFK8_YEAST P43610 778 3 YFR039c YFK9_YEAST P43611 510 4 YFR040w SAP1_YEAST P43612 1000 SAP155 1 YFR041c YFL1_YEAST P43613 295 3 YFR042w YFL2_YEAST P43614 200 6 YFR043c YFL3_YEAST P43615 237 6 YFR044c YFL4_YEAST P43616 481 4 YFR045w YFL5_YEAST P43617 178 3 YFR046c YFL6_YEAST P43618 361 6 YFR047c NADC_YEAST P43619 295 3 YFR048w YFL8_YEAST P43620 662 5 YFR049w RT31_YEAST P19955 123 YMR31 1 YFR050c PRCH_YEAST P30657 266 PRE4 1 YFR051c COPD_YEAST P43621 546 RET2 1 YFR052w NIN1_YEAST P32496 274 NIN1 2 YFR053c HXKA_YEAST P04806 485 HXK1; HKA 1 YFR054c YFM4_YEAST P43622 192 6 YFR055w METC_YEAST P43623 340 3 YFR056c YFM6_YEAST P43624 122 6 YFR057w YFM7_YEAST P43625 151 6