ID NC006583_1; SV 1; special; RNA; MAM; 333 BP. XX AC NC006583_1; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_1; NC006583_1. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..333 FT /organism="Canis familiaris" FT CDS 1..333 FT /protein_id="NC006583_1" FT /db_xref="trGEN:NC006583_1" FT /translation="XVSFPRLHQRLLPEASEMQVNNADLDGISRVSFARLHQR FT RLPEASETQGNNADLEGIPRVSFEGLHQRRLPEASKTQVNNADLYGISRCSRV FT SLQSEIRRSSPETFARGF" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '+' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..89 FT /number=1 FT /note="INTERNAL EXON; p-value: 0.759." FT exon 90..176 FT /number=2 FT /note="INTERNAL EXON; p-value: 0.663." FT exon 177..276 FT /number=3 FT /note="INTERNAL EXON; p-value: 0.774." FT exon 277..333 FT /number=4 FT /note="LAST EXON; p-value: 0.654." FT CONTIG join(NC_006583:3003782...3003868, 3006730...3006816, FT 3007468...3007567, 3008193...3008249) XX SQ Sequence 333 BP; 83 A; 81 C; 91 G; 76 T; 2 other; nnagtgagtt tcccacgtct tcaccagaga cttttgccag aggcctctga gatgcaagtt 60 aacaatgcag acctggacgg tatctccaga gtgagtttcg cacgtcttca ccagagacgt 120 ttgccagagg cttctgagac gcagggtaac aatgcagacc tggagggtat ccccagagtg 180 agtttcgaag gtcttcacca gagacgtttg ccagaggcct ctaagacgca agttaacaat 240 gcagacctgt acggtatctc caggtgcagt agagtgtccc tgcagagtga gattcgaagg 300 tcttcaccag agacgtttgc cagaggcttc tga 333 // ID NC006583_2; SV 1; special; RNA; MAM; 531 BP. XX AC NC006583_2; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_2; NC006583_2. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..531 FT /organism="Canis familiaris" FT CDS 1..531 FT /protein_id="NC006583_2" FT /db_xref="trGEN:NC006583_2" FT /translation="MEDLIRHAKITIKDSRAKIEQIVASCHSCQLTNATAHGS FT NPGTWLRGDRSGAYWEVDFTEVKPGKYGYRYLLVFVDNFSGCTEAFPTKHETA FT QTVTKKLLEDILPRYGFPVKIGSDKGPGFFSKGHTDSPTGPLCPRHTGTGMRG FT GEEVPRNPASPGPQDRGSTDLLGRFAQTLVT" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '-' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..372 FT /number=1 FT /note="FIRST EXON; p-value: 0.880." FT exon 373..531 FT /number=2 FT /note="LAST EXON; p-value: 0.308." FT CONTIG join(NC_006583:3018103...3017732, FT 3016063...3015905) XX SQ Sequence 531 BP; 145 A; 143 C; 145 G; 98 T; other; atggaagacc tcatacgaca tgcaaagatc actattaaag actctcgagc aaagatcgag 60 cagatcgtgg caagctgcca ctcatgccag ttaactaatg ccaccgccca tggatctaac 120 ccaggcacct ggctccgggg ggaccgctca ggagcctact gggaagtgga cttcactgag 180 gtaaaacctg gaaaatatgg atacaggtat ttattagtgt ttgtagataa tttttcagga 240 tgcacagagg catttcccac caaacatgaa acggcacaga ccgtgaccaa gaaactgctg 300 gaagacatct taccaaggta tggttttcct gttaagattg ggtcagacaa gggcccagga 360 ttcttctcta agggccacac tgacagcccc acaggccctc tgtgcccgag gcacacaggc 420 acggggatgc ggggagggga ggaagtgccc cggaacccgg ccagcccggg cccccaggac 480 agagggagca cagacctcct aggtcgcttt gcacagaccc tggtgacctg a 531 // ID NC006583_3; SV 1; special; RNA; MAM; 855 BP. XX AC NC006583_3; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_3; NC006583_3. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..855 FT /organism="Canis familiaris" FT CDS 1..855 FT /protein_id="NC006583_3" FT /db_xref="trGEN:NC006583_3" FT /translation="MREGPILNSALKRKHASKPKVRRFNEYRTTAPGDTTIKD FT FNLPLASHELLAYISTHNSPEGKERLRVHRQTLMAGLQAATCKTTNLAKVYDV FT RQGKDESPAAFLQGAIEAFRQYTPMNPEAPETKAAIIMAFVSQAVLNIKKKLQ FT RVERPGEKSLQDLVTIAERVYNRKSPEELHVTTPHAIKGVLKQPPDSWISNAH FT LTHYQSLLLNPTRILFKPPTTLNLATLLPNPDWDPPLHDCQEILAQVYGIRAD FT LQDQPLPNANATWYTDDSSFVREGVRFAGAAIP" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '-' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..163 FT /number=1 FT /note="FIRST EXON; p-value: 0.296." FT exon 164..855 FT /number=2 FT /note="LAST EXON; p-value: 0.994." FT CONTIG join(NC_006583:3021540...3021378, FT 3019387...3018696) XX SQ Sequence 855 BP; 254 A; 235 C; 201 G; 165 T; other; atgcgggagg gtcctatctt gaattcagct ctcaaaagga agcatgcctc gaagccgaaa 60 gtcaggaggt tcaatgaata ccgcactact gcacctggag acacaaccat taaagacttc 120 aacttgcccc ttgcgtccca tgagcttctg gcatacatct ctacacacaa ctcgcctgaa 180 ggtaaggagc gactccgggt ccaccgccag actctaatgg caggtctcca ggctgccacg 240 tgcaagacta ccaatctggc caaggtctat gatgtgagac agggtaagga tgagagtcca 300 gcagccttct tacagggagc aatagaggct tttaggcagt acacccctat gaacccagaa 360 gccccggaaa caaaggccgc aattatcatg gcttttgtta gccaggccgt tctgaacatt 420 aaaaagaaat tgcaaagagt agagagaccg ggagagaaga gcttgcagga cttagtgaca 480 atagcagaac gagtctataa tagaaaaagt ccggaagaac tgcatgttac caccccacac 540 gctattaaag gggtactcaa acagccccca gacagctgga tcagcaatgc ccatctgacc 600 cattatcaga gcctactgct aaaccccacc agaattttat ttaagccacc gacaaccctg 660 aatctggcaa cgctactccc taacccagac tgggaccccc ctctgcatga ctgtcaagaa 720 attttggcac aggtgtacgg aatcagagct gatctccagg accagccact gccgaacgcc 780 aatgccacct ggtacacgga cgacagcagt tttgtccgag aaggagtccg atttgcgggg 840 gcagccatac cataa 855 // ID NC006583_4; SV 1; special; RNA; MAM; 837 BP. XX AC NC006583_4; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_4; NC006583_4. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..837 FT /organism="Canis familiaris" FT CDS 1..837 FT /protein_id="NC006583_4" FT /db_xref="trGEN:NC006583_4" FT /translation="MLSPSARGPSVPTRIPPISAESQGAAQRHPLEARGADAH FT PASDPADVHLRISAKAHPQTPHRPLAATKLSDHRGCRASALPGKLQLRPVSFG FT NVSLKWSPTPGQSHQVRVRTRQGPESPGPRFRSIRDASFVRGKCLLAQSSDFG FT GIPPSEGSYILTSKPEYLVESCHSGELPSASSTLPAHGVTNILTRQVCQKLMG FT RKGQAAGFNGCVSRVSFERLHQRRLSEDSETQVEQCRPGRCPQEMKEEALVSS FT RDITQIGLDVNRTFGSHTMFWDRYGVG" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '+' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..248 FT /number=1 FT /note="FIRST EXON; p-value: 0.011." FT exon 249..364 FT /number=2 FT /note="INTERNAL EXON; p-value: 0.014." FT exon 365..527 FT /number=3 FT /note="INTERNAL EXON; p-value: 0.443." FT exon 528..635 FT /number=4 FT /note="INTERNAL EXON; p-value: 0.287." FT exon 636..723 FT /number=5 FT /note="INTERNAL EXON; p-value: 0.436." FT exon 724..837 FT /number=6 FT /note="LAST EXON; p-value: 0.862." FT CONTIG join(NC_006583:3034862...3035109, 3038752...3038867, FT 3040592...3040754, 3040781...3040888, 3041537...3041624, FT 3044818...3044931) XX SQ Sequence 837 BP; 200 A; 256 C; 231 G; 150 T; other; atgctcagcc ccagcgccag aggacccagc gtccccactc gcatcccgcc catcagcgcc 60 gagtctcagg gagcagcaca gcgccacccg ctggaggcca gaggcgctga cgcccacccc 120 gcctctgacc ccgcagatgt gcacctgaga atcagcgcca aggctcatcc ccagaccccg 180 cacagaccac tcgctgccac caagttgtcg gaccacagag gctgcagagc ttcagctctg 240 cctggaaagc tccagctgag gcctgtgagc ttcggaaacg tctcactgaa atggagccca 300 acacccggac agagtcacca ggtccgggtg aggaccaggc aaggaccaga atcaccaggt 360 ccaagatttc gttcgatacg ggatgcaagt tttgtgagag gcaagtgtct cttagctcaa 420 tccagcgact tcggaggaat tcctccctca gaagggagct acatactaac ttccaaacct 480 gagtacctag ttgaaagctg tcactctggg gaacttcctt ctgcgagttc cacactgcct 540 gcacatggag ttaccaacat cctcactaga caggtttgtc agaagctcat gggacgcaag 600 gggcaagctg caggcttcaa tggttgcgtc tccagagtga gtttcgaacg tcttcaccag 660 agacgtttgt cagaggattc tgagacgcaa gtggaacaat gccgacctgg aaggtgtccc 720 caggaaatga aggaggaggc cctggtctcc tccagggaca tcacgcagat aggcctggac 780 gtcaacagga cgttcggcag ccacaccatg ttttgggacc gctacggggt cgggtga 837 // ID NC006583_5; SV 1; special; RNA; MAM; 2196 BP. XX AC NC006583_5; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_5; NC006583_5. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..2196 FT /organism="Canis familiaris" FT CDS 1..2196 FT /protein_id="NC006583_5" FT /db_xref="trGEN:NC006583_5" FT /translation="MGHKSALNRYNRYKKVGITPCTFSDHEAMKHEVDSGTAG FT WCSRPGNSVEARQNEGNHRSYNERRPLPLGRDYPLCKTASGPSSASGAIKNSS FT QQLATAPHRGPTAMVGTLAIPSLPGEERRFRQDTLPSWPQGSLPRMAAGNEGG FT GLISSRDITQIDLDINSCSAAKSCFGTARGCISQADVRCEMALTISAMGHPQT FT PHRPLAATKLSDHRGCRSSAPPGKPNTKTNGIQPPMALASPGFWPRDERAFSQ FT LDVASWALGVHPQIQVADLGQTGGSRYTPGTDHIMAHKSALNRYNRYKKVDIT FT PCTFLYHDAMKLEVDKILKDKELEPTGREMKCGPDFYHVLQNSLNPLPLWAGP FT RVGAAALETVWRPLRKLQIEPPCNQQVNGLELTLKIQMQCISQADVHLTISAT FT SHRQTPHRPLAATKLSDHRGPERRPGDTFASRKTCAPIEQNPLKRSLQKFCMK FT HASKPKVRRFNEYRSTAPGDTTIEAFDLPPASHELLAYISTHNSPEGKKRLRV FT HRQTLMAGLQAAACKTTNLAKVYDVRQGKDESPAAFLEGAIEAFRQYTPMNPE FT APETKAAIIMAFVNQAALNIKKKLQRVEGLGEKSLQDLVIIAERVYNRKSLEE FT LHVTTPHTIKGVFKQPPDSWISNAHLTHYQSLLLNPTRILFKPPTLNLATLLP FT NPDWDPPLHDCQEILAQVYGIRADLQDQPLSNADATWYTDGSSFVREGVRFAG FT AAI" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '-' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..103 FT /number=1 FT /note="FIRST EXON; p-value: 0.528." FT exon 104..156 FT /number=2 FT /note="INTERNAL EXON; p-value: 0.333." FT exon 157..279 FT /number=3 FT /note="INTERNAL EXON; p-value: 0.377." FT exon 280..421 FT /number=4 FT /note="INTERNAL EXON; p-value: 0.337." FT exon 422..524 FT /number=5 FT /note="INTERNAL EXON; p-value: 0.004." FT exon 525..665 FT /number=6 FT /note="INTERNAL EXON; p-value: 0.010." FT exon 666..842 FT /number=7 FT /note="INTERNAL EXON; p-value: 0.116." FT exon 843..958 FT /number=8 FT /note="INTERNAL EXON; p-value: 0.025." FT exon 959..1187 FT /number=9 FT /note="INTERNAL EXON; p-value: 0.060." FT exon 1188..1385 FT /number=10 FT /note="INTERNAL EXON; p-value: 0.030." FT exon 1386..1510 FT /number=11 FT /note="INTERNAL EXON; p-value: 0.051." FT exon 1511..2196 FT /number=12 FT /note="LAST EXON; p-value: 0.991." FT CONTIG join(NC_006583:3090814...3090712, 3087429...3087377, FT 3080500...3080378, 3078648...3078507, 3078448...3078346, FT 3071222...3071082, 3066242...3066066, 3062407...3062292, FT 3056785...3056557, 3054640...3054443, 3052385...3052261, FT 3050359...3049674) XX SQ Sequence 2196 BP; 605 A; 634 C; 565 G; 392 T; other; atgggccaca aatcagccct caacaggtac aacaggtaca agaaggttgg tatcacacca 60 tgtacatttt cagaccacga ggctatgaaa cacgaagtcg acagcgggac cgcgggctgg 120 tgcagccgcc ctggaaacag tgtggaggct cgtcagaacg aggggaacca caggtcttac 180 aatgaaagac gcccacttcc actcgggcga gactatccct tgtgtaagac ggcatctggg 240 ccaagtagtg caagcggggc aatcaagaat agttcgcagc agctcgccac ggcccctcac 300 agaggtccca cggccatggt gggcactctg gccatcccca gcctcccagg agaagaaagg 360 aggtttcggc aggacacact cccatcgtgg ccccagggct ccctgcctag gatggcagct 420 ggaaatgaag gaggaggcct catctcctcc agggacatca cgcagataga cctggacatc 480 aacagttgtt cggcagccaa atcatgtttt gggactgcta gagggtgcat ctcccaggca 540 gatgtgagat gtgagatggc gctgacaatc agcgccatgg gccatcccca gaccccgcac 600 agaccactcg ctgccaccaa gttgtcagac cacagaggat gcagatcctc agcgccgcct 660 ggaaagccca acacaaagac taatgggatc cagcccccga tggccctggc cagccctgga 720 ttctggcccc gggatgagcg agccttctca cagttggatg tggcctcctg ggcactgggc 780 gtgcacccac agatccaggt cgctgaccta gggcagaccg ggggatcccg gtacacccca 840 ggaacagatc atatcatggc ccataaatca gccctcaaca ggtacaacag gtacaagaag 900 gttgatatca caccctgtac atttttgtac cacgacgcta tgaaacttga agtcgacaaa 960 atacttaagg acaaggaatt ggagcccaca ggacgtgaaa tgaaatgtgg accagacttt 1020 taccacgtcc tgcaaaactc actcaaccct cttccactgt gggcgggacc gcgggttggt 1080 gcagccgccc tggaaacagt gtggaggccc ctcaggaagt tacaaataga gccgccctgc 1140 aaccagcagg tgaacggcct ggagctcact ctgaagatac agatgcagtg catctcccag 1200 gcagatgtgc acctgacaat cagcgccaca tcccatcgcc agacaccaca cagaccactc 1260 gctgccacca agttgtcaga ccacagaggc ccggagagga ggcccggaga cacatttgcc 1320 tctcgcaaaa cttgcgcccc tatcgaacaa aatcctttga agcgaagctt acagaagttc 1380 tgcatgaagc atgcctcgaa gccgaaagtc aggaggttca atgaataccg ctctactgca 1440 cctggagaca caaccattga agccttcgac ttgccccctg cgtcccatga gcttctggca 1500 tacatctcta cacacaactc gcctgaaggt aagaagagac tccgggtcca ccgccagact 1560 ctaatggcag gtctccaggc tgccgcgtgc aagacgacca atctggccaa ggtctatgat 1620 gtgagacagg gtaaggatga gagtccagca gccttcttag agggagcaat agaggctttt 1680 aggcagtaca cccctatgaa cccagaagcc ccggaaacaa aggccgcaat tatcatggct 1740 tttgttaacc aggccgctct gaacattaaa aagaaattgc aaagagtaga gggactggga 1800 gagaagagct tgcaggactt agtgataata gcagaacgag tctataatag aaaaagtctg 1860 gaagaactgc atgttaccac cccacacact attaaagggg tattcaaaca gcccccagac 1920 agctggatca gcaatgccca tctgacccat tatcagagcc tactgctaaa ccccaccaga 1980 attttattta agccaccgac attgaatctg gcaacgctac tccctaaccc agactgggac 2040 ccccctctgc acgactgtca agaaattttg gcacaggtgt acggaatcag agctgatctc 2100 caggaccagc cactgtcgaa cgccgatgcc acctggtaca cggacggcag cagttttgtc 2160 cgagaaggag tccgatttgc gggggcagcc atataa 2196 // ID NC006583_6; SV 1; special; RNA; MAM; 333 BP. XX AC NC006583_6; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_6; NC006583_6. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..333 FT /organism="Canis familiaris" FT CDS 1..333 FT /protein_id="NC006583_6" FT /db_xref="trGEN:NC006583_6" FT /translation="XVSFPRLHQRLLPEASEMQVNNADLDGISRVSFARLHQR FT RLPEASETQGNNADLEGIPRVSFEGLHQRRLPEASKTQVNNADLYGISRCSRV FT SLQSEIRRSSPETFARGF" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '+' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..89 FT /number=1 FT /note="INTERNAL EXON; p-value: 0.759." FT exon 90..176 FT /number=2 FT /note="INTERNAL EXON; p-value: 0.663." FT exon 177..276 FT /number=3 FT /note="INTERNAL EXON; p-value: 0.774." FT exon 277..333 FT /number=4 FT /note="LAST EXON; p-value: 0.654." FT CONTIG join(NC_006583:3003782...3003868, 3006730...3006816, FT 3007468...3007567, 3008193...3008249) XX SQ Sequence 333 BP; 83 A; 81 C; 91 G; 76 T; 2 other; nnagtgagtt tcccacgtct tcaccagaga cttttgccag aggcctctga gatgcaagtt 60 aacaatgcag acctggacgg tatctccaga gtgagtttcg cacgtcttca ccagagacgt 120 ttgccagagg cttctgagac gcagggtaac aatgcagacc tggagggtat ccccagagtg 180 agtttcgaag gtcttcacca gagacgtttg ccagaggcct ctaagacgca agttaacaat 240 gcagacctgt acggtatctc caggtgcagt agagtgtccc tgcagagtga gattcgaagg 300 tcttcaccag agacgtttgc cagaggcttc tga 333 // ID NC006583_7; SV 1; special; RNA; MAM; 531 BP. XX AC NC006583_7; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_7; NC006583_7. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..531 FT /organism="Canis familiaris" FT CDS 1..531 FT /protein_id="NC006583_7" FT /db_xref="trGEN:NC006583_7" FT /translation="MEDLIRHAKITIKDSRAKIEQIVASCHSCQLTNATAHGS FT NPGTWLRGDRSGAYWEVDFTEVKPGKYGYRYLLVFVDNFSGCTEAFPTKHETA FT QTVTKKLLEDILPRYGFPVKIGSDKGPGFFSKGHTDSPTGPLCPRHTGTGMRG FT GEEVPRNPASPGPQDRGSTDLLGRFAQTLVT" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '-' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..372 FT /number=1 FT /note="FIRST EXON; p-value: 0.880." FT exon 373..531 FT /number=2 FT /note="LAST EXON; p-value: 0.308." FT CONTIG join(NC_006583:3018103...3017732, FT 3016063...3015905) XX SQ Sequence 531 BP; 145 A; 143 C; 145 G; 98 T; other; atggaagacc tcatacgaca tgcaaagatc actattaaag actctcgagc aaagatcgag 60 cagatcgtgg caagctgcca ctcatgccag ttaactaatg ccaccgccca tggatctaac 120 ccaggcacct ggctccgggg ggaccgctca ggagcctact gggaagtgga cttcactgag 180 gtaaaacctg gaaaatatgg atacaggtat ttattagtgt ttgtagataa tttttcagga 240 tgcacagagg catttcccac caaacatgaa acggcacaga ccgtgaccaa gaaactgctg 300 gaagacatct taccaaggta tggttttcct gttaagattg ggtcagacaa gggcccagga 360 ttcttctcta agggccacac tgacagcccc acaggccctc tgtgcccgag gcacacaggc 420 acggggatgc ggggagggga ggaagtgccc cggaacccgg ccagcccggg cccccaggac 480 agagggagca cagacctcct aggtcgcttt gcacagaccc tggtgacctg a 531 // ID NC006583_8; SV 1; special; RNA; MAM; 855 BP. XX AC NC006583_8; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_8; NC006583_8. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..855 FT /organism="Canis familiaris" FT CDS 1..855 FT /protein_id="NC006583_8" FT /db_xref="trGEN:NC006583_8" FT /translation="MREGPILNSALKRKHASKPKVRRFNEYRTTAPGDTTIKD FT FNLPLASHELLAYISTHNSPEGKERLRVHRQTLMAGLQAATCKTTNLAKVYDV FT RQGKDESPAAFLQGAIEAFRQYTPMNPEAPETKAAIIMAFVSQAVLNIKKKLQ FT RVERPGEKSLQDLVTIAERVYNRKSPEELHVTTPHAIKGVLKQPPDSWISNAH FT LTHYQSLLLNPTRILFKPPTTLNLATLLPNPDWDPPLHDCQEILAQVYGIRAD FT LQDQPLPNANATWYTDDSSFVREGVRFAGAAIP" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '-' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..163 FT /number=1 FT /note="FIRST EXON; p-value: 0.296." FT exon 164..855 FT /number=2 FT /note="LAST EXON; p-value: 0.994." FT CONTIG join(NC_006583:3021540...3021378, FT 3019387...3018696) XX SQ Sequence 855 BP; 254 A; 235 C; 201 G; 165 T; other; atgcgggagg gtcctatctt gaattcagct ctcaaaagga agcatgcctc gaagccgaaa 60 gtcaggaggt tcaatgaata ccgcactact gcacctggag acacaaccat taaagacttc 120 aacttgcccc ttgcgtccca tgagcttctg gcatacatct ctacacacaa ctcgcctgaa 180 ggtaaggagc gactccgggt ccaccgccag actctaatgg caggtctcca ggctgccacg 240 tgcaagacta ccaatctggc caaggtctat gatgtgagac agggtaagga tgagagtcca 300 gcagccttct tacagggagc aatagaggct tttaggcagt acacccctat gaacccagaa 360 gccccggaaa caaaggccgc aattatcatg gcttttgtta gccaggccgt tctgaacatt 420 aaaaagaaat tgcaaagagt agagagaccg ggagagaaga gcttgcagga cttagtgaca 480 atagcagaac gagtctataa tagaaaaagt ccggaagaac tgcatgttac caccccacac 540 gctattaaag gggtactcaa acagccccca gacagctgga tcagcaatgc ccatctgacc 600 cattatcaga gcctactgct aaaccccacc agaattttat ttaagccacc gacaaccctg 660 aatctggcaa cgctactccc taacccagac tgggaccccc ctctgcatga ctgtcaagaa 720 attttggcac aggtgtacgg aatcagagct gatctccagg accagccact gccgaacgcc 780 aatgccacct ggtacacgga cgacagcagt tttgtccgag aaggagtccg atttgcgggg 840 gcagccatac cataa 855 // ID NC006583_9; SV 1; special; RNA; MAM; 837 BP. XX AC NC006583_9; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_9; NC006583_9. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..837 FT /organism="Canis familiaris" FT CDS 1..837 FT /protein_id="NC006583_9" FT /db_xref="trGEN:NC006583_9" FT /translation="MLSPSARGPSVPTRIPPISAESQGAAQRHPLEARGADAH FT PASDPADVHLRISAKAHPQTPHRPLAATKLSDHRGCRASALPGKLQLRPVSFG FT NVSLKWSPTPGQSHQVRVRTRQGPESPGPRFRSIRDASFVRGKCLLAQSSDFG FT GIPPSEGSYILTSKPEYLVESCHSGELPSASSTLPAHGVTNILTRQVCQKLMG FT RKGQAAGFNGCVSRVSFERLHQRRLSEDSETQVEQCRPGRCPQEMKEEALVSS FT RDITQIGLDVNRTFGSHTMFWDRYGVG" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '+' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..248 FT /number=1 FT /note="FIRST EXON; p-value: 0.011." FT exon 249..364 FT /number=2 FT /note="INTERNAL EXON; p-value: 0.014." FT exon 365..527 FT /number=3 FT /note="INTERNAL EXON; p-value: 0.443." FT exon 528..635 FT /number=4 FT /note="INTERNAL EXON; p-value: 0.287." FT exon 636..723 FT /number=5 FT /note="INTERNAL EXON; p-value: 0.436." FT exon 724..837 FT /number=6 FT /note="LAST EXON; p-value: 0.862." FT CONTIG join(NC_006583:3034862...3035109, 3038752...3038867, FT 3040592...3040754, 3040781...3040888, 3041537...3041624, FT 3044818...3044931) XX SQ Sequence 837 BP; 200 A; 256 C; 231 G; 150 T; other; atgctcagcc ccagcgccag aggacccagc gtccccactc gcatcccgcc catcagcgcc 60 gagtctcagg gagcagcaca gcgccacccg ctggaggcca gaggcgctga cgcccacccc 120 gcctctgacc ccgcagatgt gcacctgaga atcagcgcca aggctcatcc ccagaccccg 180 cacagaccac tcgctgccac caagttgtcg gaccacagag gctgcagagc ttcagctctg 240 cctggaaagc tccagctgag gcctgtgagc ttcggaaacg tctcactgaa atggagccca 300 acacccggac agagtcacca ggtccgggtg aggaccaggc aaggaccaga atcaccaggt 360 ccaagatttc gttcgatacg ggatgcaagt tttgtgagag gcaagtgtct cttagctcaa 420 tccagcgact tcggaggaat tcctccctca gaagggagct acatactaac ttccaaacct 480 gagtacctag ttgaaagctg tcactctggg gaacttcctt ctgcgagttc cacactgcct 540 gcacatggag ttaccaacat cctcactaga caggtttgtc agaagctcat gggacgcaag 600 gggcaagctg caggcttcaa tggttgcgtc tccagagtga gtttcgaacg tcttcaccag 660 agacgtttgt cagaggattc tgagacgcaa gtggaacaat gccgacctgg aaggtgtccc 720 caggaaatga aggaggaggc cctggtctcc tccagggaca tcacgcagat aggcctggac 780 gtcaacagga cgttcggcag ccacaccatg ttttgggacc gctacggggt cgggtga 837 // ID NC006583_10; SV 1; special; RNA; MAM; 2820 BP. XX AC NC006583_10; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_10; NC006583_10. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..2820 FT /organism="Canis familiaris" FT CDS 1..2820 FT /protein_id="NC006583_10" FT /db_xref="trGEN:NC006583_10" FT /translation="MRAGSLGPLALGLSILPPQSAWASTEELPSPRVSADSLR FT TLRLLYLSPSFFWFCFFISEKPTLMKTHEGLFTSSSLCPSIPNRLEQGLGPRD FT TVTSIVNRHVCQKLKGRKGQAAGFNIVSPGVVKRYSWNILNYNAATFSWPLEC FT NAVTNILTRHVCQKLIGRKGYLQASMVVSPDAVTNILTRHVCQKLMGRKGQLQ FT ASMVVSPDHIMGHKSALNRYNRYKKVGITPCTFSDHEAMKHEVDSGTAGWCSR FT PGNSVEARQNEGNHRSYNERRPLPLGRDYPLCKTASGPSSASGAIKNSSQQLA FT TAPHRGPTAMVGTLAIPSLPGEERRFRQDTLPSWPQGSLPRMAAGNEGGGLIS FT SRDITQIDLDINSCSAAKSCFGTARGCISQADVRCEMALTISAMGHPQTPHRP FT LAATKLSDHRGCRSSAPPGKPNTKTNGIQPPMALASPGFWPRDERAFSQLDVA FT SWALGVHPQIQVADLGQTGGSRYTPGTDHIMAHKSALNRYNRYKKVDITPCTF FT LYHDAMKLEVDKILKDKELEPTGREMKCGPDFYHVLQNSLNPLPLWAGPRVGA FT AALETVWRPLRKLQIEPPCNQQVNGLELTLKIQMQCISQADVHLTISATSHRQ FT TPHRPLAATKLSDHRGPERRPGDTFASRKTCAPIEQNPLKRSLQKFCMKHASK FT PKVRRFNEYRSTAPGDTTIEAFDLPPASHELLAYISTHNSPEGKKRLRVHRQT FT LMAGLQAAACKTTNLAKVYDVRQGKDESPAAFLEGAIEAFRQYTPMNPEAPET FT KAAIIMAFVNQAALNIKKKLQRVEGLGEKSLQDLVIIAERVYNRKSLEELHVT FT TPHTIKGVFKQPPDSWISNAHLTHYQSLLLNPTRILFKPPTLNLATLLPNPDW FT DPPLHDCQEILAQVYGIRADLQDQPLSNADATWYTDGSSFVREGVRFAGAAI" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '-' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..274 FT /number=1 FT /note="FIRST EXON; p-value: 0.825." FT exon 275..436 FT /number=2 FT /note="INTERNAL EXON; p-value: 0.460." FT exon 437..526 FT /number=3 FT /note="INTERNAL EXON; p-value: 0.364." FT exon 527..616 FT /number=4 FT /note="INTERNAL EXON; p-value: 0.424." FT exon 617..727 FT /number=5 FT /note="INTERNAL EXON; p-value: 0.001." FT exon 728..780 FT /number=6 FT /note="INTERNAL EXON; p-value: 0.323." FT exon 781..903 FT /number=7 FT /note="INTERNAL EXON; p-value: 0.377." FT exon 904..1045 FT /number=8 FT /note="INTERNAL EXON; p-value: 0.337." FT exon 1046..1148 FT /number=9 FT /note="INTERNAL EXON; p-value: 0.004." FT exon 1149..1289 FT /number=10 FT /note="INTERNAL EXON; p-value: 0.010." FT exon 1290..1466 FT /number=11 FT /note="INTERNAL EXON; p-value: 0.116." FT exon 1467..1582 FT /number=12 FT /note="INTERNAL EXON; p-value: 0.025." FT exon 1583..1811 FT /number=13 FT /note="INTERNAL EXON; p-value: 0.060." FT exon 1812..2009 FT /number=14 FT /note="INTERNAL EXON; p-value: 0.030." FT exon 2010..2134 FT /number=15 FT /note="INTERNAL EXON; p-value: 0.051." FT exon 2135..2820 FT /number=16 FT /note="LAST EXON; p-value: 0.991." FT CONTIG join(NC_006583:3173827...3173554, 3171222...3171061, FT 3170569...3170480, 3169696...3169607, 3090822...3090712, FT 3087429...3087377, 3080500...3080378, 3078648...3078507, FT 3078448...3078346, 3071222...3071082, 3066242...3066066, FT 3062407...3062292, 3056785...3056557, 3054640...3054443, FT 3052385...3052261, 3050359...3049674) XX SQ Sequence 2820 BP; 753 A; 795 C; 720 G; 552 T; other; atgcgggcgg ggtctctggg tcctctggct ctggggctga gcatccttcc cccccagtct 60 gcatgggctt ccacagaaga gctcccaagc ccccgggtct ccgccgattc tctcagaacc 120 ctgcgtttac tctacctgtc tccgagcttc ttttggtttt gtttttttat ctcagagaag 180 ccgacactga tgaaaacaca cgagggttta tttacaagct cgagcttgtg tccaagtata 240 cccaacagat tggagcaggg acttggacca cgagatacag ttacgagcat cgtcaataga 300 catgtttgtc agaagctcaa gggacgcaag gggcaagctg caggcttcaa cattgtgtct 360 ccaggtgtag taaagcggta ttcatggaac atcctgaatt acaatgctgc cacattctca 420 tggccattag aatgcaatgc agttacgaac atcctcacta gacatgtttg tcagaagctc 480 ataggacgca agggctacct gcaggcttca atggttgtgt ctccagatgc agttacgaac 540 atcctcacta gacatgtttg tcagaagctc atggggcgca agggccagct gcaggcttca 600 atggttgtgt ctccagatca tatcatgggc cacaaatcag ccctcaacag gtacaacagg 660 tacaagaagg ttggtatcac accatgtaca ttttcagacc acgaggctat gaaacacgaa 720 gtcgacagcg ggaccgcggg ctggtgcagc cgccctggaa acagtgtgga ggctcgtcag 780 aacgagggga accacaggtc ttacaatgaa agacgcccac ttccactcgg gcgagactat 840 cccttgtgta agacggcatc tgggccaagt agtgcaagcg gggcaatcaa gaatagttcg 900 cagcagctcg ccacggcccc tcacagaggt cccacggcca tggtgggcac tctggccatc 960 cccagcctcc caggagaaga aaggaggttt cggcaggaca cactcccatc gtggccccag 1020 ggctccctgc ctaggatggc agctggaaat gaaggaggag gcctcatctc ctccagggac 1080 atcacgcaga tagacctgga catcaacagt tgttcggcag ccaaatcatg ttttgggact 1140 gctagagggt gcatctccca ggcagatgtg agatgtgaga tggcgctgac aatcagcgcc 1200 atgggccatc cccagacccc gcacagacca ctcgctgcca ccaagttgtc agaccacaga 1260 ggatgcagat cctcagcgcc gcctggaaag cccaacacaa agactaatgg gatccagccc 1320 ccgatggccc tggccagccc tggattctgg ccccgggatg agcgagcctt ctcacagttg 1380 gatgtggcct cctgggcact gggcgtgcac ccacagatcc aggtcgctga cctagggcag 1440 accgggggat cccggtacac cccaggaaca gatcatatca tggcccataa atcagccctc 1500 aacaggtaca acaggtacaa gaaggttgat atcacaccct gtacattttt gtaccacgac 1560 gctatgaaac ttgaagtcga caaaatactt aaggacaagg aattggagcc cacaggacgt 1620 gaaatgaaat gtggaccaga cttttaccac gtcctgcaaa actcactcaa ccctcttcca 1680 ctgtgggcgg gaccgcgggt tggtgcagcc gccctggaaa cagtgtggag gcccctcagg 1740 aagttacaaa tagagccgcc ctgcaaccag caggtgaacg gcctggagct cactctgaag 1800 atacagatgc agtgcatctc ccaggcagat gtgcacctga caatcagcgc cacatcccat 1860 cgccagacac cacacagacc actcgctgcc accaagttgt cagaccacag aggcccggag 1920 aggaggcccg gagacacatt tgcctctcgc aaaacttgcg cccctatcga acaaaatcct 1980 ttgaagcgaa gcttacagaa gttctgcatg aagcatgcct cgaagccgaa agtcaggagg 2040 ttcaatgaat accgctctac tgcacctgga gacacaacca ttgaagcctt cgacttgccc 2100 cctgcgtccc atgagcttct ggcatacatc tctacacaca actcgcctga aggtaagaag 2160 agactccggg tccaccgcca gactctaatg gcaggtctcc aggctgccgc gtgcaagacg 2220 accaatctgg ccaaggtcta tgatgtgaga cagggtaagg atgagagtcc agcagccttc 2280 ttagagggag caatagaggc ttttaggcag tacaccccta tgaacccaga agccccggaa 2340 acaaaggccg caattatcat ggcttttgtt aaccaggccg ctctgaacat taaaaagaaa 2400 ttgcaaagag tagagggact gggagagaag agcttgcagg acttagtgat aatagcagaa 2460 cgagtctata atagaaaaag tctggaagaa ctgcatgtta ccaccccaca cactattaaa 2520 ggggtattca aacagccccc agacagctgg atcagcaatg cccatctgac ccattatcag 2580 agcctactgc taaaccccac cagaatttta tttaagccac cgacattgaa tctggcaacg 2640 ctactcccta acccagactg ggacccccct ctgcacgact gtcaagaaat tttggcacag 2700 gtgtacggaa tcagagctga tctccaggac cagccactgt cgaacgccga tgccacctgg 2760 tacacggacg gcagcagttt tgtccgagaa ggagtccgat ttgcgggggc agccatataa 2820 // ID NC006583_11; SV 1; special; RNA; MAM; 627 BP. XX AC NC006583_11; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_11; NC006583_11. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..627 FT /organism="Canis familiaris" FT CDS 1..627 FT /protein_id="NC006583_11" FT /db_xref="trGEN:NC006583_11" FT /translation="MKRENSPCSAVLGVLGRKLKFGNQPLCVCIGVSSLVVSR FT IRNLEHNIPMSPPTLAEPLSPPTQGDSHLPAYNSWAQAITQEMKEEALVSSRD FT ITLGDLDVNRMFSSHVMFCDYYGVGTDHIMGHKSAINRYNRYKKVDITHCTFS FT EHDAMKLEVDEYTFLSSAHGTFARKDHIMGHKSALNRYNRYKKVYITPCTFSD FT HDAIKLELDS" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '+' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..17 FT /number=1 FT /note="FIRST EXON; p-value: 0.252." FT exon 18..240 FT /number=2 FT /note="INTERNAL EXON; p-value: 0.406." FT exon 241..350 FT /number=3 FT /note="INTERNAL EXON; p-value: 0.531." FT exon 351..466 FT /number=4 FT /note="INTERNAL EXON; p-value: 0.149." FT exon 467..627 FT /number=5 FT /note="LAST EXON; p-value: 0.609." FT CONTIG join(NC_006583:3174674...3174690, 3177487...3177709, FT 3177876...3177985, 3182330...3182445, 3188104...3188264) XX SQ Sequence 627 BP; 175 A; 168 C; 142 G; 142 T; other; atgaagagag agaacagtcc ctgctccgct gtgttgggtg tacttggacg caagctcaag 60 tttggaaatc aacccttgtg tgtttgcatt ggtgtcagct ccttagtggt ttctcggatt 120 cgcaatcttg agcacaacat ccccatgtcc cctcccacct tggctgaacc tctatcccct 180 cccacccagg gtgatagtca cctccctgcc tacaacagct gggcacaggc catcacacag 240 gaaatgaagg aggaagccct ggtctcctct agggacatca cgctggggga cctggacgtc 300 aacaggatgt tcagcagtca cgtcatgttt tgtgactact atggggtagg aacagatcat 360 atcatgggcc acaaatcagc catcaacagg tacaacaggt acaagaaggt tgatatcaca 420 cactgtacat tttcggaaca cgatgctatg aaactcgaag tcgacgaata cacattcctt 480 tcaagtgcac atgggacatt cgccagaaag gatcatatca tgggccacaa atcagccctc 540 aacaggtaca acaggtacaa gaaggtttat atcacaccct gcacattttc ggaccacgac 600 gctataaaac tcgaactcga cagttag 627 // ID NC006583_12; SV 1; special; RNA; MAM; 711 BP. XX AC NC006583_12; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_12; NC006583_12. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..711 FT /organism="Canis familiaris" FT CDS 1..711 FT /protein_id="NC006583_12" FT /db_xref="trGEN:NC006583_12" FT /translation="MGSCTGSPQGSWTPASGSLGLQHLEEPASCIPKHDVTAE FT RHVDVQVHLLDVPGEDQGLLLHFLQEYQGGGASIRDSDPDMSPGAILGREPRG FT HHGTVSCRILLPSPGRLGMAGVPSMPMDLYEGLFPAVVGGETVVPKIGNLRNH FT LEADMNANTRGFIYKIKLVSKYTRHSRAGTWTPRTLNCKQQRFHTWKGDVTLS FT LYAEDAVLEAGNPRASTKTWTSSEVQEDVGLHPHCQEP" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '-' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..89 FT /number=1 FT /note="FIRST EXON; p-value: 0.454." FT exon 90..399 FT /number=2 FT /note="INTERNAL EXON; p-value: 0.259." FT exon 400..536 FT /number=3 FT /note="INTERNAL EXON; p-value: 0.786." FT exon 537..653 FT /number=4 FT /note="INTERNAL EXON; p-value: 0.481." FT exon 654..711 FT /number=5 FT /note="LAST EXON; p-value: 0.365." FT CONTIG join(NC_006583:3200372...3200284, 3198890...3198581, FT 3194942...3194806, 3194622...3194506, 3192712...3192655) XX SQ Sequence 711 BP; 167 A; 200 C; 210 G; 134 T; other; atgggctcct gcactgggtc cccacagggc agctggaccc cggcctcggg ctctctgggg 60 ctgcagcacc tggaggagcc tgcctcctgt atcccaaaac atgatgtgac tgctgaacgt 120 catgttgatg tccaggtcca cctgcttgat gtccctggag aagaccaggg cctcttactt 180 catttcctgc aggaatacca gggtggagga gccagcatca gggactcaga ccctgacatg 240 tcaccaggtg ccatcctggg cagggagccc aggggccacc atgggactgt gtcctgccga 300 atcctccttc cttcccctgg gaggctgggg atggcaggag tgcccagcat gcccatggac 360 ctgtatgagg gcctgttccc agctgttgtg ggcggggaga ctgttgtgcc caagattggg 420 aatctgagaa accacctaga agccgacatg aatgcaaaca cacgagggtt tatttacaag 480 atcaagctag tgtccaagta tacccgacac agcagagcag ggacttggac cccgaggaca 540 ttaaactgta aacagcaaag gttccacacc tggaaggggg acgtgacact gtccctatat 600 gctgaagatg cggtgctaga agcaggaaac ccgagagcct ccaccaaaac ctggaccagc 660 agtgaggttc aggaagatgt gggcctgcat ccacactgcc aggagccctg a 711 // ID NC006583_13; SV 1; special; RNA; MAM; 831 BP. XX AC NC006583_13; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_13; NC006583_13. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..831 FT /organism="Canis familiaris" FT CDS 1..831 FT /protein_id="NC006583_13" FT /db_xref="trGEN:NC006583_13" FT /translation="MAHKSTLNRYNRYKKVDITCCTFSEHDAMKLKVDITLNV FT NGLNDPIKRRRVSDWIKKQDPSICCLQETHFRQKDTYSLKIKALSTLDRSSKH FT NISKEMRALNDTLDQIDFTDIYKTLHPNSTEYTFFSSAHGTFSRIDHILDHKS FT RLNQYQKIGIVPCIFSDHNALKLELNHNKKFGRTSNTWRLRIILSKDERVNQE FT IKEELKRFMETIENEDTTVQNLWDAAKAVLRGKYITIQASIQQLERTQTQKLT FT LHLKELEKKQKIDPTPSRRRELIKI" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '+' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..103 FT /number=1 FT /note="FIRST EXON; p-value: 0.983." FT exon 104..244 FT /number=2 FT /note="INTERNAL EXON; p-value: 0.446." FT exon 245..831 FT /number=3 FT /note="LAST EXON; p-value: 0.792." FT CONTIG join(NC_006583:3203504...3203606, 3207401...3207541, FT 3207814...3208400) XX SQ Sequence 831 BP; 330 A; 178 C; 147 G; 176 T; other; atggcccaca aatcaaccct caacaggtac aacaggtaca agaaggttga tatcacatgc 60 tgtacatttt cagaacatga cgctatgaaa ctcaaagtcg acataactct gaatgtgaac 120 gggcttaatg accccatcaa aaggcgcagg gtttcagact ggataaaaaa gcaggaccca 180 tctatttgct gtctacaaga gactcatttt agacaaaagg acacctacag cctgaaaata 240 aaagcacttt ctacactcga taggtcttct aaacacaaca tctccaaaga aatgagagct 300 ttaaatgata cactggacca gatagatttc acagatatct acaaaacttt acatccaaac 360 tcaactgaat acacattctt ctcaagtgca catggaacct tctccagaat agaccacata 420 ctggatcaca aatcgcgtct gaatcaatac caaaagattg ggatcgtccc ctgcatattc 480 tcagaccata atgccttgaa attagaacta aatcacaaca agaagtttgg aaggacctca 540 aacacgtgga ggttaaggat catcctgtca aaagatgaaa gggtcaacca ggaaattaag 600 gaagaattaa aaagattcat ggaaactatt gagaatgaag atacaaccgt tcaaaatctt 660 tgggatgcag caaaagcagt cctgaggggg aaatacatca caatacaagc atccattcaa 720 caactggaaa gaactcaaac acaaaagcta accttacacc taaaggagct agagaaaaaa 780 cagaaaatag atcctacacc cagcagaaga agagagttaa taaagatttg a 831 // ID NC006583_14; SV 1; special; RNA; MAM; 969 BP. XX AC NC006583_14; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_14; NC006583_14. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..969 FT /organism="Canis familiaris" FT CDS 1..969 FT /protein_id="NC006583_14" FT /db_xref="trGEN:NC006583_14" FT /translation="MNYWDFIKIKSFCTAKETVNKTKRYPTEWEKIVANDLSD FT KGLVPKIYKELVKLKSKETNYPIMKWAKDMNRNLTKEDIDMANKYMRKCSASL FT AIREIQIKTTMRYHLTPVKAVVFRNKSDGHPDQDSSLEDLILPPPYPTPPRPP FT PHQRHRGLQKGHHPSLMREFLCTGWQQGHLLQVLFTTEERERIQVEARKSVLG FT EDRQLTQNPDLINTAFPLSHPTWDHNSAEEPLAARTSAQQAELIALAKALTMG FT EGKRINIYTDSRVQNSPHKMGLTPYEIMFGIPPPIIPNLKPEVLTEFDDHQLL FT FSLQMLQQTHEQRSRNRN" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '+' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..327 FT /number=1 FT /note="FIRST EXON; p-value: 0.616." FT exon 328..375 FT /number=2 FT /note="INTERNAL EXON; p-value: 0.607." FT exon 376..522 FT /number=3 FT /note="INTERNAL EXON; p-value: 0.510." FT exon 523..682 FT /number=4 FT /note="INTERNAL EXON; p-value: 0.669." FT exon 683..788 FT /number=5 FT /note="INTERNAL EXON; p-value: 0.604." FT exon 789..948 FT /number=6 FT /note="INTERNAL EXON; p-value: 0.868." FT exon 949..969 FT /number=7 FT /note="LAST EXON; p-value: 0.348." FT CONTIG join(NC_006583:3221282...3221608, 3235979...3236026, FT 3236164...3236310, 3236544...3236703, 3237451...3237556, FT 3238401...3238560, 3239594...3239614) XX SQ Sequence 969 BP; 320 A; 268 C; 198 G; 183 T; other; atgaactatt gggacttcat caagataaaa agcttctgca cagcaaaaga aacagtcaac 60 aaaactaaaa gatatcctac agaatgggag aagatagttg ctaatgacct atcagataaa 120 ggactagtac ccaagatcta taaagaactt gttaaactca agagtaaaga aacaaactat 180 ccaatcatga aatgggcaaa agacatgaac agaaatctca ccaaagaaga catagacatg 240 gccaataagt acatgagaaa atgttctgca tcacttgcca tcagggaaat acaaatcaaa 300 accacaatga gataccacct cacaccagtt aaggccgtgg tcttcaggaa taaatctgac 360 ggccaccctg accaggattc ctccctggag gacctgattc tcccaccgcc ctacccgacg 420 ccccctcgcc ctccccccca tcagaggcac cgggggctgc agaaggggca ccacccctcc 480 ctgatgaggg agttcctgtg cacaggctgg cagcagggac acctcttgca ggttctcttc 540 accaccgaag agagagaacg aattcaggtg gaagcccgga agtctgtcct gggagaggac 600 agacagctga ctcaaaaccc agacctcata aacactgcct tccccttatc ccaccccacc 660 tgggaccaca actcagctga agagccgttg gcagccagaa catcggctca acaggcagaa 720 ctgattgcac tggccaaggc gctgaccatg ggagaaggta aacgaataaa catctacacc 780 gacagcaggg tacaaaactc cccacataag atgggactta ccccctacga gatcatgttt 840 ggtattcctc cacctattat acccaattta aaacctgagg tgctcactga atttgatgat 900 caccagctcc ttttctccct ccaaatgtta caacaaactc atgaacagcg aagtcggaat 960 cgaaattga 969 // ID NC006583_15; SV 1; special; RNA; MAM; 1857 BP. XX AC NC006583_15; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_15; NC006583_15. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..1857 FT /organism="Canis familiaris" FT CDS 1..1857 FT /protein_id="NC006583_15" FT /db_xref="trGEN:NC006583_15" FT /translation="MERGGQAGLGSREGPAGNGPDPGCARAAAAPGDGQAAAA FT LLAPMDLGEEPLEKAARARPAKDPNTYKVLSLVLSVCVLTTILGCIFGLKPSC FT AKEVKSCKGRCFERTFGNCRCDVACVDLGNCCLDYQETCIEPERIWTCSKFRC FT GEKRLSRSLCSCSDDCRDKGDCCVNYSSVCLENCGTYTKNMRPVYPTKTFPNH FT YSIVTGLYPESHGIIDNKIYDPKMNAFFALKSKEKFNPEWYKGEPVIRALQRV FT DNMVGMLMDGLKGLNLHRCLNLILISDHGMEQGSCKKYVYLNKYLGDVKDIKI FT VYGPAARLRPSDVPNKYFSFNYEDLAKNLSALFIGYGPGFKHNIEVDSFENIE FT VYNLMCDLLNLTPAPNNGTHGSLNHLLKNPVYTPKNPKEVHPMVQCPFTRAPR FT HNLDCSCDPSDSFSTEDFSNCLYQDLRIPLSPIHKCSFYKNNAELSYGFLYPP FT LIWHYFHGTLLQRYVEERNGVNVVSGPVFDSDYDGRYDSSETLRQNSRLIHNQ FT EILIPTHFFIVLTNCKDTFQTPSQCDDLDSLAFILPHRADNSESCVHGKHESL FT WVEELLRLHRARITDVEHLTGLSFYQERRESISDILKLKTQLPAFDQED" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '-' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..213 FT /number=1 FT /note="FIRST EXON; p-value: 0.494." FT exon 214..286 FT /number=2 FT /note="INTERNAL EXON; p-value: 0.163." FT exon 287..403 FT /number=3 FT /note="INTERNAL EXON; p-value: 0.535." FT exon 404..529 FT /number=4 FT /note="INTERNAL EXON; p-value: 0.385." FT exon 530..609 FT /number=5 FT /note="INTERNAL EXON; p-value: 0.481." FT exon 610..729 FT /number=6 FT /note="INTERNAL EXON; p-value: 0.484." FT exon 730..838 FT /number=7 FT /note="INTERNAL EXON; p-value: 0.381." FT exon 839..970 FT /number=8 FT /note="INTERNAL EXON; p-value: 0.475." FT exon 971..1002 FT /number=9 FT /note="INTERNAL EXON; p-value: 0.782." FT exon 1003..1090 FT /number=10 FT /note="INTERNAL EXON; p-value: 0.983." FT exon 1091..1260 FT /number=11 FT /note="INTERNAL EXON; p-value: 0.852." FT exon 1261..1390 FT /number=12 FT /note="INTERNAL EXON; p-value: 0.809." FT exon 1391..1523 FT /number=13 FT /note="INTERNAL EXON; p-value: 0.887." FT exon 1524..1686 FT /number=14 FT /note="INTERNAL EXON; p-value: 0.769." FT exon 1687..1857 FT /number=15 FT /note="LAST EXON; p-value: 0.890." FT CONTIG join(NC_006583:3321651...3321439, 3289355...3289283, FT 3287512...3287396, 3286576...3286451, 3281582...3281503, FT 3280498...3280379, 3275635...3275527, 3273305...3273174, FT 3271405...3271374, 3267947...3267860, 3266237...3266068, FT 3261572...3261443, 3255938...3255806, 3254237...3254075, FT 3252171...3252001) XX SQ Sequence 1857 BP; 523 A; 419 C; 430 G; 485 T; other; atggagcgcg gcggccaggc gggcctcggc tcccgggagg gcccggcggg gaacggcccc 60 gacccgggct gcgctcgagc cgccgcggcg ccgggggatg ggcaggcagc cgcggccttg 120 ctggccccca tggacctggg ggaggagccg ctggagaagg cggcccgcgc ccgcccggcc 180 aaggacccca acacctacaa ggtgctctcg ctggtattgt cagtctgtgt gttaacaaca 240 attcttggtt gtatatttgg tttgaaacca agctgtgcca aagaagttaa aagttgcaaa 300 ggtcgttgtt ttgagagaac atttgggaac tgccgctgtg atgttgcttg tgttgacctt 360 ggaaactgct gtctggatta ccaggagacg tgcatagaac cagaacgcat atggacatgc 420 agcaagttca ggtgtggtga gaaaaggttg tccagaagtc tttgctcctg ttcagatgac 480 tgcagggaca agggcgactg ctgtgtcaac tatagttctg tatgcctaga aaactgtgga 540 acatatacca aaaacatgag accagtatat ccaacaaaaa cttttcctaa tcactacagc 600 attgtcactg gactttatcc agaatcccat ggcataattg acaataagat atatgatccc 660 aaaatgaatg ctttctttgc acttaaaagt aaggagaaat ttaatcctga gtggtacaaa 720 ggagaaccag tcatcagagc attgcagagg gttgacaaca tggttggcat gctgatggat 780 ggcctgaaag ggctgaactt gcatcgatgc ctgaacctca tccttatatc agaccatggc 840 atggaacaag gcagttgcaa gaaatatgta tatctgaata aatatttggg agatgttaaa 900 gatatcaaaa ttgtatatgg acctgcagct cgattgagac cctctgatgt cccaaataag 960 tacttttcat ttaattatga agatcttgcc aaaaatcttt ctgcactttt tattggctat 1020 ggacctggat tcaagcacaa cattgaagtt gactcctttg aaaatattga agtctataat 1080 ttaatgtgtg atttactgaa tttgacacct gctcctaata atggaactca tggaagtctt 1140 aaccaccttc taaagaatcc tgtctacacc ccaaagaacc ccaaagaagt tcatcccatg 1200 gtacagtgcc ccttcacaag agcccccaga cataaccttg actgctcatg cgatccctca 1260 gacagtttct ctacagaaga cttttccaac tgtctttacc aggatcttcg aattcctctg 1320 agtcctatcc ataagtgttc cttttataaa aataatgctg aactgagtta tgggttcctc 1380 tatccaccac ttatatggca ctactttcat ggtacccttc tgcaaagata tgtggaggaa 1440 agaaatggtg tcaatgttgt cagcggtcct gtgtttgact ctgattatga tggacgttat 1500 gattcctcag agaccttgag gcaaaacagc cgactcatcc ataatcaaga aattctgatc 1560 ccaactcact tcttcattgt gctgacaaat tgtaaagaca cattccagac tccctcacag 1620 tgtgatgatt tagacagctt agctttcatt ttgcctcaca gggctgacaa cagtgagagc 1680 tgtgtgcatg gaaagcatga gtctctgtgg gttgaagagt tactgaggtt acacagagct 1740 cggatcacag atgttgaaca cctcactgga ctcagcttct atcaagaaag aagagagtca 1800 atttcagaca ttctaaagtt gaaaacacag ctgccagcct ttgaccaaga agactga 1857 // ID NC006583_16; SV 1; special; RNA; MAM; 1938 BP. XX AC NC006583_16; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_16; NC006583_16. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..1938 FT /organism="Canis familiaris" FT CDS 1..1938 FT /protein_id="NC006583_16" FT /db_xref="trGEN:NC006583_16" FT /translation="MDDPQEKRRHRKKLAPGTGKLANKTSWVQGATGTKQYSW FT TTRRTVDLGTGQVSHSFMVIPECPYPLLGRDLLTKMGAQICFHLEGAKVLNKK FT GHPIQVLVLSLEDEYCLHQIPSVSMTDIDRWLREFPQAWAETGGIGRAQHLPA FT IYIELKPGADPVRVRQYPMPLVARKGITPHTRRLLDSGILRPCQSAWNTPLLP FT VPKPHSNDYRPVQDLRGVNRRVEDMHPTVPNTYTLLSTLPPDKTWYTVLDLKD FT AFFSLPLAPRSQDLFAFEWMDPEKGINGQLTWTRLPQGFKNSPTIFNEALHKD FT LNGQRWLTDARKETVLRIPQPQTVRQVHGIRTDLQDQPLPNADATWYTDGSSF FT VQEGFRYAGAAITTESAQWAELIPLAKALTMGEERELLTAEAKTVKNKTEILE FT LLRALWLPKALAIIHCPGHQKADTPVARGNRLADLKAKEASLLVTQVLASTLP FT NPGALTQPDTPNYTDADLHWIKRLPVTQCLRGWWRATDSSIILPEELGRRVLS FT KTHRSTHTGTGKMEDLIRHAKITIKDSRAKIEQIVASCRACQLTNASTHGSNP FT GTRLRGDRPGAYWEVDFTEVKPGKYGYRVRNSPYKMGLTPYEIMFGLPPPVIP FT NLKPEVLDEFDDHQLLFSLQMLQ" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '-' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..55 FT /number=1 FT /note="FIRST EXON; p-value: 0.992." FT exon 56..916 FT /number=2 FT /note="INTERNAL EXON; p-value: 0.844." FT exon 917..1171 FT /number=3 FT /note="INTERNAL EXON; p-value: 0.687." FT exon 1172..1790 FT /number=4 FT /note="INTERNAL EXON; p-value: 0.437." FT exon 1791..1938 FT /number=5 FT /note="LAST EXON; p-value: 0.530." FT CONTIG join(NC_006583:3327830...3327776, 3327499...3326639, FT 3326439...3326185, 3326111...3325493, 3325154...3325007) XX SQ Sequence 1938 BP; 537 A; 547 C; 489 G; 365 T; other; atggacgacc cacaggaaaa acggaggcac cgcaagaagc tggctccagg gacagggaaa 60 ttggcaaaca aaacttcatg ggtgcaaggg gccacgggca ccaaacagta ctcatggact 120 acccgaagaa ctgtggatct cggcacgggc caggtatccc actccttcat ggtcatccct 180 gagtgtccct acccgttgtt aggtcgggat ttgctcacca agatgggggc acagatttgc 240 ttccaccttg aaggggcaaa agtcctaaac aagaaggggc acccgattca ggtgcttgtc 300 ctgagtttag aagatgaata ttgtctccac caaataccct cagtgtcaat gactgacatt 360 gaccgttggc tgcgggaatt tccccaagcg tgggcagaaa ctgggggaat cgggcgggcc 420 caacatctac cggccatata catagaacta aagccggggg ccgaccctgt cagggtccgc 480 caatacccca tgcctctagt agcacgaaag ggaatcacac cccacacacg gcgactactg 540 gactcgggca tattaaggcc ctgccaatcg gcatggaaca ctcccttgct gccggttcca 600 aaaccgcact ctaacgatta caggccagtc caggacttga ggggagtcaa ccggcgggta 660 gaggatatgc accctacggt cccaaacaca tacaccctcc tctccaccct gcctccagac 720 aaaacttggt atacagtatt agatttaaaa gatgcctttt tcagcctgcc tttagcaccc 780 agaagccaag acctcttcgc ctttgaatgg atggaccctg agaaaggcat caatggccag 840 ctcacctgga ctcgactacc acaaggattt aaaaattcac cgaccatctt caatgaggcc 900 ttacacaaag acttgaatgg acaaagatgg ttgacggatg cacggaagga aactgtctta 960 agaatcccac agccgcaaac cgtccgccag gtgcacggaa tcagaactga tctccaggac 1020 cagccactgc cgaatgcgga cgccacctgg tacacggacg gcagcagttt tgttcaagaa 1080 ggattcagat atgcgggggc agccataacc acggagtcgg ctcaatgggc agaactgatc 1140 ccactggcca aggcgctgac catgggggaa gagagagagc ttctgacagc agaggcaaag 1200 actgttaaaa acaaaacgga gattcttgaa ctcctgaggg ccctctggct gcccaaggcc 1260 ctagccatca tccactgtcc ggggcaccaa aaggcagaca cgccagtagc caggggaaac 1320 cggctagccg atttaaaagc aaaggaggcg tcccttttgg tgacccaggt cttagctagc 1380 acgctaccca atccgggggc actgacccag cctgacaccc ccaactacac tgatgctgac 1440 ttacactgga tcaaacgctt gcctgtgacc cagtgcttgc gtggctggtg gagggccaca 1500 gactccagca tcatcttgcc agaggaactg ggacggcgag tcctatccaa aacgcatcgg 1560 agtactcaca cgggaacagg gaagatggaa gacctcatac gacatgcaaa gatcactatt 1620 aaagactctc gagcaaagat cgagcagatc gtggcaagct gccgcgcatg ccaattaaca 1680 aatgcctcca cccatggatc taacccaggc acccggctcc gaggggaccg cccaggagcc 1740 tactgggaag tggacttcac tgaagtaaaa cctggaaaat acgggtatag ggtgaggaac 1800 tccccatata agatgggact gactccctac gagatcatgt tcggtcttcc tccacccgtt 1860 atccccaatt taaaacctga ggtgcttgat gaatttgatg atcaccaact tcttttctct 1920 ctccaaatgt tacaatga 1938 // ID NC006583_17; SV 1; special; RNA; MAM; 567 BP. XX AC NC006583_17; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_17; NC006583_17. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..567 FT /organism="Canis familiaris" FT CDS 1..567 FT /protein_id="NC006583_17" FT /db_xref="trGEN:NC006583_17" FT /translation="MRTLCDFMQISSAPATLVSWITNIILKGERVEVKAVIFR FT DKPDGHSDQVPYILVWQDMMENPPPWLKPFLPPKSGPTEILALQKAKKEIDSM FT PEAPLRPVFQDSSPEDLIDPPPYWASLPASAPPLEAQGAAEGAPPLPDEGVPV FT HGPAAGTHSQTQRTAPPPNAGGPTPPPFLSALWGPPPMRLANS" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '-' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..32 FT /number=1 FT /note="FIRST EXON; p-value: 0.248." FT exon 33..60 FT /number=2 FT /note="INTERNAL EXON; p-value: 0.039." FT exon 61..96 FT /number=3 FT /note="INTERNAL EXON; p-value: 0.054." FT exon 97..567 FT /number=4 FT /note="LAST EXON; p-value: 0.989." FT CONTIG join(NC_006583:3351276...3351245, 3347244...3347217, FT 3346199...3346164, 3329006...3328536) XX SQ Sequence 567 BP; 122 A; 198 C; 145 G; 102 T; other; atgaggaccc tttgtgactt catgcagatc agctctgctc cagccaccct ggtctcttgg 60 ataaccaaca ttatcttgaa gggggaacgc gttgaggtta aggccgtgat cttcagggac 120 aaaccagacg gccactctga ccaggtgccc tacatcctgg tctggcagga catgatggag 180 aatcctcctc cttggctaaa accattttta ccccccaaat caggacccac agagattcta 240 gccctgcaga aagccaaaaa ggagatcgac tctatgcccg aagcacccct tcgtccggtc 300 ttccaggatt cctccccgga ggacctgatt gacccgccgc cctactgggc atccctcccc 360 gcttctgccc ctccattgga ggcacagggg gctgcagaag gggcgccacc cctccctgac 420 gagggagtcc ctgtgcacgg gccagcagcg gggacacaca gtcagaccca gcggacggcc 480 ccacctccga atgcgggggg accgactcca ccgcccttcc tctccgcact atggggcccc 540 ccccccatga gactggcgaa cagctaa 567 // ID NC006583_18; SV 1; special; RNA; MAM; 885 BP. XX AC NC006583_18; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_18; NC006583_18. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..885 FT /organism="Canis familiaris" FT CDS 1..885 FT /protein_id="NC006583_18" FT /db_xref="trGEN:NC006583_18" FT /translation="MPRWRPELLWIHPQWGGGSSGRAAAQYSQHPASGVAYSH FT PTTVASYAIHQAPVAAHTVTAAHAPAGTTVAVARPAPVAVAAAAIAAAYGGYP FT TGHTASDYGSIQRQQEAPPPAPPATTQNYQDSYSYVRSTAPAVAYDSKQLPAQ FT PQPSVAETYYQIAPKAGYSQGATQYTQAQQTRQVTAIKPATPSPATTTFSIYP FT VSSIVQSVAVAATVVPSTIPRVLLIVPWQLLILVHLIQVMKQQYIQLHPSTTN FT SSSSNRSRQQRWRQQQRQQQLLLQQLPGQGPSLLKKHHSKINN" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '+' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..885 FT /number=1 FT /note="SINGLE EXON; p-value: 0.708." FT CONTIG join(NC_006583:3363252...3364136 FT join(NC_006583:3363252...3364136) XX SQ Sequence 885 BP; 239 A; 268 C; 192 G; 186 T; other; atgccaagat ggcggccgga actactttgg attcacccac agtggggcgg cggcagcagc 60 ggtagggctg cggcccagta tagccagcat ccagcttctg gtgtagccta ctctcatcca 120 actacagttg ctagctacgc tatccatcag gctccagtag ctgctcacac agttactgcg 180 gcccatgcac cagcaggcac cacagttgca gttgccaggc ctgccccagt agctgttgca 240 gctgctgcaa tagctgctgc ttatggaggc taccccactg gacatacagc aagtgactat 300 ggctctatcc agagacaaca agaagcacca ccaccagcac ccccagctac tacacagaac 360 taccaggact catactcata tgtaagatcc actgctcctg ctgtagcata tgatagtaag 420 cagctgcctg cccagcctca gccttctgtt gctgaaacct actatcagat tgcccccaaa 480 gcaggttata gccaaggtgc aactcagtat acacaagccc agcaaactcg acaagtgaca 540 gccataaaac cagccacacc aagtccagct accactactt tctccattta tcccgtatct 600 tccatcgttc agtcagtagc agttgcagct actgtggtgc catccactat acccagagtg 660 ctacttatag taccatggca gttacttatt ctggtacatc ttattcaggt tatgaagcag 720 cagtatattc agctgcatcc ttctactacc aacagcagca gcagcaacag aagcaggcag 780 cagcggtggc ggcagcagca gcggcagcag cagctgctat tgcagcagct gcctggacag 840 ggaccatctt tactaaaaaa gcaccattcc aaaataaaca actga 885 // ID NC006583_19; SV 1; special; RNA; MAM; 147 BP. XX AC NC006583_19; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_19; NC006583_19. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..147 FT /organism="Canis familiaris" FT CDS 1..147 FT /protein_id="NC006583_19" FT /db_xref="trGEN:NC006583_19" FT /translation="MEPPRKKEKKKKKKKKKKKKKKKKKKKKKKKKEDDNWLL FT PGTWMAFKG" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '+' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..15 FT /number=1 FT /note="FIRST EXON; p-value: 0.398." FT exon 16..132 FT /number=2 FT /note="INTERNAL EXON; p-value: 0.818." FT exon 133..147 FT /number=3 FT /note="LAST EXON; p-value: 0.067." FT CONTIG join(NC_006583:3374486...3374500, 3379156...3379272, FT 3394310...3394324) XX SQ Sequence 147 BP; 69 A; 18 C; 49 G; 11 T; other; atggagcctc ccaggaagaa ggagaagaag aagaagaaga agaagaagaa gaagaagaag 60 aagaagaaga agaagaagaa gaagaagaag aagaaagaag acgacaactg gctcttgccg 120 ggcacctgga tggcattcaa gggctag 147 // ID NC006583_20; SV 1; special; RNA; MAM; 618 BP. XX AC NC006583_20; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_20; NC006583_20. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..618 FT /organism="Canis familiaris" FT CDS 1..618 FT /protein_id="NC006583_20" FT /db_xref="trGEN:NC006583_20" FT /translation="MRYHLTPVRMVKSNKTGNNKCWRGCGERGTLLHCWWECE FT LVQPLWKTVWRFLKELKTELPYNPAIALLGIYPKDTDAVKAQDTCTPMFIAAM FT STIAKLWKEPRCPSKDEWIKKMWFMYTMEYYSAIRNDEYSPFVSTWIELEDIM FT LSELENRSPNSNSSTALLLDVWVNANLLTFYDLISFLNFNIEVILYYQLHNED FT MGIDPYN" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '+' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..444 FT /number=1 FT /note="FIRST EXON; p-value: 0.472." FT exon 445..618 FT /number=2 FT /note="LAST EXON; p-value: 0.989." FT CONTIG join(NC_006583:3396302...3396745, FT 3397333...3397506) XX SQ Sequence 618 BP; 209 A; 124 C; 137 G; 148 T; other; atgagatacc acctcacacc agtgagaatg gtgaaaagta acaagacagg aaacaacaaa 60 tgctggagag gatgtggaga aaggggaacc ctcttacact gttggtggga atgtgaactg 120 gtgcagccac tctggaaaac tgtgtggagg ttcctcaaag agttaaaaac agaactaccc 180 tacaacccag caattgcact gctggggatt taccccaaag atacagatgc agtgaaagcc 240 caagacactt gcaccccaat gtttatagca gcaatgtcca caatagccaa actgtggaag 300 gagcctcggt gtccatcgaa agatgaatgg ataaagaaga tgtggtttat gtatacaatg 360 gaatattact cagccattag aaatgacgaa tactcaccat ttgtttcaac atggatagaa 420 ctggaggata ttatgctgag tgaattggaa aacagaagcc ccaattccaa ctctagcacg 480 gcacttctgc tagatgtctg ggtgaatgct aatcttctca cattctatga cttgataagt 540 ttccttaatt ttaacataga ggtgatcctg tactaccaac ttcataatga agacatgggg 600 atagatcctt acaactaa 618 // ID NC006583_21; SV 1; special; RNA; MAM; 2628 BP. XX AC NC006583_21; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_21; NC006583_21. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..2628 FT /organism="Canis familiaris" FT CDS 1..2628 FT /protein_id="NC006583_21" FT /db_xref="trGEN:NC006583_21" FT /translation="MDEKGEITTNTKEIQTILKTYYEQLYTNKLGNLEEMDAF FT LESHKLPKLEQEEIENLNRPITREEIEAVIKNLPRHKSPGPDGFPGEFYQTFK FT EETIPILLKLFGKIERDGVLPNSFYEASITLIPKPDKDPAKKENYRPISLMNM FT DAEILNMIPANRIQQYIKEIIHHDQVGFIPRTQGWFNTHKTINVIHHISKRKT FT KNHMILSLDAEKAFDKIQHPFLIKTLQCVGIDRIFLNILKAIYEKPTANIILN FT GEALGAFPLRSGTRHGCPLSPLLFNIVLEVLASAIRQQKDIKGIQIGKEEVKL FT SLFTDEMILYIENPKVSTPRLLELIQQFGSVAGYKINAQKSVAFLYTNNETEE FT REIKESIPFTIAPKSIRYLGINLTKEINSKWMKDLNVRQDSIKILEENTGNTL FT FELGHSNFLQDTFTKAKETKGKMNYWEFIKIRSFCTAKDTVNKTNRQPTEWEK FT IFANDVSDKGLVSKIYKELIQLNSKETNNPIMKWAKDMKRNLTEEDIDMANMR FT MRKCSASLAIREIQIKTTMRYHLTPVRMGKSNKAGNHKCWRGCREKGTLLHCW FT SEYQLVQPLWKTVWRFFKELKIYLPYDPAIALLGIYSKDTDAMKRRDTCTPMF FT LAAMSTIAKLWKEPRCPSKDEWIKKMWFMYTMEYYSAIRNDKYPPFASTWMEL FT KGIMLSEHLTVKLANSEDKEKILKAARDKKSLTFLEEVLAVWKDRDGILPNLF FT YEASITLIPKPDKDSTKKENYRPISLMNTDAKILKKILANRIQQYIKEIIHHD FT KIGFIPGMQGWFNIHKAINVIDHMNKRKNKNHIILSIDAEKAFDKIQHPFLIK FT TLQSVGIEETFLNILKAIYEKPTANILNEETLGAFPLRTGT" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '+' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..1149 FT /number=1 FT /note="FIRST EXON; p-value: 0.375." FT exon 1150..2046 FT /number=2 FT /note="INTERNAL EXON; p-value: 0.393." FT exon 2047..2143 FT /number=3 FT /note="INTERNAL EXON; p-value: 0.128." FT exon 2144..2628 FT /number=4 FT /note="LAST EXON; p-value: 0.400." FT CONTIG join(NC_006583:3426181...3427329, 3427864...3428760, FT 3432300...3432396, 3434657...3435141) XX SQ Sequence 2628 BP; 1045 A; 554 C; 483 G; 546 T; other; atggatgaga aaggagagat cactaccaac accaaggaaa tacaaactat tttaaaaaca 60 tattatgaac agctatacac caataaatta ggcaatctag aagaaatgga cgcattcctg 120 gaaagccata aactaccaaa actggaacag gaagaaatag aaaacctgaa caggccaata 180 accagggagg aaattgaagc agtcatcaaa aacctcccaa gacacaaaag tccagggcca 240 gatggcttcc caggggaatt ctatcaaaca tttaaagaag aaaccatacc tattctccta 300 aagctgtttg gaaaaataga aagagatgga gtacttccaa attcgttcta tgaggccagc 360 atcaccttaa ttccaaaacc agacaaagac cccgccaaaa aggagaatta cagaccaata 420 tccctgatga acatggatgc agaaattctc aacatgatac cagccaatag gatccaacag 480 tacattaagg agattattca ccatgaccaa gtaggattta tccccaggac acaaggctgg 540 ttcaacactc ataaaacaat caatgtgatt catcatatca gcaagagaaa aaccaagaac 600 catatgatcc tctcattaga tgcagagaaa gcatttgaca aaatacagca tccattcctg 660 atcaaaactc ttcagtgtgt agggatagac agaatattcc tcaacatctt aaaagccatc 720 tacgaaaagc ccacagcaaa tataatcctc aatggggaag cactgggagc ctttccccta 780 agatcaggaa caagacacgg atgtccactc tcaccactgc tattcaacat agtactggaa 840 gtcctagcct cagcaatcag acaacaaaaa gacattaaag gcattcaaat tggcaaagaa 900 gaagtcaaac tctccctctt cactgatgaa atgatactct acatagaaaa cccaaaagtc 960 tccaccccaa gattgctaga actcatacag caatttggta gtgtggcagg atacaaaatc 1020 aatgcccaga aatcagtggc atttctatac actaacaatg agactgaaga aagagaaatt 1080 aaagagtcaa tcccatttac aattgcaccc aaaagcataa gatacctagg aataaaccta 1140 accaaagaga taaactcaaa atggatgaaa gatctaaatg tgcgacaaga ttccatcaaa 1200 atcctagagg agaacacagg caacaccctt tttgaactcg gccacagtaa cttcttgcaa 1260 gatacattca cgaaggccaa agaaacaaaa ggaaaaatga actattggga attcatcaag 1320 ataagaagct tttgcacagc aaaggataca gtcaacaaaa ctaacagaca acctacagaa 1380 tgggagaaga tatttgcaaa tgacgtatca gataaagggc tagtttccaa gatctataaa 1440 gaacttattc aactcaacag caaagaaaca aacaatccaa tcatgaaatg ggcaaaagac 1500 atgaagagaa atctcacaga ggaagacata gacatggcca acatgcgcat gagaaaatgc 1560 tctgcatcac ttgccatcag ggaaatacaa atcaaaacca caatgagata ccacctcaca 1620 ccagtgagaa tgggaaaaag taacaaggca ggaaaccaca aatgttggag aggatgcaga 1680 gaaaagggaa ccctcttaca ctgttggtcg gaatatcaac tggtgcagcc gctctggaaa 1740 actgtgtgga ggttcttcaa agagttaaaa atatacctgc cctacgaccc agcaattgca 1800 ctgttgggga tttactccaa agatacagat gcaatgaaac gccgggacac ctgcaccccg 1860 atgtttctag cagcaatgtc cacaatagcc aaactgtgga aggagcctcg gtgtccatcg 1920 aaagatgaat ggataaagaa gatgtggttt atgtatacaa tggaatatta ctcagctatt 1980 agaaatgaca aatacccacc atttgcttca acgtggatgg aactgaaggg tattatgctg 2040 agtgaacatt taacagtgaa acttgcaaat tctgaagata aagagaagat ccttaaagca 2100 gcaagagaca agaaatccct aacctttctg gaagaagtat tagctgtttg gaaagataga 2160 gatggaatac ttccaaattt gttctatgag gccagcatca ccttaattcc aaaaccagac 2220 aaagactcca ccaaaaagga gaattataga ccaatatccc tgatgaacac agatgcaaaa 2280 attctcaaaa agatactagc caataggatc caacaataca ttaaggagat tattcaccat 2340 gacaaaattg gatttatccc tgggatgcaa ggctggttca acattcataa agcaatcaat 2400 gtgatagatc atatgaacaa gagaaaaaac aagaaccata ttatcctctc aattgatgca 2460 gagaaagcat ttgacaaaat acagcatcca ttcctgatca aaactcttca gagtgtagga 2520 atagaggaaa cattcctcaa catcttaaaa gccatctatg aaaagcccac agcaaatatt 2580 ctcaatgagg aaacactggg agcctttccc ctaagaacag gaacatga 2628 // ID NC006583_22; SV 1; special; RNA; MAM; 1083 BP. XX AC NC006583_22; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_22; NC006583_22. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..1083 FT /organism="Canis familiaris" FT CDS 1..1083 FT /protein_id="NC006583_22" FT /db_xref="trGEN:NC006583_22" FT /translation="MNEKGEISTNTKEIQTILKTYYELFYANKLGNLEEMDAL FT LENHKLPNLEQEEIDNLNRPITREEIEAVIKNLPRHKSPGPDGFPGEFYQTFK FT EETIPILLKLFGKIERDGVLPNSFDEASIALIPKPDKDPTKKENCRPISLMNT FT DAKILKKILANRIQQYIKKIIHHDKNLRKRQAASCRLGRFVSPGPPESNAWNL FT LTEDLATPHLHTQTTSVSIIKRVVSRKWPRFEWSYIVIPTNESLVETWLQDTL FT AYETGTHLVSLAVPHCLSIEFLTPSFYMIVRICGRGKRHAASLEALCLQVQQR FT ALHGTSSPMILIRSNSRYLLDVACEASVKLHTWKACVSKFDTAFAMEIPTVNG FT VRL" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '-' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..510 FT /number=1 FT /note="FIRST EXON; p-value: 0.898." FT exon 511..627 FT /number=2 FT /note="INTERNAL EXON; p-value: 0.252." FT exon 628..962 FT /number=3 FT /note="INTERNAL EXON; p-value: 0.225." FT exon 963..1083 FT /number=4 FT /note="LAST EXON; p-value: 0.304." FT CONTIG join(NC_006583:3445359...3444850, 3442257...3442141, FT 3439339...3439005, 3437368...3437248) XX SQ Sequence 1083 BP; 349 A; 264 C; 232 G; 238 T; other; atgaatgaga aaggagagat ctccaccaat accaaggaaa tacaaacgat tttgaaaaca 60 tattatgagc tgttctacgc caataaatta ggtaatctag aagaaatgga cgcacttctg 120 gaaaatcaca aactaccaaa tctggaacag gaagaaatag acaacctgaa caggccgata 180 accagggagg aaattgaagc agtcatcaaa aacctcccaa gacacaaaag tccagggcca 240 gatggcttcc caggggaatt ctatcaaacg tttaaagaag aaaccatacc tattctacta 300 aagctgtttg gaaagataga acgagatgga gtacttccaa actccttcga tgaggccagc 360 atcgccttaa ttccaaaacc agacaaagac cccaccaaaa aggagaattg tagaccaata 420 tccctgatga acacagatgc aaaaattctc aagaagatac tagccaatag gatccaacaa 480 tacattaaaa agattattca ccatgacaaa aatctgcgga agaggcaagc agcaagctgc 540 cggcttggaa ggtttgtgtc tccaggtcca ccagagtcca atgcatggaa cctcctcacc 600 gaggatcttg ctacgcccca tctccacacc cagacgacca gtgtctccat catcaagaga 660 gtagtttcca ggaaatggcc tcgcttcgaa tggagctaca tagtcattcc cacaaacgag 720 agtctagttg aaacctggct tcaggacaca ctggcctatg aaacaggaac acacctggtg 780 tccctggcag ttccacattg cctctccatt gagtttctga caccctcgtt ttacatgatt 840 gtccgaatct gcgggagagg caagcggcac gctgccagct tggaagcttt gtgtctccag 900 gtccagcaga gggcattgca tggaacctcc tcgccaatga tcttgatacg ctccaactcc 960 aggtacttgt tagatgttgc ctgtgaggca agtgtcaagc ttcacacctg gaaagcctgt 1020 gtctccaagt tcgatacagc ttttgcaatg gaaattccta ctgtgaatgg tgttaggttg 1080 taa 1083 // ID NC006583_23; SV 1; special; RNA; MAM; 630 BP. XX AC NC006583_23; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_23; NC006583_23. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..630 FT /organism="Canis familiaris" FT CDS 1..630 FT /protein_id="NC006583_23" FT /db_xref="trGEN:NC006583_23" FT /translation="MRSRAKATRQEAGGLPIFPDRKGTCRELRQDPRRGRDAL FT RFQGALTEELCPGGEPTTHHGQSSLKAWSVCLVGPGEQLRQLREQLGGGGVEA FT LRGPVSPSGGGSGGGSTRWGVCGPGAQGAGGQSLTSGAPPRTDRGWEDTGQQG FT GSCRLAAPSCADGRPHPPEHPGPCGLGAAVVTVEADSRVGKLATIIVVPPGVT FT LYLGLSRGLAG" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '-' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..630 FT /number=1 FT /note="SINGLE EXON; p-value: 0.922." FT CONTIG join(NC_006583:3448598...3447969 FT join(NC_006583:3448598...3447969) XX SQ Sequence 630 BP; 124 A; 179 C; 234 G; 93 T; other; atgaggagcc gggctaaggc tacacggcaa gaagcaggag gtttaccaat tttcccagac 60 cgaaaaggca cttgcaggga gctccggcag gatcccagga ggggcaggga tgccctcagg 120 ttccaagggg cactaacaga ggaactgtgc cccgggggag agcccaccac acaccatggg 180 cagagctccc taaaggcctg gagcgtgtgc ttggtggggc ctggagagca gctcaggcag 240 ctcagggagc agctgggggg ggggggggtg gaggcgctgc gcggtcctgt gagcccctcg 300 ggtggcggct ctggcggcgg ctccacgagg tggggggtgt gcggccccgg agcccagggt 360 gctgggggac aaagcctaac atccggcgct ccccccagga cagacagagg ctgggaggac 420 acaggacagc aaggaggctc ctgccgcctg gcagccccaa gctgtgcaga tgggcggccc 480 catccccccg agcatccagg cccctgtgga ctgggagctg cggtagttac tgtggaagct 540 gactccagag ttggaaagct ggccaccata attgttgttc ctcctggtgt caccttgtac 600 ctgggactca gcaggggcct cgcaggataa 630 // ID NC006583_24; SV 1; special; RNA; MAM; 372 BP. XX AC NC006583_24; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_24; NC006583_24. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..372 FT /organism="Canis familiaris" FT CDS 1..372 FT /protein_id="NC006583_24" FT /db_xref="trGEN:NC006583_24" FT /translation="MGNYEGQHQCSTLRTMNTITKLWKEPRCPSNDEWIKKMC FT SMYTLEYYSAIRNDKYPSFASTWMELEDNMLSEVATCFLLNFSEASNLKELEA FT MSTGRVDLRETTNLLNSQKEVRFEAGFQINK" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '+' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..43 FT /number=1 FT /note="FIRST EXON; p-value: 0.551." FT exon 44..216 FT /number=2 FT /note="INTERNAL EXON; p-value: 0.280." FT exon 217..360 FT /number=3 FT /note="INTERNAL EXON; p-value: 0.739." FT exon 361..372 FT /number=4 FT /note="LAST EXON; p-value: 0.212." FT CONTIG join(NC_006583:3455643...3455685, 3457773...3457945, FT 3459692...3459835, 3471129...3471140) XX SQ Sequence 372 BP; 124 A; 72 C; 84 G; 92 T; other; atggggaact acgagggaca gcaccagtgc tcaactctca gaacaatgaa cacaataacc 60 aaactgtgga aggagcctcg gtgtccatca aacgatgaat ggataaagaa gatgtgttct 120 atgtatacgt tggaatatta ctcagccatt agaaacgaca aatacccatc atttgcttca 180 acgtggatgg aactggagga taatatgctg agtgaagtgg ctacttgctt cttactcaac 240 ttctctgagg catctaactt aaaggagtta gaagctatgt ctacaggccg tgtggatctg 300 cgagagacaa caaatttgct caattctcag aaggaagtac gctttgaagc cggctttcaa 360 ataaataaat aa 372 // ID NC006583_25; SV 1; special; RNA; MAM; 486 BP. XX AC NC006583_25; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_25; NC006583_25. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..486 FT /organism="Canis familiaris" FT CDS 1..486 FT /protein_id="NC006583_25" FT /db_xref="trGEN:NC006583_25" FT /translation="MDVLAMDVLVMNALAMDVLVMNALAMDVLAMAVLAMDVL FT AMDAPYPDGALDDPSSVNNRRSLNFAKVEQRTTYGGMEEEGAGILSIFWRLNL FT AASMDSWSQATIGSRIAQDNGKNRPKLEPSPGHLVEVNRITVGARMTQKLQVP FT RLGNVADESFDHYHRH" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '+' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..138 FT /number=1 FT /note="FIRST EXON; p-value: 0.629." FT exon 139..270 FT /number=2 FT /note="INTERNAL EXON; p-value: 0.079." FT exon 271..437 FT /number=3 FT /note="INTERNAL EXON; p-value: 0.039." FT exon 438..486 FT /number=4 FT /note="LAST EXON; p-value: 0.283." FT CONTIG join(NC_006583:3477898...3478035, 3480309...3480440, FT 3485641...3485807, 3487757...3487805) XX SQ Sequence 486 BP; 121 A; 117 C; 145 G; 103 T; other; atggatgtgc ttgccatgga tgtactggtc atgaatgccc tggccatgga tgtgctggtc 60 atgaatgccc tggccatgga tgtcctggcc atggctgtgc tggccatgga tgtcctggcc 120 atggatgccc cctatccaga tggagcactg gatgacccat catcagtgaa caacagaaga 180 tccttaaact ttgccaaggt agagcagagg accacctatg ggggaatgga agaggaaggt 240 gctgggatcc tgagcatctt ctggagactg aacctggcag ctagtatgga cagctggagc 300 caagccacta ttggttcccg tatcgcccaa gataacggca aaaatcggcc caaattagaa 360 ccctcccctg gtcatctagt ggaggtaaac agaatcacgg tgggggcgcg catgacacag 420 aagttgcagg tgcccaggct tgggaatgtg gctgatgaga gctttgacca ctaccatagg 480 cactga 486 // ID NC006583_26; SV 1; special; RNA; MAM; 189 BP. XX AC NC006583_26; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_26; NC006583_26. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..189 FT /organism="Canis familiaris" FT CDS 1..189 FT /protein_id="NC006583_26" FT /db_xref="trGEN:NC006583_26" FT /translation="MQSLGSLSAPGASVILVGAAATRVTSPGGESSCSCAQSS FT TGNALGPGTAGYVTEQMPFELHG" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '+' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..95 FT /number=1 FT /note="FIRST EXON; p-value: 0.992." FT exon 96..189 FT /number=2 FT /note="LAST EXON; p-value: 0.967." FT CONTIG join(NC_006583:3495197...3495291, FT 3495813...3495906) XX SQ Sequence 189 BP; 37 A; 53 C; 58 G; 41 T; other; atgcagtctc tgggctccct ctctgcaccg ggagcctcgg tgattctggt gggagcagct 60 gccaccaggg tcacatcacc tggaggagag tctagctgca gctgtgcaca gagtagtact 120 ggcaacgccc taggccctgg cacagctgga tatgtcactg agcagatgcc ctttgaattg 180 catggctag 189 // ID NC006583_27; SV 1; special; RNA; MAM; 606 BP. XX AC NC006583_27; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_27; NC006583_27. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..606 FT /organism="Canis familiaris" FT CDS 1..606 FT /protein_id="NC006583_27" FT /db_xref="trGEN:NC006583_27" FT /translation="MFNATGGKYSISSFATSCCECQPREAISHQQFGAEFRRF FT SLDRHKPGKFEDFYKLVVHTHHIANTDVTIGYADVHGDLLPINNDDNFCKAVS FT SANPLLRVFIQKRGSEGCLRLGAEVEALPRALFPEAPVVVTPCAADSPKLRWC FT RELQGSCACKGDRHADFPGRLTRHWLGPASCFIIHYAQFSWLARVKVSADPPP FT SVM" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '+' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..93 FT /number=1 FT /note="FIRST EXON; p-value: 0.216." FT exon 94..316 FT /number=2 FT /note="INTERNAL EXON; p-value: 0.992." FT exon 317..606 FT /number=3 FT /note="LAST EXON; p-value: 0.524." FT CONTIG join(NC_006583:3504254...3504346, 3510125...3510347, FT 3511788...3512077) XX SQ Sequence 606 BP; 118 A; 178 C; 175 G; 135 T; other; atgtttaatg ctacaggagg caagtatagc atcagctcct ttgctacttc ttgctgtgaa 60 tgtcagcccc gagaagccat ctcacatcag cagtttgggg ctgagttccg aaggttctcc 120 ttggaccggc acaagcctgg gaagtttgaa gacttctaca agctggtcgt gcacacgcac 180 cacatcgcca acacagatgt gaccatcggc tatgcagatg tgcacgggga cctgctgccc 240 atcaacaacg atgacaactt ttgcaaggcg gtctcaagcg caaaccctct gctccgggtc 300 ttcatccaga agcgaggaag tgagggctgc ctgaggctcg gagctgaggt ggaggcactg 360 ccgagggcac tgttccctga agcgccagtg gtcgtgacgc cctgtgctgc tgactccccg 420 aagctgcggt ggtgccggga gctccagggt tcgtgtgcct gcaaggggga cagacacgct 480 gactttccag ggcggctcac acgccactgg ctgggccctg cctcctgttt cattattcac 540 tatgctcagt tttcctggct ggccagggtc aaggtgtccg ctgacccccc cccttctgtc 600 atgtga 606 // ID NC006583_28; SV 1; special; RNA; MAM; 2733 BP. XX AC NC006583_28; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_28; NC006583_28. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..2733 FT /organism="Canis familiaris" FT CDS 1..2733 FT /protein_id="NC006583_28" FT /db_xref="trGEN:NC006583_28" FT /translation="MLLQVAGYGKPAELPSLKPGDKYTRLNVLDHMLCEAEVS FT LAGGPEGSGAPPTVWQMCFPLDISPSTSQMRVGIVTALPLSSLPVAVLTEDQG FT RALEALEAVTPECGADDRKSASPSPAMLSGFVFPAPLDGPSFWTRIDVHPGTI FT VSVSYTVEIVLRLACLETVLPELMKQCQRGLGPRPKGIPMPMHAALCSRFPES FT RPERRTATRIICQSQFILCRPRPGPPDPGSTHRTPAFLTLSDRASAGALWSHT FT LMGRQTPPRGLLVVATPGFGGSRSMLELTLGFALFPELADPGASAALGAKGLG FT QWLNPKPLGCLHSSAAIPPPMPPQLRLFPLGRRRCWGDSGTEAGYTAERARPL FT RVVGTGWGARSSIGGPGGSDLLMVGPGPGKEQHRALRWRLSFLRMRPAWQYAD FT CCLAEQVKHVRKATPKRQVMATTDGVSSCVCVRVVTMTPSGGVCGHRHVCRPE FT EQPGPSAHTWQHDPRDVLTIRPGVEVCTAPSLPTASCPTVRLQRLGWTNAGES FT MCWNLVHPSESLKATHILSECFCAMARMRGALPPRLRPSPRIHEGNGRNQEEA FT ELLNAYPPPEKSSSGQVALCDQDGLMCAVIARTFLRLPPKFSDRSMNLEADTA FT HVLEVSAEFLDVRVRQRTKGITQAEVRLAQPRVCGKHRTALFTRQALHTLVPG FT RLLELGSSSSKAQSSRREPRSLGSCGTANQPHIIYFWVCPPGCFWKQAKQTTP FT SNVEGAHPVPNPLDLDGAGGWRRGEFSVGLSWDRPQVVVDALGNRWCPGWLSV FT PWVIVGALGCHHQGPRSSSGPRVVIRALGHGQCPGSSSVPQVVIGAPGRQCPG FT SLSVPWDVISTLGHCQCPESSSVPCVVVSAPGCHRQCPRSSSGPWDISALVLG FT LWGLVHRGLSWVPSLQMQIVGPL" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '+' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..119 FT /number=1 FT /note="FIRST EXON; p-value: 0.807." FT exon 120..278 FT /number=2 FT /note="INTERNAL EXON; p-value: 0.008." FT exon 279..399 FT /number=3 FT /note="INTERNAL EXON; p-value: 0.013." FT exon 400..528 FT /number=4 FT /note="INTERNAL EXON; p-value: 0.011." FT exon 529..692 FT /number=5 FT /note="INTERNAL EXON; p-value: 0.010." FT exon 693..1185 FT /number=6 FT /note="INTERNAL EXON; p-value: 0.072." FT exon 1186..1691 FT /number=7 FT /note="INTERNAL EXON; p-value: 0.773." FT exon 1692..1792 FT /number=8 FT /note="INTERNAL EXON; p-value: 0.911." FT exon 1793..1890 FT /number=9 FT /note="INTERNAL EXON; p-value: 0.513." FT exon 1891..2733 FT /number=10 FT /note="LAST EXON; p-value: 0.405." FT CONTIG join(NC_006583:3520243...3520361, 3523436...3523594, FT 3528440...3528560, 3528726...3528854, 3532314...3532477, FT 3533521...3534013, 3541161...3541666, 3541757...3541857, FT 3542831...3542928, 3543949...3544791) XX SQ Sequence 2733 BP; 503 A; 852 C; 841 G; 537 T; other; atgttgctgc aggtggcagg ttatgggaag cctgctgagc tgccttctct gaagcctggt 60 gataagtaca cacgcctgaa tgtcctggac cacatgctct gtgaagcaga agtgtctttg 120 gcaggaggcc ccgagggctc cggggctcca ccaacagtgt ggcagatgtg cttccctctg 180 gacatttctc cttccacctc ccagatgcga gtaggcatcg tgacagccct gcccctcagc 240 tccctccctg tggctgtgct gactgaggat cagggccgtg ccctcgaggc cctggaggcc 300 gtgaccccag agtgtggcgc agatgacagg aagtcggcca gcccaagccc agccatgctg 360 tctgggttcg tcttccctgc cccattggat ggcccatctt tctggactcg cattgacgtt 420 caccctggca ccatcgtctc tgtctcatac acagtggaga tcgtgttgcg tctcgcttgt 480 ctggaaactg tgctaccaga gttaatgaaa cagtgtcagc gaggtctggg gcccaggccg 540 aagggtatcc caatgcccat gcatgctgcc ctgtgcagca ggttccccga gtcccggcca 600 gagcggagga cagccacacg catcatctgc cagagccagt tcatcctctg cagaccacgt 660 ccaggtccac cagaccccgg ctctacccac aggacacctg cgttcctgac cctaagtgac 720 cgagcatctg caggagcgct gtggagccac actctgatgg gaaggcagac tcctccccgg 780 ggacttcttg tggtggccac accgggcttt gggggcagcc gttcaatgct agagctgacc 840 cttggctttg cccttttccc tgagctcgct gatccagggg ccagtgcagc cttgggggcc 900 aaggggctgg ggcagtggct gaacccgaag cccctggggt gtctgcactc atctgccgcc 960 atcccaccgc ccatgccgcc tcaactcagg ctcttccccc tcggccgtag gcgctgctgg 1020 ggggactcag gcacagaggc cgggtacact gcagagcgag cgcggcccct gcgggtggtg 1080 gggacgggct ggggggcacg tagcagcatt gggggccctg ggggctctga cctgctgatg 1140 gtaggacccg gccctggcaa ggaacagcat cgtgccctgc gctggcgtct atcattcctc 1200 cgcatgaggc ctgcatggca gtatgccgac tgctgcttgg cagagcaggt caagcatgtg 1260 cgcaaggcca cccccaaacg gcaggttatg gccaccacag acggtgtctc ctcatgtgtc 1320 tgtgtccgtg ttgtcaccat gacacccagt gggggggtgt gcggccacag gcacgtctgc 1380 aggccagagg agcagcccgg gccctctgcc cacacctggc agcatgaccc ccgggacgtg 1440 ctcaccatcc gacctggggt ggaggtgtgc acagccccct cgctgccgac tgccagctgt 1500 ccgacggtcc gactgcaacg gctgggttgg acaaacgcag gcgagtccat gtgttggaat 1560 cttgttcatc cctcagagtc tctcaaagca acacatatac tgagcgagtg tttctgcgcc 1620 atggcacgga tgagaggagc actgccaccc agactgcgac cctctccccg catacacgag 1680 ggcaacggca gaaaccagga ggaggcagag ttactgaatg cgtatccacc cccagagaag 1740 agcagcagcg ggcaggtagc cctttgtgac caggacggcc tcatgtgtgc agttatagca 1800 agaacattcc taaggttgcc accaaaattc tcagacaggt ccatgaacct ggaggcagac 1860 actgcacacg tcctcgaggt cagcgccgag ttccttgatg tcagggtcag acaaagaacc 1920 aagggcatca ctcaggctga agtcagactc gcgcaaccca gggtctgcgg aaaacaccgc 1980 acggccctgt ttacaaggca ggccctacac acactcgtcc caggccgcct tctggaactc 2040 ggcagcagca gctccaaggc ccagagcagc aggcgggagc cccggagcct agggagctgc 2100 gggacagcca accagcctca cataatatat ttctgggtgt gtccccccgg gtgtttctgg 2160 aagcaagcaa agcagaccac cccctccaat gtggaggggg cacatccagt ccccaatcca 2220 ctggacctgg atggagcagg aggatggagg aggggcgaat tctctgttgg cttgagctgg 2280 gacaggcccc aggtcgtcgt cgatgccctg ggtaatcgtt ggtgccccgg gtggttgtca 2340 gtgccctggg tcattgtcgg tgccctggga tgtcatcatc agggccccag gtcatcgtca 2400 gggccccggg tcgtcatcag agccctgggt catggtcagt gccccgggtc atcgtcggtg 2460 ccccaggttg tcatcggtgc cccaggtcgt cagtgccctg ggtcgttgtc ggtgccctgg 2520 gacgtcatca gtacccttgg tcattgtcag tgccctgagt catcttcagt accctgcgtt 2580 gttgtcagtg ccccaggatg tcatcgtcag tgccccaggt catcgtcagg gccctgggac 2640 atcagtgccc tggttcttgg gctgtggggc ttggtgcacc gtgggctctc ctgggtcccc 2700 agcttacaga tgcagattgt gggacctctg tga 2733 // ID NC006583_29; SV 1; special; RNA; MAM; 1842 BP. XX AC NC006583_29; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_29; NC006583_29. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..1842 FT /organism="Canis familiaris" FT CDS 1..1842 FT /protein_id="NC006583_29" FT /db_xref="trGEN:NC006583_29" FT /translation="MDKFLETQNLPTPNHEEIKNLNRSITSKEIESVINNLST FT KINSKWMKDLNVRQDSIKILEENTGNTLFELGHSNFLQDTSMKTRETKAKMNY FT WDFKIRSFCTAKERVNKTKRQPTEWEKIFANNLSDKGLVSKIYKELIKVNTQA FT TNNPIMKWAKDMNRNFIKDIHMANKHMRKCSASLAIREIQMKTTMRYHLTPVR FT MGKINKTGNNKCWRGCGERGTLLHCWWECELVQPLWKTVWRFLKELKIDLPYD FT PAIALLGIYPKDTDAVKCRDTCTPMFIAAMSTIAKLWKEPRCPSKDEWIKKMW FT SMYTMEYSSAIRNDRYPPFASTWMELEDIMLSEIQWNPYQNPMAFFVEIVILI FT LKFILSLKKIPTAKIILKTRNKAGGLTLPDFKTNPKALLVNTVQHRDKGRSTP FT GADGEPVGKPPWMWLADINTQEPKLGRTLTGTHETICMSTPALPRSPGCKTKD FT GSIGRKSAKKPEQNSWMKAKTLLSRGQRGQRGKTHSDPGALPCPPPQETAEAE FT RGAQWAHRGEPTSWQTLQELKGKSRTFCLWLTSHVHNMPSTTGPAGVSRAANH FT SGAHTAFTRLGDSHEDRPTPSHFMLQHMLKGENRHVFADHVSDS" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '-' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..1011 FT /number=1 FT /note="FIRST EXON; p-value: 0.545." FT exon 1012..1271 FT /number=2 FT /note="INTERNAL EXON; p-value: 0.318." FT exon 1272..1303 FT /number=3 FT /note="INTERNAL EXON; p-value: 0.266." FT exon 1304..1437 FT /number=4 FT /note="INTERNAL EXON; p-value: 0.227." FT exon 1438..1564 FT /number=5 FT /note="INTERNAL EXON; p-value: 0.162." FT exon 1565..1842 FT /number=6 FT /note="LAST EXON; p-value: 0.152." FT CONTIG join(NC_006583:3555380...3554370, 3552848...3552589, FT 3550826...3550795, 3550164...3550031, 3548282...3548156, FT 3547922...3547645) XX SQ Sequence 1842 BP; 662 A; 434 C; 397 G; 349 T; other; atggacaaat ttctagaaac acaaaaccta ccaacaccaa atcatgagga aataaaaaac 60 ctgaatagat ctataactag taaggagatt gaatcagtga tcaataatct ctcaacaaag 120 ataaactcaa aatggatgaa agatcttaat gtgagacaag attccatcaa aatcctagag 180 gagaacacag gcaacaccct ttttgaactt ggccacagta actttttgca agatacatcc 240 atgaagacaa gagaaacaaa agcaaaaatg aactattggg acttcaagat aagaagcttt 300 tgcacagcaa aagaaagagt caacaaaact aaaagacaac ctacagaatg ggagaagata 360 tttgcaaata acctatcaga taaagggcta gtatccaaga tctataaaga acttatcaaa 420 gtcaacaccc aggcaacaaa caatccaatc atgaaatggg caaaagacat gaacagaaat 480 ttcatcaaag acatacacat ggccaataag cacatgagaa aatgctccgc atcacttgcc 540 atcagggaaa tacaaatgaa aaccacaatg agataccacc tcacaccagt gagaatgggg 600 aaaattaaca agacaggaaa caacaaatgt tggagaggat gtggagaaag gggaaccctc 660 ttacactgtt ggtgggaatg tgaactggtg cagccactct ggaaaactgt gtggaggttc 720 ctcaaagagt taaaaataga cctgccctac gacccagcaa ttgcactgct ggggatttac 780 cccaaagata cagatgcagt gaaatgccgg gacacctgca ccccgatgtt tatagcagca 840 atgtccacaa tagccaaact gtggaaggag cctcggtgtc catcgaaaga tgaatggata 900 aagaagatgt ggtctatgta tacaatggaa tattcctcag ccattagaaa cgacagatac 960 ccaccatttg cttcgacgtg gatggaactg gaggacatta tgctgagtga aattcagtgg 1020 aatccttatc aaaatccgat ggcttttttt gtagaaatag taatactcat cctgaaattc 1080 atactgagtc ttaaaaaaat cccaacagcc aaaataatcc tgaaaacaag gaacaaagct 1140 ggaggactta cacttcctga ttttaaaact aaccccaaag ctctattagt caacacagtt 1200 cagcaccggg ataaaggcag atccacccct ggggcagatg gagagcccgt gggcaagccc 1260 ccatggatgt ggttagcaga cataaacacc caagagccaa agttgggcag aaccctcacg 1320 ggcacccatg aaaccatctg catgtcaacc ccagcccttc ctcgttcacc tggatgcaaa 1380 acaaaagatg gatcaattgg aaggaaatca gccaagaagc ctgagcagaa cagctggatg 1440 aaagccaaga ccctgctctc cagaggccag agggggcagc gtggaaagac acattcagac 1500 cctggtgccc taccctgtcc accaccacag gagacagcag aagccgagag aggagcccag 1560 tgggcacaca gaggagaacc aacaagctgg caaaccctgc aggagctgaa agggaagtcc 1620 agaaccttct gtctgtggct gacatcacac gtccacaaca tgccatcaac caccggtccg 1680 gcaggtgttt ccagagcagc caaccacagc ggagcacaca ctgctttcac ccgcctaggg 1740 gacagccatg aggacagacc aactcccagc cacttcatgc ttcaacacat gctgaaaggt 1800 gaaaaccgcc atgtgtttgc tgaccatgtt tctgattcgt ga 1842 // ID NC006583_30; SV 1; special; RNA; MAM; 849 BP. XX AC NC006583_30; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_30; NC006583_30. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..849 FT /organism="Canis familiaris" FT CDS 1..849 FT /protein_id="NC006583_30" FT /db_xref="trGEN:NC006583_30" FT /translation="MLNESEEAEHGSFGAGSLSRRRKALALREDGPRRRTHLH FT IGLPHDFRPVSSIIDVDILPETHRRVRLYRHGCQKPLGFYIRDGTSVRVAPQG FT LEKVPGIFISRMVPGGLAESTGLLAVDDEVLEVNGIEVAGKTLDQVTDMMIAN FT SHNLIVTVKPANQRNNVVRGSRVAGGSGRSSDSGASRHSLPAAPALLRLQPDD FT VDSDDEPDVVLEGVLGPRPVPRLPPPPPPPAPGSQARVNGAGPGLGREGPAHR FT LLSSLRADPRHSLALPLPPGAVEEHGPAVTL" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '+' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..16 FT /number=1 FT /note="FIRST EXON; p-value: 0.547." FT exon 17..849 FT /number=2 FT /note="LAST EXON; p-value: 0.940." FT CONTIG join(NC_006583:3559247...3559262, FT 3564661...3565493) XX SQ Sequence 849 BP; 124 A; 305 C; 316 G; 104 T; other; atgttgaatg aatctgagga ggccgagcat ggcagcttcg gggctggctc gctgtcccgc 60 cgcaggaagg cactggcact gcgtgaggac ggcccccgcc ggcggacgca cctgcacatc 120 ggcctgccgc acgacttccg cccggtgtcc tccatcatcg acgtggacat cttgcccgag 180 acgcaccgcc gcgtgaggct gtacaggcac ggctgccaga agccgctggg tttctacatc 240 cgcgatggca cgagcgtgcg cgtggccccg cagggcctgg agaaggtgcc tggcatcttc 300 atctcgcgca tggtgcccgg cggcctggcc gagagcaccg ggttgctggc cgtggatgac 360 gaggtcctgg aggtgaacgg catcgaggtg gcggggaaga cgctggacca ggtcacggac 420 atgatgatcg ccaacagcca caacctcatc gtcacggtca agccggccaa ccagaggaac 480 aacgtggtgc gcggcagccg cgtggcgggc ggctcgggcc gctcctcgga cagcggggcc 540 agccgccaca gcctgcccgc ggcccccgcc ctgctgcgcc tgcagcccga cgacgtggac 600 agcgacgacg agcccgacgt ggtgctggag ggcgtgctgg ggccgcggcc ggtgcccagg 660 ctgcccccgc cgcccccgcc gcccgcgccg ggcagccagg cgcgggtcaa cggcgcaggc 720 cccgggctgg gcagggaggg cccggcgcac cggctgctca gctcgctgcg cgcagacccg 780 cgccacagcc tggccctgcc gctgcccccg ggggcggtgg aggagcacgg cccggcggtc 840 acgctgtag 849 // ID NC006583_31; SV 1; special; RNA; MAM; 279 BP. XX AC NC006583_31; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_31; NC006583_31. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..279 FT /organism="Canis familiaris" FT CDS 1..279 FT /protein_id="NC006583_31" FT /db_xref="trGEN:NC006583_31" FT /translation="MTRKRRKSDHAQEGQGCASLSTTPAAPSGPRDTAITELV FT IQHTVEATTITDISEASILDAYVPELYVNLHYCVSQAIRNKVVRLRSMEAQKD" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '+' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..279 FT /number=1 FT /note="SINGLE EXON; p-value: 0.936." FT CONTIG join(NC_006583:3570997...3571275 FT join(NC_006583:3570997...3571275) XX SQ Sequence 279 BP; 77 A; 76 C; 73 G; 53 T; other; atgaccagga aaagaaggaa gagtgatcat gcccaggagg gccagggctg tgcaagccta 60 tccaccacac cagctgcgcc cagtggaccc agagacacag ccattactga gctggttatt 120 cagcacacag tggaggctac caccatcaca gacatttccg aagccagtat cttggatgcc 180 tatgttcctg agctctatgt gaacctacat tactgtgtga gccaggccat tcgcaacaag 240 gtggtcaggc tccgttccat ggaagcacag aaggactga 279 // ID NC006583_32; SV 1; special; RNA; MAM; 1116 BP. XX AC NC006583_32; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_32; NC006583_32. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..1116 FT /organism="Canis familiaris" FT CDS 1..1116 FT /protein_id="NC006583_32" FT /db_xref="trGEN:NC006583_32" FT /translation="MTLNSYLSIVTLNVNGLNDPIKRRRVSDWIKKQDPSICC FT LQETHFRQKDTYSLKIKGWRTIYHSNGPQKKAGVAILISDKLKFTPKTVVRDE FT EGHYIILKGSIKQEDLTILNIYAPNPGTTKYINQLLTKVKKYLDNNTLILGDF FT NLALSILDRSSKHNISKETRALNDTLDQMDFTDIYRTLHPNSTEYTFFSSAHG FT TFSRIDHILGHKSGLNRYQKIGIVPCIFSDHNALKLELNHNKKFGRTSNTWRL FT RTILLKDERVNQEIMEELKRFMETNENEDTTVQNLWDAAKAVLRGKYIAIQAS FT IQKLERTQIQKLTLHIKELEKKQQIDPTPRRRRELIKIRAELTKSRPEELWNR FT STEPGVGSLKELIR" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '+' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..1116 FT /number=1 FT /note="SINGLE EXON; p-value: 0.574." FT CONTIG join(NC_006583:3575847...3576962 FT join(NC_006583:3575847...3576962) XX SQ Sequence 1116 BP; 441 A; 222 C; 204 G; 249 T; other; atgacactaa actcatatct ctcaatagta actctgaatg tgaacgggct taatgacccc 60 atcaaaaggc gcagggtttc agactggata aaaaagcagg acccatctat ttgctgtcta 120 caagagactc attttagaca gaaggacacc tacagcctga aaataaaagg ttggagaacc 180 atttaccatt cgaatggtcc tcaaaagaaa gcaggggtag ccatccttat atcagataaa 240 ctaaaattta ccccgaagac tgtagtaaga gatgaagagg gacactatat catacttaaa 300 ggatctatca aacaagagga cttaacaatc ctcaatatat atgccccgaa tccgggaact 360 accaaatata taaatcaatt attaaccaaa gtgaagaaat acttagataa taatacactt 420 atacttggtg acttcaatct agctctttct atactcgata ggtcttctaa gcacaacatc 480 tccaaagaaa cgagagcttt aaatgataca ctggaccaga tggatttcac agatatctac 540 agaactttac atccaaactc aactgaatac acattcttct caagtgcaca tggaactttc 600 tccagaatag accacatatt gggtcacaaa tcgggtctga accgatacca aaagattggg 660 atcgtcccct gcatattctc agaccataat gccttgaaat tagaactaaa tcacaacaag 720 aagtttggaa ggacctcaaa cacgtggagg ttaaggacca tcctgctaaa agatgaaagg 780 gtcaaccagg aaattatgga agaattaaaa agattcatgg aaactaatga gaatgaagat 840 acaaccgttc aaaatctttg ggatgcagca aaagcagtcc taagggggaa atacatcgca 900 atacaagcat ccattcaaaa actggaaaga actcaaatac aaaagctaac cttacacata 960 aaggagctag agaaaaaaca acaaatagat cctacaccca ggagaagaag ggagttaata 1020 aagattcgag cagaactcac gaaatcgaga ccagaagaac tgtggaacag atcaacagaa 1080 ccaggagttg gttctttgaa agaattaata agatag 1116 // ID NC006583_33; SV 1; special; RNA; MAM; 459 BP. XX AC NC006583_33; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_33; NC006583_33. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..459 FT /organism="Canis familiaris" FT CDS 1..459 FT /protein_id="NC006583_33" FT /db_xref="trGEN:NC006583_33" FT /translation="MGPRLYGHKAGNNMQWKKDSVFNKWCWENWTATCRRMKL FT GHSLMPDTKIHSKWFKDLNVKQEFIKILEKNTGSNLFDLGHSNFLQDTSMKAK FT ETAAKMNSWDFIKIKSFCTAKQTVNKIKRQPTEWEKIFANDISEKGLVPKVYK FT DLTKLNT" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '+' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..459 FT /number=1 FT /note="SINGLE EXON; p-value: 0.463." FT CONTIG join(NC_006583:3591413...3591871 FT join(NC_006583:3591413...3591871) XX SQ Sequence 459 BP; 187 A; 95 C; 88 G; 89 T; other; atgggccctc gactctatgg tcacaaagca ggaaacaata tgcaatggaa gaaggacagt 60 gtcttcaaca aatggtgctg ggaaaactgg acagccacgt gtagaagaat gaaactaggc 120 cattctctta tgccagacac aaagatacac tcaaaatggt tcaaagatct aaatgtgaaa 180 caagaattca tcaaaatcct agagaagaac acaggtagca acctcttcga ccttggtcac 240 agcaacttct tgcaagacac atctatgaag gcaaaggaaa cagcagcaaa aatgaactct 300 tgggacttca tcaagataaa aagcttctgc acagcaaagc aaacagtcaa caaaattaaa 360 agacaaccta cagaatggga gaagatattt gcaaatgaca tatcagaaaa agggctagta 420 cccaaggtct ataaagacct tactaaactt aacacctaa 459 // ID NC006583_34; SV 1; special; RNA; MAM; 213 BP. XX AC NC006583_34; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_34; NC006583_34. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..213 FT /organism="Canis familiaris" FT CDS 1..213 FT /protein_id="NC006583_34" FT /db_xref="trGEN:NC006583_34" FT /translation="MMRAHSAGYSSSIGAIIEDELDPWHRSSTVQTVSGTRPS FT PISLRPDTVEESGWSQKATGELEDPSLRPTR" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '-' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..213 FT /number=1 FT /note="SINGLE EXON; p-value: 0.287." FT CONTIG join(NC_006583:3599148...3598936 FT join(NC_006583:3599148...3598936) XX SQ Sequence 213 BP; 54 A; 59 C; 62 G; 38 T; other; atgatgaggg ctcacagtgc tgggtacagt agcagcattg gtgccatcat cgaagatgag 60 ctggacccgt ggcatcgctc cagcacagtg cagacggtgt ccgggactcg tccttcacct 120 atatcactga gaccagacac agtggaggag tcaggctggt cccaaaaagc caccggggag 180 ctggaagacc ctagtctacg tcccaccaga taa 213 // ID NC006583_35; SV 1; special; RNA; MAM; 3405 BP. XX AC NC006583_35; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_35; NC006583_35. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..3405 FT /organism="Canis familiaris" FT CDS 1..3405 FT /protein_id="NC006583_35" FT /db_xref="trGEN:NC006583_35" FT /translation="MFQIPVENLDNIRKVRKKVKGILVDIGLDSCKELLKDLK FT GFDPGEKYFFNTSWGDISLWEPSGKKVRYRTKPYCCSLCKYSTKVLTSFKNHL FT HRYHEDEIDQELVIPCPNCVFSSQPKTVGRHFRMFHAPVRKVQNYTVNILGET FT KSRSDVISFTCLKCNFSNTLYYSMKKHVLVAHFHYLINSYFGLRTEEMGEQPK FT TEDSLSTEKMPPSDKYYCKKCNANASSQDALMYHILTSDIHRDLENKLRSVIS FT EHIKKPGFLKQMHIAPKPAAPLAAPPNSSAPGITATSPCFRLALPQNGQSQTM FT VQPVTVASGTSGSLTHSPPAVVQSHVTLVSSPLPPSAPQPVFLSHGVPLTQSA FT NPPVLPLSQPVGPINKSVGTGVLPLNQTIRPGALPLSQPVGPGVLSVSRPAGP FT GVLPVSPSVTPGVLQAVSPGVISVSRTVPSGVLPAGQMTPAGVIPSGQTATSG FT VLPAGQVVQSGVLPIGQTAPSGVLPTGLTVPSRVLPPGQTVPLRVLPAGQVVA FT PGLLSPTQSVSSGVLPVNQGINSGVLQLSQPVMSGVLPVGQPVRPGVLQLNQS FT VSTNILPASQPVRPGASQNTTFLTSGSILRQLIPTGKQVNGIPTYTLAPVSVT FT LPVPPGGMAAVPPSQMPIQLLPSGPAAQMASSVASMPSPPVLVSATQSVFVQA FT SPSVVEANQALKQAKQWKTCPVCNELFPSNVYQVHMEVAHKHSESKSAEKLEP FT EKLAACAPFLKWMREKTVRCLSCKCLVSEEELIHHLLMHGLGCLFCPCTFHDI FT KGLSEHSRTMHRGKKKLPVDYSNKGFQLDVDANGNLMFPHLDFITILPKEELG FT EREVYLAILAGIHSKSLVPVYIKVRPQGEGASGSPGKQALTCPFCFGTFVTTE FT AYEVHLKERHHITPTVHTILKSPAFKCIHCCGVYTGNMTLAAIAIHLLRCRSA FT PKDSSSDLQIQPNFIENSEVLLLNGEVVHDTSFSVKRKLPDGHFGTEDQRDAE FT ERPLVISSDAALAPEKVASVVPFKRQRNEIRTEGGPLVNDDALQILALNPKKY FT EDRSYEEKKQFLRDYFHKRPYPSKKEIELLSSLLWVWKIDVASFFGKRRYICM FT KAIKNHKPSVLLGFDMSELKNVKHRLNFEYEPQNL" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '-' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..108 FT /number=1 FT /note="FIRST EXON; p-value: 0.950." FT exon 109..198 FT /number=2 FT /note="INTERNAL EXON; p-value: 0.257." FT exon 199..3405 FT /number=3 FT /note="LAST EXON; p-value: 0.282." FT CONTIG join(NC_006583:3624663...3624556, 3609270...3609181, FT 3604987...3601781) XX SQ Sequence 3405 BP; 846 A; 875 C; 810 G; 874 T; other; atgtttcaaa ttcctgtgga aaatcttgac aacatcagga aggtacgaaa aaaggtgaaa 60 ggcattcttg tggatattgg gcttgacagc tgcaaggaat tgctgaagga ccttaaaggc 120 tttgacccag gagagaagta cttttttaac acatcgtggg gagatatttc tctctgggaa 180 ccttctggaa agaaagtgag atatcgaaca aagccatact gttgtagcct ctgtaaatac 240 tctacaaaag tgcttacttc attcaaaaat catttacatc gttaccatga agacgaaatt 300 gatcaggagc tggtgatccc ttgcccaaac tgtgtgtttt cttctcaacc caaaactgtg 360 ggaaggcact tcagaatgtt tcatgcacct gttcggaaag tccagaacta cacagtaaat 420 attttaggtg aaacgaaatc taggagtgat gtgataagtt ttacatgttt aaaatgtaac 480 ttttcaaaca ctttgtacta cagcatgaag aagcatgtgc tggtagccca ttttcactac 540 ttaattaact cctactttgg cctgcgaact gaggaaatgg gtgagcaacc caaaactgag 600 gatagccttt ctactgagaa gatgccacca tctgacaagt attattgtaa aaagtgcaat 660 gccaatgcca gcagccagga tgctttaatg tatcatattt tgacatcaga catacacagg 720 gatttggaga ataaacttag gtccgtgatt tcagaacata ttaagaaacc tggatttttg 780 aagcaaatgc acattgctcc aaaaccagca gcgcctttgg ctgcaccacc aaacagcagc 840 gctccaggca tcacagccac atccccttgc tttcgtcttg ccttgccaca gaatggtcag 900 agccagacca tggtccagcc agtgactgtg gcctcaggca catctggaag cctcacgcac 960 tctccgcctg ctgtggtgca gtcccacgtg actctagtct ccagtcctct ccctccctct 1020 gctccccagc ctgtctttct ttctcatgga gtcccactta ctcagtcagc aaatcctcct 1080 gtgttgccct tgagtcagcc agttggacct ataaataagt ctgttggaac tggtgtcctc 1140 cctctaaacc agaccatccg ccctggagct ttacccctta gccagcctgt tgggcctggc 1200 gttctttcag tcagcagacc tgctgggcct ggcgtccttc ctgtcagtcc ctcggtcacc 1260 cctggggttc ttcaggccgt ctcaccaggg gtcatttctg tgagtaggac tgtcccgtca 1320 ggggtccttc ctgcaggcca gatgacccct gctggggtta tcccttcagg acagacggcg 1380 acttctgggg ttcttcctgc tggccaggtg gtccagtcag gggttctccc cattggccaa 1440 acggccccat caggggttct ccccactggg ctgacagtcc cgtcccgggt tctccctcct 1500 ggccagacgg taccactgag ggtgctgcct gcaggccagg tggtcgctcc tgggctcctt 1560 tctcccaccc agtcagtatc atcaggtgtc ctccctgtga accagggtat taattctggt 1620 gttcttcagc ttagccagcc tgtcatgtca ggagtgctcc ccgtaggcca gccagttagg 1680 cctggggtcc tacaacttaa tcagtctgtg agcaccaaca tcctgcctgc aagtcagcca 1740 gttaggcctg gtgcttctca gaacaccacc ttcctcacgt cgggctctat tctcagacag 1800 ctcatcccta cagggaagca ggtgaacggg attcccacgt atacccttgc ccctgtgtct 1860 gtcactttgc ctgtgcctcc gggtggtatg gcagctgtcc ctccctccca gatgcccatc 1920 cagctcctgc cttcgggccc agctgcacag atggccagtt ctgtggccag catgccctcc 1980 cctccggtgc tcgtcagtgc cactcagagt gtgtttgttc aggcctctcc gtctgtggta 2040 gaggcgaacc aggcactcaa acaagcgaag caatggaaaa cctgtccagt ttgcaatgag 2100 ctcttccctt ccaacgtcta ccaggttcat atggaagtgg ctcataagca cagtgagtcc 2160 aaatctgctg aaaaactgga gcctgaaaag ctggcagcat gtgcaccatt tttaaagtgg 2220 atgagagaga aaacagttcg gtgtctctct tgtaaatgct tagtgtccga ggaagagctc 2280 atccatcact tgctaatgca cggcctgggg tgcctgttct gtccgtgcac tttccatgac 2340 attaaaggtc tttcagagca cagcaggact atgcaccggg gaaagaagaa gttacctgtg 2400 gactatagta acaaaggttt ccagttggat gtcgatgcca atggcaacct gatgtttccc 2460 catcttgatt tcattaccat tctgccaaag gaagagcttg gggagcggga ggtctatttg 2520 gcaatactgg ctgggatcca ctccaagtcc ctggtccccg tgtatattaa agtgagaccc 2580 cagggagagg gtgcctccgg gagccctggc aaacaagcac tgacttgccc cttttgtttt 2640 ggcaccttcg tgacgactga ggcttatgag gttcatttga aggagaggca ccacatcacg 2700 ccaacggtcc acaccattct gaaatcccca gcgttcaaat gcatccactg ctgtggagtc 2760 tacactggca acatgaccct ggcagccatt gccatacacc tgctgcgctg cagaagtgct 2820 ccaaaggaca gcagctcaga cctccagatc cagcctaatt ttattgagaa cagcgaagtg 2880 ctcttactga atggtgaggt ggtccatgac actagttttt ctgtaaagag aaagttgccc 2940 gatggccact tcgggacaga agaccagagg gatgcagagg agcggcctct tgttattagc 3000 agtgatgcag ccctggctcc tgaaaaggtg gcaagtgtgg tgccttttaa aagacagagg 3060 aatgaaatca ggacagaggg ggggccgctg gttaatgatg atgctcttca gattttagca 3120 ttaaacccta aaaaatatga agaccgttct tatgaagaga aaaagcaatt tcttagagat 3180 tatttccaca agagaccata tcctagtaaa aaggaaatag aacttctttc ttcactcttg 3240 tgggtgtgga aaatcgatgt ggcttcattt tttgggaaaa gaagatatat ttgcatgaaa 3300 gcaataaaaa atcacaagcc ttctgtactt ttaggctttg atatgtctga acttaaaaat 3360 gttaaacaca ggttgaactt tgagtatgag ccacaaaact tgtaa 3405 // ID NC006583_36; SV 1; special; RNA; MAM; 1311 BP. XX AC NC006583_36; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_36; NC006583_36. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..1311 FT /organism="Canis familiaris" FT CDS 1..1311 FT /protein_id="NC006583_36" FT /db_xref="trGEN:NC006583_36" FT /translation="MKLDHSLAPYTKINSKWMKDLNVRQDSINILEENTGNTL FT FKLGHSNFLQDTSRKAKETKAKMNYWDFIKIRSFCTAKDTVNKTKRQPTEWEK FT IFANDISDKGLVSKIYKELIKLNTKETNSPIMKWAKDMKRNLTEEDIDMANMH FT MRKCSASLAIREIQIKTTMRYHLTPVRMGKINKAGNNKCWRGCGEKGTLLHCW FT WECELVQPLWKTVWRFLKQLKIYLPYDPAIALLGIYPKDTNAMKRRDTCTPMF FT LAAMATIAKLWKEPRCPTKDEWIKKMWFMYTMEYYSAIRNDKYPPFASTWMEL FT EGIMLSEPLWKTVWRFLKELKIDLPYDSAIALLGIYPKDTNAMKCWDTCTPMF FT IAAMSTIAKLWKEPRCPSKDEWIKKMWFMYTMEYYSAIRNDKYPPFASTWMEL FT EGIMLSEISQSEKDDIIWSHSFGEYK" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '+' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..933 FT /number=1 FT /note="FIRST EXON; p-value: 0.216." FT exon 934..1311 FT /number=2 FT /note="LAST EXON; p-value: 0.374." FT CONTIG join(NC_006583:3628156...3629088, FT 3629658...3630035) XX SQ Sequence 1311 BP; 491 A; 259 C; 281 G; 280 T; other; atgaaactag accactctct tgcaccatac acaaagataa actcaaaatg gatgaaagat 60 ctaaatgtga gacaagattc catcaatatc ctagaggaga acacaggcaa cacccttttt 120 aaactcggcc acagtaactt cttgcaagat acatccagga aagcaaaaga aacaaaagca 180 aaaatgaact attgggactt catcaagata agaagctttt gcacagcaaa ggatacagtc 240 aacaaaacta aaagacaacc tacagaatgg gagaagatat ttgcaaatga catatcagat 300 aaagggctag tttccaagat ctataaagaa cttatcaaac tcaacaccaa agaaacaaac 360 agtccaatca tgaaatgggc aaaagacatg aagagaaatc tcacagagga agacatagac 420 atggccaaca tgcatatgag aaaatgctct gcatcacttg ccatcaggga aatacaaatc 480 aaaactacaa tgagatacca cctcacacca gtgagaatgg ggaaaattaa caaggcagga 540 aacaacaaat gttggagagg atgcggagaa aagggaaccc tcctacactg ttggtgggaa 600 tgtgaactgg tgcagccact ctggaaaact gtgtggaggt tcctcaaaca gttaaaaata 660 tacctgccct acgacccagc aattgcactg ttggggattt accccaaaga tacaaatgca 720 atgaaacgcc gggacacctg caccccgatg tttctagcag caatggccac gatagccaaa 780 ctgtggaagg agcctcggtg tccaacgaaa gatgaatgga taaagaagat gtggtttatg 840 tatacaatgg aatattactc agctattaga aatgacaaat acccaccatt tgcttcaacg 900 tggatggaac tggagggtat tatgctgagt gaaccactct ggaaaactgt gtggaggttc 960 ctcaaagagt taaaaataga cctgccctac gactcagcaa ttgcactgtt ggggatttac 1020 cccaaagata caaatgcaat gaaatgctgg gacacctgca ccccgatgtt tatagcagca 1080 atgtccacaa tagccaaact gtggaaggag cctcggtgtc catcgaaaga tgaatggata 1140 aagaagatgt ggtttatgta tacaatggaa tattactcag ctattagaaa tgacaaatac 1200 ccaccatttg cttcaacgtg gatggaactg gagggtatta tgctgagtga aataagtcaa 1260 tcggagaagg acgacattat atggtctcat tcatttgggg aatataaata a 1311 // ID NC006583_37; SV 1; special; RNA; MAM; 291 BP. XX AC NC006583_37; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_37; NC006583_37. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..291 FT /organism="Canis familiaris" FT CDS 1..291 FT /protein_id="NC006583_37" FT /db_xref="trGEN:NC006583_37" FT /translation="MGRKVLTASRGPEGPAVRGGALGHGRDPRGGRARSAGIS FT RGGPGYRAAGGVTVECRPHWRVQRPRTLTHVPHPGCLTVLGPVYTATGRPQLG FT AAGL" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '-' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..171 FT /number=1 FT /note="FIRST EXON; p-value: 0.374." FT exon 172..291 FT /number=2 FT /note="LAST EXON; p-value: 0.227." FT CONTIG join(NC_006583:3634819...3634649, FT 3634527...3634408) XX SQ Sequence 291 BP; 39 A; 94 C; 119 G; 39 T; other; atgggacgga aggtgctcac agcctcccga ggccccgagg ggccggcagt gcggggaggg 60 gctctggggc acggacgcga cccccggggc ggcagggcac ggagtgcagg gatatcccgc 120 ggaggccccg gttaccgggc tgcgggcggg gtgacggtcg agtgccgtcc gcattggcgg 180 gtgcagcggc cccggaccct gacccatgtt ccgcaccccg gctgtctcac cgtgttaggg 240 cctgtctaca cggccactgg gaggccgcag ctcggtgccg caggattgtg a 291 // ID NC006583_38; SV 1; special; RNA; MAM; 528 BP. XX AC NC006583_38; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_38; NC006583_38. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..528 FT /organism="Canis familiaris" FT CDS 1..528 FT /protein_id="NC006583_38" FT /db_xref="trGEN:NC006583_38" FT /translation="MSVYSRAGFSSRIEVPKCIGFPHCQVIGFGTGHFFYLEH FT FSISLFTWVHFQYRHHFPGQLVPRFAWSRSQSKGFENKKEVLKGIQSHTKKIC FT TSPTFQRSKTLCLRSQPEYPGKSILRRIKLDHYAIKSLQTTESAKKKIEDTTL FT MLIADVKANKHQIRQTVKKLYDIDWPRSTA" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '-' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..82 FT /number=1 FT /note="FIRST EXON; p-value: 0.122." FT exon 83..198 FT /number=2 FT /note="INTERNAL EXON; p-value: 0.596." FT exon 199..528 FT /number=3 FT /note="LAST EXON; p-value: 0.793." FT CONTIG join(NC_006583:3646007...3645926, 3643075...3642960, FT 3642619...3642290) XX SQ Sequence 528 BP; 159 A; 136 C; 114 G; 119 T; other; atgtctgtgt acagcagggc aggatttagc agcagaattg aagtccctaa atgcataggc 60 tttccccatt gccaggtcat aggctttggg acaggccatt tcttctacct ggaacacttt 120 tctatctctc tcttcacctg ggtacatttt cagtatagac atcactttcc cggccagctc 180 gttccaaggt ttgcctggag ccgaagccaa agcaaaggct ttgaaaacaa gaaggaggtg 240 ctgaaaggca tccaaagtca cactaagaag atctgcacat cacctacatt ccaacgatct 300 aagaccctgt gtctccgaag ccagcccgaa taccctggaa agagcatcct taggagaatc 360 aagcttgacc actatgccat caagagcctc cagactactg agtcagccaa gaagaagata 420 gaagacacca cacttatgct cattgcggat gtcaaggcca ataagcacca gatcagacag 480 actgtgaaga aactctacga tattgattgg ccaaggtcaa cagcttga 528 // ID NC006583_39; SV 1; special; RNA; MAM; 2112 BP. XX AC NC006583_39; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_39; NC006583_39. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..2112 FT /organism="Canis familiaris" FT CDS 1..2112 FT /protein_id="NC006583_39" FT /db_xref="trGEN:NC006583_39" FT /translation="MGKINKTGNNKCWRGCGERGTLLHCWWECELVQPLWKTV FT WRFIKELKIDLPYDPATALLEIYPKDTDAVKCRDTCTPMFIAAMATIAKLWKE FT PQCPTKDEWIKKMWSMYAMEYSSAIRNNKYPPFASTWMELNVTLNVNGLNDPI FT KRRRVSDWIKKQDPSICCLQETHFRQKDTYSLKIKGWRTIYHSNGPQKKAGVA FT ILISDKLKFTPKTVVRDEEGHYIILKGSIKQEDLTILNIYAPNPGTTKYINQL FT LTKVKKYLDNNTLILGDFNLALSILDRSSKHNISKETRALNDTLDQMDFTDIY FT RTLHPNSTEYTFFSNAHGAFSRINHILGHKSGLNLYQKIGIVPCIFSDHNALK FT LELNHNKKFGRTSNTWRLRTILLKDERVNQEIKEVLKRFMETNENEDTTVQNL FT WDAAKAVLRGKYIAIEASIQKLERTQIQKLTLHIKELEKKQQIDPTPRRRREL FT IKIRAELNEIETRRTVEQINRTRSCLIKKKREKTQINKIMNEKGEITTNTKEI FT QTILKTYYEQLYTNKLGNLEEMDAFLESHKLPKLEQEEIENLNRPITREETEA FT VIKNLPRHKSPGPDGFPGEFYQTFKEETIPILLKLFGKIERDGVLPNSFYEAS FT ITLIPKPDKDPSKKENYRPISLMNMDAKILNKILANRIQQYTKKIIHHDQVGF FT IPGTHGWFNTRKTINVIHISAREKPRTI" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '+' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..400 FT /number=1 FT /note="FIRST EXON; p-value: 0.011." FT exon 401..1463 FT /number=2 FT /note="INTERNAL EXON; p-value: 0.024." FT exon 1464..2112 FT /number=3 FT /note="LAST EXON; p-value: 0.590." FT CONTIG join(NC_006583:3656773...3657172, 3665439...3666501, FT 3666543...3667191) XX SQ Sequence 2112 BP; 831 A; 432 C; 413 G; 436 T; other; atggggaaaa ttaacaagac aggaaacaac aaatgttgga gaggatgtgg agaaagggga 60 accctcttac actgttggtg ggaatgtgaa ctggtgcagc cactctggaa aactgtgtgg 120 aggttcatca aagagttaaa aatagacctg ccctacgacc cagcaactgc actgctggag 180 atttacccca aagatacaga tgcagtgaaa tgccgggaca cctgcacccc gatgtttata 240 gcagcaatgg ccacgatagc caaactgtgg aaggagcctc agtgtccaac gaaagatgaa 300 tggataaaga agatgtggtc tatgtatgca atggaatatt cctcagccat tagaaacaac 360 aaatacccac catttgcttc gacgtggatg gaactgaacg taactctgaa tgtgaacggg 420 cttaatgacc ccatcaaaag gcgcagggtt tcagactgga taaaaaagca ggacccatct 480 atttgctgtc tacaagagac tcattttaga cagaaggaca cctacagcct gaaaataaaa 540 ggttggagaa ccatttacca ttcgaatggt cctcaaaaga aagcaggggt agccatcctt 600 atatcagata aactaaaatt taccccgaag actgtagtaa gagatgaaga gggacactat 660 atcatactta aaggatctat caaacaagag gacttaacaa tcctcaatat atatgccccg 720 aatccgggaa ctaccaaata tataaatcaa ttattaacca aagtgaagaa atacttagat 780 aataatacac ttatacttgg tgacttcaat ctagctcttt ctatacttga taggtcttct 840 aagcacaaca tctccaaaga aacgagagct ttaaatgata cactggacca gatggatttc 900 acagatatct acagaacttt acatccaaac tcaactgaat acacattctt ctcaaatgca 960 catggagctt tctccagaat aaaccacata ctgggtcaca aatcgggtct gaacctatac 1020 caaaagattg ggatcgtccc ctgcatattc tcagaccata atgccttgaa attagaacta 1080 aatcacaaca agaagtttgg aaggacctca aacacgtgga ggttaaggac catcctgcta 1140 aaagatgaaa gggtcaacca ggaaattaag gaagtattaa aaagattcat ggaaactaat 1200 gagaatgaag atacaaccgt tcaaaatctt tgggatgcag caaaagcagt cctaaggggg 1260 aaatacatcg caatagaagc atccattcaa aaactggaaa gaactcaaat acaaaagcta 1320 accttacaca taaaggagct agagaaaaaa cagcaaatag atcctacacc caggagaaga 1380 agagagttaa taaagattcg agcagaactc aatgaaattg agaccagaag aactgtggaa 1440 cagatcaaca gaaccaggag ttgccttatt aaaaagaaga gagagaagac tcaaattaat 1500 aaaatcatga atgagaaagg agagatcact accaacacca aggaaataca aacgatttta 1560 aaaacatatt atgaacagct atacaccaat aaattaggca atctagaaga aatggatgca 1620 ttcctggaaa gccacaaact accaaaactg gaacaggaag aaatagaaaa cctgaacagg 1680 ccaataacca gggaggaaac tgaagcagtc atcaaaaacc tcccaagaca caagagtcca 1740 gggccagatg gcttcccagg ggaattctat caaacgttta aagaagaaac catacctatc 1800 ctactaaagc tgtttggaaa gatagaaaga gatggagtac ttccaaattc gttctatgag 1860 gccagcatca ccttaattcc aaaaccagac aaagacccct ccaaaaagga gaattacaga 1920 ccaatatccc tgatgaacat ggatgcaaaa attctcaaca agatactggc caataggatc 1980 caacagtaca ctaagaaaat tattcaccat gaccaagtag gatttatccc cgggacacac 2040 ggctggttca acacccgtaa aacaatcaat gtgattcaca tatcagcaag agaaaaacca 2100 agaaccatat ga 2112 // ID NC006583_40; SV 1; special; RNA; MAM; 681 BP. XX AC NC006583_40; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_40; NC006583_40. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..681 FT /organism="Canis familiaris" FT CDS 1..681 FT /protein_id="NC006583_40" FT /db_xref="trGEN:NC006583_40" FT /translation="MKWAKDMKRNLTEEDIDMANTHMRKCSASLAIREIQIKT FT TMRYHLTPVRMGKINKAGKINKCWRGCREKGTLLHCWWECELVQPLWKTAWRF FT LKELKIDLPYDPAIALLGIYPKDSDAMKRRDTCTPMFIAAMSTIAKLWKEPRC FT PSKDEWIKKMWFMYTMEYSSAIRNDKHPPFASTWMDLEGIMLSEVDTPTCGRR FT RTGPGLHRSGSASLPGPSLQLRCKADFK" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '+' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..567 FT /number=1 FT /note="FIRST EXON; p-value: 0.342." FT exon 568..681 FT /number=2 FT /note="LAST EXON; p-value: 0.389." FT CONTIG join(NC_006583:3668809...3669375, FT 3669891...3670004) XX SQ Sequence 681 BP; 220 A; 163 C; 167 G; 131 T; other; atgaaatggg caaaagacat gaagagaaat ctcacagagg aagacataga catggccaac 60 acgcacatga gaaaatgctc tgcatcactt gccatcaggg aaatacaaat caaaaccaca 120 atgagatacc acctcacccc agtgagaatg ggaaaaatta acaaggcagg aaaaattaac 180 aaatgttgga gaggatgcag agaaaaggga accctcttac actgttggtg ggaatgtgaa 240 ctggtgcagc cactctggaa aactgcgtgg aggttcctca aagagttaaa aatagatctg 300 ccctacgacc cagcaattgc actgttgggg atttacccca aagattcaga tgcaatgaaa 360 cgccgggaca cctgcacccc gatgtttata gcagcaatgt ccacaatagc caaactgtgg 420 aaggagcctc ggtgtccatc gaaagatgaa tggataaaga agatgtggtt tatgtataca 480 atggaatatt cctcagccat tagaaatgac aaacacccac catttgcttc aacgtggatg 540 gacctggagg gtattatgct gagtgaagtg gacaccccta cctgcggccg aaggcgcaca 600 ggccccgggc tgcatcgcag cgggtcggct tctctgcccg gcccctcact ccagctccgc 660 tgcaaagccg acttcaagta a 681 // ID NC006583_41; SV 1; special; RNA; MAM; 462 BP. XX AC NC006583_41; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_41; NC006583_41. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..462 FT /organism="Canis familiaris" FT CDS 1..462 FT /protein_id="NC006583_41" FT /db_xref="trGEN:NC006583_41" FT /translation="MRVKVLTQPRDPSLGGPPPLHGDSRFCARKPMDLTLGGS FT SSTWCAVLHDLISHQMSGEGHRVGGVDAVTKSRPQLKLAAGKVSMRLFTYANV FT TRQRARKGKAHPKVLEDLQECTARLSGTTSLWTHMHLRSCEEACAHLATCFHM FT WTDPEAHS" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '+' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..42 FT /number=1 FT /note="FIRST EXON; p-value: 0.508." FT exon 43..164 FT /number=2 FT /note="INTERNAL EXON; p-value: 0.379." FT exon 165..315 FT /number=3 FT /note="INTERNAL EXON; p-value: 0.095." FT exon 316..462 FT /number=4 FT /note="LAST EXON; p-value: 0.011." FT CONTIG join(NC_006583:3672274...3672315, 3673338...3673459, FT 3674638...3674788, 3678265...3678411) XX SQ Sequence 462 BP; 108 A; 138 C; 131 G; 85 T; other; atgcgggtca aggtcctgac ccagccacga gacccctccc tgggcggccc acccccactc 60 cacggggaca gcaggttctg cgctcggaag cccatggacc tcaccctggg cggctcttca 120 tctacgtggt gtgctgttct tcatgactta ataagccacc agatgtctgg tgaaggacac 180 agggtagggg gggtggatgc agtgaccaag agtcggccac agttaaagct ggctgctggg 240 aaggtgtcca tgcgtctctt tacttatgca aacgttactc gacaaagagc aagaaaaggt 300 aaagcacacc cgaaggtcct agaagacctg caagagtgca cggcccggct ctcaggcacc 360 acaagcctct ggacacacat gcatctgcgg agctgtgagg aagcctgtgc ccaccttgcc 420 acctgtttcc acatgtggac agaccctgag gcacacagct ga 462 // ID NC006583_42; SV 1; special; RNA; MAM; 1206 BP. XX AC NC006583_42; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_42; NC006583_42. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..1206 FT /organism="Canis familiaris" FT CDS 1..1206 FT /protein_id="NC006583_42" FT /db_xref="trGEN:NC006583_42" FT /translation="MEMYKPSRLDFLTKTTAKKPRRDDHVRLRALNGLLYKAL FT MDLLCTPEVSQEICDLDVQLSKAPSDGPTDPKERAANSVHSGQRQFGSGGEEV FT FGGGKCRQCSEHRRQVDRLLASADFGAPDKKEDSVQDDVRCPDVELLVAVAVA FT SLHPLLLCGPCPGAQTCSSLWRVPRPALQQFLAPPQVFLNAYYTLFWHEGTYM FT NRTDEPLELKGILLGEASDLEQHTSTWRSPRALDAPTQQGTLASTTCSSLCGI FT DHEALNKQIMEYKKQRGQGCRTVSPEVSQLTAGLASQTRAGKYHQCQDAENSI FT SRVSMVTCAPVRHSKEACDVAFRGGQLPHVRTVSSAVLVCPPCTCQCSPCGRG FT TSRMRETAVGAPSMLLSGGTCVVLADPETWKVRVTGVFPEERTC" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '-' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..183 FT /number=1 FT /note="FIRST EXON; p-value: 0.735." FT exon 184..268 FT /number=2 FT /note="INTERNAL EXON; p-value: 0.798." FT exon 269..321 FT /number=3 FT /note="INTERNAL EXON; p-value: 0.325." FT exon 322..395 FT /number=4 FT /note="INTERNAL EXON; p-value: 0.503." FT exon 396..544 FT /number=5 FT /note="INTERNAL EXON; p-value: 0.781." FT exon 545..649 FT /number=6 FT /note="INTERNAL EXON; p-value: 0.727." FT exon 650..677 FT /number=7 FT /note="INTERNAL EXON; p-value: 0.456." FT exon 678..879 FT /number=8 FT /note="INTERNAL EXON; p-value: 0.434." FT exon 880..1206 FT /number=9 FT /note="LAST EXON; p-value: 0.671." FT CONTIG join(NC_006583:3703208...3703026, 3699461...3699377, FT 3697349...3697297, 3694471...3694398, 3694175...3694027, FT 3693926...3693822, 3693238...3693211, 3693144...3692943, FT 3692331...3692005) XX SQ Sequence 1206 BP; 279 A; 316 C; 375 G; 236 T; other; atggagatgt acaagccgtc ccggttggac ttcctaacga agaccactgc aaagaaaccc 60 aggagggacg accatgtgcg cctgcgggca ctgaacggcc tcctctacaa agcactgatg 120 gacctgctgt gcacccctga agtgagccag gagatctgcg acctggacgt gcagctctcc 180 aaggcacctt ctgatggccc aacagatcct aaggaacgtg ccgccaatag tgttcattca 240 ggacagaggc agtttggctc tggcggagaa gaagtctttg gaggagggaa gtgcaggcag 300 tgctcagagc atcgcaggca ggttgaccgg ttactggcca gtgctgattt tggagccccg 360 gacaagaaag aagactctgt gcaagacgat gtcagatgtc cagatgtgga gttgctggtt 420 gccgtggcgg tagcatcgtt gcatcctctg ctgctgtgtg ggccctgccc tggggcccag 480 acctgcagca gcctgtggcg ggtcccacgg ccagccctgc agcagttcct agcacctcca 540 caagttttct tgaatgcata ctataccctg ttctggcatg agggtactta catgaacaga 600 acagatgagc ctttggagct caaaggcatt ttgctgggag aggccagtga cttggagcag 660 cacacaagca catggaggag tcccagggcc ctggacgctc ctacacagca aggcactctg 720 gcctccacta cgtgctcaag tctgtgcggc attgatcacg aggcgctcaa caaacaaatc 780 atggagtaca agaagcagag agggcaaggc tgtaggaccg tgagccctga ggtgtcgcag 840 ctgacagctg gtctggcatc acagacgaga gcaggaaagt atcatcagtg tcaagatgct 900 gaaaacagca tcagcagagt ttccatggtc acatgtgcac cagtgagaca cagcaaggaa 960 gcttgtgacg tggcctttag gggaggacag cttccacatg tgcgaacagt cagctctgcg 1020 gtgctggtat gccccccgtg cacctgccag tgtagcccct gtggaagggg cacctccagg 1080 atgcgggaga ctgccgtagg agctccaagc atgttgctgt ctgggggcac gtgtgtggtc 1140 cttgctgacc cggagacctg gaaggtgcgg gtaactggag tgtttcccga ggagcgcacg 1200 tgctga 1206 // ID NC006583_43; SV 1; special; RNA; MAM; 819 BP. XX AC NC006583_43; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_43; NC006583_43. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..819 FT /organism="Canis familiaris" FT CDS 1..819 FT /protein_id="NC006583_43" FT /db_xref="trGEN:NC006583_43" FT /translation="MKTLNLGGMYDEMRWLTIHKNDVKTKIRNISTWKVKSWE FT LSTPAFYVDSQDTAAVPEKARRPQTHHGPGTTADVDEDGRAWTKPSHTPTYAQ FT GRQNIPERMWVPLQAGIRAGPFVTTDKCGQTPCRHLGMLLIKQSKGPGPAPGT FT PRSWLLLEVTASQPVATAIRILNVKYHRLGSGDGPEKRLCPRRTLVPMCTVIT FT RRVIIAPQSLHRPWCRLSWARPSAGPPPGSGQLEGVPRQWEAAASLSSMAIVG FT WMRVGSCEHLLDGYEPVASMK" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '+' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..60 FT /number=1 FT /note="FIRST EXON; p-value: 0.815." FT exon 61..175 FT /number=2 FT /note="INTERNAL EXON; p-value: 0.919." FT exon 176..235 FT /number=3 FT /note="INTERNAL EXON; p-value: 0.609." FT exon 236..819 FT /number=4 FT /note="LAST EXON; p-value: 0.954." FT CONTIG join(NC_006583:3709151...3709210, 3711485...3711599, FT 3711654...3711713, 3712071...3712654) XX SQ Sequence 819 BP; 207 A; 226 C; 233 G; 153 T; other; atgaagacgc ttaaccttgg agggatgtac gatgagatgc ggtggttgac aatacacaag 60 aatgatgtga aaacaaaaat cagaaatatt tctacatgga aagtaaagtc ctgggaactc 120 agtaccccag ccttctacgt ggactctcag gacaccgcgg ctgtgccgga gaaagccagg 180 cggccccaga cgcaccacgg cccaggtacc actgccgatg ttgatgagga tggcagggcc 240 tggaccaagc ccagccatac acccacatat gctcaaggac gacagaacat tcctgaaagg 300 atgtgggtcc cactgcaagc aggaatacga gcaggtcctt ttgtgaccac agacaaatgt 360 gggcagacac cctgcagaca cctggggatg ctgcttatca aacaaagcaa gggccctggt 420 cctgctccgg gcaccccacg cagctggtta ctcctggagg tcacagcctc ccagccagta 480 gccactgcca tacggatact aaatgtgaaa tatcacaggt tggggtctgg tgatggcccg 540 gagaagagac tttgtcctag aagaaccctg gtccccatgt gcacggtcat caccaggaga 600 gtcatcattg caccccagtc tcttcaccgc ccatggtgca gactgagttg ggcacggccc 660 tcagcaggac ctccgccagg ctctggccag ctggaaggtg ttccacggca gtgggaggcc 720 gctgcaagct tgtcaagcat ggccatcgtt ggctggatgc gcgtgggcag ttgcgagcac 780 ctcttagatg gatatgagcc cgtggcatcc atgaagtga 819 // ID NC006583_44; SV 1; special; RNA; MAM; 480 BP. XX AC NC006583_44; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_44; NC006583_44. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..480 FT /organism="Canis familiaris" FT CDS 1..480 FT /protein_id="NC006583_44" FT /db_xref="trGEN:NC006583_44" FT /translation="MGERDLPGVLVSGLEGPYGICEDHVGDLQKHFNLIIMQE FT FLENKTQFSSYLWGGKLAIEQELLWSLPSLKIIASPGAGLDHLDLKLVANFSV FT KVANSPQVVSSPMADMGMALLLVAARRVVEVKQPLDLLVFQREQMTGTHDRGS FT NIIFYLQATSLFWA" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '-' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..480 FT /number=1 FT /note="SINGLE EXON; p-value: 0.438." FT CONTIG join(NC_006583:3714323...3713844 FT join(NC_006583:3714323...3713844) XX SQ Sequence 480 BP; 119 A; 98 C; 132 G; 131 T; other; atgggggaac gggacttacc tggtgttttg gtgtctggat tggaagggcc ttacggtata 60 tgtgaagatc atgttggaga tctgcagaaa cattttaatc tcattatcat gcaagaattt 120 ttggaaaata agacacaatt cagctcttat ctctggggag gaaagctggc tattgaacag 180 gagctcctgt ggagcctgcc atcgttgaag ataattgcct caccaggagc aggtctagat 240 cacctggacc tgaagcttgt tgccaacttt agtgtgaagg ttgccaattc accacaggtt 300 gtgtccagcc ccatggcaga catgggcatg gccttgctcc tggtggcggc tcgcagggtg 360 gtggaagtta agcagccctt ggacttgctg gttttccaaa gagagcagat gacaggcact 420 catgacagag gcagtaacat aattttttat cttcaagcta caagtctttt ctgggcctga 480 // ID NC006583_45; SV 1; special; RNA; MAM; 666 BP. XX AC NC006583_45; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_45; NC006583_45. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..666 FT /organism="Canis familiaris" FT CDS 1..666 FT /protein_id="NC006583_45" FT /db_xref="trGEN:NC006583_45" FT /translation="MGATPGPPHRGLGLQGVPSVPSLFQGSGGCARRCTRSRP FT EMSYMLPHLHNGWQVDQAILSEEDRVVVIRFGHDWDPTCMKMDEVLYSIAEKR FT LDQPYKGFLDDGARGGISIHTGANMSSVAGSLKDTIRMASLLTGGGCKEPLPR FT TQNGWHTGGKKEQIPGPECGNKHIMIDLGTGNNNKINWAMEDKQEMIDIIETV FT YRGARKGRGLVVSPKDYSTKYRY" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '+' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..86 FT /number=1 FT /note="FIRST EXON; p-value: 0.609." FT exon 87..273 FT /number=2 FT /note="INTERNAL EXON; p-value: 0.536." FT exon 274..350 FT /number=3 FT /note="INTERNAL EXON; p-value: 0.324." FT exon 351..433 FT /number=4 FT /note="INTERNAL EXON; p-value: 0.319." FT exon 434..494 FT /number=5 FT /note="INTERNAL EXON; p-value: 0.420." FT exon 495..666 FT /number=6 FT /note="LAST EXON; p-value: 0.999." FT CONTIG join(NC_006583:3722016...3722101, 3722199...3722385, FT 3729149...3729225, 3729706...3729788, 3733319...3733379, FT 3734346...3734517) XX SQ Sequence 666 BP; 152 A; 183 C; 214 G; 117 T; other; atgggggcga ccccggggcc tccgcaccgg ggactgggtc tgcagggcgt cccctcagtg 60 ccgtccctct tccaggggtc gggggggtgt gcccgcaggt gtacccggag ccgccccgag 120 atgtcgtaca tgctcccaca cctgcacaac ggctggcagg tggatcaggc catcctgtcg 180 gaggaggacc gcgtggtcgt catccgcttt ggacacgact gggaccccac gtgtatgaag 240 atggacgagg tgctgtacag catcgcggag aagagattgg atcagccata taaaggcttt 300 ctggacgatg gggcacgtgg gggcatcagc atccacacag gagccaacat gtcatccgtg 360 gctggttctc taaaggacac catccgaatg gccagtcttc tcactggtgg tggctgcaag 420 gagcctcttc ccaggacaca gaatggctgg cacactggtg gtaagaagga gcagatccct 480 gggcccgagt gcgggaacaa gcacatcatg attgacctgg gtactggtaa caacaacaag 540 atcaactggg ccatggaaga caaacaggaa atgatagaca tcatcgagac tgtgtaccgg 600 ggcgcccgga agggccgcgg cctggttgtg tctccaaagg actactccac gaaatacaga 660 tactga 666 // ID NC006583_46; SV 1; special; RNA; MAM; 2760 BP. XX AC NC006583_46; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_46; NC006583_46. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..2760 FT /organism="Canis familiaris" FT CDS 1..2760 FT /protein_id="NC006583_46" FT /db_xref="trGEN:NC006583_46" FT /translation="MAADIEATTSRRNTRVGSEISHLCLLVYGLEQRPGAPDS FT VLTAVTASIADHRAEAGVLESALIYGDAWNPEQFLRGFGVFNRSQENADPRTY FT HRTQLGDEGKAANRGQGEEHQSGDTHLPSVEEEPTLEAEAMRSLGHRSLRRRG FT RGSPGHGKQKSGWQQLHFWANGLEAGAMSFGGVVPYIPQYRDIRRTQNAEGFS FT TYVCLVLLVANILRILFWFGRHFESPLLWQSIVMILTMLLMLKLCTEVRVTNE FT LNVKRRFFAVPRCCGLGRSAHPRMRDGQRRMHAVPCASGSEMSREQDAGSCLD FT PRKDRALVLAWFWSNFQNRCVCGWFVLHLCKTRTLESAVTPPSAVESGFDHDP FT RTRSALKMVVVDGAPVALHPFALPSPGPLPHPAVLAGSQALPVFGHAADNKDE FT EVKVPPRRLYLDFDPHHFWHWSSFGDYVQCVLAFTGVAGYVTYLSIDSALFVE FT TLGFLAVLTEAMLGVPQLYRNYRHQSTEGMSLRPVPGGKTSTQGSHRCSACGR FT GVKSVLGVDIVADLLHQGPVLVAPVSRWCSCGLAVTPQDGLLLAEWCTPPVLR FT VRPAAGAGGPGHPGAGLCLRPPPPEAGPPCGTPSQCQGPLRHLGKMRMCVSRR FT GASPAAGIPIGLCGSGWAAGGLVPTSVLAHPKDEWSGLHTPWLGCSRFPGVGL FT GSKEGGTENVVLPSEWPKRWVPWCQHVTEGDGGRGLQSVAGALYAPAPVERMS FT RGCPLRVLLLLWPDLASSELPSVQLPHGTQDVAPGGSGSRAVQGILKMLVQTP FT QTSPWEVGPPAGDAGPAEIKRRVPLEAEKCVQRKATWPVEDEGSRGICVASSD FT GTVCTEQLFFHGDSLHVGVTYQQYEKDTVKIHQSRILSFWLRPHPPPALAPEL FT VQPVTPHGPQVVRISRMGLVLPCVDFYFLSDV" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '+' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..35 FT /number=1 FT /note="FIRST EXON; p-value: 0.142." FT exon 36..281 FT /number=2 FT /note="INTERNAL EXON; p-value: 0.378." FT exon 282..384 FT /number=3 FT /note="INTERNAL EXON; p-value: 0.217." FT exon 385..508 FT /number=4 FT /note="INTERNAL EXON; p-value: 0.223." FT exon 509..647 FT /number=5 FT /note="INTERNAL EXON; p-value: 0.001." FT exon 648..781 FT /number=6 FT /note="INTERNAL EXON; p-value: 0.010." FT exon 782..878 FT /number=7 FT /note="INTERNAL EXON; p-value: 0.005." FT exon 879..944 FT /number=8 FT /note="INTERNAL EXON; p-value: 0.529." FT exon 945..1073 FT /number=9 FT /note="INTERNAL EXON; p-value: 0.579." FT exon 1074..1210 FT /number=10 FT /note="INTERNAL EXON; p-value: 0.294." FT exon 1211..1264 FT /number=11 FT /note="INTERNAL EXON; p-value: 0.040." FT exon 1265..1481 FT /number=12 FT /note="INTERNAL EXON; p-value: 0.872." FT exon 1482..1621 FT /number=13 FT /note="INTERNAL EXON; p-value: 0.201." FT exon 1622..2014 FT /number=14 FT /note="INTERNAL EXON; p-value: 0.220." FT exon 2015..2346 FT /number=15 FT /note="INTERNAL EXON; p-value: 0.299." FT exon 2347..2760 FT /number=16 FT /note="LAST EXON; p-value: 0.689." FT CONTIG join(NC_006583:3737722...3737756, 3746242...3746487, FT 3749536...3749638, 3749874...3749997, 3760461...3760599, FT 3766574...3766707, 3767747...3767843, 3768463...3768528, FT 3770856...3770984, 3773250...3773386, 3774450...3774503, FT 3793158...3793374, 3800259...3800398, 3802662...3803054, FT 3803261...3803592, 3804501...3804914) XX SQ Sequence 2760 BP; 525 A; 756 C; 890 G; 589 T; other; atggcagctg acatagaagc aacaactagc cgaagaaata ccagggtcgg tagtgagatc 60 agccacctgt gccttttggt ttatggcttg gaacagaggc ctggggcccc ggattcggtg 120 ctcacagcgg tcactgcatc catcgcagac cacagggcag aggcgggtgt cctagaatct 180 gcactgatct atggagatgc ctggaatcca gagcagttcc tcagggggtt tggggttttt 240 aaccgttctc aggagaatgc agacccacga acgtaccaca ggacgcagct gggggatgaa 300 ggcaaggccg ccaaccgagg ccaaggggaa gagcaccaga gcggggacac ccacttgcca 360 tctgtggaag aggagccaac actggaagca gaagccatga ggagcctggg ccaccgcagc 420 ctgaggagga ggggacgtgg ttccccggga cacgggaaac agaagagcgg ctggcagcag 480 ctccacttct gggccaacgg gctggaagcc ggggccatgt ctttcggagg agtggtgccc 540 tatatccccc agtacaggga catccggagg actcagaatg ctgagggctt ctctacctac 600 gtgtgcctgg tgctcctggt ggctaatatt ttacggatac tcttctggtt tggaaggcat 660 tttgagtcgc cgctcctctg gcagagcata gtcatgatct tgaccatgtt actgatgttg 720 aagctgtgca ctgaagtccg cgtgacaaat gagctgaacg taaaacgccg tttctttgca 780 gtgccaaggt gctgtgggct cggtcgttct gctcacccac ggatgaggga tgggcagagg 840 aggatgcatg ctgtcccctg tgcgtcaggc tctgaaatgt caagagagca ggatgcgggc 900 tcttgcctgg accctcggaa ggaccgcgcc ctggttttgg cctggttttg gagcaacttc 960 cagaaccgct gtgtctgcgg gtggttcgtg ctgcatctct gcaagacgag gactttggaa 1020 agcgccgtaa caccaccatc agctgtggaa agtggatttg atcatgatcc aaggacacgt 1080 tcagcgctga agatggtggt tgtagatggt gcccctgtgg ctctccaccc attcgccctg 1140 cccagtcctg ggcctctgcc acacccggcc gttctggcag gttcccaggc tctgcccgtg 1200 tttgggcatg ctgcagataa taaggacgaa gaagtcaagg tgccccccag gcggttgtat 1260 ctggactttg accctcacca cttctggcac tggagcagct tcggggacta tgtgcaatgt 1320 gtcctggcct tcacgggcgt ggcaggctac gtcacatacc tgtccatcga ctcagccctt 1380 tttgtggaga ccctgggctt cctggctgtg ctgactgaag ccatgctagg tgtccctcag 1440 ctctaccgca actaccgcca ccagtccact gagggaatga gcctcaggcc cgtgcctggt 1500 gggaagacga gcacccaagg gagccaccgc tgctctgcat gcgggagggg ggtgaagtcg 1560 gtgttgggtg ttgacattgt ggccgatctt ttacatcagg gccccgtcct ggtggcccca 1620 gtatcaagat ggtgctcatg tggactagcg gtgacacctc aagacggcct acttcttgct 1680 gaatggtgca cccctccagt tctccgtgtg cggcctgctg caggtgctgg tggacctggc 1740 catcctgggg caggcctatg ccttcgcccg ccgcccccag aagccggccc cccatgtggc 1800 acacccagcc agtgccaagg ccctctgagg catctgggga agatgaggat gtgtgtctct 1860 cgcaggggcg ccagcccggc tgctggtatc ccgattggcc tctgtgggtc cgggtgggct 1920 gctgggggcc tggtgccgac gtctgtgctc gctcacccta aggacgagtg gagtgggctt 1980 cataccccat ggctgggctg cagccgcttc ccaggggtgg ggttggggag caaggaaggt 2040 ggcacagaga acgtggtcct gccctctgaa tggcccaaac ggtgggtgcc ctggtgccag 2100 catgtaaccg aaggtgatgg tggccggggc ctgcagagcg tggctggggc tttatatgca 2160 cctgctcctg tggaaaggat gtcgcgagga tgcccattac gggtgctctt gctcctctgg 2220 ccggacttgg cctcatcaga gctgccttca gtgcagctgc ctcatgggac tcaggacgtg 2280 gccccaggtg gcagtggatc cagggctgtg cagggcatcc tgaagatgct ggtgcagacg 2340 ccacagacca gcccctggga ggtggggcct cctgctggtg acgctgggcc tgcagagatc 2400 aagcgccgag tgcccctgga ggctgagaag tgtgttcaga gaaaggccac gtggcccgtt 2460 gaggacgagg ggagccgagg catctgtgtt gcaagtagcg acggcacggt ctgtactgag 2520 cagctttttt ttcatggaga cagtttacat gtgggggtga catatcaaca atatgaaaaa 2580 gacacggtga agatacacca aagtcgtatt ttaagttttt ggctgcgtcc ccaccctccc 2640 ccagcactgg ccccagagct ggtccagcca gtgacgccgc atggccctca ggtggtgcgc 2700 atctcccgca tgggccttgt cctgccttgt gtggattttt actttctttc tgatgtgtga 2760 // ID NC006583_47; SV 1; special; RNA; MAM; 882 BP. XX AC NC006583_47; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_47; NC006583_47. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..882 FT /organism="Canis familiaris" FT CDS 1..882 FT /protein_id="NC006583_47" FT /db_xref="trGEN:NC006583_47" FT /translation="MASKTLSQALLLPLGLPTLCGSSSTGWRVFPQVPRPLRG FT GDRVRGLVLLRVPAVLTAGGEQVHLPAVAARHHLHPGHPARLRVALVGLVAGG FT AGAVAGGAALLELERAGLGLGLALRLLRALRAPRWGCARSGHGAPLRARPAAP FT LPVRGHGAVRAARAPGHLGTWPSASWAGARRDFSSEPASYWWAVISMTTVGYG FT DTGQAVALSSILSGILLMAFPVTSIFHTFSRSYCELKEQQQRAASPAALREDS FT TRSATATATATATATEGSWPGPGGAGQGGVPVPGVYRTAPRQ" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '-' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..79 FT /number=1 FT /note="FIRST EXON; p-value: 0.021." FT exon 80..882 FT /number=2 FT /note="LAST EXON; p-value: 0.211." FT CONTIG join(NC_006583:3812925...3812847, FT 3808677...3807875) XX SQ Sequence 882 BP; 97 A; 332 C; 308 G; 145 T; other; atggcctcca agacgctgtc ccaggccctc ctcctcccac tgggcctacc caccctctgt 60 ggaagctctt ccacaggctg gcgagtgttc ccccaagtgc cgcggccact tcgtggggga 120 gaccgtgtgc gtggcctggt tctccttcga gttcctgctg tgctcactgc aggcggagag 180 caagtgcacc ttcctgcggt cgccgctcga catcatctac atcctggcca tcctgcccgt 240 ctacgcgtcg cgctcgtggg gttggtggcc gggggcgcgg gcgccgtcgc ggggggcgcg 300 gcgctgctgg agctggagcg cgcggggctg gggctggggc tggcgctgcg gctgctgcgg 360 gcactgcgcg cccctcgctg gggctgcgct cgctcgggtc acggtgcgcc gctgcgagct 420 cggcctgctg ctcctcttcc tgtgcgtggc catggcgctg ttcgcgccgc ccgtgcacct 480 gggcacctgg gcacctggcc gagcgcgagc tgggcgggcg cacgtcgcga cttctccagc 540 gagccggcca gctactggtg ggccgtcatc tccatgacca ccgtgggcta cggcgacacc 600 gggcaggcgg tggcgctcag cagcatcctc agcggcatcc tgctcatggc cttcccggtc 660 acctccatct tccacacctt ctcgcgctcc tactgcgagc tcaaggagca gcagcagcgc 720 gctgccagcc ccgcggccct gcgcgaggac agcacgcgct cagccaccgc caccgccacc 780 gccaccgcca ccgccacgga gggcagctgg ccggggccgg gcggcgcggg tcaaggcggg 840 gtccccgtgc ctggggtgta caggactgcg ccccgccagt ag 882 // ID NC006583_48; SV 1; special; RNA; MAM; 2151 BP. XX AC NC006583_48; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_48; NC006583_48. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..2151 FT /organism="Canis familiaris" FT CDS 1..2151 FT /protein_id="NC006583_48" FT /db_xref="trGEN:NC006583_48" FT /translation="MDRLPGARRCPLARAARVTGGACGRHPGGARAALLLSSH FT GRPDRFSPWVTPAFPVVVSSILCHLKSVYLDDKRHSTEQEAPLSKASVYIVPQ FT LAGNSFPALPPEPSLEEQALCPERGGHPGPWPCALSPRAAGACHHIVGGCRVR FT LAVPSRAWSACGPAEATARSCGCHEFFDRSPCASRATAALALGAGASGASTRA FT PGALLPPPPPAPPRGGGGGGGRGARGRGETRGRGARPAPAGPAGRPALFAGVS FT VAFVAATGRPVPGHHPHIRAEEKPVNGGLQAGRWGGNHWVQLTRGPRAPSLLC FT SEHPHPLLPPSSNGQTQTPSWGRELRSKPQSPSEVAGSAEHTCWGPPITQRHS FT EEGQTSMARKEPEPEALCGLHLQGVGGSEKARTACGYPVSMHPDYCGKNQEAG FT IDSPESAKPRVHVGSGMCLPVEALILVHLALLEGAVSLRTTPGVGSSGGCMQG FT SCKARDLPVHLASPSTSSCTCRNLRAVEITIIHANHIRLCFAHRINLCTCLIT FT MGIGSRLQHSIRQHIPGGAICLLTLHGQREQPMVTAFRLWRLGALTLWLEEEP FT VPSCGLHPAADTLVRPPRVTAQCDGIGGAPWPGHQLVDAVSENKAGEAPWATS FT AAGDCAPQPHSGRAGRGDRVVCSEHDHGRWTPQRCSGSHLCAPWWICSMCKSA FT DMTGAVFRVNVKPLQLRGKLGHHGERLEVLRGNCSARHQPS" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '-' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..143 FT /number=1 FT /note="FIRST EXON; p-value: 0.687." FT exon 144..238 FT /number=2 FT /note="INTERNAL EXON; p-value: 0.138." FT exon 239..330 FT /number=3 FT /note="INTERNAL EXON; p-value: 0.263." FT exon 331..871 FT /number=4 FT /note="INTERNAL EXON; p-value: 0.384." FT exon 872..926 FT /number=5 FT /note="INTERNAL EXON; p-value: 0.365." FT exon 927..1077 FT /number=6 FT /note="INTERNAL EXON; p-value: 0.609." FT exon 1078..1101 FT /number=7 FT /note="INTERNAL EXON; p-value: 0.503." FT exon 1102..1242 FT /number=8 FT /note="INTERNAL EXON; p-value: 0.454." FT exon 1243..1330 FT /number=9 FT /note="INTERNAL EXON; p-value: 0.189." FT exon 1331..1526 FT /number=10 FT /note="INTERNAL EXON; p-value: 0.057." FT exon 1527..1647 FT /number=11 FT /note="INTERNAL EXON; p-value: 0.032." FT exon 1648..2151 FT /number=12 FT /note="LAST EXON; p-value: 0.004." FT CONTIG join(NC_006583:3835018...3834876, 3834194...3834100, FT 3831558...3831467, 3831270...3830730, 3830352...3830298, FT 3829767...3829617, 3825724...3825701, 3825219...3825079, FT 3823534...3823447, 3821408...3821213, 3819613...3819493, FT 3816658...3816155) XX SQ Sequence 2151 BP; 370 A; 708 C; 706 G; 367 T; other; atggacaggc tccctggggc ccggaggtgt ccacttgcca gagcagcccg agtgacaggt 60 ggagcctgtg gccgccaccc tggaggagcc agggctgccc tactgctgtc ctcccacggc 120 cggcctgacc gcttcagccc atgggtgacg ccagcattcc ctgtcgttgt tagcagcatc 180 ctgtgccatc tgaagagtgt ctatttggat gacaaacgac acagcacaga gcaggaagct 240 ccactttcca aagccagtgt gtacatcgtc ccccagcttg ctggaaactc cttccctgcc 300 cttccccctg aaccttcact ggaggagcag gcgctgtgtc ctgagcgtgg cgggcaccct 360 gggccatggc cctgcgccct gagcccgcgg gcggccggcg cgtgtcacca tatcgtgggc 420 ggctgcaggg tgcgcctggc tgtcccctcg cgcgcctgga gcgcctgcgg gcctgccgag 480 gccacggcga ggtcctgcgg gtgccacgag ttcttcgacc gcagcccgtg cgcctcccgc 540 gccaccgcgg cgctggcctt gggcgccggg gcctccgggg catcgacgag ggcgcctggg 600 gcgctgctgc ctccgccgcc gcctgcgccg ccgcgaggag gaggcggagg aggcggccga 660 ggcgcgcggg gccgcgggga gaccaggggg cgcggggcac ggccggcgcc tgcgggaccc 720 gctggacgac ccgcgctctt cgccggcgtg tccgtcgcct tcgtggccgc caccggtcgg 780 cctgtgcctg ggcaccatcc ccacatccgc gcggaggaaa agccggtgaa cggcggcctg 840 caagcggggc gctggggcgg aaaccactgg gtgcagctga cccgcggccc cagagcaccc 900 tccctgctct gctcagagca cccacacccc ctgctcccac cttccagcaa tgggcagacc 960 caaaccccct cctggggccg ggagctgaga tcaaagcctc agagcccttc agaggtagca 1020 gggtctgcgg agcacacctg ctggggtcct cccattaccc agagacacag tgaagaggga 1080 caaacgtcca tggccagaaa ggagcccgag ccagaggccc tctgtggcct tcaccttcag 1140 ggtgtaggag gctctgagaa ggcgagaaca gcatgcggct accccgtgag catgcaccct 1200 gattactgcg ggaaaaatca ggaagcaggc attgactctc ctgaatcagc aaaacccagg 1260 gtccacgtgg ggagcgggat gtgcctgccc gtggaggctc tcattctggt tcaccttgct 1320 cttctggagg gggctgtttc tctgcggacg acaccaggtg tgggaagctc tggaggttgc 1380 atgcagggca gctgcaaggc ccgagaccta cctgtccacc ttgccagccc tagtacctca 1440 tcctgtacct gcaggaatct cagagctgtt gagataacaa taattcatgc aaatcacatc 1500 agactgtgct tcgcacacag aattaacctc tgcacctgtc ttatcaccat gggcatcggg 1560 agccgcctgc agcacagcat acggcagcac atcccaggag gagccatttg tctcctcacc 1620 ttgcatgggc agcgagaaca gcccatggtg acggcattca ggctgtggcg cctgggggcc 1680 cttactctgt ggctcgagga ggagccagtc ccgtcctgtg gccttcaccc ggccgcggac 1740 acgctggttc gtccaccgag agtcacagca cagtgtgatg ggatcggtgg agctccgtgg 1800 ccaggccacc aactggtgga tgctgtcagt gagaacaagg ccggggaggc gccgtgggcg 1860 acctctgctg cgggagactg tgccccacag cctcacagtg gccgggcagg gcggggagac 1920 cgggtcgtgt gctcggagca tgatcacggg cgctggaccc cgcagcgctg ctctggctcc 1980 catctctgcg ccccctggtg gatctgctcc atgtgcaaaa gtgctgacat gacgggtgca 2040 gttttccgtg tgaatgttaa acctctgcag ctgcgtggaa agcttggcca tcatggggaa 2100 cggctcgagg ttctgcgggg gaactgctct gctcgccatc agccgtcata g 2151 // ID NC006583_49; SV 1; special; RNA; MAM; 1176 BP. XX AC NC006583_49; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_49; NC006583_49. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..1176 FT /organism="Canis familiaris" FT CDS 1..1176 FT /protein_id="NC006583_49" FT /db_xref="trGEN:NC006583_49" FT /translation="MRRKLSTLPAATLLSSFLQHVPEIFQVHGHLLSKQRQFY FT RMGGSPGMVLGASRLCVPRSLSWDLHALAEALTGRDGTAPPVDGHLDEPACRD FT TCLGPVHRNPTGHITHSTAESSAGATLRLHPGATEAAVTLDGAGRGETSLGPT FT ADDQEHKCPTQKVISEVKGFHPKQTAPGEDLTGRDKEMAVGKGQGPRPMNRSP FT PVQLGASPSTGFCVDAWCDSDFPCVDASRTQALFRDRYSRRQRAQPGGLWICG FT GHGSRQALPSPASGSPYMWQIPQRQWRCQEAHMDSPGVRDPSGLGPRLQVRGQ FT AGTGRWWMLPGSRKATRGPCALLASSQHGPPGPSTRLLRDGELVKACPPEPRG FT MASAACFTSCGPVLFHTLLQNSTGKPPPPGRQPH" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '-' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..60 FT /number=1 FT /note="FIRST EXON; p-value: 0.544." FT exon 61..185 FT /number=2 FT /note="INTERNAL EXON; p-value: 0.256." FT exon 186..287 FT /number=3 FT /note="INTERNAL EXON; p-value: 0.811." FT exon 288..471 FT /number=4 FT /note="INTERNAL EXON; p-value: 0.491." FT exon 472..587 FT /number=5 FT /note="INTERNAL EXON; p-value: 0.909." FT exon 588..689 FT /number=6 FT /note="INTERNAL EXON; p-value: 0.916." FT exon 690..1176 FT /number=7 FT /note="LAST EXON; p-value: 0.863." FT CONTIG join(NC_006583:3848111...3848052, 3848033...3847909, FT 3843761...3843660, 3841916...3841733, 3838062...3837947, FT 3837760...3837659, 3837042...3836556) XX SQ Sequence 1176 BP; 224 A; 380 C; 378 G; 194 T; other; atgcggagga agctttccac cctgccggct gccactctgc tcagctcttt cctccaacat 60 gttcctgaga ttttccaagt gcacggtcac ctgctcagca agcagagaca gttttaccgc 120 atgggtgggt ccccagggat ggtgctgggt gccagcaggt tgtgtgtccc ccgctccctg 180 tcctgggatc tgcacgcgct ggcagaggcg ttgacgggac gggatgggac ggcgccccct 240 gtggacggcc acctagatga gccagcgtgc agggacacct gcctgggacc tgtgcacagg 300 aatccaacag ggcacatcac gcacagcaca gctgagtcct cggccggggc cacactgcgc 360 ctccatcctg gggccacaga ggcagctgta acgttagatg gagcgggccg gggagaaacg 420 tccttgggac ccacagcaga tgatcaagag cacaaatgcc caacacagaa agtcatctcg 480 gaggttaaag gtttccaccc caagcagact gcacccgggg aagacctgac aggccgggac 540 aaggagatgg ccgtgggaaa gggccagggt cctcgcccca tgaacaggtc gccacccgtg 600 cagcttgggg cctcgccctc caccggcttc tgcgtggacg cctggtgtga cagtgacttc 660 ccttgcgtgg atgcttcaag gactcaagcg ctcttcaggg acagatactc acgcaggcag 720 cgggcacagc cagggggcct gtggatctgt ggtggtcacg gcagccgcca ggctctccca 780 tcaccagcat cggggtcgcc atacatgtgg cagattcccc agcggcagtg gcgatgtcaa 840 gaggctcaca tggacagccc aggggtgcgg gatccatcag gcctggggcc tcggctgcag 900 gttaggggtc aggcgggaac cggcaggtgg tggatgctgc ctggtagtcg gaaagccacg 960 cgtggcccct gtgccctcct ggcctcctca caacatggcc ccccgggccc ctcgacgagg 1020 ctcctgaggg acggggagct ggtgaaggcc tgtcctccag aaccacgtgg catggcatcc 1080 gccgcctgct tcaccagctg cggccccgtc ctattccaca cgctgctgca gaactccacg 1140 gggaagccgc ccccaccggg acgtcagcca cactga 1176 // ID NC006583_50; SV 1; special; RNA; MAM; 891 BP. XX AC NC006583_50; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_50; NC006583_50. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..891 FT /organism="Canis familiaris" FT CDS 1..891 FT /protein_id="NC006583_50" FT /db_xref="trGEN:NC006583_50" FT /translation="MATKGLLSVAGLPETHLWPTAEWLALNAPCALSSACKEV FT PSRHFRQEKRLCLGPRRLLEVGAVPSDGAGAGVHVSWRQAIYLLLKAQGTLHG FT TIRALDETPSYGSRSFVCATDKNELRRDNFLLLQSHSPPPLSAGHQGDSMELG FT SQTSMRRTNSLDRRLTAGEGITSKCIKDVNVRANTVEPRSHVAASDLIADYRT FT DNGDHVQRSMLDSSQGLARPLTGQRITTEEGGPARPQLCALSTCKNPCWSFLF FT PSVTHLNEPERCHHTVSGNCRHQKGEQEVTLLVEMLQGQQRSLLL" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '+' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..328 FT /number=1 FT /note="FIRST EXON; p-value: 0.937." FT exon 329..406 FT /number=2 FT /note="INTERNAL EXON; p-value: 0.721." FT exon 407..552 FT /number=3 FT /note="INTERNAL EXON; p-value: 0.378." FT exon 553..650 FT /number=4 FT /note="INTERNAL EXON; p-value: 0.115." FT exon 651..777 FT /number=5 FT /note="INTERNAL EXON; p-value: 0.055." FT exon 778..891 FT /number=6 FT /note="LAST EXON; p-value: 0.003." FT CONTIG join(NC_006583:3851628...3851955, 3852057...3852134, FT 3852903...3853048, 3853865...3853962, 3855424...3855550, FT 3860226...3860339) XX SQ Sequence 891 BP; 197 A; 271 C; 250 G; 173 T; other; atggccacca aggggctcct ctcagtggca gggctgccag agactcatct ctggccaact 60 gcggagtggc ttgccctgaa cgccccatgt gccctgagct ctgcctgcaa ggaggtgcct 120 tccagacact tccgccagga gaagcgtctc tgccttgggc ccagaaggct tctggaggtc 180 ggagctgttc caagtgacgg ggctggtgct ggcgtccatg tctcctggcg tcaggccatc 240 tacctgctcc tgaaagcaca gggcaccctc catggcacca tcagggccct ggatgagaca 300 ccttcctatg gctctagatc atttgtgtgt gctacggata agaatgagtt acgtagggac 360 aacttcctgc tcctgcaaag tcactccccg cccccccttt cagcagggca ccaaggcgac 420 tctatggagc tggggagcca gacatccatg cgcagaacga acagcttaga ccgtcgtctt 480 actgcaggtg agggaatcac ctcgaaatgc atcaaagacg tgaatgtgag agccaacact 540 gtagaaccca ggagccatgt cgccgcttct gatctcatcg ctgactaccg tacggacaac 600 ggggatcatg tccaacggag catgctggat tcctcacagg gcctggcccg ccccctcaca 660 ggtcagcgga tcaccacgga agaaggtggc ccagccaggc cgcagctctg tgccttaagc 720 acatgcaaga acccgtgctg gtctttcctg ttcccgtctg tgactcacct gaatgagcct 780 gaaagatgtc accacacggt ctcaggaaac tgccggcacc agaaagggga gcaagaggtc 840 actttgctgg tggaaatgct gcaagggcag cagagaagcc tcctcctata g 891 // ID NC006583_51; SV 1; special; RNA; MAM; 1173 BP. XX AC NC006583_51; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_51; NC006583_51. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..1173 FT /organism="Canis familiaris" FT CDS 1..1173 FT /protein_id="NC006583_51" FT /db_xref="trGEN:NC006583_51" FT /translation="MALTHFLLPGLPPHPRPACAAAQNPGQGPNGRLWSPEAR FT DRVNPVRGLYFHLALAASPPTHRFAPPPGPRLKSHQHQGDAYDPRLLPGPEPL FT VEAGDGEASAQEEECEAETEVAILRMCTQRLPQGSVGHSATDTSPPLAQQRPC FT SPQTSRAWNGSPPSAGQELTASMTRVPTVHCLRSEFTASPHLEPNCKVRTCPT FT WSAVLLLGHSVRGTRAIHLSETRQRKCSHMSGDQSQARTAPSPQTSNVPPAQA FT TTSIASGLGPESGLCTLWHTPPTAAAPGAVTEVGQVDFHLPKERPLLVDYQPV FT FLWRRSLSEVSVFRLRLEATLPSWERSNQRLLPRAGWVVQDSDTPAPGVLAGD FT HDCAGSPASPDSGGLPGGSRVRAPSPGAAGERF" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '-' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..81 FT /number=1 FT /note="FIRST EXON; p-value: 0.467." FT exon 82..262 FT /number=2 FT /note="INTERNAL EXON; p-value: 0.718." FT exon 263..386 FT /number=3 FT /note="INTERNAL EXON; p-value: 0.866." FT exon 387..702 FT /number=4 FT /note="INTERNAL EXON; p-value: 0.735." FT exon 703..751 FT /number=5 FT /note="INTERNAL EXON; p-value: 0.332." FT exon 752..1173 FT /number=6 FT /note="LAST EXON; p-value: 0.167." FT CONTIG join(NC_006583:3873230...3873150, 3873003...3872823, FT 3871979...3871856, 3871331...3871016, 3869231...3869183, FT 3868665...3868244) XX SQ Sequence 1173 BP; 227 A; 411 C; 339 G; 196 T; other; atggccctca cacacttcct gctgccaggg ctcccacccc accccaggcc tgcgtgcgca 60 gcagcccaga acccgggaca gggacctaac ggacgcctct ggtccccgga agcccgagac 120 cgtgtaaacc ccgtgcgtgg actttatttc cacctggctc ttgctgcatc tcccccgact 180 cacaggttcg ccccaccccc gggccccaga ctgaagagtc atcagcatca aggggacgcc 240 tatgacccca ggcttcttcc tggacctgag cctttggtgg aggctggaga tggggaagca 300 agcgcacagg aggaagagtg tgaggctgaa acagaagtag ccatcctgcg catgtgcacg 360 cagcgtctcc ctcagggctc cgtgggacac agtgccacag acacatcccc cccactggct 420 cagcagaggc cctgcagtcc acaaacatcc cgtgcctgga acgggtcccc gcccagtgca 480 gggcaggagc tgaccgcgag catgacccga gtacccacag tgcactgcct tcgatccgag 540 ttcacagcga gtccccacct tgagccaaac tgtaaagtgc gcacatgtcc cacgtggagc 600 gcggttctcc ttctgggcca ctcggtccga ggcactcgcg ccatccactt gtcagaaaca 660 cgacaacgca aatgcagcca catgtcagga gaccaaagcc aggcaaggac tgcaccctcg 720 cctcagacga gcaatgttcc tccggctcaa gcgaccacgt ccattgcgtc gggcttgggc 780 cccgagagcg gactctgcac tctatggcac acgccaccaa cggcagccgc cccaggagcc 840 gtcacggagg tgggacaggt ggacttccac ctccccaagg agaggcctct gctggtcgat 900 tatcagccag tgtttctgtg gagaagaagc ctttccgagg tctccgtgtt caggctcagg 960 ctagaagcaa cacttccttc ctgggaacgc agcaaccagc gtctcctccc cagggctggc 1020 tgggtcgtcc aggattcgga taccccagcg cctggtgtgt tggcgggaga ccatgactgc 1080 gcgggatccc cggcgtctcc tgactcgggc ggccttcccg ggggctctcg ggtccgcgcc 1140 ccctcccccg gggctgctgg ggagcggttc tga 1173 // ID NC006583_52; SV 1; special; RNA; MAM; 1692 BP. XX AC NC006583_52; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_52; NC006583_52. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..1692 FT /organism="Canis familiaris" FT CDS 1..1692 FT /protein_id="NC006583_52" FT /db_xref="trGEN:NC006583_52" FT /translation="MRPRLLVSAFLGQPMWMCPLLVPFRWGVASQLTCTGACQ FT SQATGYIHDGNTCEGPVSVTPSAMPPKGGRSTGSLEERKNGVEIWRSGGGDGY FT ILNSFIWAKQREGGRPLEDTVSLSTCGALTPTLCLWSGDRWPWARRGSRPQGY FT LSESPLPVAFLTWTQSDTCRGAAAGGCHWGTEQTEARGQGTAVGCSVLGGFSS FT HRTASDTGAFLMRSSVPHVPRVFRVSVCPVCPVCAMCPALSEYFVQCSKNKKA FT SSFNSECVGREATVPGMQAPSSPRRELTQDGTGGLSRCLIPRGLEPVWVMTAH FT SADCPAGRTPISGTHLFLQLLARSLTPCRLDELTEHPESWALPMHTSPLNRVP FT PELRTALPPSREQQLGSWFLPPLKSQKGQATRPTVTNSPYSQTWLQPLPHVWG FT PSPQSSPLGVALMWATVMIGASPLALSVSLGLPCLAMRSARAFSGDMETWDIC FT ALVRSPVTDLTLGRVTGTLSLRPCHQGQASLPMPRATEGRGAVVRVCPSSNGK FT RGPGGPRAAPEDSGPVATAPVAAPPGLRGTGAPNRSELKDVMSNHVT" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '+' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..157 FT /number=1 FT /note="FIRST EXON; p-value: 0.922." FT exon 158..320 FT /number=2 FT /note="INTERNAL EXON; p-value: 0.646." FT exon 321..406 FT /number=3 FT /note="INTERNAL EXON; p-value: 0.463." FT exon 407..949 FT /number=4 FT /note="INTERNAL EXON; p-value: 0.537." FT exon 950..1381 FT /number=5 FT /note="INTERNAL EXON; p-value: 0.398." FT exon 1382..1473 FT /number=6 FT /note="INTERNAL EXON; p-value: 0.814." FT exon 1474..1632 FT /number=7 FT /note="INTERNAL EXON; p-value: 0.371." FT exon 1633..1692 FT /number=8 FT /note="LAST EXON; p-value: 0.383." FT CONTIG join(NC_006583:3876006...3876162, 3876569...3876731, FT 3876891...3876976, 3880366...3880908, 3881421...3881852, FT 3884375...3884466, 3887057...3887215, 3891054...3891113) XX SQ Sequence 1692 BP; 285 A; 541 C; 534 G; 332 T; other; atgcggcctc gcctgctagt ttctgccttc ctgggacaac ccatgtggat gtgccctttg 60 ctggtgccct tccgctgggg tgtggccagc cagctcacct gcacgggcgc atgccaatcc 120 caagcgactg gttacatcca cgatggaaac acctgtgaag ggcctgtgtc tgtcaccccc 180 agtgccatgc cccctaaagg tggcaggagc acaggttctc tggaggaacg caagaatggc 240 gtcgagatct ggaggagtgg aggtggcgat ggctacattc tgaattcgtt tatttgggcc 300 aagcaaaggg agggtgggag gcccttagaa gatactgtgt cactgagcac atgtggtgcc 360 cttactccca ctctgtgcct gtggtcaggt gaccgctggc cgtgggccag gcgagggtca 420 cggccacagg gttatttgtc cgagtcacct ctgcctgtgg ctttcttgac ctggacgcag 480 tcagacacct gccgtggggc agctgctgga gggtgtcact ggggcacaga gcagacggaa 540 gcccgtggtc aaggcacggc ggtagggtgc tcggtgctcg ggggcttctc ctcccacaga 600 acagcttctg acacaggggc cttcctcatg cggagcagtg tgccccatgt gccccgtgtg 660 ttccgtgtct ccgtgtgccc cgtgtgtcct gtgtgcgcca tgtgcccggc actgagtgag 720 tattttgttc agtgtagcaa gaataaaaaa gcctcctcct ttaattctga atgtgtggga 780 cgtgaggcca cggtcccggg gatgcaggcc ccctcatcgc caaggaggga gctgactcag 840 gacggcacgg gtggcctcag caggtgcctg atcccccggg gtttggaacc agtgtgggtg 900 atgaccgcgc actcggctga ctgccctgcg gggcgaacac ccatctcggg gacccacctg 960 tttctgcagc tccttgctcg cagcctgact ccatgcagac tcgacgagct gaccgaacat 1020 ccggagtcct gggcacttcc catgcacacg tcccccctga accgtgtccc ccctgaactg 1080 aggacagcac tgcctcccag ccgggagcag cagttgggct cctggtttct gccccccctg 1140 aaatcacaga aaggccaggc cacccgtccc actgtcacca actccccata ttcacagact 1200 tggcttcaac ccctgcctca cgtctggggc ccgtcccccc agagcagccc cctcggggtc 1260 gccctcatgt gggccacagt gatgataggc gcctcccctc tggcgctctc cgtgtctctc 1320 gggctcccct gtctggctat gcgcagtgcc agggccttct ctggagacat ggagacgtgg 1380 gacatctgtg ctttagttcg cagccctgtc acggacctga cactggggcg tgtcaccggg 1440 accctgtcac tgcggccctg tcaccagggc caggcctccc tgccgatgcc tcgggccacg 1500 gaaggccggg gggccgtagt ccgggtgtgt ccatccagca acggcaagag ggggccgggg 1560 ggccccaggg cagctcctga ggacagtggg cctgtggcca cagcccccgt ggcggctccg 1620 ccaggcctgc ggggcaccgg ggcgccgaac agaagtgaac tgaaggacgt gatgtccaac 1680 cacgtgacgt ga 1692 // ID NC006583_53; SV 1; special; RNA; MAM; 5079 BP. XX AC NC006583_53; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_53; NC006583_53. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..5079 FT /organism="Canis familiaris" FT CDS 1..5079 FT /protein_id="NC006583_53" FT /db_xref="trGEN:NC006583_53" FT /translation="MNRTPSRDPPEPPSRVLVGDARSPSATILFPVLPRKGEA FT VWPFVRLSTNWLPVLQGLSAASGALHFGCSRCFPPLPVCSLLFRFLTVPLGSR FT GRLDTAHPAGGGGLRPRPAAMEAPPAGRVPAEGAPPAAVAEVRCPGPGPLRLL FT EWRVAAGAAVRIGSVLAVCEAAASAQPAGSAPARAGSGGCVRAERRLRSERAG FT VVRELCAQPGQVVVPGFLPETSQNVHHSPMSLGSHFSPHFLPVLLNIELVWAV FT LVRLEGCSHPVVMKGLCAECGQDLTQLQSKNGQQQVPLSTATVSMVHSVPELM FT VSSEQAEQLGREDQQRLHRNRKLVLMVDLDQTLIHTTEQHCQQMSNKGIFHFQ FT LGRGEPMLHTRVRPHCREFLEKIARLYELHVFTFGSRLYAHTIAGFLDPEKKL FT FSHRILSRDECIDPFSKTGNLRNLFPCGDSMVCIIDDREDVWKFAPNLITVKK FT YVYFQGIGDINAPSGSRESQARRKVNQSSRGADGPEQAPSIREIEEGRQVSGV FT EQSNGLGKPMRELNGGASPRGDWPLPGQEEERGARPTTRGPLADGKGPPACAQ FT QHGRTLPEKRPAQGTASGDLDFDLSSDSESDAQSSDGESGEGKSLERPQGARD FT AGKAAQRGGPSGPGGERPTGVSPCAESAPDAQEEGERDGLCGLAGGSADRKEA FT ETESQNSEQSGITAGESLDQSVEEEEDDEDDGDEDDHLVYLEEILARVHSDYY FT AKYDRYLRGDSQEAPDIRKIVPELKSRVLADVAIIFSGLHPTNFPIEKTREHY FT HATALGAKILTQLVLDPDNPDRATHLIAARAGTEKVRQAQECGQLHVVNPDWL FT WSCLERWDRVEEQLFPLRDDYGRAQRTQPGPEVRIYDANTGKLIRKGAVGPGP FT PGSLAVHTEHSSFRYMRLRVVMQQRGAHERFTLPWHLQATSVCTISPHRCEVS FT TLVCPGNRRLQGLCQLPLEALVPLLLHAEGCTKCLAYLCRFQAGCLVEFDVFY FT VGAVSLWIVWLEGRVLVADHDRGARGVGQTPSPASHCGGQLLGVDAEAMCVEG FT APPGTGPRAEHYDNARRFVVLMFDHFPELCACHPERYPLPPADSWLASALGTF FT SWFRRAQTERVVQPPRQMLAQELPDSRPGEQPGPSGRKRQPSMSETMPLYTLC FT KEDLESMDKEVRPAGASAPGAGRRPYSRTALGVPGTLPPRHAAALSDASGHRQ FT RWKAQPRLASGADGQDLVSVIGEERTACDEAQAAGISELRQTRSPKSLTIARH FT APAEVEAAETTLNTCRTSSSGSKLRHRGCEESGILVLLRLQVDDILGEGSDDS FT DNEKRRPEEERKERPPPREPQATPEATPSSERTRAGSRGPRAAGGQPVLQMRG FT QLGGSLSRRLRQSHGSRAVLRLDPQRLPPKESDFARTAKLVIRHTAAALATER FT PDPAAAAQEPQGLIPHNGKEAVGEVAGVHGPTLEPTERLPHDLQRCTTTAGSL FT WSCLSRWLLLMSILLDPRGQKTPTVLTCTHAYFTLGTCWRRQLAASVGGAQCG FT GALEWSAGVRCWHALQFVVRVIGFDSRLMGGLQVGCHCWDALEHGEQTELVPR FT SRCPSATSTEDMARCVCMCVSLGPRGVPACGCMRACACMSGHVDADAGARARV FT HQHPPAQASDSLRLSCRGHKRKLPEEDAGSASSGESSGEDEEGSSSEADEMAA FT ALEAELNDLM" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '-' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..8 FT /number=1 FT /note="FIRST EXON; p-value: 0.454." FT exon 9..118 FT /number=2 FT /note="INTERNAL EXON; p-value: 0.352." FT exon 119..318 FT /number=3 FT /note="INTERNAL EXON; p-value: 0.358." FT exon 319..641 FT /number=4 FT /note="INTERNAL EXON; p-value: 0.569." FT exon 642..746 FT /number=5 FT /note="INTERNAL EXON; p-value: 0.845." FT exon 747..830 FT /number=6 FT /note="INTERNAL EXON; p-value: 0.988." FT exon 831..924 FT /number=7 FT /note="INTERNAL EXON; p-value: 0.776." FT exon 925..1053 FT /number=8 FT /note="INTERNAL EXON; p-value: 0.670." FT exon 1054..1204 FT /number=9 FT /note="INTERNAL EXON; p-value: 0.976." FT exon 1205..1295 FT /number=10 FT /note="INTERNAL EXON; p-value: 0.997." FT exon 1296..1462 FT /number=11 FT /note="INTERNAL EXON; p-value: 0.994." FT exon 1463..2437 FT /number=12 FT /note="INTERNAL EXON; p-value: 0.997." FT exon 2438..2579 FT /number=13 FT /note="INTERNAL EXON; p-value: 0.948." FT exon 2580..2765 FT /number=14 FT /note="INTERNAL EXON; p-value: 0.132." FT exon 2766..2914 FT /number=15 FT /note="INTERNAL EXON; p-value: 0.384." FT exon 2915..3016 FT /number=16 FT /note="INTERNAL EXON; p-value: 0.276." FT exon 3017..3326 FT /number=17 FT /note="INTERNAL EXON; p-value: 0.795." FT exon 3327..3685 FT /number=18 FT /note="INTERNAL EXON; p-value: 0.024." FT exon 3686..3850 FT /number=19 FT /note="INTERNAL EXON; p-value: 0.095." FT exon 3851..3897 FT /number=20 FT /note="INTERNAL EXON; p-value: 0.551." FT exon 3898..4055 FT /number=21 FT /note="INTERNAL EXON; p-value: 0.995." FT exon 4056..4142 FT /number=22 FT /note="INTERNAL EXON; p-value: 0.962." FT exon 4143..4402 FT /number=23 FT /note="INTERNAL EXON; p-value: 0.925." FT exon 4403..4548 FT /number=24 FT /note="INTERNAL EXON; p-value: 0.542." FT exon 4549..4660 FT /number=25 FT /note="INTERNAL EXON; p-value: 0.240." FT exon 4661..5079 FT /number=26 FT /note="LAST EXON; p-value: 0.266." FT CONTIG join(NC_006583:3952195...3952188, 3950667...3950558, FT 3949056...3948857, 3947729...3947407, 3940362...3940258, FT 3937549...3937466, 3936840...3936747, 3935043...3934915, FT 3932720...3932570, 3930641...3930551, 3928389...3928223, FT 3927464...3926490, 3924777...3924636, 3924033...3923848, FT 3919480...3919332, 3918355...3918254, 3915510...3915201, FT 3914672...3914314, 3908716...3908552, 3906959...3906913, FT 3903474...3903317, 3900927...3900841, 3900002...3899743, FT 3897274...3897129, 3895812...3895701, 3895408...3894990) XX SQ Sequence 5079 BP; 1002 A; 1508 C; 1691 G; 878 T; other; atgaacagga ctccatcacg ggatccccca gagcccccat ccagggtcct tgtgggggat 60 gcccgttccc cttctgccac gatcctgttc ccggtcctcc ccaggaaggg tgaggcagtc 120 tggccatttg tccgcctttc caccaactgg ctgccggttt tgcagggtct ctccgccgcc 180 tccggcgcgc tccacttcgg ctgcagtcgg tgcttcccgc ccctgcccgt gtgtagtttg 240 ctcttccgat tcctgacggt cccactaggt tccaggggtc gcctggacac cgcccatcct 300 gcgggggggg gggggctgcg accccgcccg gccgcgatgg aggcgccgcc cgcgggccgc 360 gttcccgccg agggcgcccc gccggcggcc gtggccgagg tgcgctgccc gggccccggg 420 ccgctgcgcc tgctcgagtg gagggttgcg gcgggcgcgg ccgtgcgcat cggctcggtg 480 ttggcggtgt gtgaggccgc cgcctccgcg cagcccgcgg ggtccgcccc tgcccgcgcc 540 ggctccgggg gctgcgtgcg cgccgagcgc aggctgaggt cggagcgtgc cggtgtggtg 600 cgggagctgt gcgcgcagcc gggccaggtg gtggtccccg ggtttcttcc agaaacatcc 660 cagaatgtcc accacagccc catgtctctg ggttcacact tctccccgca tttcctgccc 720 gtgctgctga atatagagct tgtctgggcg gttctggtac ggttggaagg atgtagccac 780 ccggttgtca tgaaaggcct gtgtgctgag tgcggccagg acctaaccca gctgcagagt 840 aagaacgggc agcagcaggt ccctctgtcc acagccactg tgtccatggt gcacagcgtc 900 ccggagctga tggtgagctc tgagcaagct gagcagctgg gaagggaaga ccagcagcgt 960 ctacatcgaa acagaaagct ggtgctcatg gtggacttgg accagacgct gatccacacg 1020 accgagcagc actgccagca gatgtcgaac aaaggcatct tccacttcca gctgggccgg 1080 ggcgagccaa tgctgcacac ccgcgtgcgt ccccactgca gggagttcct ggagaagatt 1140 gccaggctgt acgagcttca tgtcttcacc tttgggagcc ggctgtatgc ccacaccatt 1200 gcaggctttt tagaccctga aaagaagctt ttttctcatc gaatattatc aagggacgaa 1260 tgtattgacc cgttttctaa aacagggaac ctcagaaatc tctttccctg tggagactca 1320 atggtctgca tcattgatga tcgagaagat gtctggaagt ttgcccccaa tctgatcacc 1380 gtgaagaaat acgtctactt ccagggcata ggagacatca acgctccctc tgggtctcgg 1440 gagtcccagg caagaaggaa agtaaatcag tcttcaagag gtgctgatgg cccagaacaa 1500 gctccgtcca tcagggagat cgaggaagga cggcaggttt ctggggttga gcaaagtaat 1560 ggccttggga agcccatgag ggagctcaat gggggcgcct ctccacgagg ggactggccc 1620 ctgcctgggc aggaggagga gagaggagcc cggcccacca cccgtggccc cttggctgat 1680 ggcaaggggc cccccgcctg tgctcagcag catggtcgga cattgccgga aaagcgacct 1740 gctcagggca cggccagtgg tgacctggac tttgacctct ccagcgacag cgaatcagac 1800 gcccagtcat ctgatggtga aagcggggag gggaaaagcc tggaaaggcc tcaaggagca 1860 cgagatgcag gaaaggcggc acagcggggc ggcccctctg gcccaggagg ggagaggccc 1920 acaggagtga gtccatgtgc agagtcagcc ccagatgcgc aggaggaggg cgagcgggat 1980 ggcctatgcg ggctggccgg tggctccgcg gacaggaagg aagccgagac ggagtcgcag 2040 aacagcgagc agtcgggcat cacggcgggc gagtctctgg accagagcgt ggaggaagag 2100 gaagatgacg aggacgacgg ggacgaggac gaccacctgg tctacctgga ggagatcctt 2160 gcccgagtgc attccgacta ctatgccaaa tatgaccggt acctccgtgg ggacagccag 2220 gaagcccccg acataaggaa gatcgtccca gagctcaaga gcagagtgct ggcagacgtt 2280 gccataatat ttagtgggct acacccaaca aattttccga tcgagaagac acgggagcat 2340 taccatgcca cggcccttgg agccaagatc ctcactcagc tagtgctgga ccctgacaac 2400 cccgacaggg ccacccacct gatcgcggca cgtgcaggca cagagaaggt gcgccaggcc 2460 caggagtgtg ggcagctgca tgtggtcaac cccgactggc tatggagctg cctggagcgc 2520 tgggacaggg tggaggagca gctcttccct ctcagggacg actatggccg agcgcagagg 2580 acccaaccag ggccggaagt tcgcatctat gacgccaata cgggcaagct catccggaaa 2640 ggtgctgtgg gccctgggcc ccctggctcc ctggcggtgc acacggagca ctcctccttc 2700 aggtacatgc gcctgcgagt tgtcatgcag cagaggggtg cccacgagcg cttcacgctg 2760 ccatggcacc tccaggccac ctctgtttgc accatcagcc ctcacagatg tgaggtgtcc 2820 acactggtat gtcctgggaa ccgcaggctg caaggtctgt gccagctgcc ccttgaggct 2880 ctggtccccc tgctcctgca tgccgagggc tgcacgaagt gtcttgcgta tctctgccgt 2940 ttccaagctg gatgtttggt ggagtttgac gttttttatg taggtgctgt ttctttgtgg 3000 atcgtgtggc tggaagggag ggtgctagtg gccgaccacg accgtggggc cagaggtgtg 3060 gggcagactc cgagcccagc aagccactgc gggggacagc tgctcggggt ggacgcagag 3120 gccatgtgcg tggagggcgc cccgcctggg acaggcccca gggcagagca ctatgataac 3180 gctcgccggt ttgtcgtgtt aatgtttgac catttcccag aactgtgcgc atgccatcct 3240 gagaggtacc ccctgcctcc ggcggacagc tggctggctt cagccctggg caccttctct 3300 tggttccgca gagcacagac agaaagagtg gttcagccgc cgcggcagat gcttgcgcaa 3360 gagctgccag atagccgacc tggagagcag cccggcccca gtggacggaa gcgacagccc 3420 agcatgtcag agacaatgcc gctgtacacg ctgtgtaagg aggacttaga gagtatggac 3480 aaagaggtga ggcccgcggg cgccagcgcg ccgggggcag ggcggcgacc gtactcacgc 3540 accgcccttg gtgtcccagg gacgcttcca ccaagacatg cggcggcctt gagtgatgcg 3600 tcggggcatc ggcagcgctg gaaagcccaa ccgcgactcg ccagtggggc cgacggccaa 3660 gacctcgttt ccgtcattgg cgaggagaga actgcatgtg atgaggcaca agcagcggga 3720 atttcggaac tgagacagac acgctcaccc aagtcgctga caatcgcccg acacgcccct 3780 gctgaagtgg aggctgcaga aaccaccctg aacacgtgca ggacgtccag ctcaggatcc 3840 aagcttcgac acagaggctg tgaggagtca gggattctcg tgctcctgcg tcttcaagtg 3900 gatgacatcc taggagaggg cagtgacgac agcgacaatg agaagaggag accagaggag 3960 gagcggaagg agcggccccc accccgggag ccccaggcca cacccgaggc cacaccaagc 4020 agcgagagga ccagggcagg cagccggggg cccagagcag caggtggcca gcctgtgctg 4080 cagatgcgcg gacagctggg gggctctctt tccagaaggc tccggcagtc ccacggcagc 4140 agggctgtgc tcaggctgga ccctcagagg cttcccccta aggaaagtga ctttgccaga 4200 acagccaagc tggtcattag gcacacagca gctgccctgg ccacagagag gcctgaccca 4260 gctgctgcag cacaggaacc acaaggcctg attccacaca atggaaaaga ggcggtggga 4320 gaagttgctg gtgtgcacgg cccaaccttg gagcccacag agcgactccc acatgacctc 4380 cagaggtgca caaccaccgc aggttccctg tggtcctgcc tgagtcgctg gctgctcctg 4440 atgtccatcc tcctggatcc tcgtggtcag aagacgccca ccgtgctcac gtgtacccat 4500 gcttacttca cactgggcac gtgttggaga aggcagctag ctgcctcagt gggaggtgcc 4560 cagtgcggcg gagccttgga gtggagcgca ggtgtcaggt gctggcatgc acttcagttt 4620 gttgtcaggg tgattggttt tgacagccgc ctcatggggg ggctacaggt gggctgtcac 4680 tgctgggacg cccttgagca tggggagcag acagagcttg tgccgcgctc caggtgtcca 4740 agcgccacat ccacagagga catggcgcgc tgcgtgtgta tgtgcgtgtc cctaggtcca 4800 cgtggggtgc cagcgtgtgg gtgcatgcgt gcctgtgcgt gcatgtcggg gcacgtggat 4860 gctgatgctg gggcgcgtgc ccgtgtgcat cagcatcctc cagcacaagc atctgacagc 4920 ctgcgtctgt cttgcagagg ccacaagcgg aagctgcccg aggaggacgc cggcagcgca 4980 tccagcgggg agtccagcgg ggaggacgag gagggcagca gctcagaggc agacgagatg 5040 gccgcagcgc ttgaggcaga gctcaacgac ctcatgtga 5079 // ID NC006583_54; SV 1; special; RNA; MAM; 297 BP. XX AC NC006583_54; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_54; NC006583_54. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..297 FT /organism="Canis familiaris" FT CDS 1..297 FT /protein_id="NC006583_54" FT /db_xref="trGEN:NC006583_54" FT /translation="MALVAPGRRQVLLVKAAGVCMPVWAGASTPAFRLSIIAP FT QADGKGASASGPTLGACGSPDCIRQLLSGSDQVTAAANRPQRFLLFVLVVHTS FT QQREML" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '+' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..297 FT /number=1 FT /note="SINGLE EXON; p-value: 0.551." FT CONTIG join(NC_006583:3956847...3957143 FT join(NC_006583:3956847...3957143) XX SQ Sequence 297 BP; 58 A; 83 C; 94 G; 62 T; other; atggccctgg tggcccctgg gagaaggcag gtgctgctgg tgaaagcggc tggtgtgtgc 60 atgccagtct gggcaggggc tagcacacct gcctttcgac tgtcaatcat agccccacaa 120 gctgacggga agggagcgtc tgcatcagga cccacgctcg gggcctgtgg aagtccagac 180 tgcatcaggc agctcctttc tgggagcgac caggtaactg cggcagcaaa taggccccaa 240 cgcttcctgc tctttgtcct tgttgttcat acttcccagc agagggagat gctgtaa 297 // ID NC006583_55; SV 1; special; RNA; MAM; 6204 BP. XX AC NC006583_55; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_55; NC006583_55. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..6204 FT /organism="Canis familiaris" FT CDS 1..6204 FT /protein_id="NC006583_55" FT /db_xref="trGEN:NC006583_55" FT /translation="MATQVATAPARVLCVKVNTILKKRCGCMSVVMHHIRVPG FT RCVLCSHMLIVDMDKETEMKEEPKQREAQATPCVALLSDTAYPTSRPGRGALG FT AWTSGMCLPHGAPLPAPPVAFAPASCMLLPGEDGSPQLDQRLASPTGAHSARR FT AARHPQSPRPSPTRAVNPASMDMRWAPPRWDPDSRRPCTLLPPLHTVVFGFTH FT STAPLRTSPLVMAKLSCHKWTERHRRPPRLGLLGTPWTGFRHSARDDTAARLT FT VTMFLSICVLTPRPWFLSRTLPLGALAAPSSSWDRGRDGLGNRLYEKALCIDG FT GHAAVQAAGPGSVGMGVLSTPPRMCPLLLTARRFPPQTWEQVYIPDHMAANTL FT VVAMPAPRLPCTTRFPPILIISGIVNLWVMMSSSSHADQRMLTRGFCLNALPA FT VVTSVGISRALTCRLCSLFGEMSLCVFARFLASLQKALDAPLLRLTCVSHKSR FT PSLNPKAVATNSHHWGLGQSGGRELAWNRGPAATGEHGVHSAIGLQSQQEPHS FT VRVPIQPWQLLPLCSCRELSDSRVRMEALRTQSRTVVHDSWCMGLLHVCARCC FT PGPSVTVSIAKTIFLGSTGHEWHSQPPSACWSLPVHGLRPVPVATDLLRTSPN FT CLNLTLWEPPASTQTDTRTGVGSGLRARHWFTASCVCTAWKVGEGATPKPTAT FT RPRFTSEPQRPCRVGMQTLGVAQVDSVADPAQPPMVGLPWRLALLTCPPIAPI FT RARQPVPVDAWPCTALPPALGSTPTPACSPADPTQNLPGKPNTRLPRVRAQSN FT VQSESAAPTAGQGSLAASGPTPTIGIIHPEGTCPMSPECKVDSSVVSNTDTHM FT GFPHGTLQALAPVGVTRNWPSLKQDDFKLRQDAGRPSSAGDWTLLAQLAQVTR FT ALSQASLHSPVPAPGAKAACLPSPERLGVQRLGHQRKHVAEEGPQRRPGDSPC FT RRSAQGGPGLEASRSSGWQPDDNEILELSGELGPLHSILSDGQPLPAQHAFCQ FT DITLIMRPHVQPGQQEPSPEQSSPGHGPSLDKLERRRWAGMEGTVAPGTAVLS FT RGKPLPLGRRDLLSQIPFPARFKSAGMRLPCTELGAAAASADTSAQGCTAAGS FT AMGTRLTKHGAGAPTEEWPGTQCPWQAQGCGQRSGLDKPTGPEAGMEAGAALM FT AQRDSRPNRAASQALAQGQEGGRPLLQAPGILVSRRPAAEDAGASDTSSWRGL FT LAAASPELHPAPASLQDGREALALSGRVHTSGPVLPVHPFVHVCLTILETLRP FT ASPRNYFPPQLWSRKPGTLLSHAHGHTAHTQSVSTLLPLMARTSFVVSQGAWG FT SRVQTKAQDDLSLDEEHGQRVHSSTFLSGDSSGEGVAWSTDDARGQHVAPGEG FT PVLTGNHTLAKTQFQFWTSDARRVPGVSGTCFPLSRERTDPDSSPPGMLSAAD FT PGTCSNSSKATRCPEDLEQTLWPQRILPQPSDPIICARSLDLTPSRFHRPPQR FT EPHPVGCSCQGAELSYPQPVATIPWDLGVGMELQQGWCRPCRKIPGLPFQSLS FT GASDPQQPQLLISCGPTWTVSNSLVGPQADPKLQSTAAAGMPPRPRKTCRGRE FT GKQHWTADLNGSFGKGSLVVLHSHIVHLHIRTRGHGQRILRGPDNQDILPCVW FT GQAPGPSGMRAQSAWTWTIRTGSQPVSWVLDTGRPVSRTSSRSSRYLRPAESA FT ATDLGWSPALLHQFLLQMLTASSPVSCKETQTDSQAGDRGWVPVGPVPTTFLP FT CRPLVSGGPCHADSAAPLIPRTPEKEQAEPLVDVPGKHPAAEQGDRPSVSGPR FT VEDTRGRGATRTLGPLATSQGFPPRSPLACPDKTAGLPGHRHLVTHAGGRAPD FT PTPVPGTGQSGKGGGEEKNRKLPFPVLVETLTGKDPGCFPEDAKTQGRGVQRL FT HVLDRRPHSHCGHDTHTNYRQGPRTLIRSPGPGRARVQREGTVSCTLRGHACF FT QDRPARSTPRATSPYCSFVMLFNNRPVFNNQMGAQTLTARKGFCPGVNLLTKR FT HTASPKHGPEIRREPSATKAQVFKAQFTFLSCKPQTARSLMGQTGVSAPTAPG FT RPSGFPTQAAELHV" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '-' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..134 FT /number=1 FT /note="FIRST EXON; p-value: 0.301." FT exon 135..432 FT /number=2 FT /note="INTERNAL EXON; p-value: 0.198." FT exon 433..717 FT /number=3 FT /note="INTERNAL EXON; p-value: 0.157." FT exon 718..754 FT /number=4 FT /note="INTERNAL EXON; p-value: 0.877." FT exon 755..937 FT /number=5 FT /note="INTERNAL EXON; p-value: 0.769." FT exon 938..1048 FT /number=6 FT /note="INTERNAL EXON; p-value: 0.771." FT exon 1049..1145 FT /number=7 FT /note="INTERNAL EXON; p-value: 0.062." FT exon 1146..1323 FT /number=8 FT /note="INTERNAL EXON; p-value: 0.073." FT exon 1324..1450 FT /number=9 FT /note="INTERNAL EXON; p-value: 0.041." FT exon 1451..1602 FT /number=10 FT /note="INTERNAL EXON; p-value: 0.014." FT exon 1603..1725 FT /number=11 FT /note="INTERNAL EXON; p-value: 0.038." FT exon 1726..1762 FT /number=12 FT /note="INTERNAL EXON; p-value: 0.399." FT exon 1763..1950 FT /number=13 FT /note="INTERNAL EXON; p-value: 0.323." FT exon 1951..2086 FT /number=14 FT /note="INTERNAL EXON; p-value: 0.383." FT exon 2087..2352 FT /number=15 FT /note="INTERNAL EXON; p-value: 0.377." FT exon 2353..2532 FT /number=16 FT /note="INTERNAL EXON; p-value: 0.700." FT exon 2533..2602 FT /number=17 FT /note="INTERNAL EXON; p-value: 0.791." FT exon 2603..2766 FT /number=18 FT /note="INTERNAL EXON; p-value: 0.499." FT exon 2767..2949 FT /number=19 FT /note="INTERNAL EXON; p-value: 0.617." FT exon 2950..3208 FT /number=20 FT /note="INTERNAL EXON; p-value: 0.745." FT exon 3209..3445 FT /number=21 FT /note="INTERNAL EXON; p-value: 0.082." FT exon 3446..3646 FT /number=22 FT /note="INTERNAL EXON; p-value: 0.116." FT exon 3647..3867 FT /number=23 FT /note="INTERNAL EXON; p-value: 0.347." FT exon 3868..4046 FT /number=24 FT /note="INTERNAL EXON; p-value: 0.353." FT exon 4047..4256 FT /number=25 FT /note="INTERNAL EXON; p-value: 0.363." FT exon 4257..4426 FT /number=26 FT /note="INTERNAL EXON; p-value: 0.278." FT exon 4427..4546 FT /number=27 FT /note="INTERNAL EXON; p-value: 0.189." FT exon 4547..4701 FT /number=28 FT /note="INTERNAL EXON; p-value: 0.191." FT exon 4702..4742 FT /number=29 FT /note="INTERNAL EXON; p-value: 0.331." FT exon 4743..4884 FT /number=30 FT /note="INTERNAL EXON; p-value: 0.557." FT exon 4885..4984 FT /number=31 FT /note="INTERNAL EXON; p-value: 0.373." FT exon 4985..5110 FT /number=32 FT /note="INTERNAL EXON; p-value: 0.570." FT exon 5111..5248 FT /number=33 FT /note="INTERNAL EXON; p-value: 0.193." FT exon 5249..5470 FT /number=34 FT /note="INTERNAL EXON; p-value: 0.106." FT exon 5471..5572 FT /number=35 FT /note="INTERNAL EXON; p-value: 0.073." FT exon 5573..5620 FT /number=36 FT /note="INTERNAL EXON; p-value: 0.121." FT exon 5621..5790 FT /number=37 FT /note="INTERNAL EXON; p-value: 0.354." FT exon 5791..6015 FT /number=38 FT /note="INTERNAL EXON; p-value: 0.516." FT exon 6016..6204 FT /number=39 FT /note="LAST EXON; p-value: 0.840." FT CONTIG join(NC_006583:4031963...4031830, 4031284...4030987, FT 4027357...4027073, 4025783...4025747, 4025110...4024928, FT 4024829...4024719, 4023547...4023451, 4023149...4022972, FT 4019121...4018995, 4016995...4016844, 4016775...4016653, FT 4014430...4014394, 4013562...4013375, 4013145...4013010, FT 4010453...4010188, 4009637...4009458, 4009116...4009047, FT 4008457...4008294, 4005864...4005682, 4002901...4002643, FT 4001543...4001307, 4000268...4000068, 3999757...3999537, FT 3998003...3997825, 3997286...3997077, 3993812...3993643, FT 3990460...3990341, 3986780...3986626, 3986451...3986411, FT 3986106...3985965, 3981908...3981809, 3981187...3981062, FT 3980230...3980093, 3979868...3979647, 3975839...3975738, FT 3974412...3974365, 3971540...3971371, 3967011...3966787, FT 3960595...3960407) XX SQ Sequence 6204 BP; 1212 A; 2093 C; 1841 G; 1058 T; other; atggccaccc aggtggccac agcccctgcc cgtgttctgt gcgtgaaggt caacaccatt 60 ctcaaaaaaa ggtgtggctg catgtcggtg gtcatgcatc acatccgtgt cccaggcaga 120 tgtgtcctct gcagccacat gctgatagtg gacatggaca aggaaacaga aatgaaggaa 180 gagcccaaac aaagggaggc ccaggccacc ccatgtgtgg ccctcctgtc ggacacagcc 240 tatccaacaa gcagaccagg gagaggggct ctcggagcat ggacctcagg gatgtgcctc 300 ccccacgggg cacctctgcc ggccccgccc gtggcttttg ctcctgccag ctgcatgctc 360 ctgcctggag aggatgggtc cccgcaactg gaccagcgcc tggcctctcc cactggggcc 420 cacagtgcta ggagggcagc ccggcaccct cagtcacccc gccccagccc caccagagct 480 gtcaatcccg cctccatgga catgcgctgg gcacccccac ggtgggaccc agacagcagg 540 aggccctgca ccttgcttcc tccactgcac actgtggtct tcggattcac gcacagcaca 600 gcacctctca ggacttcgcc ccttgtcatg gccaaactgt cctgccacaa gtggactgag 660 cgccatcggc ggccgccccg ccttgggctg ctgggaaccc catggacagg cttccgtcac 720 agtgccaggg atgacactgc cgccaggctc acagtgacca tgtttctctc catctgcgtc 780 ctgaccccac ggccttggtt tctgagccgc actctgcccc tgggcgccct cgctgccccc 840 agcagctcgt gggaccgagg ccgtgatggt ctaggaaaca gactttatga gaaggcactc 900 tgtattgacg gaggccatgc tgcggtccaa gctgcagggc ccggatctgt ggggatggga 960 gtgctgagca ccccgccgcg catgtgtcca ctgctcctca cggcccgtag gttcccacca 1020 cagacgtggg agcaggtcta cattccagat cacatggctg ccaacacact ggtcgtggcc 1080 atgccagctc cccgcctgcc ctgtaccact cgcttccccc ccatacttat catcagcggc 1140 atcgtcaacc tgtgggtgat gatgtcctca tccagccacg ctgaccagcg tatgctgact 1200 cgtggcttct gtttaaatgc tctcccggcc gtggtgacaa gtgtcggcat ctctcgtgcg 1260 cttacctgcc gtctgtgcag cctctttggc gagatgtctc tttgcgtctt tgcacgtttt 1320 ctggccagcc tgcagaaggc acttgatgca ccattgcttc ggctgacatg tgtctcacac 1380 aagtccagac cctcccttaa tcctaaagct gtggccacca acagccacca ctggggcctt 1440 ggccagtcag gcggccgtga gctggcctgg aacaggggcc ctgcagccac tggggaacat 1500 ggggtacaca gtgccatcgg gcttcagagc cagcaggagc ctcacagcgt gcgggtgcca 1560 atccagccct ggcagctgct gcctctgtgc tcctgcaggg agttatcaga cagtcgtgtc 1620 aggatggaag cactgaggac tcagtcacgg acagtggtgc atgactcctg gtgcatgggt 1680 ttgctccacg tttgtgcaag atgctgtcca ggcccatctg tcaccgtttc catcgccaag 1740 accatcttcc tgggcagcac gggacatgag tggcactcac agcccccaag tgcctgctgg 1800 tcccttcccg tccatggcct gcgccctgtt cctgtggcca cggacttgct caggacgagc 1860 cccaactgcc tgaacctcac gctctgggaa ccgccagcca gcacacagac agacacacgg 1920 actggagtgg gcagtgggct gagggccagg cactggttca ccgcgtcatg tgtctgcaca 1980 gcctggaagg tcggagaagg agccacgccg aagccgacgg caacaaggcc acgtttcacc 2040 tctgagcccc agaggccctg ccgggtgggc atgcagaccc tgggagttgc ccaggtcgac 2100 tctgtggctg acccagcaca gcccccaatg gtgggtctgc cctggcgcct ggccctgctc 2160 acctgcccgc caatagcacc catcagagct cgacagcctg tccctgtgga tgcctggccc 2220 tgcacagccc tgcctcctgc tctgggctcc accccaacac cagcctgctc accggctgac 2280 cccactcaga acttgccagg caaacccaac accaggctgc caagagtgag agcacagtcg 2340 aatgtccaga gtgagtctgc tgcccccaca gcagggcagg ggtctctggc tgcatcaggc 2400 cccacaccca ccatagggat catccacccc gagggcacct gccccatgtc cccagagtgc 2460 aaggtggact cgtccgtggt gagcaacacc gacacccaca tgggcttccc acacgggacc 2520 ctgcaggcct tggcaccagt cggtgtcaca aggaactggc ccagcctgaa gcaggacgac 2580 ttcaaattac ggcaagatgc ggggcggccc tcctcagcag gtgactggac cctgctggcc 2640 cagctggccc aggtgacgcg ggcactctca caggcctccc tccacagccc tgtgccggcg 2700 cctggtgcca aggcggcatg tcttccttcg ccagagcgcc ttggggtcca gaggctgggg 2760 caccagagga agcacgtggc tgaggaagga ccacaacgcc gtcctggcga ttcaccctgc 2820 agaagaagtg ctcagggggg accaggtttg gaggcctcga ggtcgtctgg gtggcagcca 2880 gatgacaacg agatcctgga gctgtcgggg gagctggggc ccctccactc catcctcagt 2940 gacggccagc ccctgccagc ccagcacgcg ttctgccagg acatcacact catcatgcgc 3000 cctcatgtgc agcctggtca gcaggagccc agtcctgaac agagcagccc tggacacggg 3060 ccctccctag acaagctgga gcggcgcaga tgggcaggca tggaaggcac cgtggcccca 3120 gggacggccg tcctctcaag gggcaaaccc ctgcctctgg gtcgcaggga cctgctgtcc 3180 cagattccgt tccccgcacg gtttaaaagt gccggcatga ggctgccctg cacagagctt 3240 ggggccgcgg ctgcaagcgc cgacacgtct gcacagggct gcaccgcagc tgggagtgcc 3300 atgggcacgc ggctgaccaa gcacggggca ggggccccga ctgaagaatg gcctggaaca 3360 cagtgcccgt ggcaggccca ggggtgtgga cagagaagtg ggttggacaa gcccacgggg 3420 cctgaggcag gcatggaagc aggtgccgca ctcatggccc agcgagacag ccgcccaaac 3480 agagccgcct cccaggcctt ggcccaggga caggagggag gaaggccatt actgcaggcc 3540 ccaggtattc tggtgagccg gaggccagct gccgaggatg caggcgccag cgacacctcc 3600 agctggcggg ggctcttggc agccgcatcc ccagaactgc atcctgctcc ggcatccctg 3660 caggatggcc gcgaggcctt ggcgcttagt ggtcgggtcc acacatctgg cccagtgctc 3720 cctgtccatc cattcgtcca tgtctgcctc acaatactgg agactctgag gcctgcatcc 3780 ccaagaaatt attttcctcc ccagctttgg agcagaaagc ctggcaccct cctgagtcat 3840 gcacacgggc acacggcaca tactcagtcc gtgtctactc tgctgccgct tatggcacgt 3900 acatcctttg tcgtctccca aggagcctgg ggcagcagag tccagacaaa agcacaagat 3960 gacctttccc tggatgagga gcatggacaa cgagtccaca gttccacctt cctgtctggg 4020 gacagcagtg gggagggggt ggcatggagc acagatgacg cacgtgggca gcacgtggct 4080 ccaggggaag gacctgtgct gacagggaac cacacgcttg cgaagacgca gttccagttc 4140 tggacgagtg atgcccgcag ggtacccggt gtctcgggga cctgcttccc actctcaagg 4200 gagcgaacag atccagacag ctcacctcct ggcatgttat cagctgcaga tccagggacc 4260 tgctccaaca gcagcaaggc gacgcgctgc cctgaggacc tggagcaaac cctctggccg 4320 cagcgcatcc tccctcagcc gtccgacccc atcatctgtg ccaggagcct ggacctcacg 4380 ccatcaaggt tccacaggcc cccccagcga gagccccacc cagtgggatg cagctgccag 4440 ggagctgagc tcagctaccc gcagcccgtg gccacaatcc cctgggacct gggggtgggg 4500 atggaactcc aacagggctg gtgcaggccc tgcaggaaga tcccggggct gcccttccag 4560 tctctctccg gggcctcaga cccccagcag ccgcagcttt tgatcagctg tgggcccaca 4620 tggacagtgt ctaacagcct cgtggggccc caggctgacc ccaagctgca gagcacggct 4680 gcagcaggca tgcctccccg gcccaggaag acgtgccgag gtcgtgaggg caagcagcat 4740 tggactgcgg atctaaacgg ctcatttggg aaggggtctc tggtcgtcct tcactctcac 4800 attgtccacc tgcacatccg gacccgaggg catgggcagc gcatcctgcg aggtcctgac 4860 aaccaggata tcttgccctg cgtgtggggg caggcgcctg gtcccagcgg catgcgagct 4920 cagagtgcct ggacttggac catccgcacg ggcagccagc ctgtgtcctg ggtgctggac 4980 acaggcaggc cggtgtcaag gacaagttcc cgtagttcac ggtacttacg tcctgcagag 5040 tctgcagcca ctgacctggg ctggtccccg gcgctgctgc accagttcct gctacagatg 5100 ctcacggcat cctcacccgt gtcctgcaag gagactcaga cagatagcca agcgggagac 5160 cgtgggtggg tgcccgtcgg gcctgtgccc acaacgttcc tgccctgccg gcccctggtc 5220 tccgggggcc cctgccacgc cgactctgct gccccgctga ttccaaggac tcctgagaag 5280 gagcaagcag agcccctggt ggatgttccc ggcaagcacc cagctgctga gcagggggac 5340 aggccatcag tctcaggtcc tagggtggag gacacccggg gaaggggagc caccaggact 5400 cttgggcccc tggcaaccag ccagggattt cctcctcggt ccccgttagc ttgcccagat 5460 aaaacagcag gtctcccagg tcatcgccac ctggtgactc atgcaggagg tcgtgctccc 5520 gaccccaccc ctgtcccagg cacaggacag tcagggaaag ggggaggcga agagaaaaac 5580 cggaagctgc ccttccctgt tcttgtggaa accctcacag gtaaagaccc ggggtgcttt 5640 cctgaagatg ctaaaaccca gggtcgaggg gtccagcgtc tgcacgtcct ggacaggaga 5700 ccccattccc actgtggcca tgacacacac accaactacc gacaggggcc tcgaaccctc 5760 ataaggagtc ctggacctgg aagggccagg gtgcagagag aagggacggt gtcctgcacg 5820 ctgcggggcc atgcctgctt tcaggacaga ccagcgcgca gcaccccgag agcaacctcc 5880 ccatattgca gctttgtcat gctgttcaat aacaggcctg tgttcaataa ccaaatggga 5940 gcccagaccc tgacggctcg gaagggcttc tgcccgggtg tgaatttgct gacaaagaga 6000 cacacggcct ccccaaaaca cggccccgag atccgtaggg aaccttccgc caccaaggcc 6060 caggtcttca aggcccagtt caccttcctc agctgtaaac ctcagacagc caggtcgctc 6120 atggggcaga caggagtgtc agcacccaca gccccgggac ggccctcagg cttccccacc 6180 caagccgccg agctccacgt ctga 6204 // ID NC006583_56; SV 1; special; RNA; MAM; 6111 BP. XX AC NC006583_56; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_56; NC006583_56. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..6111 FT /organism="Canis familiaris" FT CDS 1..6111 FT /protein_id="NC006583_56" FT /db_xref="trGEN:NC006583_56" FT /translation="MKSAEEAKLAKMPACSGDSSFYKGRRPSSTVPGGTIPLV FT GPWPQSRILQGLAALGSMTGLEQDQEFDFDFLFEFNQSDEGTAAAPDGYSAHS FT PTRSLRWSNRSTSAEHYSYAPSSISSVLPPGPAHPSLPAPCHDLQTSGPGMPA FT PAASQPPGYGGAVDTGPSSYFLSSGHIRPNGAPALESPRIEITSYLGMHHSNS FT QFFHDVEVEDVLPSSKRPSSTATLNLPNLEAYRDPSCLSPASSLSSRSCNSEA FT SSYESNFSYPYASPQTSPWQSPCVSPKTTDPEEAFPRGLGACGLLSSPRHSPS FT TSPRTSITEESWLGARTSRPSSPCNKRKYGLNGRQLSCSPHHSPTPSPHSSPR FT VSITDDTWLGNSTQYTSSAIVAAINALTTDNSLELDGVPVKARKTAPDHCPSV FT ALKVEPAGEDLGTTPPTAEFLPEEFTSFQHIRKGAFCDQYLSVPQHPYQWARP FT RSPTSFARIFIRHENVPPVAGCSHGVSAVPPSPGTHTQLHTCFCVLSSVVDSA FT FDFPALFVGGANGSSSRKSAPPADAVPVMTAGVFMAHEGRGHPYQDPLDSGVK FT TQVGPELLLFQVGVCILVKRARLRGGSASHLLSAPYGCVDLESEHLHVHDLSV FT AVLSACRPGCSTSSLWGMGGSAQGSGGQFWMCRLLPHGGQPVEQCRVPPERPP FT PATQPRLGPDPWFPTACRVCTLHALAEARGDNTQGASTCCTSAAPHQRHGDEP FT AHVTDVLWRHCLPCSHGLVQEPGGEPRSLVLRGLGTEGLGWGRGERTVDRGPA FT TPPLRSTARLPSLPALDWQLPSRSGPYELRIEVQPKPHHRAHYETEGSRGAVK FT ASAGGHPSVQNRAPRTWSLDATLSEVRSRSNSNPTPVSPVAQCGRPAEGADSC FT STGLPLPLQPCPGRWSTEHTLFYRRHLVLHPCCLAHLEHMPGTTDICHQLYVN FT SQEHVPLKQSQRDAPEPEPEPLHCMCPCNQDVVTRESSQECCHLRTCGKGSSG FT CWLLATRLQAGSWPPGSFEALVAPGPAGSSGSGVRATVCCRGKTSGQGAREKV FT PYPGGAHLHGYLENEPLTLQLFIGTADDRLLRPHAFYQVHRITGKTVSTTSHE FT AILSNTKVLEIPLLPENNMRAIVDCAGILKLRNSDIELRKGETDIGRKNTRVR FT LVFRVHIPQPNGRTLSLQVASNPIECSQRSAQELPLVEKQSAASCPVLGGKKM FT VLSGHNFLQDSKVIFVEKAPVDVLEKTLKSIQVKSAAVLQGSDAAVGLLGSSV FT FTLLLGRCQGGMSVERPPMCTPPWPPGVLVCTRRCQQPAAMRDGHHIWETEAK FT LDRDLCKPVCGPPAHRWPWTDVWSPSSPPGRGQMCGPLAHPLTMDSSPPGHGQ FT TCGPLAHPLAVDSTSGLARGGVGGVPAEAPSQPSSPAPAGPGCRAAHASGELS FT GATNSLVVEIPPFRNQRITSPVQVSFYVCNGKRKRSQYQHFTYLPANGSVLGD FT AGGRRGGRGGETGGVHAEGDADGILSSGAWSHQLSRSCSATQHQNQECIPFKA FT VLAAMHGPSCPAALSPLGLWLRTHGNPEESRTHGTICVMLGSAAQTYGPQVCI FT LELGHLQRAPTIKTEPTDDYEPALPCGPASQGLSPLPKSCYSQQLAMPPDPGS FT CLVPGFPPCPQRSTVVSPPPSAGPKMHDLSSTTYSKGMASPGHGHLGLQRPAG FT GLLAAQETPTPAGVHAGPPQQPPPALLRPQSCSPTRPSEMGPQQHRLPKAPRS FT ESAAPRPVPPPEVREDSNHSLAPIPVTVKREPQELDQLYLDDAWTLVQGGDAP FT QCWLGSGVTSLLVPGCDSFSSACPATCHPVLALPPQTSSTPTFTGYCPPPQGD FT GPRGTAAGFCVHLAETAVCVQGHKSFQGQCASRGRTERQTFGSDILVFVYMNL FT SVTQKPTEAPLRAFCWNWFPEGTPDKTGAPSVTSLTPENASSEKLHFRTFPLT FT CRSWTRSKEGTDDNVWELLRAVTILVVATAIGRLPLRPRGPDLWTTAHVPPLQ FT SQGQGNSIAARPKPCGSFLKVCFEILHCFQKPRIQK" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '-' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..19 FT /number=1 FT /note="FIRST EXON; p-value: 0.118." FT exon 20..167 FT /number=2 FT /note="INTERNAL EXON; p-value: 0.210." FT exon 168..256 FT /number=3 FT /note="INTERNAL EXON; p-value: 0.584." FT exon 257..319 FT /number=4 FT /note="INTERNAL EXON; p-value: 0.046." FT exon 320..1412 FT /number=5 FT /note="INTERNAL EXON; p-value: 0.099." FT exon 1413..1614 FT /number=6 FT /note="INTERNAL EXON; p-value: 0.122." FT exon 1615..1716 FT /number=7 FT /note="INTERNAL EXON; p-value: 0.122." FT exon 1717..1770 FT /number=8 FT /note="INTERNAL EXON; p-value: 0.047." FT exon 1771..2124 FT /number=9 FT /note="INTERNAL EXON; p-value: 0.054." FT exon 2125..2372 FT /number=10 FT /note="INTERNAL EXON; p-value: 0.017." FT exon 2373..2532 FT /number=11 FT /note="INTERNAL EXON; p-value: 0.197." FT exon 2533..2763 FT /number=12 FT /note="INTERNAL EXON; p-value: 0.210." FT exon 2764..2972 FT /number=13 FT /note="INTERNAL EXON; p-value: 0.009." FT exon 2973..3107 FT /number=14 FT /note="INTERNAL EXON; p-value: 0.655." FT exon 3108..3159 FT /number=15 FT /note="INTERNAL EXON; p-value: 0.708." FT exon 3160..3362 FT /number=16 FT /note="INTERNAL EXON; p-value: 0.994." FT exon 3363..3535 FT /number=17 FT /note="INTERNAL EXON; p-value: 0.997." FT exon 3536..3676 FT /number=18 FT /note="INTERNAL EXON; p-value: 0.956." FT exon 3677..3809 FT /number=19 FT /note="INTERNAL EXON; p-value: 0.717." FT exon 3810..3901 FT /number=20 FT /note="INTERNAL EXON; p-value: 0.252." FT exon 3902..3957 FT /number=21 FT /note="INTERNAL EXON; p-value: 0.632." FT exon 3958..4070 FT /number=22 FT /note="INTERNAL EXON; p-value: 0.148." FT exon 4071..4130 FT /number=23 FT /note="INTERNAL EXON; p-value: 0.367." FT exon 4131..4260 FT /number=24 FT /note="INTERNAL EXON; p-value: 0.347." FT exon 4261..4393 FT /number=25 FT /note="INTERNAL EXON; p-value: 0.407." FT exon 4394..4520 FT /number=26 FT /note="INTERNAL EXON; p-value: 0.013." FT exon 4521..4656 FT /number=27 FT /note="INTERNAL EXON; p-value: 0.012." FT exon 4657..4753 FT /number=28 FT /note="INTERNAL EXON; p-value: 0.000." FT exon 4754..5136 FT /number=29 FT /note="INTERNAL EXON; p-value: 0.566." FT exon 5137..5332 FT /number=30 FT /note="INTERNAL EXON; p-value: 0.435." FT exon 5333..5518 FT /number=31 FT /note="INTERNAL EXON; p-value: 0.489." FT exon 5519..5706 FT /number=32 FT /note="INTERNAL EXON; p-value: 0.500." FT exon 5707..5858 FT /number=33 FT /note="INTERNAL EXON; p-value: 0.083." FT exon 5859..5965 FT /number=34 FT /note="INTERNAL EXON; p-value: 0.068." FT exon 5966..6111 FT /number=35 FT /note="LAST EXON; p-value: 0.247." FT CONTIG join(NC_006583:4124857...4124839, 4123936...4123789, FT 4120798...4120710, 4114251...4114189, 4112058...4110966, FT 4110183...4109982, 4109261...4109160, 4106684...4106631, FT 4106232...4105879, 4101461...4101214, 4100855...4100696, FT 4096179...4095949, 4095887...4095679, 4086883...4086749, FT 4086532...4086481, 4085990...4085788, 4085240...4085068, FT 4083091...4082951, 4081157...4081025, 4076889...4076798, FT 4073891...4073836, 4072306...4072194, 4071762...4071703, FT 4068359...4068230, 4068145...4068013, 4062085...4061959, FT 4061921...4061786, 4059974...4059878, 4056504...4056122, FT 4056010...4055815, 4054125...4053940, 4050413...4050226, FT 4043675...4043524, 4035795...4035689, 4034923...4034778) XX SQ Sequence 6111 BP; 1144 A; 2100 C; 1794 G; 1073 T; other; atgaagtcgg cggaggaagc aaagttggca aagatgccag cgtgtagtgg ggattcctct 60 ttttataagg gcagacgtcc ttccagcacc gtccccggtg gcaccatccc cttagtgggc 120 ccatggccac agagccgcat cctccaagga ctggcagctt tggggagcat gacggggctg 180 gagcaggacc aggagttcga cttcgacttc cttttcgagt ttaaccagag cgacgagggc 240 accgccgctg ccccagatgg gtacagtgcg cactcaccga ctcgctccct gcgctggtcg 300 aacaggtcta cctccgcaga gcactacagt tatgcaccgt cgagcatcag ctctgttctg 360 cctcctggcc cggctcaccc atcactgcca gctccgtgcc acgacctgca gacctcgggc 420 ccgggcatgc cagctcctgc ggccagccag cccccgggct atggtggggc tgtggacacc 480 gggccctcca gctacttcct gtcctccggc cacatccggc ccaatggggc ccctgccctg 540 gagagtcctc gcatcgagat cacctcgtac ctgggcatgc accacagtaa cagccagttc 600 ttccacgacg tggaggtgga agacgtcctt cccagctcca agcggccctc ctccacagcc 660 accctgaacc tgcccaacct ggaggcctac cgggacccct cgtgcctcag cccggccagc 720 agcctgtcct cacgcagctg caactcagag gcctcatcct atgagtctaa cttctcctac 780 ccctacgcgt ccccacagac gtccccatgg cagtcgccct gtgtgtcccc caagaccacg 840 gaccctgagg aggctttccc ccggggcctg ggggcctgcg gcctgctcag ctcccccaga 900 cactcgccct ccacctcgcc ccgcaccagc atcacggagg agagctggtt gggggcccgc 960 acgtcccggc cctcgtcccc ctgcaacaag aggaagtacg gcctcaacgg ccggcagctg 1020 tcctgctccc cacaccactc acccacgccg tccccgcaca gctcaccacg ggtcagcatc 1080 actgatgaca cctggctggg caacagcacg cagtacacca gctcggccat cgtggctgcc 1140 atcaacgccc tcaccaccga caacagcctg gagctggacg gcgtccctgt gaaggcacgc 1200 aagaccgccc cagaccactg cccctccgtg gccctcaaag tggagccagc tggtgaggat 1260 ctggggacca cgccgcccac agccgagttc ctgcccgaag agttcacatc tttccaacat 1320 atccgcaagg gtgccttctg tgaccagtac ctgtcggtgc cgcagcaccc ataccagtgg 1380 gccaggccca ggtccccaac gtcatttgcc aggattttta tcaggcatga aaatgtgcct 1440 cccgtggcag ggtgcagcca tggcgtgtcg gctgtgcccc cctcccccgg gacgcacacg 1500 cagctgcaca catgcttctg tgtgctgtcg agtgtcgtgg actcggcatt tgatttcccg 1560 gccctttttg ttggtggtgc caatggaagc agctccagga aatcagcccc accggctgac 1620 gcagtgccgg ttatgactgc cggcgttttc atggcccatg agggccgtgg tcacccatac 1680 caggaccccc tggactccgg ggtcaagaca caggttggcc ccgagctcct cctcttccag 1740 gtgggggtgt gcattctcgt caagagggcg cgcctgcgtg gaggctcggc ttcacacctc 1800 ctttctgctc cgtacggctg cgtggacttg gagtctgagc acctgcatgt ccatgacctg 1860 tctgtggcag tgctgtctgc atgcaggcct gggtgctcca caagctcact gtgggggatg 1920 ggaggcagcg ctcagggctc cggagggcag ttctggatgt gcaggctcct gccccatggg 1980 ggacagccgg tggagcagtg cagggtcccc ccggaacgtc cccctccggc cacgcagccc 2040 cgcctcggcc ctgacccctg gttccccacc gcctgccgcg tctgcacact ccacgccctg 2100 gcagaggccc gaggtgacaa cacgcagggc gccagcacgt gctgcacatc ggccgcccct 2160 caccagcgcc atggtgatga gccagctcat gtgactgacg tcctgtggcg ccattgcctt 2220 ccgtgttccc acggccttgt ccaggagcct ggcggcgagc cgcgctcgct tgtcttgcgg 2280 ggtctgggga ctgaggggct gggctggggt cgtggcgagc gcactgtgga caggggcccc 2340 gccacgcccc cactgcgttc cacagcccgc ctcccgtctc tccctgccct ggactggcag 2400 ctgccgtcgc gctcgggacc ctacgagctg aggattgaag tgcagcccaa gccccaccac 2460 agagcccact atgagacgga gggcagccgg ggggccgtga aggcatcggc tggaggacac 2520 cccagcgtgc agaacagggc ccctcgcacg tggagcctag atgccacatt gtcggaggtt 2580 agaagcagat ctaacagcaa cccaaccccg gtcagccccg tggcccagtg tggcagacct 2640 gctgagggtg cagattcgtg ctccacaggg ctgcctctac ccctgcagcc gtgtccgggc 2700 aggtggtcca ccgagcacac gctcttctat cggcgccacc ttgtcctgca cccctgctgc 2760 ctggcacacc tggagcacat gcccggcacc actgacatat gtcatcagct ctatgtcaac 2820 agccaagagc atgtccccct gaagcaaagc cagagagacg ccccggagcc ggagccggag 2880 ccactccact gcatgtgtcc ctgcaaccaa gacgtcgtca cgagggaatc atcgcaggag 2940 tgttgccatc tccggacatg tggcaaaggc tcgtcagggt gctggctgct ggccacacga 3000 ctgcaggcag gcagctggcc tccaggctcc tttgaggcac tggtagcccc cggccccgcg 3060 gggtcatctg gcagcggcgt tagagcaact gtctgttgtc gaggaaagac atcaggacag 3120 ggtgcaaggg agaaagtacc ctatcctggg ggtgcacatc ttcacggcta cttggagaat 3180 gaaccgctca cactacagct gttcatcggg acggccgacg accgcctgct gagaccccac 3240 gccttctacc aggtgcaccg gatcacaggc aagactgtct ccactaccag tcatgaagcc 3300 atcctctcca acaccaaagt cctggaaatc ccactgctgc ctgagaacaa catgcgagcc 3360 atcgtggact gtgccgggat tctgaagctc cgaaactctg acatcgagct gcggaaaggg 3420 gagacagaca ttgggaggaa gaacaccagg gtgaggctgg tcttccgagt ccacatcccg 3480 cagcccaacg gccggacgct gtccctgcag gtggcttcca accccattga gtgctcccag 3540 cggtcggccc aggagctgcc cctcgtggag aagcagagcg cggccagctg ccccgtcctt 3600 ggcgggaaga agatggtcct atctggacac aactttctgc aagactccaa agtcattttt 3660 gtggagaaag caccagttga tgttttggag aaaacactaa agtcaattca ggttaaaagc 3720 gcagctgtcc tgcagggctc tgatgcagcc gttggtctct tgggaagttc agtcttcacg 3780 ctgctgctgg gccggtgcca gggtggcatg agtgtggagc ggccccccat gtgcaccccg 3840 ccgtggcctc ctggggtcct ggtgtgcacc cggcggtgtc agcagccggc ggccatgcgg 3900 gacggtcacc acatctggga gacagaggcc aagctggata gagacctatg taagccggtg 3960 tgtggtcccc cagctcatcg ctggccatgg acagatgtgt ggtcccctag ctcaccccct 4020 ggccgtggac agatgtgtgg tcccttagct caccccctga ccatggacag ctcaccccct 4080 ggccatggac agacctgtgg gcccctagct caccccctgg ctgtggacag caccagcggc 4140 ttggctcggg gaggtgtcgg tggtgtcccc gctgaagccc caagccagcc cagctcccct 4200 gcgcccgccg gccctgggtg ccgggctgcc cacgcctcgg gcgagctctc tggggccacc 4260 aactcgctgg tggtcgagat cccgcctttt cgcaatcaga gaataaccag cccggtccaa 4320 gtcagtttct atgtctgcaa cgggaaaaga aagaggagcc agtaccagca cttcacctac 4380 cttcctgcga acgggagtgt gctgggggac gctgggggcc ggcggggtgg ccggggcggg 4440 gagaccgggg gcgtgcatgc agaaggtgac gcagatggca tcctgtcctc gggagcctgg 4500 tcccaccagc tgtccaggag ctgctcagcc acccaacacc agaaccagga atgcatcccc 4560 ttcaaggcag ttttggcagc catgcacggc ccgtcctgcc cggcggcact gagcccactt 4620 gggttgtggc tccgcacaca tgggaaccca gaggagagca ggacacacgg gaccatctgt 4680 gtgatgcttg gcagcgcggc ccagacctac ggaccccagg tctgcatcct ggagcttgga 4740 cacctccaga gggctccaac cataaaaaca gagcccaccg atgattatga gcccgctctg 4800 ccctgtggac cagcgagcca gggcctgagc ccgctcccca agtcgtgcta cagccagcag 4860 ctggccatgc cgcctgaccc gggctcctgc ctggtgcccg gcttcccacc ctgtccacag 4920 aggagcaccg tggtgtcgcc gccgcccagc gctggcccga agatgcacga cctctcttcc 4980 accacctaca gcaagggcat ggccagcccc ggccacgggc accttggact tcagcgaccg 5040 gctggagggc tcctcgctgc gcaggagaca ccgacacctg cgggcgtgca cgctgggccc 5100 ccacagcagc cccccccggc cctgctgcga ccacagtcct gcagccccac ccgcccatct 5160 gagatgggcc cgcagcagca ccgactgccg aaggctccga ggagcgagtc tgcagccccc 5220 cggcctgtgc cgccgcccga ggtgcgtgag gacagtaatc atagtctggc ccccattccc 5280 gtaacggtca agcgagagcc tcaggagctg gaccagctgt acctggacga cgcgtggact 5340 cttgtccaag ggggtgatgc accccagtgc tggctgggct ctggggtcac ctccctgctg 5400 gtccctggct gcgactcctt cagcagtgcc tgccctgcca cctgccaccc agtcctagcg 5460 ctcccacctc agacgtcatc aacacccact ttcactggct actgcccccc cccccagggt 5520 gacgggcccc gagggactgc ggcaggcttc tgtgtgcacc tcgctgagac agcagtctgc 5580 gtgcaaggac acaagagctt ccagggacag tgtgcttctc ggggtcggac agagaggcaa 5640 acatttggct cagatatttt agtctttgtc tacatgaacc tgagtgtgac ccagaaacca 5700 acagaggccc ctctcagagc tttctgctgg aactggtttc cagaaggaac cccagataag 5760 acaggggcac catctgtgac ctcgctgaca cctgagaatg cttcctctga gaaactgcac 5820 tttaggacat ttcctcttac ttgccgttcc tggaccagga gtaaggaagg cacagacgac 5880 aatgtctggg agctgctgag agcggtgaca attcttgtgg ttgctacagc aataggaaga 5940 ctgcctctga ggccgagagg tcccgacctg tggacaaccg cacacgtgcc cccacttcag 6000 agccaggggc aggggaacag catcgctgcc aggcccaagc cgtgcggctc attccttaaa 6060 gtttgctttg agatcctcca ctgctttcag aaaccaagaa ttcagaaatg a 6111 // ID NC006583_57; SV 1; special; RNA; MAM; 1098 BP. XX AC NC006583_57; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_57; NC006583_57. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..1098 FT /organism="Canis familiaris" FT CDS 1..1098 FT /protein_id="NC006583_57" FT /db_xref="trGEN:NC006583_57" FT /translation="MAGHRMGPCFGVGEGVLEVSASGRRGGAGSVASASLLSS FT PTVGPWGSSCKGGGAARGHTQSGPPAWALIIAWCVDSREHLSFLGVPGVRTCV FT FTCVLRAAIHKSLLLKAAHCAGCGCHPGCPLICGCEHGMWGTGAPRPPTPGFQ FT PLEDTLQSGAELGWPPHTYPLSTTLYPTATCTKLLPATAGPPTGLSRCATTTP FT THSSPGSTTVSWAEPCAGCVLSPQPRDAAVSGNRNLAGGFREEEAVLARVALT FT QLSSLRGRRDTDMRGVDMHEDGVTRGATKTRRPRAPERQAAGSSCPRGQDRRC FT MYTDGLATVGLLQSLNLDIPAQLTATRSPQLSWDAEDPPGQNLTVLDEVWAVQ FT SDLRGHRY" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '+' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..44 FT /number=1 FT /note="FIRST EXON; p-value: 0.251." FT exon 45..303 FT /number=2 FT /note="INTERNAL EXON; p-value: 0.480." FT exon 304..480 FT /number=3 FT /note="INTERNAL EXON; p-value: 0.709." FT exon 481..609 FT /number=4 FT /note="INTERNAL EXON; p-value: 0.223." FT exon 610..896 FT /number=5 FT /note="INTERNAL EXON; p-value: 0.227." FT exon 897..1030 FT /number=6 FT /note="INTERNAL EXON; p-value: 0.204." FT exon 1031..1098 FT /number=7 FT /note="LAST EXON; p-value: 0.652." FT CONTIG join(NC_006583:4132520...4132563, 4132857...4133115, FT 4133951...4134127, 4134259...4134387, 4136342...4136628, FT 4137413...4137546, 4138201...4138268) XX SQ Sequence 1098 BP; 201 A; 348 C; 370 G; 179 T; other; atggctggac acaggatggg gccctgcttc ggggtgggcg aaggggtgtt agaggtgtcg 60 gcgagcggta ggcgaggggg cgcgggctcc gtggcctcag cttccctgct cagcagcccg 120 acagtagggc cctggggctc cagctgcaag gggggggggg ctgcccgggg tcacacgcag 180 tctggtccac cggcctgggc cctcatcatc gcctggtgtg tggacagtcg ggaacacctg 240 tcgtttctgg gggtacctgg ggttcgcacc tgcgtcttca catgtgttct cagggcagca 300 atccacaaat ccctcctgct caaggcggca cactgtgctg gatgtggatg ccaccctggc 360 tgcccgctca tctgtggctg tgagcacgga atgtggggca cgggggcccc aagaccccca 420 acccccggct ttcagcccct ggaggacacg ctgcagtcag gtgctgagct cgggtggccc 480 cctcacacct acccgctcag cacgaccctg tacccaacgg ccacctgcac caagcttctc 540 cctgcgacag caggtccccc gacaggactt tcccgctgtg ctaccaccac acccacccat 600 tcgtcccctg gtagcaccac ggtgtcctgg gccgaaccct gcgcaggctg cgtgctgtcc 660 ccacaacctc gggacgcagc ggtatctgga aataggaacc tggcaggtgg atttagggaa 720 gaggaggctg tcctagcacg ggtggccctc acacaactgt cctcgttgag ggggaggagg 780 gacacggaca tgcggggagt cgacatgcac gaggacggag tcacgcgtgg ggccacgaag 840 acaagaaggc cccgggcacc agagcgccaa gcagcaggaa gcagctgccc ccgagggcaa 900 gataggcgct gtatgtatac agatggcctg gccacggtgg ggcttcttca gtccttgaac 960 ctggacatcc cagcgcagct gacagccacg aggagcccgc agctcagctg ggacgcggag 1020 gacccgccgg gacagaacct gacggtcctg gatgaagtct gggctgtgca gagtgaccta 1080 cgtggtcacc ggtactga 1098 // ID NC006583_58; SV 1; special; RNA; MAM; 1257 BP. XX AC NC006583_58; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_58; NC006583_58. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..1257 FT /organism="Canis familiaris" FT CDS 1..1257 FT /protein_id="NC006583_58" FT /db_xref="trGEN:NC006583_58" FT /translation="MKLDHSLAPDTKINSKWMKDLNVRQDSIKILEENTGNTL FT FQLGHSNFLQDTSTKAKETKAKMNYWDFIKIRSFCTAKETVNKTQRQPTEWEK FT IFANDVSDKGLVSKIYKELIKLNTKETNNPIMKWAKDMKRNLTEEDIDMANMH FT MRRCSTSLAIREIQIKTTMRSHLTPVRMGKINKAGNHKCWRGCGEKGTLLHCW FT WECELVQPLWKTVWRFLKELKIDLPYDPAIALLGIYPKDTDAMKCRDTCTPMF FT LAAMSTIAKLWKEPRCPTKDEWIKKMWFMYTMEYSSAIRNDKYPPFASMWMEL FT EGGILMYGALLLFESEFVHVVAISFTALILTELLMVALTVRTWHWLMAVAEVL FT SLGCYVASLAFLNEYFDVAFITTVTFVWKVSAITVVSCLPLYVLKYLKRKLSP FT PSYSKLTS" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '-' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..916 FT /number=1 FT /note="FIRST EXON; p-value: 0.062." FT exon 917..1120 FT /number=2 FT /note="INTERNAL EXON; p-value: 0.969." FT exon 1121..1257 FT /number=3 FT /note="LAST EXON; p-value: 0.487." FT CONTIG join(NC_006583:4149449...4148534, 4143943...4143740, FT 4141152...4141016) XX SQ Sequence 1257 BP; 410 A; 295 C; 283 G; 269 T; other; atgaaactag accactctct tgcaccagac acaaagataa actcaaaatg gatgaaagat 60 ctaaatgtga gacaagattc catcaaaatc ctagaggaga acacaggcaa cacccttttt 120 caactcggcc atagtaactt cttgcaagat acatccacga aggcaaaaga aacaaaagca 180 aaaatgaact attgggactt catcaagata agaagctttt gcacagcaaa ggaaacagtc 240 aacaaaactc aaagacaacc tacagaatgg gagaagatat ttgcaaatga cgtatcagat 300 aaagggctag tatccaagat ctataaagaa cttattaaac tcaacaccaa agaaacaaac 360 aatccaatca tgaaatgggc aaaagacatg aagagaaatc tcacagagga agacatagac 420 atggccaaca tgcacatgag aagatgctcc acatcacttg ccatcaggga aatacaaatc 480 aaaaccacaa tgagatccca cctcacacca gtgagaatgg ggaaaattaa caaggcagga 540 aaccacaagt gttggagagg atgcggagaa aagggaaccc tcttacactg ttggtgggaa 600 tgtgaactgg tgcagccact ctggaaaact gtgtggaggt tcctcaaaga gttaaaaata 660 gacctgccct acgacccagc aattgcactg ctggggattt accccaaaga tactgatgca 720 atgaaatgcc gggacacctg caccccgatg tttctagcag caatgtccac aatagccaaa 780 ctgtggaagg agcctcggtg tccaacgaaa gatgaatgga taaagaagat gtggtttatg 840 tatacaatgg aatattcctc agccattaga aacgacaaat acccaccatt tgcttcaatg 900 tggatggaac tggagggcgg catcctcatg tacggggcct tgcttctgtt cgagtctgag 960 tttgtgcatg tggtggccat ctccttcacg gccctcatcc tcacggagct gctcatggtg 1020 gccctgaccg tcaggacgtg gcactggctg atggcagtgg ctgaggtcct cagcctgggc 1080 tgctatgtgg cctcactcgc ttttctaaat gagtattttg atgttgcctt catcacgacc 1140 gtgacctttg tgtggaaagt gtcagccatc accgtggtca gctgtctgcc actctacgtc 1200 ctaaagtact tgaagcggaa gctatccccg cccagctact ccaagctcac gtcctag 1257 // ID NC006583_59; SV 1; special; RNA; MAM; 2550 BP. XX AC NC006583_59; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_59; NC006583_59. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..2550 FT /organism="Canis familiaris" FT CDS 1..2550 FT /protein_id="NC006583_59" FT /db_xref="trGEN:NC006583_59" FT /translation="MDTYRVPAAGTRDRQIFVPRNSLGCCVTVQHIVQKAVLS FT VLSQKVHVGSRGEMTPAVMTAPSEKHLGAVWSKVLLLVGLRVNLDMGKAAYGW FT MIMKDESIPGTVVRTSTIPEELGRLVYLLTDKTASVTRGDTCASAADQCENVH FT CVISDNKTKLSITQRKPLNCQAGPNIPVEMQGPQSGVNSFGNRGTLTQNEMVF FT KRLHLGTVSYGADTMDEIQNHLRNPYSQQMQSQASGNNTSSTLPRKAQSSAPK FT VRKSVSSRVHEAVKAIALCHNVTPVYEPRAGMTGEAEYTEADQDFSDGNRTYQ FT AASPDEGSCPSCGPICSLKAACDHPDMSRSRGAKSLSACPREPQVALVQWTES FT VGLTLVSRDLTSMQLRTPSGQILTYSILQMFPFTSESKRMGVIVRDESTTEIM FT FYMKGADVAMSSIVQYNDWLEEECGNMAREGLRTLVVAKRALTEEQYQDFESR FT YSQAKLSIHDRALKVAAVVESLEREMELLCLTGVEDQLQADVRPTLEMLRNAG FT IKIWMLTGDKLETATCIAKSSHLVSRTQDIHIFRPVTNRGEAHLELNAFRRKH FT DCALVISGDSLEGINPMFAGAGGNKAASASPVQATLAMVMVRVCLKYYEHELV FT ELACQCPAVVCCRCSPTQKAHIVKLLQQHAGRRTCAIGDGGNDVSMIQAADCG FT IGIEGKEGRQASLAADFSITQFKHIGRLLMVHGRSSYKRSAALGQFVMHRGLI FT ISTMQAVFSSVFYFASVPLYQGFLMVGGLNQHPAVFQPLFPVDQAQQLNRPGR FT LPERAAVHSRVAGAGPSRYATLYTMFPVFSLVLDQDVKPEMAMLYPELYKDLT FT KVWMRAGLHVRWAIF" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '-' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..70 FT /number=1 FT /note="FIRST EXON; p-value: 0.407." FT exon 71..233 FT /number=2 FT /note="INTERNAL EXON; p-value: 0.098." FT exon 234..376 FT /number=3 FT /note="INTERNAL EXON; p-value: 0.829." FT exon 377..488 FT /number=4 FT /note="INTERNAL EXON; p-value: 0.326." FT exon 489..565 FT /number=5 FT /note="INTERNAL EXON; p-value: 0.638." FT exon 566..678 FT /number=6 FT /note="INTERNAL EXON; p-value: 0.802." FT exon 679..930 FT /number=7 FT /note="INTERNAL EXON; p-value: 0.577." FT exon 931..1044 FT /number=8 FT /note="INTERNAL EXON; p-value: 0.378." FT exon 1045..1206 FT /number=9 FT /note="INTERNAL EXON; p-value: 0.971." FT exon 1207..1299 FT /number=10 FT /note="INTERNAL EXON; p-value: 0.992." FT exon 1300..1383 FT /number=11 FT /note="INTERNAL EXON; p-value: 0.977." FT exon 1384..1554 FT /number=12 FT /note="INTERNAL EXON; p-value: 0.631." FT exon 1555..1653 FT /number=13 FT /note="INTERNAL EXON; p-value: 0.965." FT exon 1654..1743 FT /number=14 FT /note="INTERNAL EXON; p-value: 0.731." FT exon 1744..1774 FT /number=15 FT /note="INTERNAL EXON; p-value: 0.678." FT exon 1775..1833 FT /number=16 FT /note="INTERNAL EXON; p-value: 0.745." FT exon 1834..1978 FT /number=17 FT /note="INTERNAL EXON; p-value: 0.947." FT exon 1979..2043 FT /number=18 FT /note="INTERNAL EXON; p-value: 0.999." FT exon 2044..2199 FT /number=19 FT /note="INTERNAL EXON; p-value: 0.958." FT exon 2200..2264 FT /number=20 FT /note="INTERNAL EXON; p-value: 0.832." FT exon 2265..2396 FT /number=21 FT /note="INTERNAL EXON; p-value: 0.652." FT exon 2397..2550 FT /number=22 FT /note="LAST EXON; p-value: 0.439." FT CONTIG join(NC_006583:4212878...4212809, 4211478...4211316, FT 4203080...4202938, 4200286...4200175, 4195827...4195751, FT 4189338...4189226, 4186311...4186060, 4184675...4184562, FT 4171047...4170886, 4170205...4170113, 4166064...4165981, FT 4165771...4165601, 4163422...4163324, 4161799...4161710, FT 4161047...4161017, 4159825...4159767, 4159475...4159331, FT 4159143...4159079, 4158393...4158238, 4158115...4158051, FT 4156895...4156764, 4153572...4153419) XX SQ Sequence 2550 BP; 591 A; 698 C; 777 G; 484 T; other; atggacacat accgggtgcc agcagcgggc actagggaca gacagatctt tgttcccaga 60 aactccctgg ggtgctgtgt gacagtccag cacatcgtcc agaaagctgt cctgtcagtg 120 ctgagtcaga aggtgcatgt gggcagtaga ggtgaaatga caccggcagt gatgactgcc 180 ccctctgaga agcacttggg cgccgtctgg tctaaggtgc tgctgttggt gggtttgcga 240 gtgaacttgg acatgggcaa agccgcgtac gggtggatga tcatgaagga tgagagcatc 300 cccggcacag tcgtgcggac cagcaccatc ccagaggagc tggggcgcct ggtgtatttg 360 ctgactgaca aaacagcctc tgttacccgg ggggacacat gtgcatctgc agcagaccaa 420 tgtgaaaatg ttcactgtgt catctcagac aacaaaacca aactgagcat aactcagaga 480 aagccactaa actgccaagc tggccctaac attcctgtgg aaatgcaggg gccccagagt 540 ggtgtcaaca gttttgggaa cagaggaacc ctcacccaga acgagatggt gtttaagcgg 600 ctgcacctgg ggaccgtgtc ctacggagca gacacaatgg acgagatcca gaaccacctc 660 aggaacccat actcacagca gatgcagtct caagctagcg gaaacaatac cagttcaacg 720 ctacctagaa aagcccaatc ttcagctcct aaagttagaa aaagtgttag cagtcgtgtc 780 catgaagccg tgaaggccat tgcactgtgc cacaacgtga cccctgtgta tgagcctcga 840 gctggcatga ctggggaggc cgagtacacc gaggcggacc aggacttcag tgacggaaac 900 cgcacctacc aggctgccag tcctgatgag gggagctgcc catcatgcgg gcctatttgt 960 tccttgaaag cagcttgcga ccatcctgac atgtctcgtt ccagaggcgc caagtctttg 1020 tcggcctgcc ccagggagcc gcaggtggcc ctggtgcagt ggactgagag tgtcggcctc 1080 accctggtca gcagggacct cacctccatg cagctgagga ctcccagcgg ccagatcctg 1140 acctacagca tcctacagat gttccctttc acctcggaga gcaagcggat gggggtcatc 1200 gtccgggacg agtccaccac agagatcatg ttctacatga aaggggccga cgtggccatg 1260 tcctccatcg tgcagtacaa cgactggctg gaagaggagt gtggaaacat ggcccgggaa 1320 ggtctgcgca ctctcgtggt ggccaagagg gcgttgacgg aagaacagta ccaggacttc 1380 gagagccgct acagtcaggc caagctgagc atccacgaca gggcgctcaa ggtggcagcg 1440 gtggtagaga gcctggaacg ggaaatggag ctgctgtgcc tcacgggggt agaggaccag 1500 ctgcaggcgg acgtgaggcc caccctggag atgctacgca atgccggcat caagatatgg 1560 atgctaacgg gcgataaact cgagaccgcc acttgcatcg ccaaaagctc acatttggtg 1620 tctagaacac aagacattca cattttcaga ccagtaacca accggggaga ggcccacttg 1680 gagctgaacg cctttcgaag aaaacacgat tgtgcactgg tcatctcggg ggactctctg 1740 gaggggataa accccatgtt tgctggggca ggaggcaaca aggcagcatc tgcaagcccc 1800 gtgcaagcca cgctggccat ggtgatggtc agggtgtgtc tgaagtacta tgagcatgaa 1860 ctggtggagc tggcctgcca gtgccctgcc gtggtgtgct gccgctgctc acccacccag 1920 aaagcccata ttgtgaagct gctgcagcag cacgcaggga gacgcacgtg cgccatcggt 1980 gatggaggga acgacgtgag catgatccag gcggcagact gtgggattgg gatcgaaggg 2040 aaggagggca ggcaggcttc cctggctgcg gacttctcca tcacgcaatt caagcacatc 2100 ggccggctgc tgatggtgca cgggcggagc agctacaaga ggtcggcagc gcttggccag 2160 ttcgtcatgc atcgaggcct catcatctcc acaatgcagg ccgtgttttc ttctgtcttc 2220 tacttcgcat ctgtccctct gtatcaggga ttcctcatgg tgggggggct caaccagcac 2280 ccagctgtgt ttcagcctct gttcccagtg gaccaggcac agcagctcaa caggccgggg 2340 cggctccctg agagggcagc cgtgcattcc agggtagctg gtgccgggcc cagcaggtat 2400 gcgaccctgt acaccatgtt cccagtgttc tcgctggtgc tggaccagga cgtgaagcca 2460 gagatggcca tgctctatcc agagctctac aaggacctca ccaaggtatg gatgcgggcc 2520 gggctgcatg tccgctgggc catattttag 2550 // ID NC006583_60; SV 1; special; RNA; MAM; 285 BP. XX AC NC006583_60; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_60; NC006583_60. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..285 FT /organism="Canis familiaris" FT CDS 1..285 FT /protein_id="NC006583_60" FT /db_xref="trGEN:NC006583_60" FT /translation="MEHTGNTELPENQCSRSIGSSWRTHTSISNPMAFTKCCC FT MTVLLDFHTSITDCTVQPSEKLLTSSSVTVIDFFHLLLILSRQYAVPYRNVHI FT CS" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '+' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..47 FT /number=1 FT /note="FIRST EXON; p-value: 0.437." FT exon 48..79 FT /number=2 FT /note="INTERNAL EXON; p-value: 0.461." FT exon 80..154 FT /number=3 FT /note="INTERNAL EXON; p-value: 0.897." FT exon 155..285 FT /number=4 FT /note="LAST EXON; p-value: 0.467." FT CONTIG join(NC_006583:4223664...4223710, 4223776...4223807, FT 4225846...4225920, 4230291...4230421) XX SQ Sequence 285 BP; 68 A; 88 C; 54 G; 75 T; other; atggagcaca cgggcaatac cgaactccct gagaaccagt gttccagaag catcggcagc 60 agctggcgca cgcatacttc aatttccaac ccaatggcct tcaccaagtg ctgctgcatg 120 actgtgctgt tggattttca tacctccatc acagattgca ctgtgcagcc cagtgagaag 180 cttctcacat cttcatctgt cacagtgatt gacttcttcc acctcctttt gatcctttct 240 agacaatatg cagttccata ccgcaacgtc cacatctgct cctga 285 // ID NC006583_61; SV 1; special; RNA; MAM; 714 BP. XX AC NC006583_61; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_61; NC006583_61. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..714 FT /organism="Canis familiaris" FT CDS 1..714 FT /protein_id="NC006583_61" FT /db_xref="trGEN:NC006583_61" FT /translation="MHMSVPEQSDTGPEVGLVASLPKKETGKDGLTQTLELDR FT SINDNTYYSTCKNMKVVLTEMPQRVNEEMLHPQVVRPSSPNYTSCTGFPAQEM FT QPLRKTVWRFLKQLKIDLPYDPAIALLGIYPKETDAVKRRDTCTPMFIAAMAT FT IAKLWKEPRCPTKDEWIKKMWFMYTMEYYSAIRNDKYPPFASTWMELEGIMLS FT EEGLTAVAGIPDQLQFTTVDPEPNPTSLTTTTPNISSLE" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '+' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..119 FT /number=1 FT /note="FIRST EXON; p-value: 0.809." FT exon 120..189 FT /number=2 FT /note="INTERNAL EXON; p-value: 0.038." FT exon 190..279 FT /number=3 FT /note="INTERNAL EXON; p-value: 0.090." FT exon 280..597 FT /number=4 FT /note="INTERNAL EXON; p-value: 0.038." FT exon 598..714 FT /number=5 FT /note="LAST EXON; p-value: 0.851." FT CONTIG join(NC_006583:4235769...4235887, 4248624...4248693, FT 4248968...4249057, 4251018...4251335, 4270701...4270817) XX SQ Sequence 714 BP; 217 A; 177 C; 175 G; 145 T; other; atgcatatgt ctgtgcccga gcagagtgac accggcccag aagtagggct agtggcaagc 60 ctcccgaaga aggagacagg caaggatggt ctgacccaga cactggagct ggacaggagt 120 ataaatgaca acacctatta cagtacctgc aaaaacatga aagtggtcct tacagaaatg 180 cctcagaggg taaatgagga gatgctgcat cctcaagtgg tcagaccttc aagcccaaac 240 tacaccagct gtaccggttt ccctgcacaa gagatgcagc cacttcggaa aactgtgtgg 300 aggttcctca aacagttaaa aatagacctg ccctacgacc cagcaattgc actgttgggg 360 atttacccca aagagacaga tgcagtgaaa cgccgggaca cctgcacccc tatgtttata 420 gcagcaatgg ccacgatagc caaactgtgg aaggagcctc ggtgtccaac gaaagatgaa 480 tggataaaga agatgtggtt tatgtataca atggaatatt actcagctat tagaaatgac 540 aaatacccac catttgcttc aacgtggatg gaactggagg gtattatgct gagtgaagag 600 ggtctcactg ctgttgctgg cattccagat cagctgcagt ttacaacagt ggaccccgag 660 cctaacccca cttccctcac caccaccacc cccaatataa gcagcttgga gtga 714 // ID NC006583_62; SV 1; special; RNA; MAM; 363 BP. XX AC NC006583_62; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_62; NC006583_62. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..363 FT /organism="Canis familiaris" FT CDS 1..363 FT /protein_id="NC006583_62" FT /db_xref="trGEN:NC006583_62" FT /translation="MDSQGFVLAVTIMREAIDEFRRFQRDKEVNSQLYSKLTC FT LDPEVLWGEGQRSLQTLLKFVPKGGGENHGELGGQLFTGPVIYTDKGRGSPVR FT NFTASTRAVSLSMAHSSGVSDVSFTVLG" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '-' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..12 FT /number=1 FT /note="FIRST EXON; p-value: 0.135." FT exon 13..114 FT /number=2 FT /note="INTERNAL EXON; p-value: 0.261." FT exon 115..297 FT /number=3 FT /note="INTERNAL EXON; p-value: 0.577." FT exon 298..363 FT /number=4 FT /note="LAST EXON; p-value: 0.007." FT CONTIG join(NC_006583:4333462...4333451, 4329322...4329221, FT 4295371...4295189, 4274364...4274299) XX SQ Sequence 363 BP; 85 A; 77 C; 106 G; 95 T; other; atggacagcc agggatttgt tttggctgtc actatcatga gggaagcaat tgatgaattt 60 cggcgttttc agcgagacaa ggaagtgaat tcacagctat acagcaaact tacatgcctt 120 gacccagagg ttctctgggg ggagggccag agatctttgc agaccttgct gaagttcgtg 180 cctaagggtg gtggtgaaaa ccatggagag cttggtggcc agctgttcac agggcctgtg 240 atatacaccg acaaaggacg tggaagcccg gtgagaaatt ttactgccag taccagggct 300 gtctccttgt ccatggccca cagctctggt gtctcagatg tttctttcac ggttttaggt 360 tag 363 // ID NC006583_63; SV 1; special; RNA; MAM; 2529 BP. XX AC NC006583_63; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_63; NC006583_63. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..2529 FT /organism="Canis familiaris" FT CDS 1..2529 FT /protein_id="NC006583_63" FT /db_xref="trGEN:NC006583_63" FT /translation="MATIAKLWKEPRCPTKDEWIKKMWFMYTMEYYSAIRNDK FT YPPFASTWMELEGIMLSEATLGRTPSSRGDKQQNSLKKKKKEEEEEEEEEEEE FT GGGGGGGRRGRRRRRKKEEEEEEEEEEEGRRRRKEEEEAEEEEEEKKNKVSTD FT RRRQYFPFITFSSNYRLQNAVVVFLGEKDVGRMGRTPKAWPEASAVTETVGER FT ILHAALLERPGGEGVAPLCPRTAVVGVHCAGAADIVIPSAQPHPTADTVTARC FT ADPVYEDLERVGYCSTGRIMEPDSNSNTLLDGEAPAASLFVRGFNGIQAARVV FT FGLMSATVSFQWSKCIRAERKPPTKVHKSAEPGPLLFPHLLLQASFPAGLAVF FT RLQDLLRPLPNTIAFLTVPMVMTTSTQPNSWRLLKATSSHSVSTSMRQAAHQL FT CYRTQIARRELMHARKWPSNAITYVWDSKDQQLKITSISSNKDPVMGISSGKS FT DQTEILHQSPPGLAVCPLPVSPRVWKARGLRGVFHTFSCRNSDGTWQRIPSCS FT LGLASPTATQSQRRAACKHVSRWMGWLQYRPPQGGSLWHKCPCCFRVMKPAAP FT HGLHKLAGCLLTAAPLTLVSGGALALGKALMSVRTVMLSSSKPILVWRMSIPW FT FREYFCISNTSFSSTCFISRYVQCRARPRKGELGVQISPAARGSRGVVTDMQG FT PCCLGLSPPNVYVRVSVFSVSEELCVDPCVPCAQQQASRKLFLIENANILQMK FT LNTVDKPADSPARRTGSRPASLRGTVPEAASTSAPVISKRTQEFNTKDGNPRP FT TGRPHAGHGATSCTLNMESHACDGLLRGAHLEGHWAPRPLRMLPSDEARRLGL FT WHACKRTK" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '+' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..171 FT /number=1 FT /note="FIRST EXON; p-value: 0.140." FT exon 172..194 FT /number=2 FT /note="INTERNAL EXON; p-value: 0.158." FT exon 195..416 FT /number=3 FT /note="INTERNAL EXON; p-value: 0.022." FT exon 417..529 FT /number=4 FT /note="INTERNAL EXON; p-value: 0.018." FT exon 530..688 FT /number=5 FT /note="INTERNAL EXON; p-value: 0.029." FT exon 689..749 FT /number=6 FT /note="INTERNAL EXON; p-value: 0.145." FT exon 750..879 FT /number=7 FT /note="INTERNAL EXON; p-value: 0.212." FT exon 880..1005 FT /number=8 FT /note="INTERNAL EXON; p-value: 0.851." FT exon 1006..1128 FT /number=9 FT /note="INTERNAL EXON; p-value: 0.058." FT exon 1129..1256 FT /number=10 FT /note="INTERNAL EXON; p-value: 0.016." FT exon 1257..1308 FT /number=11 FT /note="INTERNAL EXON; p-value: 0.022." FT exon 1309..1552 FT /number=12 FT /note="INTERNAL EXON; p-value: 0.068." FT exon 1553..1647 FT /number=13 FT /note="INTERNAL EXON; p-value: 0.035." FT exon 1648..1866 FT /number=14 FT /note="INTERNAL EXON; p-value: 0.043." FT exon 1867..2045 FT /number=15 FT /note="INTERNAL EXON; p-value: 0.152." FT exon 2046..2166 FT /number=16 FT /note="INTERNAL EXON; p-value: 0.540." FT exon 2167..2425 FT /number=17 FT /note="INTERNAL EXON; p-value: 0.375." FT exon 2426..2529 FT /number=18 FT /note="LAST EXON; p-value: 0.203." FT CONTIG join(NC_006583:4352272...4352442, 4363777...4363799, FT 4366496...4366717, 4377056...4377168, 4378611...4378769, FT 4380308...4380368, 4387862...4387991, 4388441...4388566, FT 4390164...4390286, 4391669...4391796, 4398822...4398873, FT 4400657...4400900, 4402529...4402623, 4402968...4403186, FT 4408644...4408822, 4415581...4415701, 4416293...4416551, FT 4418550...4418653) XX SQ Sequence 2529 BP; 614 A; 651 C; 742 G; 522 T; other; atggccacga tagccaagct gtggaaggag cctcggtgtc caacgaaaga tgaatggata 60 aagaagatgt ggtttatgta tacaatggaa tattactcag ccattagaaa tgacaaatac 120 ccaccatttg cttcaacgtg gatggaactg gagggtatta tgctgagtga agccacgctg 180 ggccgtaccc ccagcagcag aggagataaa cagcagaata gtttaaaaaa gaagaagaag 240 gaggaggagg aggaggagga ggaggaggag gaggaaggag gaggaggagg aggagggagg 300 agggggagga ggaggaggag gaagaaggag gaggaggagg aggaggagga ggaggaagaa 360 ggaagaagaa gaagaaagga ggaggaggag gcggaggagg aggaggagga gaaaaagaat 420 aaagtttcga ctgatcgtag aagacagtat ttccctttta taactttctc tagtaactac 480 cgtctacaaa atgcagtcgt cgtcttcttg ggcgagaaag acgttggacg catgggtagg 540 accccaaaag cctggcctga agcctcagct gtgacggaaa cggtgggtga gcgcatcctg 600 cacgccgcgc tcttagagcg accaggtgga gaaggggtgg ccccgctgtg tccccgcact 660 gctgtggtcg gggtccactg cgcgggcgct gctgacattg ttataccaag tgctcaaccg 720 caccccacag cggacacggt taccgccagg tgtgcagacc ctgtctatga ggacctagaa 780 cgtgtcgggt actgctcaac ggggagaatc atggagcctg acagcaattc caacacgctc 840 ctggacggcg aggcacctgc agcatcactg tttgtgaggg gctttaatgg catccaggct 900 gccagggtag tatttggtct aatgtccgca accgtttctt tccagtggag caagtgtatc 960 cgggcagaaa ggaaacctcc tactaaggtg cacaagagtg cagagccagg ccccttgctg 1020 ttccctcacc tgttgcttca agcttccttt ccagcaggcc tggctgtctt caggctccag 1080 gatcttctcc gacctcttcc aaataccatc gccttcctga cagtcccaat ggtgatgaca 1140 acttccactc agcccaacag ctggcgcctc ttaaaggcca cctccagtca ctccgttagc 1200 accagcatgc gtcaggccgc acatcagctg tgttacagga cacagattgc aagacgggag 1260 ctcatgcatg cacggaaatg gccatccaat gccatcacgt atgtttggga ttctaaggac 1320 cagcagctga agatcacatc catttcctcc aataaagatc cagtgatggg gatcagctca 1380 ggaaagtcag accagactga gattctgcac cagagtcccc ctggccttgc tgtttgtccg 1440 ttgcccgtca gtcctcgcgt gtggaaagct cgtggactca gaggcgtatt tcataccttt 1500 tcatgtagga actctgatgg cacctggcaa aggatcccca gctgcagcct gggtctggcc 1560 tctcccaccg ccacccagag ccagcgccgg gcagcttgca agcacgtgag caggtggatg 1620 ggctggttac agtaccggcc accacagggt ggctccctat ggcacaagtg cccctgctgt 1680 ttccgggtca tgaagcctgc agcccctcat ggtttgcata aacttgccgg atgcctcctt 1740 actgctgcac ctcttactct ggtttctggt ggagcccttg ctctggggaa ggcgctaatg 1800 tcagtgagaa ccgtgatgct gagctcttca aaacctattt tggtttggcg catgtctata 1860 ccttggtttc gagaatattt ctgtatatcc aacaccagtt tcagttcaac atgtttcatt 1920 agtcgctatg tccagtgtcg ggctcggccc aggaagggag agctgggagt gcagattagt 1980 cctgcagccc gtggctcccg tggggttgtc accgacatgc agggcccgtg ttgcttgggc 2040 ctcagtcctc cgaatgtgta tgtacgtgtg tctgtattca gtgtgagcga ggagctgtgc 2100 gtggacccgt gtgtgccatg tgcacagcag caggcatctc gaaaactctt cctgatagaa 2160 aatgcgaata ttctacagat gaagcttaac acagtggaca aaccagctga cagccccgct 2220 cgcagaaccg gttcacggcc tgcttctctt cggggcacgg tgccagaggc cgcttctact 2280 tcagcaccag tgatcagcaa acgaacccag gagtttaaca caaaagatgg aaacccaagg 2340 cccacaggcc ggccacatgc tggacatgga gccaccagct gcacgctgaa catggagtcc 2400 cacgcatgtg acggattgct ccgtggcgca caccttgaag gccactgggc gccgcggcct 2460 ctcagaatgc tgccgtcgga cgaagctcgc cgtcttgggc tctggcacgc ttgcaaacgc 2520 acaaaatga 2529 // ID NC006583_64; SV 1; special; RNA; MAM; 4791 BP. XX AC NC006583_64; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_64; NC006583_64. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..4791 FT /organism="Canis familiaris" FT CDS 1..4791 FT /protein_id="NC006583_64" FT /db_xref="trGEN:NC006583_64" FT /translation="MYLQRQLCNFPNSGRSCKFCKKLHSLQPPLRTPASPSRP FT PAPVSLRPFPRSPPKPRSPEARLQAANFPVPSASVPRPRASPNARRVRESSQG FT TPAGVRLTLQSLPPLPPCPPASLRGRKAAASGAASSPAEVRGRRTSSARGTRT FT QLEVKAGSHLVSAKETGSRGGGGSSRRGALPEGLVYREGRLPCELAQDSAPPA FT LCDFALHAVPGDGADDGDSGSEGRSGSEETNVCEKCCAEFFKWSDFLEHKKSC FT TKNPLVLIVNEDEPAPPSEEFPEPSPASSPSDQTESEVAEEPAPTESGEGSEV FT RAPEKEEEPMEAEPSGDKGFQNPGPSHTGKPPLPQIPEPAPVAAYGMPNTNVT FT LETLLSTKVAVAQFSQNARAAGSVGSGSGVTAVAIPMILEQLMALQQQQIHQL FT QLIEQIRSQVAMMNRQPLRPPLNPTAASGAPGAAVPTTSQLQGLATHSALQLS FT GGAPAAPAAPGPAAPPAAYEGAPLLAQPASGASAPHAPSGGPAVPAEVGGPAS FT SSAAPAAAAPALAATGSSGGSSQPQNASTPPALGPGPLLGSAPSLPNPLLPQT FT SASSVIFPNPLVSIAATANALDPLSALMKHRKGKPPNVSVFEPKANAEDPFFK FT HKCRFCAKVFGSDSALQIHLRSHTGERPFKCNVCGNRFSTKGNLKVHFQRHKE FT KYPHIQMNPYPVPEYLDNVPTCSGIPYGMSLPPEKPVTTWLDSKPVLPTVPTS FT VGLQLPPTIPGVGSYVDSPSLTPASRSPQRPSPTSSECTSLSPGLNSSESGVP FT GTAESPQPVLGGSSLTKTEPVSLPGANSRAGDIPPSGQVSSTVSTAAAALTDS FT SISTGLCSPVLPASSDQFKAKFPFGGLLDSMQTSETSKLQQLVENIDKKMTDP FT NQCVICHRVLSCQSALKMHYRTHTGERPFKCKICGRAFTTKGNLKTHFGVHRA FT KPPLRVQHSCPICQKKFTNAVVLQQHIRMHMGGQIPNTPLPEGFQDAMDAELP FT YDDKAAEALSGYDDDADENSMEDDAELQEPAGDPPKPLLAYSGSCPPSPPSVI FT SSIAALENQMKMMDSVMSCPQLTTLKSVENGSGESDHLSNDSSSAVGDLESRS FT AGSPALSESSSSMHALSPMNSNSESLPSKSPGLSNQEEPPETALKTERPDSPP FT PAPENGGALDLTAAPPGRPAIKEEAPFSLLFLSRERGKCPSTVCRVCGKPFAC FT RSALEIHHRSHTKERPFLCALCGRGCSTMGNLKQHLLTHTLSEPRSQSCDPDS FT ALGPSQSTPSLVASSTPTLIKMEVNGHSKALALGEGPPLPATVQVPPGPQAVM FT SPSLAPMLAPPPRRTPKQHNCQSCGKTFSSASALQIHERTHTGEKPFGCTICG FT RAFTTKGNLKGSHHLLGADHIGTAPGPAVPESGTVLNPVEHREPDKLGSETLA FT QDTNDADSVQRLGLHSASVHVAASRGWQAFGEKPTSVHMGTHMWNNAPARRGR FT RLSVENPMALLGGDALKFSEMFQKDLAARAMNVDPSFWNQYAAAITNGLAMKN FT NEISVIQNGGIPQLPVSLGGSAIPPLGSLAAGMDKARTGSSPPIVGLDKANSE FT TGASRPFTRFIEDNKEIGIN" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '-' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..274 FT /number=1 FT /note="FIRST EXON; p-value: 0.208." FT exon 275..404 FT /number=2 FT /note="INTERNAL EXON; p-value: 0.104." FT exon 405..515 FT /number=3 FT /note="INTERNAL EXON; p-value: 0.282." FT exon 516..616 FT /number=4 FT /note="INTERNAL EXON; p-value: 0.323." FT exon 617..4122 FT /number=5 FT /note="INTERNAL EXON; p-value: 0.792." FT exon 4123..4359 FT /number=6 FT /note="INTERNAL EXON; p-value: 0.749." FT exon 4360..4791 FT /number=7 FT /note="LAST EXON; p-value: 0.999." FT CONTIG join(NC_006583:4439204...4438931, 4432338...4432209, FT 4429763...4429653, 4429615...4429515, 4425375...4421870, FT 4421595...4421359, 4420699...4420268) XX SQ Sequence 4791 BP; 924 A; 1733 C; 1421 G; 713 T; other; atgtaccttc agcggcagct ctgcaacttc cccaactctg gccggtcctg caaattctgc 60 aagaaacttc attcgctaca gccgcccctc cgcacgcccg cgtccccttc ccgtccccct 120 gcccccgttt cccttcgccc cttcccccgc tcgcccccga agccccgaag ccccgaagcc 180 cggctgcagg ctgcaaactt tccggtgcca agcgcctcgg tgccgcggcc gagagcgtcc 240 cccaatgctc gccgcgttcg cgaaagttca cagggcaccc ccgctggggt caggctgacc 300 ctgcagtccc tgccccctct gcccccctgc ccccctgcct ccctgcgtgg ccggaaagcc 360 gctgccagcg gcgcagcatc aagcccggct gaggtccgag gaaggagaac cagttcagca 420 cgagggaccc gcacccagct tgaagtcaag gctggttcac atttggtatc agccaaggag 480 actggctccc ggggcggcgg cggctcctcc cgccggggag ctcttccaga ggggcttgtc 540 taccgggagg ggaggctccc ctgcgagctg gcccaggact cggcacctcc tgccttgtgt 600 gacttcgccc tgcacgccgt ccccggggac ggggccgacg atggggacag tgggagcgag 660 ggcaggagtg gaagtgaaga gacaaacgtg tgcgagaagt gctgtgccga gttcttcaag 720 tggtcagact tcctggagca caagaagagc tgcacgaaga acccgctggt gctgatagtg 780 aatgaagatg agccagcgcc gccgtccgag gagtttccag aaccttcccc ggccagctct 840 cccagcgacc agacagagag cgaggtggcc gaggaaccgg cccccacgga gagcggcgag 900 ggcagtgagg tgagggcccc agagaaggag gaggagccca tggaagccga gccctctgga 960 gacaaaggct tccagaaccc aggcccctcg cacacaggga agccgcctct acctcagatc 1020 cctgagccag ccccagtggc cgcctacggc atgccaaaca ccaacgtgac gctggagacc 1080 ctcctgagca ccaaggtggc ggtggcccag ttctcccaga acgccagggc cgcaggcagc 1140 gtgggctctg gcagcggggt gacagcggtc gccatcccca tgatcctgga gcagctgatg 1200 gcgctgcagc agcagcagat ccaccagctg cagctcatcg agcagatccg cagccaggtg 1260 gccatgatga accgccagcc cctgcggccg ccgctgaacc ccacggccgc ctccggggct 1320 cctggggccg ccgtgcccac caccagccag ctccaggggc tggccacgca ctcggccctg 1380 cagctctcgg gcggggcccc cgccgcgcct gcggcccccg gccccgccgc cccgcccgcc 1440 gcctacgagg gcgccccgct cctggcccag ccggcctccg gggccagcgc cccgcacgcg 1500 cccagcgggg ggcccgccgt ccctgctgag gtggggggcc ctgcgtcctc cagcgcggcc 1560 ccggccgctg ccgccccggc cctggcggcc accggctcgt ccgggggcag ctcccagccg 1620 cagaatgcct caacgccccc cgccctgggg ccggggcccc tcctcggctc ggcgcccagc 1680 ctgccaaacc cacttctacc tcagacctcc gccagcagcg tcatcttccc caacccgctg 1740 gtgagcatcg cggccaccgc caacgcgctt gaccccctgt cggccctcat gaagcaccga 1800 aagggcaagc ccccaaacgt gtcggtgttc gagcccaagg ccaacgccga ggacccgttc 1860 ttcaagcaca agtgcaggtt ctgtgccaag gtgttcggga gcgacagcgc cctgcagatc 1920 cacctgcgct cccacacggg tgagaggccc ttcaagtgca acgtttgcgg gaaccgcttc 1980 tccaccaagg gcaacctgaa ggtgcacttt cagaggcaca aggagaagta cccacacatc 2040 cagatgaacc cgtaccccgt cccagagtac ctggacaacg tgcccacctg ctccggaatc 2100 ccctacggga tgtcgctgcc tccagagaag ccggtgacca cctggctgga cagcaagccc 2160 gtgttgccca cagtgcccac atcggtgggg ctgcagctcc cgcccaccat ccctggcgtg 2220 ggcagctatg tggactcgcc cagcctcacc cctgccagcc gctccccaca gcggccctcg 2280 cccacgtcga gcgaatgcac ctctttgtcc cctggcctca acagctctga gtcgggcgtc 2340 cctgggactg ccgagtcccc gcagccagtg cttggtgggt cttctctgac caaaactgag 2400 cccgtgagcc tgcccggcgc caatagcagg gcaggggaca tccctcccag tgggcaggtc 2460 tccagcacgg tgtccacagc ggcggcggcc ctcacagaca gcagcatctc cacgggcctc 2520 tgcagcccgg tcctgccagc cagctcggac cagttcaagg cgaagtttcc cttcgggggg 2580 ctgctggact ccatgcagac atcagagacc tccaagctgc aacagctggt ggagaacatc 2640 gacaagaaga tgacggaccc caaccagtgc gtcatctgcc accgcgtgct gagctgtcag 2700 agcgccctga agatgcacta ccggacacac acgggggaga ggccgttcaa gtgcaagatc 2760 tgcgggcgtg ccttcaccac caagggcaac ctgaagacac acttcggggt gcaccgggcc 2820 aagccacccc tgcgcgtaca gcactcgtgc cccatctgcc agaagaagtt caccaacgcc 2880 gtggtgctgc agcagcatat ccgcatgcac atgggggggc agattcctaa cacgccactg 2940 ccagagggct tccaggacgc catggacgct gagctgcctt acgacgacaa ggcggcagag 3000 gccctcagcg gctacgatga tgacgcggac gagaactcca tggaggacga cgccgagcta 3060 caggagccgg ccggcgaccc gcccaagcca ctcctggcct actccggctc ctgcccgccc 3120 tcaccaccct ccgtcatctc cagcatcgcc gccctagaga accagatgaa gatgatggac 3180 tcggtcatga gctgcccaca gctcaccacc ctcaagtctg tggagaacgg gtccggcgag 3240 agcgaccacc tgagcaatga ctcgtcgtca gccgtgggtg atctggagag ccggagcgcg 3300 ggcagcccgg cgctgtcgga gtcctcgtcc tccatgcacg ccctgtcgcc catgaacagc 3360 aacagcgaga gcttgccctc caagtccccg ggcctcagca accaggagga gcccccggag 3420 acggccctaa agaccgagag gccggacagc cctccccccg cacccgaaaa cgggggtgcg 3480 ctggacctca cggcggcccc gcccggccgg ccagccatca aggaggaggc cccctttagc 3540 ctgctgttcc tgagcagaga acggggtaag tgtcccagca ctgtgtgtcg tgtctgtggc 3600 aagccttttg cttgcaggag cgcgttggag atccaccacc gcagccacac taaggagcgc 3660 ccgtttctct gtgcgctctg cgggcgcggg tgctccacta tgggtaattt aaaacagcac 3720 ttactgacgc acacgttgag cgagccgcgt tctcagtcct gtgaccccga ctctgcccta 3780 ggtcccagcc aaagcactcc tagcctggtt gccagctcca cgcccaccct gatcaaaatg 3840 gaagtgaatg ggcacagcaa ggccctcgcg ctgggcgagg gcccgccgct gccagccacg 3900 gtgcaggtgc ccccagggcc tcaggcggtg atgagcccca gcctcgcgcc catgctggcc 3960 cccccgccac gccggacacc caagcagcac aactgccagt catgtgggaa gaccttctcc 4020 tcggccagcg ccctccagat tcacgagcgt acacacaccg gggagaagcc cttcggctgc 4080 accatctgcg ggagggcatt caccacaaag ggcaacctca agggctcaca tcacctcctg 4140 ggggccgacc acataggcac tgctcctggg ccagcagtcc cggagtctgg cacagtcttg 4200 aatccggtgg aacaccgaga accagataaa ctgggctctg aaacacttgc acaagataca 4260 aatgatgcag attctgtgca gaggctgggg ctgcattctg cttctgtcca cgtggccgcc 4320 agcaggggct ggcaggcctt tggtgaaaag cccaccagcg tgcatatggg cacgcacatg 4380 tggaataatg cccccgcgcg gcgtggccgc cgcctgtccg tggaaaaccc catggctctg 4440 ctaggtggtg atgccctcaa gttctcagaa atgttccaga aggacctggc ggcgcgagcc 4500 atgaatgtag accccagctt ttggaaccag tatgctgcag ccatcacaaa tgggctggcc 4560 atgaagaata acgaaatctc cgtcatccag aacggcggca ttccccagct cccagtaagt 4620 ctcggcggaa gcgccatccc ccccttgggt tctctggccg ccggaatgga caaagcacgc 4680 actggcagta gtccacccat cgtgggtttg gacaaagcga actccgagac aggagccagc 4740 cggccgttca cacggtttat tgaagataac aaggagattg gcattaacta g 4791 // ID NC006583_65; SV 1; special; RNA; MAM; 1077 BP. XX AC NC006583_65; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_65; NC006583_65. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..1077 FT /organism="Canis familiaris" FT CDS 1..1077 FT /protein_id="NC006583_65" FT /db_xref="trGEN:NC006583_65" FT /translation="MSRALGRRPRRERGERGARRILHNLSTCVLKYDHILFIH FT QFRAEGFVVSSDPPTPYKELIGSPCYGKELETARDLEPGSSCKHGNGHPTPSR FT MFGCENFQGGSSTKWHFALQKVSEFHDVDQGYSRRRTVTSPQMQACSRALAQL FT DSRVVETCCCASQLDVIRFPVFASVGGGPGPPVPVRVRAAPESPPWEGHTMEE FT QTVLCYGTSSYLQQVLPKGPELEADVAEASQGLHEAGPVVQAHWQWAPGSGTS FT KGGCGSITRELPKWSFLLVGKQRDGTGTMPTGLFLESMSTDLGRPDSQAQRCF FT GVGNTRVTRPQTCRGSSKVTPVSVRDVIDLRPRTLYRQLAKPRWPGFPEGGKC FT F" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '+' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..60 FT /number=1 FT /note="FIRST EXON; p-value: 0.415." FT exon 61..232 FT /number=2 FT /note="INTERNAL EXON; p-value: 0.551." FT exon 233..363 FT /number=3 FT /note="INTERNAL EXON; p-value: 0.852." FT exon 364..451 FT /number=4 FT /note="INTERNAL EXON; p-value: 0.222." FT exon 452..619 FT /number=5 FT /note="INTERNAL EXON; p-value: 0.786." FT exon 620..811 FT /number=6 FT /note="INTERNAL EXON; p-value: 0.804." FT exon 812..938 FT /number=7 FT /note="INTERNAL EXON; p-value: 0.798." FT exon 939..1008 FT /number=8 FT /note="INTERNAL EXON; p-value: 0.382." FT exon 1009..1077 FT /number=9 FT /note="LAST EXON; p-value: 0.116." FT CONTIG join(NC_006583:4442477...4442536, 4446500...4446671, FT 4447287...4447417, 4447700...4447787, 4451499...4451666, FT 4454348...4454539, 4455189...4455315, 4457162...4457231, FT 4459902...4459970) XX SQ Sequence 1077 BP; 224 A; 301 C; 331 G; 221 T; other; atgtcccggg cgctcggccg gcggccccgg cgggagcgcg gggagcgggg cgcacgccgg 60 atactacata atttgtccac ctgtgtcctt aaatacgatc acatactatt tatccaccag 120 ttccgtgctg agggttttgt tgtatcctca gatcccccaa caccatacaa ggagcttatt 180 ggtagcccat gctatgggaa ggagctagag accgctagag atttggaacc tgggagctca 240 tgcaagcacg gaaatggcca tccaacgccg tcacgtatgt ttgggtgtga gaacttccag 300 ggaggcagta gcacaaagtg gcattttgct ctccagaaag tcagcgaatt ccacgatgta 360 gatcaaggat acagtcgtag gaggacggtc acctccccgc agatgcaggc ctgctcccga 420 gcactggctc agctggactc acgtgttgtt gaaacttgtt gctgtgcgtc gcagttagac 480 gtaattaggt ttccagtgtt tgcctccgtt ggaggcggcc ctggtccccc ggtgcctgtg 540 agggtgagag cagccccaga gtcaccacct tgggagggcc acacgatgga ggagcaaact 600 gtcctctgtt acgggacaag ttcatatctg cagcaggtgc tccccaaggg ccccgagctg 660 gaggctgatg tggccgaagc ctcccagggt ctccatgagg ctggccctgt tgtccaggcc 720 cattggcagt gggcaccagg cagcggtacc agcaaggggg gctgtggcag catcaccaga 780 gaactgccca agtggagctt tcttcttgtg gggaagcaaa gggatgggac aggaaccatg 840 cccacgggcc tgttcttgga atccatgtcc actgaccttg ggcggcctga cagccaagcc 900 cagcggtgct ttggcgttgg gaacacccgc gtaaccaggc cgcagacgtg ccgcggctcc 960 tccaaggtga ctcctgtgtc tgtgagggat gttattgacc tccggccgcg aactctgtac 1020 cgccagctcg caaagcccag atggccaggc ttcccagaag gtggaaaatg cttctag 1077 // ID NC006583_66; SV 1; special; RNA; MAM; 645 BP. XX AC NC006583_66; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_66; NC006583_66. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..645 FT /organism="Canis familiaris" FT CDS 1..645 FT /protein_id="NC006583_66" FT /db_xref="trGEN:NC006583_66" FT /translation="MESRAQGLGLAPSALSKPMLLVCTPATERTRCTWAVFPG FT SRASSPPAPALGHYLSSTWPAEHQQLLPDICRGRTRAYVLTPTSLRQDVPKSA FT TSSHIRSNEGGRKRVTGDRVTPVGDVVQAGSTQRSWRSRCEEGQATENTIEGW FT SPQTIHSEPEPQHSRSSCPSCFRENIMMHPKCLDEKLYMLQGVLILSFFTELR FT SPFTTSKYSERRCLRA" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '-' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..105 FT /number=1 FT /note="FIRST EXON; p-value: 0.922." FT exon 106..224 FT /number=2 FT /note="INTERNAL EXON; p-value: 0.612." FT exon 225..645 FT /number=3 FT /note="LAST EXON; p-value: 0.457." FT CONTIG join(NC_006583:4466233...4466129, 4464946...4464828, FT 4462153...4461733) XX SQ Sequence 645 BP; 152 A; 193 C; 169 G; 131 T; other; atggagagca gggcacaggg gctcgggctt gccccctcag ccctcagcaa gcctatgctc 60 cttgtctgca caccagccac ggagaggacg cgctgtacct gggcggtgtt tccaggcagt 120 cgagcctcaa gtcccccggc tccagccctg ggtcactatc tgagcagcac atggcctgca 180 gagcaccagc agctcctccc tgacatctgc cgagggcgga caagagccta tgtgctcaca 240 ccaacctccc tccggcagga cgtgcctaag tcagccacat cttcacatat tcggtctaat 300 gaaggtggca ggaaacgggt caccggtgac cgtgtgacac cagtaggaga cgtggttcag 360 gctggatcaa cgcagagatc atggcgctct aggtgtgagg agggacaagc cacggaaaac 420 accatcgagg gctggagccc ccagaccatc cactctgaac ctgaaccaca gcactccagg 480 tcatcttgcc cttcctgctt ccgggaaaat atcatgatgc atccaaaatg tctagatgag 540 aaattgtaca tgcttcaggg tgttctcatt ctctcatttt tcacagaatt aagatcaccg 600 tttacaacgt ctaaatattc tgaacgcagg tgtctgcggg cctga 645 // ID NC006583_67; SV 1; special; RNA; MAM; 1845 BP. XX AC NC006583_67; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_67; NC006583_67. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..1845 FT /organism="Canis familiaris" FT CDS 1..1845 FT /protein_id="NC006583_67" FT /db_xref="trGEN:NC006583_67" FT /translation="MWRSGEHKKQKYQLRSLAANSNSNPKQLVQPPASAQPDM FT RGSPEQHPWKVYLGPATAREGKQLAGLGVDLKSSSISDDTQGPYEWGLGEERA FT EAQLSGREQSSPEWAFIVWTQRAGGPPIAHERSHGFSLSSPSPGCVQSPPGQA FT PSGVLHPCQAPTLARAPDGGGMLQSHSKQSPRIFHIPADALGTQLSCLLLHRT FT IVFLRLRSLRAVLFPTSVPEPLLRLWNASALRAAAPEGLKFENQHMSLFVEIS FT KLISANTGCVCGVAAEGNLCGVHKPGQSQRGGCAGTVPATLWPQGFPAHLSTA FT RTPGSEKANISAADRGTITILSVSDSEQCHCLDGKPSASLGVSFNERKRTEDA FT WGPGPACEGWLAAGCRQVEDTCVVMDMKGDTGEETQTNQTGSKRLALSELTGA FT IMLPETQSLFTSSAPRSAALPLHDPEGRPCTSGRNAATGGEALEPEGRRDGAT FT AAARRPRQREQGLKHDTLAMICSHHREHPSICQEGSVHPTALPAVLEPTATHA FT PPSRGDLRAAGATKGPDVPYLYSMTQQTEVSPSCDDQTTGEPTHNEVTAPQEI FT NLQAEVVTVLLHSHYVQTWGEQTAFPLLLCCSLSVPSAALTPNFI" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '-' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..80 FT /number=1 FT /note="FIRST EXON; p-value: 0.161." FT exon 81..169 FT /number=2 FT /note="INTERNAL EXON; p-value: 0.207." FT exon 170..340 FT /number=3 FT /note="INTERNAL EXON; p-value: 0.340." FT exon 341..703 FT /number=4 FT /note="INTERNAL EXON; p-value: 0.525." FT exon 704..845 FT /number=5 FT /note="INTERNAL EXON; p-value: 0.602." FT exon 846..1081 FT /number=6 FT /note="INTERNAL EXON; p-value: 0.031." FT exon 1082..1152 FT /number=7 FT /note="INTERNAL EXON; p-value: 0.884." FT exon 1153..1242 FT /number=8 FT /note="INTERNAL EXON; p-value: 0.726." FT exon 1243..1468 FT /number=9 FT /note="INTERNAL EXON; p-value: 0.468." FT exon 1469..1610 FT /number=10 FT /note="INTERNAL EXON; p-value: 0.795." FT exon 1611..1701 FT /number=11 FT /note="INTERNAL EXON; p-value: 0.675." FT exon 1702..1776 FT /number=12 FT /note="INTERNAL EXON; p-value: 0.650." FT exon 1777..1845 FT /number=13 FT /note="LAST EXON; p-value: 0.863." FT CONTIG join(NC_006583:4487017...4486938, 4485173...4485085, FT 4483292...4483122, 4477978...4477616, 4477505...4477364, FT 4474102...4473867, 4471524...4471454, 4471389...4471300, FT 4470354...4470129, 4469394...4469253, 4468121...4468031, FT 4467052...4466978, 4466785...4466717) XX SQ Sequence 1845 BP; 400 A; 577 C; 537 G; 331 T; other; atgtggcgca gtggggagca caagaaacag aagtaccagc tgagatcttt agcagcaaat 60 tcaaactcaa acccgaagca actcgtccag ccgccagcct ctgctcagcc cgacatgcgg 120 gggagccccg agcagcaccc gtggaaggta tatctggggc ctgcgacagc acgggagggc 180 aagcagttgg caggacttgg cgtcgacctc aagagtagca gcatcagtga cgacacccaa 240 gggccatatg agtggggtct cggggaggag agggcagaag cccagctctc gggcagggaa 300 cagagctcgc ccgagtgggc attcatcgtc tggactcagc gggcaggagg accaccgatc 360 gcccatgaga ggtcccacgg tttctccttg tcttcccctt cccccggctg cgtgcagtct 420 ccaccgggtc aggcaccctc aggcgtcctg cacccctgcc aggcacccac gctggcacgt 480 gcccctgatg gaggtggcat gctccaaagt cattccaagc agagcccccg cattttccac 540 attcctgcag atgctctagg cacacaactg agctgcctcc tcctccatcg caccattgtc 600 ttccttcgcc tgaggtcact gcgggctgtg ctcttcccca catccgtgcc agagcccctg 660 ctgcgcctct ggaacgcgtc tgcgcttcgg gcagcagctc cagaaggtct caagttcgaa 720 aatcagcaca tgtccttgtt cgtggaaatt tctaaactaa tatctgcaaa cacgggttgt 780 gtctgtggag tcgctgcaga aggcaacttg tgtggggtgc acaagcccgg gcaaagccag 840 cgcgggggat gtgctgggac agtgcctgcg accctttggc cacaagggtt cccagctcac 900 ctgtcaactg cgaggacacc tgggagtgaa aaagcaaaca tctcagccgc cgatagaggc 960 accattacaa tattgtcagt gtcggactct gagcagtgcc actgtctaga tggcaaacct 1020 tctgcaagtc tgggggtttc cttcaatgaa aggaagagga cggaggatgc ctgggggccc 1080 ggtcctgcgt gcgaggggtg gctggcagct ggctgccggc aggtggagga cacatgcgtg 1140 gtcatggaca tgaaagggga cacaggggag gagacccaga ccaaccaaac tgggtctaag 1200 cggctggctc tgtcagaact gaccggggcc atcatgctcc cggagacaca gtccctgttc 1260 acatcctctg ctcccaggag cgcagccctg ccactccacg acccagaagg ccggccctgc 1320 acttctggta ggaacgcagc cactggcggt gaagccctgg agcccgaggg acggcgggat 1380 ggagcaacgg ccgcagcacg cagaccccgg cagagggaac aaggcctcaa acacgacacc 1440 cttgccatga tttgttcaca tcacagagag catccgtcca tctgtcagga agggtccgtg 1500 catcccacgg cacttccagc ggtcctggaa cccacagcca cacatgcacc tccttctcga 1560 ggggacctgc gtgctgcggg ggcaaccaag ggccctgatg tgccctatct ttactccatg 1620 acccagcaga ctgaagtgtc tccctcctgt gacgaccaaa ccacagggga acccactcac 1680 aacgaggtca cggctcctca ggaaataaat ctccaggcag aagtggtgac tgtcctgctg 1740 catagtcact atgtgcagac ctggggcgag cagactgcct tcccgctgct gctgtgctgc 1800 agcctgtctg tcccctcagc agccttgacg cccaacttca tctga 1845 // ID NC006583_68; SV 1; special; RNA; MAM; 1701 BP. XX AC NC006583_68; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_68; NC006583_68. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..1701 FT /organism="Canis familiaris" FT CDS 1..1701 FT /protein_id="NC006583_68" FT /db_xref="trGEN:NC006583_68" FT /translation="MGTSQSSSPSPPLEAAQASPRVFRPQKLFWLRLPEPSSE FT PDPQAQEEPGSSSGPAGGQQDTAQHAPQCLALREKAFSNQIPLAVSSLPSAEL FT RTVLVLQRNPEELDYMQTKKRSPDRTVKVENRLIPLLSHINTSKIRSRISISK FT NVAKASEKIQALSWEQSMNLRSWALPYLVRLPQPKASTVHVETPKSYSLAVFK FT YTAGIINYGHSRIQSSHNRWSTSPHNPSPSPVATPLSAAGSQTFSILIPCVRE FT RRRHVLSAPADFTWPVRKSPDGHSQTAKVSLVEEQMKNWGGKVEAVLWRPVCM FT KAFSGCGQLPIVASCERSVESGGKDFWKFQKVHLKASLWNRAATGKLLRPATA FT HHVSPASSPQKGYTEDVGSPDLQESLHSFTSVSGRCFSGLAGRPPPQDKPRDA FT KRRFSRLCAHWDAMSMVTHPLDPPWNLQAPHALSSGLAAHSGVDSGDRKIQGN FT VCFQQHHQLPWSDSRAGGHDPQRGGPSSSGRAPGQVHFLMARCSLTDFRTRKH FT FSDPLTMTSVSQSGSSTNGVLYPEDEETVTGSALGRRTLESANDVKQNSE" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '-' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..163 FT /number=1 FT /note="FIRST EXON; p-value: 0.974." FT exon 164..297 FT /number=2 FT /note="INTERNAL EXON; p-value: 0.826." FT exon 298..371 FT /number=3 FT /note="INTERNAL EXON; p-value: 0.546." FT exon 372..556 FT /number=4 FT /note="INTERNAL EXON; p-value: 0.423." FT exon 557..874 FT /number=5 FT /note="INTERNAL EXON; p-value: 0.970." FT exon 875..1323 FT /number=6 FT /note="INTERNAL EXON; p-value: 0.654." FT exon 1324..1433 FT /number=7 FT /note="INTERNAL EXON; p-value: 0.942." FT exon 1434..1701 FT /number=8 FT /note="LAST EXON; p-value: 0.676." FT CONTIG join(NC_006583:4505971...4505809, 4504459...4504326, FT 4498424...4498351, 4496861...4496677, 4496573...4496256, FT 4494137...4493689, 4493226...4493117, 4489143...4488876) XX SQ Sequence 1701 BP; 410 A; 515 C; 442 G; 334 T; other; atgggcacca gccagtcaag cagcccctcc ccacccctgg aagctgcgca ggcatctcca 60 cgggtctttc ggccacagaa gctcttctgg cttcgtcttc ccgagccgtc ttcagagcca 120 gatccccaag cacaagagga acccggcagc tcctctgggc cagcgggtgg gcaacaggac 180 acagcacagc acgcccccca gtgcctggcg cttagagaaa aggccttttc taaccaaatc 240 cctttagcag tttccagctt accctctgcc gagctccgga ctgtgttagt attacagagg 300 aatcctgaag aattggacta catgcaaacc aagaaacgtt caccagatag aaccgtcaag 360 gttgagaaca gacttattcc attactgagc catattaaca catctaagat cagaagtcgc 420 ataagcatct ccaaaaatgt tgcaaaggca tctgagaaaa ttcaagcgtt gtcatgggaa 480 cagtccatga acctgcgcag ctgggcgctt ccatacctgg tgcgtctacc ccagcccaag 540 gccagcaccg tccatgtgga aacacctaag agctactcct tagcggtttt caagtataca 600 gcaggaatca tcaactacgg tcactctaga attcaatcat ctcacaacag gtggtcgacc 660 agccctcaca accccagccc cagccctgtg gccacccctc tctctgccgc tggaagtcag 720 acattttcga ttctgattcc gtgtgtgagg gagcgcaggc ggcacgtcct ctccgcgccc 780 gctgacttca cttggcctgt gcgaaagagc cccgatggcc acagccaaac agccaaagtg 840 tcattggtgg aggagcagat gaagaactgg ggaggaaaag tggaggccgt cctctggcgc 900 cccgtgtgca tgaaggcttt cagcggctgt gggcagcttc ccatcgtagc cagctgtgaa 960 cgttctgtag aatcaggcgg taaagacttc tggaagttcc agaaagtgca tctcaaagcg 1020 tctctgtgga accgcgctgc cacgggcaag ctactcaggc ctgccactgc ccaccatgtc 1080 tccccggcct ccagcccaca gaaaggatac actgaggacg tgggttcacc agacttgcag 1140 gaaagtctgc acagtttcac ctcagtttct ggaagatgtt tttctggcct cgctgggcgg 1200 cctccacccc aagacaagcc cagagacgcc aagcggaggt tctccaggct gtgtgcccac 1260 tgggatgcaa tgtccatggt cacacaccct ctggaccctc catggaacct gcaggcccca 1320 catgctttga gcagcgggct ggctgcacat agtggagttg attctgggga caggaaaatc 1380 caggggaacg tctgcttcca gcagcatcat cagctcccgt ggtctgacag tcgtgctggt 1440 ggccatgacc cacaaagggg aggtccctct tccagtggca gagcacctgg ccaggtgcac 1500 ttcctcatgg cccgctgctc actaactgac ttcaggactc ggaaacattt ctcagaccca 1560 ctcaccatga catcagtaag ccagtcaggg agcagcacca atggagtgct gtatcctgag 1620 gatgaagaga cagtcacagg ctctgccctc gggaggcgga cgctggagtc ggccaatgac 1680 gtcaaacaga acagcgagta g 1701 // ID NC006583_69; SV 1; special; RNA; MAM; 381 BP. XX AC NC006583_69; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_69; NC006583_69. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..381 FT /organism="Canis familiaris" FT CDS 1..381 FT /protein_id="NC006583_69" FT /db_xref="trGEN:NC006583_69" FT /translation="MTWAQAVRLEGFIRAGLTPRSLLCLLDVHVDDTDDRADT FT QTHGRTDTYVHTGDQLLFELEVVFEFTLVGSGFTKGRLFGKNVSGINTCTCFQ FT EWGPLDLDPITPPLPSFRGPTGALQVSLLVVEEG" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '+' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..161 FT /number=1 FT /note="FIRST EXON; p-value: 0.157." FT exon 162..275 FT /number=2 FT /note="INTERNAL EXON; p-value: 0.151." FT exon 276..381 FT /number=3 FT /note="LAST EXON; p-value: 0.059." FT CONTIG join(NC_006583:4512888...4513048, 4513653...4513766, FT 4514785...4514890) XX SQ Sequence 381 BP; 88 A; 94 C; 107 G; 92 T; other; atgacctggg cccaggctgt tcggctggaa ggattcatca gagcgggttt gacccctcgg 60 agcctcctct gcctgctgga tgtgcatgtg gacgacacag atgatcgtgc agacacacag 120 acgcatggac gtacagacac atatgtacac acaggagatc agctcctttt tgaactagaa 180 gtggtgtttg aatttacatt agtgggttca ggattcacca agggcagatt atttggtaaa 240 aatgtttctg gaataaatac atgcacctgc ttccaggagt ggggacctct ggatcttgac 300 ccaatcaccc cacccttgcc ctccttcagg ggccccactg gggcgctgca ggtctcgctg 360 ctggtggtag aggagggtta a 381 // ID NC006583_70; SV 1; special; RNA; MAM; 717 BP. XX AC NC006583_70; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_70; NC006583_70. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..717 FT /organism="Canis familiaris" FT CDS 1..717 FT /protein_id="NC006583_70" FT /db_xref="trGEN:NC006583_70" FT /translation="MGPQLYGQLIFDKAGKTIHWKRDSLFNKWCWENWTAMCR FT RMKLDHSLTPDTKINSKWMKDLNVRQESIKILEENTGSTLFELGHSNFLQDTS FT TKGRETKVKMNYWDFLKIKSFCTAKETINKTKRQPTEWEKIFANDLSDKGLVS FT KIYKELIKLNSKETNNPIMKWAKDMNRNFTKEDIDMANKHMRTCSASLAIREI FT QIKTTMRSHLIPGSSRKFPPPEGLSDAERFGGTNLLHQSE" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '+' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..630 FT /number=1 FT /note="FIRST EXON; p-value: 0.386." FT exon 631..717 FT /number=2 FT /note="LAST EXON; p-value: 0.336." FT CONTIG join(NC_006583:4519199...4519828, FT 4520347...4520433) XX SQ Sequence 717 BP; 282 A; 159 C; 141 G; 135 T; other; atgggccctc aactctatgg tcaactaatc ttcgacaaag caggaaagac tatccactgg 60 aaaagggaca gtctcttcaa taaatggtgc tgggaaaatt ggacagccat gtgcagaaga 120 atgaaactag accattctct tacaccagac acaaagataa actcaaaatg gatgaaagat 180 ctaaatgtga gacaagaatc catcaaaatc ctagaggaga acacaggcag cacccttttt 240 gaactcggcc acagcaactt cttgcaagat acatccacga agggaaggga aacaaaagta 300 aaaatgaact attgggactt cctcaagata aaaagcttct gcacagcaaa ggaaacaatc 360 aacaaaacta aaagacaacc tacagaatgg gagaagatat ttgcaaatga cctatcagat 420 aaagggctag tttccaagat ctataaagaa cttattaaac tcaacagcaa agaaacaaac 480 aatccaatca tgaaatgggc caaagacatg aacaggaatt tcaccaaaga agacatagac 540 atggccaaca agcacatgag aacatgctcc gcatcactgg ccatcaggga aatacaaatc 600 aaaaccacaa tgagatccca cctcatacca ggttcttcaa ggaagttccc cccgccggag 660 gggctgtcag atgctgaacg ttttggtggc actaatctgc tacaccagag tgaatag 717 // ID NC006583_71; SV 1; special; RNA; MAM; 5307 BP. XX AC NC006583_71; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_71; NC006583_71. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..5307 FT /organism="Canis familiaris" FT CDS 1..5307 FT /protein_id="NC006583_71" FT /db_xref="trGEN:NC006583_71" FT /translation="MAQDAAAFSRGGASAPGAVLRPRPHVNNPQTERFQLFLP FT KSLRPHARRNRWACSQGPGPGPGPGPTAREAPALQRGARARAAGGLRALGDTW FT DALIRLYDPAHPAAYQTTVMSMVIPVHKGSLFSTSLPTPVISSLFYTSHSDRQ FT SKYPRKSTPRRNKLDHYAIIKFPLTTESAMKKTEDNNTLVLTVDVKANKHQIK FT QAVKKLYDIDVAKVNTLIRPDGEKKATIITWYQPSVIIWYLSVTIRYSPSSPV FT KWDDSIIKQEYNSSGVQFYFENTGLLQRLEISTNALTDSPGGQECGRLSLTVD FT SSIFTTPPRNKPSREESPQPHGALTWGSSNRTALREDSPPDTCSASCLMPFPL FT PAQLTWSPEKGPVGTAKYQPGQTICGLTAFTVLEASRKGKQECVLANLGSVGG FT SGLLEVLPLSRDKNSVGLKQMIEKHKNQDTPQDKVVTVNTSPGSLEGGCTNAP FT LPRRPFVGARSSRWPGCWPRSVQVWPAQGTTALRGRLQLRLRVQAPPDPDGPY FT PLSASQHTKAISTPRFGQRKQGGVQRDASRAVPKYARRELGTGSRGWHQKPDV FT LRGRDSADGVAGGFQASLEAKDNSSPGKSGTSQPPSGNREDSDGSFKTQIIWS FT VTFSIQSLSVTREAYLHCGLCTDGPPDPPGPCDWTKTTLQPANVRIFLESVPQ FT DCGQRGALGPMNRPKYPEDKDLRLQPAAAGMWPAMTCCMLTGCFRGLMDKDIL FT TAFPRTCHISPMCPSQAQPMRQLMAQWAAGRRSRRTAWGQLRRCMGCAGRAEL FT YNVPPSEQKIPDLVCSPPLMAAPGQRNTNPSRAAAALETHLQDVASCDLHVGH FT ARGTLRTHEGSGPGPQRRRHTQVLILWSPPKVAMKGPHYATFAMTLQWLLSAL FT PGTLPVLRWDEVCTVQPFHVPEPLLLINPTFPSRCPGNNDSTALTWYSGQKHV FT TSVEPGGNVTQTQTEAQNPTNRLSLVPPPNTAGRPASGWQSDTPESPRTHPSS FT GPSTREARAPYDGGSKAQALQVVLLNVARAPGWWAPISNAVHSSHWGTSDGDA FT GGHGEQVQVWSPTPFRITGADFVCWNNLMHTQTWLPSSPSDCALDAKAGVVSV FT SRTCSVCGVSESPDVGKPQKSVQGCPSPQETHGDQGHADGDFLSHPQNFPTLE FT HGHEEMVIMEGQTPPNGSSGDCHATERLQEPGGVLQVEDEQVINTGEQGLLSS FT FILCFKAESPDTCWALSKWLQEAPGPRRTSHHLLPGGIGRDAQQARRSSRPPP FT RPLTRVLIGGKRELFNLLQMFALSKDTSKRALGFTLVQQTLQTTAVMDGASPQ FT EPQQRPYSPFREAGPLTGLQLTGGPAGMAREFEMSGVFTDVLSAVGRCADTQV FT GAPRAEEALGLFRMLDTVARIPDVHHFDLKHSSVSSSAASMPGPRLPGSGGFK FT PQLQDPCGSHWPVPANQCQGLRCLRGHTGFQTALENDGRRVLARPLYKNTSST FT LPPTKEASAQSPGSETWHSYQGLDLGNQVKQRQEKANHSLNPPTQCAEGPGDR FT HRPPHKASKHRRVPTGAAGVGARPCRRDQCLIHTGHQDPSLALSTETSVVAFY FT PFVSSNSREFKVHFFKTTTVHILTGGEIFDVDITVPRDKGRCCGGQALWYYHN FT NFTDEGRGTPKREGVPKVTQQADEEEPVVGRLPGWEPCAHSSSCFSATASGRA FT VGALRADPTPNIPGGVAPLAPLQALLPSHEPMAPKQLTLCHSASHQLVGVTHV FT PTPPRDACMSCSGGCLCVGFPMANPESLYDGFS" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '-' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..267 FT /number=1 FT /note="FIRST EXON; p-value: 0.695." FT exon 268..352 FT /number=2 FT /note="INTERNAL EXON; p-value: 0.873." FT exon 353..431 FT /number=3 FT /note="INTERNAL EXON; p-value: 0.232." FT exon 432..671 FT /number=4 FT /note="INTERNAL EXON; p-value: 0.088." FT exon 672..751 FT /number=5 FT /note="INTERNAL EXON; p-value: 0.717." FT exon 752..874 FT /number=6 FT /note="INTERNAL EXON; p-value: 0.636." FT exon 875..1009 FT /number=7 FT /note="INTERNAL EXON; p-value: 0.712." FT exon 1010..1068 FT /number=8 FT /note="INTERNAL EXON; p-value: 0.180." FT exon 1069..1684 FT /number=9 FT /note="INTERNAL EXON; p-value: 0.332." FT exon 1685..1786 FT /number=10 FT /note="INTERNAL EXON; p-value: 0.844." FT exon 1787..1884 FT /number=11 FT /note="INTERNAL EXON; p-value: 0.805." FT exon 1885..2037 FT /number=12 FT /note="INTERNAL EXON; p-value: 0.448." FT exon 2038..2166 FT /number=13 FT /note="INTERNAL EXON; p-value: 0.508." FT exon 2167..2275 FT /number=14 FT /note="INTERNAL EXON; p-value: 0.388." FT exon 2276..2438 FT /number=15 FT /note="INTERNAL EXON; p-value: 0.753." FT exon 2439..2609 FT /number=16 FT /note="INTERNAL EXON; p-value: 0.780." FT exon 2610..2761 FT /number=17 FT /note="INTERNAL EXON; p-value: 0.543." FT exon 2762..2882 FT /number=18 FT /note="INTERNAL EXON; p-value: 0.230." FT exon 2883..3028 FT /number=19 FT /note="INTERNAL EXON; p-value: 0.124." FT exon 3029..3193 FT /number=20 FT /note="INTERNAL EXON; p-value: 0.223." FT exon 3194..3337 FT /number=21 FT /note="INTERNAL EXON; p-value: 0.588." FT exon 3338..3418 FT /number=22 FT /note="INTERNAL EXON; p-value: 0.536." FT exon 3419..3579 FT /number=23 FT /note="INTERNAL EXON; p-value: 0.005." FT exon 3580..3753 FT /number=24 FT /note="INTERNAL EXON; p-value: 0.345." FT exon 3754..4030 FT /number=25 FT /note="INTERNAL EXON; p-value: 0.086." FT exon 4031..4263 FT /number=26 FT /note="INTERNAL EXON; p-value: 0.000." FT exon 4264..4386 FT /number=27 FT /note="INTERNAL EXON; p-value: 0.845." FT exon 4387..4503 FT /number=28 FT /note="INTERNAL EXON; p-value: 0.818." FT exon 4504..4646 FT /number=29 FT /note="INTERNAL EXON; p-value: 0.920." FT exon 4647..4751 FT /number=30 FT /note="INTERNAL EXON; p-value: 0.550." FT exon 4752..4950 FT /number=31 FT /note="INTERNAL EXON; p-value: 0.486." FT exon 4951..5065 FT /number=32 FT /note="INTERNAL EXON; p-value: 0.901." FT exon 5066..5307 FT /number=33 FT /note="LAST EXON; p-value: 0.151." FT CONTIG join(NC_006583:4597680...4597414, 4594270...4594186, FT 4589375...4589297, 4587568...4587329, 4584633...4584554, FT 4583620...4583498, 4581911...4581777, 4581578...4581520, FT 4580293...4579678, 4575223...4575122, 4574646...4574549, FT 4568132...4567980, 4567823...4567695, 4565387...4565279, FT 4565213...4565051, 4564850...4564680, 4561544...4561393, FT 4555556...4555436, 4554981...4554836, 4551978...4551814, FT 4549229...4549086, 4547951...4547871, 4544152...4543992, FT 4541998...4541825, 4539949...4539673, 4536677...4536445, FT 4531152...4531030, 4530319...4530203, 4530140...4529998, FT 4529898...4529794, 4528732...4528534, 4526574...4526460, FT 4524680...4524439) XX SQ Sequence 5307 BP; 1209 A; 1674 C; 1466 G; 958 T; other; atggctcagg acgcagccgc cttctctcga ggtggcgcga gcgctcccgg ggcggtgctg 60 cggccgcggc cgcacgtcaa taatccgcag acggaacgtt tccagctctt tctgccgaag 120 tcgctgaggc cgcacgcgag gcggaaccgg tgggcctgca gccaaggccc cggccccggc 180 cccggccccg gccccaccgc gcgggaagcc ccggcgctgc agcggggagc tcgggcgcgg 240 gctgcaggcg ggctccgggc cctgggggac acctgggatg ctctcatccg actatatgac 300 ccagcacatc cagcagcata ccagacaaca gtgatgtcga tggttatccc cgtgcacaag 360 ggttcccttt tctccacgtc tttgccaaca ccggttatct ctagtctgtt ttataccagc 420 cattctgaca gacagtccaa atatcctcga aagagcaccc ccaggagaaa caagcttgat 480 cactatgcca tcatcaagtt ccccctgact actgagtcag ccatgaagaa aacagaagac 540 aacaacacac ttgtgctcac tgtggatgtc aaggccaata agcaccagat caaacaggct 600 gtgaagaagc tctatgacat tgatgtggcc aaggtcaaca ccttgatcag gcctgatgga 660 gagaagaaag cgaccatcat cacctggtac cagccatcag tcatcatctg gtatctctcg 720 gtcactattc ggtactcacc atcatcacct gtaaagtggg acgactccat aattaaacaa 780 gaatataatt catcaggtgt acagttctat tttgaaaaca caggcctgct gcagagattg 840 gagatatcga ccaatgctct cacagactcc ccaggtgggc aggaatgtgg gcgcctgtcc 900 ctcactgtgg atagcagcat cttcaccacc ccacccagga acaagccttc gagggaagag 960 tccccccagc ctcatggagc tctcacctgg ggctcgtcca acaggacagc tctacgagaa 1020 gacagccctc cagacacctg ctctgcgtcc tgcctcatgc cctttcccct gcctgcgcag 1080 ctcacctgga gcccagagaa ggggccagtg ggaaccgcaa agtatcagcc aggacagacc 1140 atctgcggac tcaccgcctt cactgtgcta gaagcctccc gaaaggggaa acaggaatgc 1200 gtcctggcaa accttgggtc tgtgggcggc agcgggctgc tcgaggtgct gcccttgtcc 1260 cgagacaaaa actctgtggg cctcaagcag atgattgaga agcacaagaa tcaggacacc 1320 ccgcaagaca aggtggtcac tgtgaacaca tctccggggt ccctggaggg tgggtgcaca 1380 aatgcaccac taccccgccg gccattcgtg ggtgcaagga gctctcgttg gccgggctgc 1440 tggcccagaa gcgtgcaggt gtggccggcg cagggcacca ccgctctgag ggggcggctc 1500 cagctgcgcc tccgagtcca agcgcctcct gaccctgacg ggccctaccc tctgtccgcc 1560 tcgcaacaca caaaggccat cagtacacct cgatttgggc agaggaagca gggcggtgtg 1620 cagcgggacg cctcccgagc ggtgcccaag tatgcgagga gggagctcgg gacaggaagc 1680 agagggtggc accagaagcc tgacgtgctc cgtggcagag acagtgccga cggagtggca 1740 ggtggcttcc aagcatcttt agaagcaaaa gacaacagct ctccaggaaa gtctgggaca 1800 agtcaacctc ccagtggcaa ccgcgaggac agtgacggat cttttaaaac tcagatcatc 1860 tggtcggtca ccttctccat acagagttta tctgtgacac gtgaggcgta tctgcactgc 1920 gggctctgca cagatgggcc tccagaccct ccagggccct gtgattggac caaaaccacc 1980 ctccagcctg ctaatgtgag gatcttcctg gagtctgttc ctcaggactg tggccagaga 2040 ggtgcacttg gccccatgaa cagacccaag taccccgagg acaaggacct acggttgcaa 2100 ccagcagcag ctgggatgtg gccggccatg acttgctgca tgctcacggg atgcttccgg 2160 ggcctgatgg acaaggacat actcaccgcc ttccctagga catgccacat ctcgcccatg 2220 tgcccaagcc aagcccaacc catgagacag ctgatggcac agtgggcagc tggtaggagg 2280 agccgccgca cggcctgggg ccagctcaga cgctgcatgg ggtgcgccgg ccgggccgag 2340 ctctacaacg ttccaccctc ggagcagaag atcccagacc tggtctgctc accacccctc 2400 atggcagccc caggccagag aaataccaac ccgtccaggg ctgcagcagc cctagagacc 2460 cacctgcagg acgtggcgtc ctgcgatctg cacgtgggcc acgcccgtgg caccctgcga 2520 acacatgagg gttcagggcc aggaccccag agaaggaggc acactcaggt cctcattctg 2580 tggtctcccc caaaagtcgc catgaaggga ccccattatg ccacctttgc catgaccttg 2640 cagtggcttc taagtgccct cccaggaaca ctcccagtcc tgcgatggga tgaggtctgc 2700 acagtccagc cgttccacgt tcctgagcct ctcctgctca tcaaccccac cttcccatca 2760 cgatgccctg gaaacaacga tagcaccgca ctcacctggt actccggcca gaaacacgtg 2820 acttccgttg agccgggagg aaacgtcaca cagactcaga ccgaagcaca aaatccgaca 2880 aacagactct ctctggtgcc gccaccaaac accgcaggcc gtcccgcctc aggatggcag 2940 tcagacacac ctgagtctcc acgaacgcat cccagctcgg gtccctccac gcgggaggcc 3000 agggctccat acgatggtgg cagcaaagca caggccttac aggttgtcct cctgaacgtg 3060 gctcgagcac cgggctggtg ggctcccata tcaaatgcag tccatagttc ccattggggg 3120 acatcagatg gggacgctgg tggccacgga gagcaagtgc aagtgtggag tcccaccccc 3180 tttaggatca caggtgcaga ctttgtgtgt tggaataacc tcatgcacac ccagacgtgg 3240 ctgccctcga gtccctctga ctgtgccctg gatgccaaag cgggagtagt gtctgtgtca 3300 cgcacctgct ctgtttgtgg cgtctcagaa agcccagatg ttgggaagcc ccagaaatct 3360 gtgcaaggat gccccagtcc ccaggagacc catggagatc aaggtcatgc cgatggcgat 3420 ttcctcagcc atccccagaa ctttccaaca ttggaacatg ggcatgagga aatggtgatt 3480 atggagggac agactcctcc aaatggctcc agcggcgact gtcatgccac agaacgcctc 3540 caagagcctg gaggtgttct gcaggtggaa gatgaacagg tgatcaacac aggagaacag 3600 ggactgttat ccagtttcat cctctgcttc aaggccgaga gccccgacac atgctgggcc 3660 ctcagcaaat ggctacagga ggcaccaggg cccagacgaa ccagccacca cttgctgcct 3720 gggggcatag ggcgagacgc ccaacaggcc aggaggtcct cccggccccc acccagacca 3780 ctaactaggg tgctcatcgg agggaagcgt gagctattta accttcttca gatgtttgcc 3840 ctcagtaaag acacttcaaa gagggctttg gggtttaccc tggtccagca aacacttcaa 3900 accactgctg tgatggatgg agcctccccc caggagcccc agcaaaggcc ttactcacct 3960 ttcagagaag ccggtcccct cacgggcctg cagctcacag gtggccctgc tggcatggcc 4020 agggaatttg aaatgtcagg agtattcaca gacgtgctct ctgcagtggg caggtgtgca 4080 gatacgcagg tgggggcacc aagagctgag gaggcactcg gtctgtttcg gatgctagac 4140 acagttgcca gaatcccaga tgtgcatcat ttcgacctaa aacacagcag tgtctcctcg 4200 tctgcagcca gcatgccagg gccccgactc cctggctcag gaggcttcaa gccccagctc 4260 caggatccat gtggcagcca ttggccggtg ccagctaacc aatgccaggg gcttcgatgc 4320 ctccggggcc acactggatt ccagaccgcc ttggagaacg acggccgcag agtcctagct 4380 aggcctcttt acaaaaacac ctcctccacc ctccccccca ccaaggaggc ctcggcacag 4440 tccccaggca gtgagacctg gcacagctac cagggcttgg atcttggtaa ccaagtcaag 4500 cagcgtcaag aaaaagccaa ccactcactg aatccaccca cgcaatgtgc cgaggggcca 4560 ggagatcggc acaggccacc tcacaaggct tccaagcacc gacgtgtccc cacaggggcc 4620 gcgggagttg gtgccaggcc ctgcaggagg gaccagtgtt tgatccacac aggtcaccaa 4680 gaccccagcc tcgctctgag cacggagacc tccgtagttg ccttttatcc atttgtatct 4740 tctaactccc gggagtttaa agtccatttt tttaaaacca caacagtcca catcctcaca 4800 ggtggggaaa tctttgatgt tgatataact gtaccgcggg acaagggcag atgctgtggg 4860 ggacaggctc tctggtatta tcataacaac ttcacagacg agggaagagg gaccccaaag 4920 agggaaggcg tccccaaggt cacacagcag gctgatgaag aggagccggt ggtggggagg 4980 ctgcccggct gggagccctg cgctcactcg agctcctgct tcagtgccac ggccagcggc 5040 agggctgtcg gcgccctcag agcagatccc acccctaaca tcccaggtgg tgtggcccca 5100 cttgctcccc tgcaagccct cctcccatca catgagccca tggcacccaa gcagctcacc 5160 ctttgtcact cggcatccca ccagctggtt ggggtgacgc atgttccaac acctcccaga 5220 gatgcctgca tgtcctgtag cggcggctgc ctttgtgtgg gtttccccat ggccaaccct 5280 gaaagccttt atgatggctt cagttaa 5307 // ID NC006583_72; SV 1; special; RNA; MAM; 324 BP. XX AC NC006583_72; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_72; NC006583_72. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..324 FT /organism="Canis familiaris" FT CDS 1..324 FT /protein_id="NC006583_72" FT /db_xref="trGEN:NC006583_72" FT /translation="MSGAGKRCNSDQDSPPLKELTEALLRNAACERHGTGRDA FT WNADLDGEEEEPLGRELAPKTATPYMQVSGPEPRAHPGCPTNQAHTDDRETQT FT RKLTRSRNIDGPYLS" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '-' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..119 FT /number=1 FT /note="FIRST EXON; p-value: 0.793." FT exon 120..156 FT /number=2 FT /note="INTERNAL EXON; p-value: 0.801." FT exon 157..246 FT /number=3 FT /note="INTERNAL EXON; p-value: 0.307." FT exon 247..324 FT /number=4 FT /note="LAST EXON; p-value: 0.030." FT CONTIG join(NC_006583:4613224...4613106, 4611761...4611725, FT 4604439...4604350, 4601347...4601270) XX SQ Sequence 324 BP; 96 A; 92 C; 93 G; 43 T; other; atgtcaggtg ctggcaagag atgtaacagt gatcaagaca gccctcccct caaagagctt 60 acagaggcgc tgctgagaaa tgcagcctgt gagcgtcatg gcacaggacg ggatgcatgg 120 aatgcagacc tagatgggga agaggaggag ccactgggcc gggagttagc accaaagacg 180 gccacaccat acatgcaagt ctcgggccct gagccccgtg cacaccctgg atgccccacg 240 aaccaggcac acactgacga cagggaaacg caaacacgca agctcacacg cagcaggaac 300 atcgatggac cttacctaag ctaa 324 // ID NC006583_73; SV 1; special; RNA; MAM; 669 BP. XX AC NC006583_73; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_73; NC006583_73. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..669 FT /organism="Canis familiaris" FT CDS 1..669 FT /protein_id="NC006583_73" FT /db_xref="trGEN:NC006583_73" FT /translation="MAKNLATIEQIRTTSDSNASCSQLRLPGLSWRRVNVSCA FT KMSFSGYSVKLRVERTRPTCTGSPMTTGYEQVPKNKWWHHTKSAPTNMAVLVG FT PSLEALIAPSGTKPLPELGGGTAFARLANQPAVQAAAGSPGGHPGPWMYSGPG FT TKAPAKLDCNRGAAISPVLRDLRERVVLSYEHSPATTSAAGTQNLSIASILGL FT PSHHTASSFPNPYPQQQQTWSPSQ" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '-' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..315 FT /number=1 FT /note="FIRST EXON; p-value: 0.429." FT exon 316..477 FT /number=2 FT /note="INTERNAL EXON; p-value: 0.281." FT exon 478..669 FT /number=3 FT /note="LAST EXON; p-value: 0.464." FT CONTIG join(NC_006583:4625118...4624804, 4619773...4619612, FT 4618006...4617815) XX SQ Sequence 669 BP; 155 A; 214 C; 171 G; 129 T; other; atggccaaaa acctggcaac cattgagcag ataagaacta cctcagactc caatgctagc 60 tgttctcagc tcaggctacc cgggctttct tggaggcgtg taaatgtgag ctgcgccaaa 120 atgagtttct ctggatactc tgttaaactt cgtgtggaaa ggacccgtcc tacctgtact 180 gggtctccca tgaccactgg gtatgagcag gtgcccaaga acaaatggtg gcaccacacg 240 aagtccgccc caactaacat ggcggtgctg gtgggcccta gcctggaggc actcattgct 300 ccttcaggca cgaagccgct gcctgagctt gggggcggca cagccttcgc acgtcttgcc 360 aaccagccag cagtacaggc tgcagcaggt agccctgggg gccaccccgg gccttggatg 420 tacagcgggc caggaaccaa agctcccgca aagctagact gcaacagggg agcagccatt 480 tcaccagttt tacgtgactt acgtgagcgt gtggttttat cctatgagca cagccctgcc 540 acaaccagcg cagcagggac ccagaacctc tccatcgcca gcatcctggg gctaccaagt 600 catcacacag cctcctcctt ccccaacccc tacccccagc aacagcagac ctggtctcca 660 tctcagtag 669 // ID NC006583_74; SV 1; special; RNA; MAM; 555 BP. XX AC NC006583_74; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_74; NC006583_74. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..555 FT /organism="Canis familiaris" FT CDS 1..555 FT /protein_id="NC006583_74" FT /db_xref="trGEN:NC006583_74" FT /translation="MAHGGAFSGAGADSCVLWGQWEMKLVAAASTRHLEAAYL FT MGPSLGRASVGGPPVQALLLPPWSLHLLASDSELPPDKHLGDGDGVGAGRTLA FT QVTLSGPVAGQFWGPVSGAFTSLWDETDGDLLIKGLQTALFSGDNMEMVTRRE FT GTMQTVPLSGGPPSLQDPSPEPAAAPLPTAPEPTPTRRD" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '+' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..555 FT /number=1 FT /note="SINGLE EXON; p-value: 0.858." FT CONTIG join(NC_006583:4634396...4634950 FT join(NC_006583:4634396...4634950) XX SQ Sequence 555 BP; 104 A; 171 C; 181 G; 99 T; other; atggcccacg ggggggcatt ctcaggagca ggagcggatt cctgtgtctt gtggggacag 60 tgggagatga agctggtggc agcagcgagc acccgtcacc tggaggccgc ctacctcatg 120 gggcctagcc tggggagagc gtctgttgga ggcccccctg tccaggcctt gctgctccca 180 ccgtggtccc tgcacctcct ggccagtgac tcagagctgc cccccgacaa gcacctcggt 240 gacggcgatg gggtgggagc aggtaggact ctggcccaag tgacactgtc cgggcccgtg 300 gctgggcaat tctgggggcc ggtttctgga gccttcactt ccttgtggga tgagacagat 360 ggagatttgc tcatcaaggg tttgcaaact gctcttttca gtggagacaa catggaaatg 420 gtcacccgca gagaagggac catgcaaaca gtgcccttat cgggggggcc acccagcctc 480 caggacccgt ccccagagcc agcagccgcc ccgctcccga ctgctcctga accaaccccg 540 accaggagag actag 555 // ID NC006583_75; SV 1; special; RNA; MAM; 999 BP. XX AC NC006583_75; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_75; NC006583_75. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..999 FT /organism="Canis familiaris" FT CDS 1..999 FT /protein_id="NC006583_75" FT /db_xref="trGEN:NC006583_75" FT /translation="MEQPAPERVPAVKARTRQPCQEHCALPHVGNYSRAFQAG FT FPLASRSPEDTGCESQTPQLEKPHTGCLLERQAEHPSYATHTVTARHITHMSK FT SPQNHFNRIIVTHDEMEPSLCGQRQAGLARSVNTVGRAQDTCSVRPGGGSAEP FT RPHIHRLAVLGCGLRCSPTSPAHGLFICRRRKKEKVHGISPEIQGTVVDALRD FT TRHNLFLKKPPPPPNQCNTFILSPPLAPGIWTTEGLLPLLTPLISGNKAKCCR FT FLFHLILMITLKGDTITAILQNQKLRFRDTESPGTGHPCLHSCLEERGRKVST FT QAWPGPCGSTVGRRWMLTRACEDPAPGL" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '-' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..151 FT /number=1 FT /note="FIRST EXON; p-value: 0.602." FT exon 152..180 FT /number=2 FT /note="INTERNAL EXON; p-value: 0.641." FT exon 181..355 FT /number=3 FT /note="INTERNAL EXON; p-value: 0.657." FT exon 356..567 FT /number=4 FT /note="INTERNAL EXON; p-value: 0.301." FT exon 568..999 FT /number=5 FT /note="LAST EXON; p-value: 0.205." FT CONTIG join(NC_006583:4642353...4642203, 4641539...4641511, FT 4640005...4639831, 4639046...4638835, 4638613...4638182) XX SQ Sequence 999 BP; 230 A; 325 C; 281 G; 163 T; other; atggagcagc cagctcccga gcgggtcccc gcggtgaagg ccaggacccg ccagccctgc 60 caagagcact gtgcgctccc ccacgtgggc aactactcca gggccttcca agccgggttc 120 cctctggcct ctcggagccc agaggacaca ggatgtgaat ctcagacgcc gcaactggaa 180 aaaccgcaca cgggctgcct gctggagagg caagccgagc atcctagcta tgctacccac 240 acggtgacgg ctcggcacat aacacatatg tcaaaaagcc cgcagaacca ctttaaccgc 300 ataattgtca cacatgatga aatggaaccc agtctctgtg ggcagcgcca ggcaggcctg 360 gcacgctctg tgaacactgt gggaagagcc caggacacct gctcggtgag gcctggaggg 420 ggttccgctg agccgcggcc acacatacac cggctggcgg tcctgggctg cggcctccgc 480 tgctcgccca ccagccctgc ccacggcctc ttcatctgca ggaggagaaa gaaggaaaaa 540 gtccatggaa tcagcccgga aatccagggg acagtggttg atgccctgcg ggacacaagg 600 cacaatctgt tcctgaagaa gcccccccca ccccccaacc agtgtaacac gttcattctc 660 tccccacctc tagcgccagg aatctggaca acggaaggcc tcctgccgtt actgactccc 720 ctcatttccg ggaacaaggc taaatgctgt cgatttttat ttcatctaat cctcatgata 780 accctgaaag gagacacaat cactgccatt ttgcagaacc aaaaactgag atttagagac 840 acggagtcgc caggcactgg gcacccctgc ttgcacagct gcctggagga gagagggagg 900 aaggtgagca cccaggcctg gcccggcccc tgcgggtcca cagtcgggcg ccggtggatg 960 ctgaccaggg cctgcgagga cccggcaccc ggtctgtga 999 // ID NC006583_76; SV 1; special; RNA; MAM; 2940 BP. XX AC NC006583_76; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_76; NC006583_76. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..2940 FT /organism="Canis familiaris" FT CDS 1..2940 FT /protein_id="NC006583_76" FT /db_xref="trGEN:NC006583_76" FT /translation="MNTVGTPKEYYCQTKSGNMETASNRKEDLSQEFKRVPPS FT PELTVKIYLKDAPFSDNQAAPGNINTREWLWNSSIPVGIRLMVELGEGQFHCI FT TEDLKAFLPAGGPLRARQGCPCKRRQPPGLEGSSLRQRRSELVRPKAPFGAVT FT FCFRDPAKQHASRHLQPASIWYLRNNQGTGHAGEGRMGTGGLGGSPCPKESTH FT HALLPPESSMDKDEEPREPWRWGLLEAIPSLGWSAPRVKARVSGHHLSSQCLH FT RHLVAVDAGALTGGGQPSFHTRQTPPGRLHTDIPGLLPSKSGHLVAYASLSPS FT LPAGSRLVVVVAGAESSSLVATGPSHPARDPVSPDRRSTSSGSACSPGRNLMG FT RSSPTRWLPGQHEGQLEVPEDQGEPVRGCTVTTATAAFPANVSLKLSHSFLPN FT AAKSAPAGRRNRFPASHERQTRTRVTPGLTKEEGCRPPGPTRPDPTRRARGCP FT GACPSPASPASPHGAGTGGPESTKDVQGLDPRPHVSGSCNCGSSCGSDPGEED FT ITHWTGGPAVPHNWGKAVLVHSTHQAPHQRPYDEQGGHSIGGLHQQGSTRTGV FT YSDRGFQGAENPEASGGSVSTPCPLRDLSMSALQQRLHVHSPVEPPRSEEAFA FT DASEMRYQYKQTHVTVNRARNALWGVMSEGPGLGHAEPRNVDYGGVDREGPPA FT RAKQPVLVPTVSKDSIRPCRDRCIQAIDSQKEQNEEGPQKRHMRECAGQTPLM FT RPRLCYVPDPTRQALHRRSSTDHKCSASLVTGRMQVAATQRHTDTASEQGYQG FT SAATTHRGHCARSKPPVTSQEQGDQQREKHSGPHADVAQPHRVDPRVRVASFG FT TRMVGPMSHVAHGARTQALGRRWLYTAPDRIASPARAGEDMAGPAEPRPGPLR FT PCRLFCGDLTPGATGRSPSCETASCKPSQRDTKTKAPPAGAQGEAERTVSVHP FT RVLSLAVCASTSVSPAASVEDIPGPLIPAARRTSSSSCS" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '-' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..102 FT /number=1 FT /note="FIRST EXON; p-value: 0.952." FT exon 103..259 FT /number=2 FT /note="INTERNAL EXON; p-value: 0.961." FT exon 260..393 FT /number=3 FT /note="INTERNAL EXON; p-value: 0.915." FT exon 394..517 FT /number=4 FT /note="INTERNAL EXON; p-value: 0.937." FT exon 518..755 FT /number=5 FT /note="INTERNAL EXON; p-value: 0.144." FT exon 756..877 FT /number=6 FT /note="INTERNAL EXON; p-value: 0.896." FT exon 878..965 FT /number=7 FT /note="INTERNAL EXON; p-value: 0.991." FT exon 966..1078 FT /number=8 FT /note="INTERNAL EXON; p-value: 0.481." FT exon 1079..1153 FT /number=9 FT /note="INTERNAL EXON; p-value: 0.587." FT exon 1154..1259 FT /number=10 FT /note="INTERNAL EXON; p-value: 0.746." FT exon 1260..1491 FT /number=11 FT /note="INTERNAL EXON; p-value: 0.579." FT exon 1492..1751 FT /number=12 FT /note="INTERNAL EXON; p-value: 0.571." FT exon 1752..1876 FT /number=13 FT /note="INTERNAL EXON; p-value: 0.798." FT exon 1877..2040 FT /number=14 FT /note="INTERNAL EXON; p-value: 0.837." FT exon 2041..2075 FT /number=15 FT /note="INTERNAL EXON; p-value: 0.873." FT exon 2076..2167 FT /number=16 FT /note="INTERNAL EXON; p-value: 0.838." FT exon 2168..2223 FT /number=17 FT /note="INTERNAL EXON; p-value: 0.347." FT exon 2224..2331 FT /number=18 FT /note="INTERNAL EXON; p-value: 0.797." FT exon 2332..2940 FT /number=19 FT /note="LAST EXON; p-value: 0.680." FT CONTIG join(NC_006583:4696966...4696865, 4684599...4684443, FT 4683995...4683862, 4683223...4683100, 4681233...4680996, FT 4663551...4663430, 4663265...4663178, 4662359...4662247, FT 4661330...4661256, 4661051...4660946, 4660835...4660604, FT 4659398...4659139, 4658826...4658702, 4657045...4656882, FT 4655136...4655102, 4653423...4653332, 4653249...4653194, FT 4649939...4649832, 4648546...4647938) XX SQ Sequence 2940 BP; 632 A; 972 C; 886 G; 450 T; other; atgaataccg ttggaacacc caaagagtat tactgccaaa ccaaatccgg caatatggaa 60 acagcatcaa accgcaaaga ggatttatcc caggaattca agagggtgcc tccatcccct 120 gagctgacag tgaagatata tttgaaggat gccccatttt cagataacca agcagcacct 180 ggaaacatca acacacggga gtggctttgg aactcgagca tccccgtggg aataaggctt 240 atggtggaac tgggcgaagg acaatttcac tgcataactg aagatttgaa ggccttcctc 300 ccagctggcg gcccgctcag ggcccgacaa ggatgtccct gcaagcgcag acagccccca 360 gggctagagg gctcctccct gagacaaaga aggagtgagc tggtgagacc aaaggcccca 420 tttggtgccg tgaccttctg tttcagggac ccagcaaagc agcatgcatc ccgccacctg 480 cagccagcgt ccatctggta tctcagaaac aaccagggga caggccatgc aggagaaggg 540 aggatgggaa ccggagggct agggggcagc ccttgcccaa aggagagcac gcaccatgct 600 ctgctgcccc ctgagtcctc aatggacaag gatgaggagc cccgggagcc atggagatgg 660 ggtcttctgg aagccatccc gagcctgggc tggtctgctc ccagagtcaa ggctcgtgtc 720 tctggccacc acctctcatc ccaatgtcta cacaggcatc tggtggctgt ggacgccggt 780 gcgctcacgg gaggtgggca accgtcgttc cacacccgcc agacaccccc cggacgcctg 840 cacactgaca tcccagggct ccttcccagc aagagtggtc acttggtggc ctatgcctcg 900 ctttcccctt ctcttcccgc gggtagtcgg ttggtggtgg tcgtggctgg tgctgagtcc 960 tccagccttg tggcaacagg tcccagccat cctgctcggg accctgtgtc ccccgacaga 1020 cgctccacgt ccagcggctc cgcatgtagc ccgggccgga acctgatggg acgaagcagc 1080 ccaacacgct ggctgcccgg ccaacacgag ggacaactgg aagtacctga agaccagggc 1140 gagccggtga gggggtgcac agtaaccacg gccacggccg ctttccccgc gaatgtctca 1200 cttaaactgt cacattcctt cctcccaaac gctgccaagt ctgcgcccgc aggtcgcaga 1260 aacaggtttc ccgcgtccca tgaacgtcag acacgcaccc gagttacgcc cgggctgacc 1320 aaggaggagg gctgccggcc gcccggcccg acccgacccg acccgacccg ccgcgcacgc 1380 ggctgcccag gggcctgccc ctcaccagcg agccccgctt ccccacacgg cgcgggcacc 1440 ggcggccccg agagcacaaa ggacgtgcag gggctggacc ccaggcccca cgtttctggg 1500 tcatgtaatt gtgggtcatc ctgcggatca gatcccggtg aggaggacat cacccactgg 1560 acaggagggc cggctgtccc ccacaactgg ggcaaagctg tccttgtgca ctccacccac 1620 caggcacctc accagcgacc ttatgacgag cagggtggtc acagcatcgg gggtctacac 1680 caacaggggt ctacacggac aggggtctac agcgacaggg ggtttcaggg cgctgagaac 1740 ccggaagcaa gcggaggctc tgtgtccact ccatgtccac tccgcgacct ctccatgtct 1800 gctctccagc agaggctcca tgtccactct ccagtggagc ctccccggtc agaggaagcg 1860 tttgcagacg cgtctgaaat gcgataccag tataaacaaa cgcatgtcac tgtcaacaga 1920 gcgaggaatg ccctctgggg ggtcatgtcg gaggggccag ggctggggca tgcagaaccg 1980 cggaatgtgg actacggcgg cgtggacagg gaagggccac ccgcccgggc gaagcagccg 2040 gtcctcgtcc caactgtctc caaggacagc atcaggccgt gccgcgatcg ctgcatccag 2100 gccattgact ctcaaaagga gcaaaatgag gagggtcctc agaagcgcca catgcgtgag 2160 tgtgcagggc agacacccct gatgcggccc cgactctgct acgtcccgga ccccaccagg 2220 caggcacttc accgacgatc atctacagat cacaaatgct cagcatcact ggtcaccggg 2280 cggatgcaag tggctgccac gcagaggcac actgacacag cttcagagca gggctaccag 2340 ggcagtgcgg ccacgactca ccggggccac tgtgctcgga gcaaaccacc tgtgacatcg 2400 caggaacaag gcgaccagca gcgggaaaag cacagcggcc cccatgcaga cgtagcccaa 2460 ccccacaggg tggaccccag ggtacgagtg gcctcgttcg gtaccaggat ggtgggccca 2520 atgtcccacg tggcccacgg agcccgaacc caggcactcg ggcgcaggtg gctctacaca 2580 gcccctgaca gaattgcgtc cccagcccgc gcaggtgagg acatggcggg gccagcagag 2640 ccaaggccag ggcccctgcg cccctgccgg ctgttctgtg gggacctgac accaggggcc 2700 acgggcagga gcccctcctg tgaaacggca agctgcaagc cttcccagcg ggacacgaag 2760 acaaaggcgc ccccagccgg ggcccagggg gaggcagagc gcaccgtgtc tgtgcatccg 2820 cgggtcctca gcctggctgt gtgcgccagc acctctgtga gccccgcagc tagtgtggag 2880 gacatcccgg gacccctcat cccagctgcc cggaggacgt cctcctcctc ctgcagctga 2940 // ID NC006583_77; SV 1; special; RNA; MAM; 1872 BP. XX AC NC006583_77; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_77; NC006583_77. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..1872 FT /organism="Canis familiaris" FT CDS 1..1872 FT /protein_id="NC006583_77" FT /db_xref="trGEN:NC006583_77" FT /translation="MPAGGVMLSKSRVHWGPMAMTLLCSPIVGQAWIRGMTVQ FT GHDGPGAQREYGFDFQNSVEAPPALGGPTPWTRLCAPSSLASELVTSHSTVSE FT RPEAGKRRVCTRAVATASEGLSLPGRPPPTLESRRTPSVPGHLVDMLNSVHSP FT SPLATRRFRDDGVSRLAAYSLPVNSHPQCAEARMLDTTTLGVMVGEAGARTSK FT GEHNKEGNKWTMGTQWDFKDGDQVHLVGLPPQRDCSIREGKQWKHRLGQWLLR FT RVTAEKIHILLELGFDRKSHFERLSQFENRQKCFAPYDTGNCTYQHTAQSNSA FT GNEGHSYGWNGPEGHGLPCWRGMHPGSLAVKPTSLTCILTSLRTALKFLPVMT FT LEGSSSLSMQGAGVAPAPCSVGEGGSLLWGTNLLQHVGSWVQRKRVSEARPRS FT CQAARTALEAAVLDGSRPLNKCSASTPWSPTHSARKKCSEVPRPGSDGEARLS FT PNVEESMPQGMFPGADGSRIKENLFTDQLLDLGINTLKSFISLNKWKENEAMC FT HVALCHHTGNQLRVLHAFSHSLLQMPLKTDQSKVTKPTQRDPGSDVGMLVGGI FT ISCSPRKCCGLGDAPQHLVQKWPGEMCVVIKTLTCLVLNNKAPGPSSIVLPAV FT G" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '+' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..143 FT /number=1 FT /note="FIRST EXON; p-value: 0.014." FT exon 144..257 FT /number=2 FT /note="INTERNAL EXON; p-value: 0.021." FT exon 258..327 FT /number=3 FT /note="INTERNAL EXON; p-value: 0.010." FT exon 328..469 FT /number=4 FT /note="INTERNAL EXON; p-value: 0.003." FT exon 470..600 FT /number=5 FT /note="INTERNAL EXON; p-value: 0.005." FT exon 601..865 FT /number=6 FT /note="INTERNAL EXON; p-value: 0.200." FT exon 866..1045 FT /number=7 FT /note="INTERNAL EXON; p-value: 0.822." FT exon 1046..1191 FT /number=8 FT /note="INTERNAL EXON; p-value: 0.549." FT exon 1192..1363 FT /number=9 FT /note="INTERNAL EXON; p-value: 0.372." FT exon 1364..1446 FT /number=10 FT /note="INTERNAL EXON; p-value: 0.376." FT exon 1447..1562 FT /number=11 FT /note="INTERNAL EXON; p-value: 0.261." FT exon 1563..1641 FT /number=12 FT /note="INTERNAL EXON; p-value: 0.241." FT exon 1642..1767 FT /number=13 FT /note="INTERNAL EXON; p-value: 0.122." FT exon 1768..1872 FT /number=14 FT /note="LAST EXON; p-value: 0.812." FT CONTIG join(NC_006583:4703642...4703784, 4706532...4706645, FT 4710621...4710690, 4712008...4712149, 4714270...4714400, FT 4726193...4726457, 4726654...4726833, 4726865...4727010, FT 4728278...4728449, 4732237...4732319, 4738942...4739057, FT 4742164...4742242, 4746622...4746747, 4755976...4756080) XX SQ Sequence 1872 BP; 421 A; 523 C; 560 G; 368 T; other; atgcctgcag gtggtgtgat gctttccaag agccgagtgc actgggggcc catggccatg 60 accctcctct gcagccccat tgtgggtcag gcctggatca ggggcatgac ggtccagggg 120 cacgacggtc caggggcaca acgagaatac ggatttgact ttcagaactc agtagaggca 180 ccacctgccc tggggggccc gacaccctgg acccgcctct gcgcaccatc ctccttggct 240 tccgagctgg tgacaagcca ctcgactgtc agcgagcgac ctgaggcagg aaagaggaga 300 gtttgcacaa gggccgtggc cacagcgtct gaaggactct cactgccggg taggccccca 360 cccaccctgg aatccaggag aaccccctca gtaccaggtc atctggtgga catgcttaat 420 tctgtccaca gccccagtcc cctggccact cgcaggttca gggatgacgg tgtctccaga 480 cttgcagcat actccctgcc tgttaacagc catccacaat gtgcagaggc acgcatgctc 540 gacaccacca cgctcggtgt gatggtagga gaagctggtg cacgcacgtc taagggcgag 600 cacaacaaag aagggaacaa gtggacaatg gggactcagt gggacttcaa agatggagac 660 caagtccacc tggtgggact cccgccccag agggactgtt ccatcaggga aggaaaacag 720 tggaagcatc gtcttgggca gtggcttctg cgaagagtca cagcagagaa gattcacatc 780 ctgttggagt tggggtttga caggaaaagc cattttgagc gtctgagcca gtttgaaaat 840 aggcagaagt gttttgctcc atatgacaca ggcaactgca catatcagca cacggctcaa 900 agtaattccg ctggaaatga gggccactct tatggatgga atggccctga gggccacggc 960 ttgccctgtt ggcgcgggat gcaccccggg tctctggccg tcaaaccaac atctctcacc 1020 tgcattctca cttctctgag aacagctctg aaattccttc ctgtgatgac cctcgagggc 1080 tcctcctcgc tgtccatgca gggtgccggg gtggccccag cgccgtgctc cgtgggggaa 1140 ggtggctcac ttctgtgggg cactaacctg ctgcagcacg ttgggagctg ggttcagagg 1200 aagcgggtca gtgaggccag gcctagaagc tgtcaggccg cacggacagc cctggaggcg 1260 gcggtactgg acggcagccg gcccttgaac aagtgcagtg cgtccacgcc ttggagccct 1320 actcactcgg caagaaaaaa atgctccgag gtgccgcggc ctgggagcga tggggaagcc 1380 cggttgtccc ccaacgtgga ggaaagcatg cctcaaggga tgtttccagg ggcagatggc 1440 tctcgcatca aagagaactt gttcacagac cagctgttgg atctcgggat caacacgctg 1500 aagtcgttca ttagtctcaa taagtggaag gagaatgaag cgatgtgcca tgtggctcta 1560 tgtcaccaca ctggtaacca gctacgggtg ctacatgcgt tttcacactc actgctgcaa 1620 atgcccctga aaactgacca gtctaaggtc acaaagccaa ctcagagaga cccaggctct 1680 gacgttggca tgctggtcgg gggcatcatc tcctgcagcc cccggaaatg ttgtgggtta 1740 ggtgatgctc cccagcacct ggtgcagaag tggcctggtg aaatgtgtgt cgtgattaag 1800 actcttacgt gcttggtgct caacaataag gctccaggac caagcagcat cgtcttgccg 1860 gcagttggct ga 1872 // ID NC006583_78; SV 1; special; RNA; MAM; 1206 BP. XX AC NC006583_78; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_78; NC006583_78. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..1206 FT /organism="Canis familiaris" FT CDS 1..1206 FT /protein_id="NC006583_78" FT /db_xref="trGEN:NC006583_78" FT /translation="MVHSGFTLRCRSVQDRGVTTVSGMVVPQGGGLDEKDFGG FT FNAANVGVSEVDAYTSRTLTSMPMCVSTYSTYAQGPVPLWTLFCWILVQGGRQ FT NVSHEQGVRICRVHLVHQLLQPRSVSRSLVTPGAGRRNPLTFDLWLKAGILLT FT ECMIVLSANGERTQRSWLYSSYHRLHSPPNPNQRPPHSPAFHHQCPHGPHMGF FT DFPSISGIQGRSSRSMHRMLTKGLEGSGEDSRKKQHVQRPRAGNMAPVEEEIY FT AGGAWPQVRLETGEGVQTPQASGGAASYISLEMERKLQEIAVPYQREAEVTLK FT CFFADTAVRGFCGHAGISGLSLIVGEDNSEGAGRTQRLGFPDPGDLSNGEWRS FT FWKAEVPRAAACSQRYPPGHAPRHVASSTQPVPPPSTCHGCGNA" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '+' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..50 FT /number=1 FT /note="FIRST EXON; p-value: 0.679." FT exon 51..84 FT /number=2 FT /note="INTERNAL EXON; p-value: 0.545." FT exon 85..147 FT /number=3 FT /note="INTERNAL EXON; p-value: 0.902." FT exon 148..219 FT /number=4 FT /note="INTERNAL EXON; p-value: 0.984." FT exon 220..438 FT /number=5 FT /note="INTERNAL EXON; p-value: 0.029." FT exon 439..621 FT /number=6 FT /note="INTERNAL EXON; p-value: 0.027." FT exon 622..790 FT /number=7 FT /note="INTERNAL EXON; p-value: 0.028." FT exon 791..833 FT /number=8 FT /note="INTERNAL EXON; p-value: 0.329." FT exon 834..967 FT /number=9 FT /note="INTERNAL EXON; p-value: 0.299." FT exon 968..1093 FT /number=10 FT /note="INTERNAL EXON; p-value: 0.296." FT exon 1094..1206 FT /number=11 FT /note="LAST EXON; p-value: 0.370." FT CONTIG join(NC_006583:4757739...4757788, 4760802...4760835, FT 4761440...4761502, 4761656...4761727, 4764349...4764567, FT 4769095...4769277, 4773565...4773733, 4776297...4776339, FT 4777224...4777357, 4778782...4778907, 4789273...4789385) XX SQ Sequence 1206 BP; 258 A; 327 C; 368 G; 253 T; other; atggtccaca gcggcttcac tttaaggtgc cgctctgtgc aggacagagg tgtgaccaca 60 gtgtctggaa tggtggtccc acagggtgga gggttggatg agaaggattt cgggggcttt 120 aatgctgcca atgtgggtgt gtctgaggtt gatgcctata cctctaggac actgacgtct 180 atgcccatgt gtgtctccac ctacagcacc tatgcccagg gcccggtgcc cctgtggacg 240 ctgttctgct ggatccttgt tcaggggggc cggcagaatg tgtcccatga acagggggtc 300 agaatatgca gggtccacct tgtgcatcaa ctgctacagc ctcgctctgt gtcccggagc 360 cttgtgaccc cgggagcagg gcggaggaac ccccttacct tcgacctttg gttgaaagca 420 ggcatcctgc tgaccgagtg tatgatcgta ttgtcagcaa atggtgaacg aacccagcgg 480 tcttggctct actcctccta ccacaggctt cattcgccac caaatccaaa ccagcgtccc 540 cctcactcac ctgcgttcca ccaccagtgt cctcatggcc cgcacatggg gttcgacttc 600 cccagcatct caggcatcca gggacggtca agcagaagca tgcataggat gttgactaaa 660 ggtttggagg gcagtggaga ggattctagg aagaagcagc atgtgcaaag gcccagagca 720 gggaacatgg ccccagtgga agaagagatc tatgctgggg gtgcttggcc ccaggtgaga 780 ctggagacag gggagggggt gcagacccca caagcctccg gaggggctgc cagctacatc 840 tcattggaaa tggagagaaa actccaagaa attgcagttc cttatcaaag agaagctgaa 900 gttacactca agtgcttctt cgcagacacg gctgtcaggg gcttctgtgg ccacgcaggc 960 atctcagggt tgagcctcat tgtgggtgag gacaactctg agggtgcagg aaggacacag 1020 aggttgggtt tccccgatcc tggggacctt tccaacgggg aatggaggtc gttttggaag 1080 gctgaagttc ccagggctgc tgcgtgctcg cagcgctacc cccctggcca tgctccgcga 1140 catgtggcat ccagcaccca gcccgtgcct cctccaagca cgtgccacgg ctgtgggaat 1200 gcatga 1206 // ID NC006583_79; SV 1; special; RNA; MAM; 603 BP. XX AC NC006583_79; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_79; NC006583_79. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..603 FT /organism="Canis familiaris" FT CDS 1..603 FT /protein_id="NC006583_79" FT /db_xref="trGEN:NC006583_79" FT /translation="MVGEFLAFQDLQCRGGWMCEIKGQNLAGKRLMDQAIHQP FT MQVIPPGSAHRLGYYLSTRVLKTSATTPFARNVKASNAEMQSIFRRWRKTIRL FT PWFGRLPQSPSKGANAPLKVRVKIQRCGVWGLGLAFTFVAADHRASKPVQCPP FT RLEMGHPPRRRPGGSCLAHAPLTSDEDSLSRWLIMDWRRCTRDATIAAEDGGH FT RK" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '+' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..117 FT /number=1 FT /note="FIRST EXON; p-value: 0.293." FT exon 118..242 FT /number=2 FT /note="INTERNAL EXON; p-value: 0.436." FT exon 243..500 FT /number=3 FT /note="INTERNAL EXON; p-value: 0.456." FT exon 501..603 FT /number=4 FT /note="LAST EXON; p-value: 0.958." FT CONTIG join(NC_006583:4799300...4799416, 4802444...4802568, FT 4804109...4804366, 4804996...4805098) XX SQ Sequence 603 BP; 141 A; 156 C; 169 G; 137 T; other; atggtggggg agttcctggc atttcaagac cttcagtgcc gtggagggtg gatgtgtgag 60 ataaagggtc agaatttggc tggaaagaga ctcatggatc aggccataca tcaacctatg 120 caagtaatac ctccaggcag tgcccaccgt ttgggatatt acctgtctac gcgggtttta 180 aagacttctg ctacaacacc ctttgctcga aatgtcaaag cctccaatgc agaaatgcaa 240 tctatcttca ggagatggag gaaaaccata cgtcttccat ggttcggtcg tcttcctcaa 300 tcaccttcaa aaggtgctaa tgccccattg aaggtccgcg tgaaaataca gcggtgtggg 360 gtctggggtc tggggctggc ttttaccttt gtcgctgcag accaccgagc atccaaacca 420 gttcagtgtc cacctcgcct ggaaatgggg catccccccc ggcggcgtcc cgggggctcc 480 tgtttggcac atgcgccgct gacttcagac gaagactccc tgtcacgctg gctcatcatg 540 gactggagaa gatgcacgcg ggatgccacg atcgccgcag aagatggagg gcatcgaaag 600 tga 603 // ID NC006583_80; SV 1; special; RNA; MAM; 1626 BP. XX AC NC006583_80; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_80; NC006583_80. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..1626 FT /organism="Canis familiaris" FT CDS 1..1626 FT /protein_id="NC006583_80" FT /db_xref="trGEN:NC006583_80" FT /translation="MGVAGKKPLLFLPLGILLASPHGLSRSFSGKEENLPPTG FT GDSDHKSHRGRDAEAAGGGQPCGVLPVEPRVPSAGVQGQGHGCGESRVCARSG FT EPPALRGAGPSTQSPSTAATASPEADQGTGCWQGVPGLDAEAAGRPAATGSAR FT GAEGASTRRQPLGLSLHPHTILHDAPQSPRLTGSIPQVHQDAPLFSETAGHGS FT RADAVPAKLFTHNRIPPSLTPKNNEPASQMRERKLREARATAHLHSHTTSITS FT SSSPNEALCPSAAPTAAKALGHIEKYSCPYLPAKPTARALTTNVTSGVAPGAL FT TAAVKSGVPLTMGSAYSRNVKCDPGALTGPQLSSFGFRLDLQGSPMEECQGQK FT VGRGPPNTLTELCAAQPTPCCTCLLFKCAPAPTLPSAGGSFPNSSSAFSCVLC FT RLTGHQAQGLLTGVATPCAVLRHGLSEATARSSTSQVGASSAKATLTISPSQA FT SGTPGQLPLLLPTCLPPPTASRSQPLWWKLRERTVWGPPIPLNECFPAGGPRL FT VVVWPIVFIPRWTTNSWRGLEIDSQ" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '-' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..67 FT /number=1 FT /note="FIRST EXON; p-value: 0.281." FT exon 68..434 FT /number=2 FT /note="INTERNAL EXON; p-value: 0.243." FT exon 435..516 FT /number=3 FT /note="INTERNAL EXON; p-value: 0.414." FT exon 517..601 FT /number=4 FT /note="INTERNAL EXON; p-value: 0.595." FT exon 602..718 FT /number=5 FT /note="INTERNAL EXON; p-value: 0.557." FT exon 719..866 FT /number=6 FT /note="INTERNAL EXON; p-value: 0.354." FT exon 867..1078 FT /number=7 FT /note="INTERNAL EXON; p-value: 0.363." FT exon 1079..1626 FT /number=8 FT /note="LAST EXON; p-value: 0.445." FT CONTIG join(NC_006583:4825587...4825521, 4821802...4821436, FT 4817792...4817711, 4817659...4817575, 4817493...4817377, FT 4815883...4815736, 4812041...4811830, 4811695...4811148) XX SQ Sequence 1626 BP; 313 A; 578 C; 458 G; 277 T; other; atgggggtgg caggcaagaa gccactcctc ttcctgcctt tgggcatcct gctggcatct 60 cctcatggtt tgagtagatc cttctctggg aaagaagaaa acctaccacc aacgggaggt 120 gacagtgatc acaagagcca cagaggccgg gacgcggagg cagccggcgg gggccagccc 180 tgtggagtcc tgcccgtgga gccgcgggtc cccagcgccg gcgtccaggg tcagggccat 240 ggctgtggtg agagccgggt ctgcgctcgg agcggggagc cccctgccct gcggggagcc 300 ggccccagca cccagtcgcc aagcaccgcg gccacggcct cccccgaggc agatcagggc 360 accgggtgct ggcagggagt tcctgggtta gacgccgaag ccgcgggacg gccagcagct 420 acaggaagcg ccaggggtgc agagggcgct tccacgcggc gccagccact aggcctcagt 480 ctacatcccc acacgatcct tcatgatgct ccacagagcc cccgcctcac gggctccatc 540 ccccaagtcc accaggatgc cccgctcttc tcagagactg caggacacgg gtccagagca 600 gatgcagtac ctgccaagct gttcacacat aaccgtattc caccctcact aacacccaaa 660 aataatgaac ctgcttccca gatgcgggaa cgcaagctca gagaggctcg ggcgactgct 720 catttacaca gccatacaac cagcatcaca tcctcatcat ctcccaatga ggccttgtgc 780 ccgtcggcag ccccaaccgc agccaaggca ctcggccaca tcgaaaaata cagttgtcct 840 tacctccctg caaagcccac agcaagggct ctgactacaa atgtgacgtc aggtgtggcc 900 cccggggctc tgactgcagc tgtgaagtct ggtgtgcccc tcaccatggg ctctgcctac 960 agccgtaatg tcaagtgtga ccccggggcc ctaactgggc cccagctctc cagcttcggc 1020 tttcggctgg atctgcaagg aagccccatg gaggaatgcc agggacagaa agtgggcaga 1080 ggccctccca ataccctcac tgagctgtgc gcagcccaac ccactccttg ttgtacctgc 1140 ctcctgttca aatgcgcccc tgcaccaacc ctgccctccg ccggcggctc cttccccaac 1200 tcctcctctg cgttcagctg cgtgttgtgc agactcacgg ggcatcaggc ccagggcctc 1260 ctcacggggg ttgctacccc ctgcgcagtg ctgagacatg gcctgtcgga ggccactgcc 1320 cggtcctcca cgagtcaggt cggggcctca tcagccaagg ccacactcac catcagcccc 1380 agtcaggcct cggggacccc tgggcagctg cccctcctcc tcccgacatg cctgccacct 1440 ccaacagcct ccagatctca gcctttgtgg tggaagctgc gagagcgaac cgtgtggggt 1500 ccccccattc ccctcaacga gtgcttcccg gccggcggcc cgaggctggt ggtcgtctgg 1560 cccatcgtct tcatcccccg ctggactaca aactcctgga gggggttaga aattgactca 1620 cagtag 1626 // ID NC006583_81; SV 1; special; RNA; MAM; 2517 BP. XX AC NC006583_81; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_81; NC006583_81. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..2517 FT /organism="Canis familiaris" FT CDS 1..2517 FT /protein_id="NC006583_81" FT /db_xref="trGEN:NC006583_81" FT /translation="MWLSLALPWRREVGLRPVAPGMVSIYPSVNVCGINFSTS FT PLSPLYEIPQENYVPGMDVQHGKHERRDWMNAVAALSSTFHPSQVAEVTGSSS FT AVAWNHCPTGGPLMLGSEDKSKYIQWSMANGSSLAKDVHGCQGLLPAQTVISS FT ALDSDPGTRIRDTDERRLWAIRAPPGSDLFGVTNVGLREAEDLFAAGKRHLKA FT RKVRVPWRLGFPAIPTWLQSDSVGGPENTNSSMAALEHSQVFWKEGFMLSEPE FT AVFSSVLSRRDDEPRDVGVVGHPRTQVHPLHLTGPRKDTLCLAPDEAGLTPDH FT LQPCRLALACSLDGATMDDAWAAENVHKPQSHFVDPVTGSTRARRGALRGRSP FT CDGSGHRSFSVAERGHSGPQTLVKRPPDAPKEETMVGPDAFRGTYPLDPFEVP FT RAPRCLHVAPPSLQRAAPSVTTLPLVRRPAVDPCPESQSSQVPLGPMRTLTLL FT ASGKRLPGQPGMSIESNPRTVAATTDPASQSSVVLLMGLWSVKGVTCERPPDS FT SFRAWGGFREFGQNKVPTSNVAAETHARQPSAYVTGHCGSFYSLTIEDIAAIN FT IEEQEPGCPLKDKRIKKMWSIYTMDYSSAIRNDKYPPFASMWMDLEGIMLSEG FT GCSFHERVQLLVTVHVTLVRCQPNYMEKSPGDPTKSKIAERSWVRTTLLLPWV FT AGHLGCLQDPRTSACRAELTSSVSRCLRGSCRSQAQSQPCSPALSTCTAATLI FT HRSPDTTRTRSGEKSICEKEQIECLELNSVISEMKKSLQDCGGVDITEAVFDP FT DSRLAYFCDGIGVYINGCNVFILKGVDIRRTTQNHGWKIHSKRKRHQWVFVYK FT TQFY" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '+' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..60 FT /number=1 FT /note="FIRST EXON; p-value: 0.455." FT exon 61..272 FT /number=2 FT /note="INTERNAL EXON; p-value: 0.220." FT exon 273..392 FT /number=3 FT /note="INTERNAL EXON; p-value: 0.247." FT exon 393..460 FT /number=4 FT /note="INTERNAL EXON; p-value: 0.178." FT exon 461..571 FT /number=5 FT /note="INTERNAL EXON; p-value: 0.653." FT exon 572..777 FT /number=6 FT /note="INTERNAL EXON; p-value: 0.231." FT exon 778..1037 FT /number=7 FT /note="INTERNAL EXON; p-value: 0.015." FT exon 1038..1176 FT /number=8 FT /note="INTERNAL EXON; p-value: 0.695." FT exon 1177..1228 FT /number=9 FT /note="INTERNAL EXON; p-value: 0.683." FT exon 1229..1421 FT /number=10 FT /note="INTERNAL EXON; p-value: 0.762." FT exon 1422..1654 FT /number=11 FT /note="INTERNAL EXON; p-value: 0.781." FT exon 1655..1719 FT /number=12 FT /note="INTERNAL EXON; p-value: 0.156." FT exon 1720..1863 FT /number=13 FT /note="INTERNAL EXON; p-value: 0.214." FT exon 1864..2029 FT /number=14 FT /note="INTERNAL EXON; p-value: 0.682." FT exon 2030..2099 FT /number=15 FT /note="INTERNAL EXON; p-value: 0.510." FT exon 2100..2189 FT /number=16 FT /note="INTERNAL EXON; p-value: 0.310." FT exon 2190..2329 FT /number=17 FT /note="INTERNAL EXON; p-value: 0.347." FT exon 2330..2497 FT /number=18 FT /note="INTERNAL EXON; p-value: 0.423." FT exon 2498..2517 FT /number=19 FT /note="LAST EXON; p-value: 0.099." FT CONTIG join(NC_006583:4837795...4837854, 4838359...4838570, FT 4840637...4840756, 4840789...4840856, 4841243...4841353, FT 4845008...4845213, 4859532...4859791, 4860686...4860824, FT 4862992...4863043, 4863440...4863632, 4864851...4865083, FT 4868352...4868416, 4870722...4870865, 4872422...4872587, FT 4873621...4873690, 4874040...4874129, 4881369...4881508, FT 4884961...4885128, 4889096...4889115) XX SQ Sequence 2517 BP; 561 A; 653 C; 751 G; 552 T; other; atgtggctca gcctggccct gccatggcgc cgggaggtgg ggctgaggcc tgtggcaccg 60 ggaatggtgt caatttatcc ttctgtgaat gtctgtggga tcaacttttc cacttctcct 120 ttatcaccct tgtatgaaat tccacaagaa aattatgtgc cgggcatgga tgtgcagcac 180 gggaaacacg agaggaggga ctggatgaat gctgtggctg cgctcagcag caccttccat 240 ccaagtcagg ttgcagaggt cacgggcagc agctcagccg ttgcatggaa ccattgccct 300 accgggggac ccctgatgct gggcagcgag gacaagtcca aatacattca gtggtcgatg 360 gccaatggca gcagcctggc caaagacgtc catggctgcc agggcttgct tcctgctcag 420 acggtcatat ccagtgcact ggattcagac ccggggacac gaattcgtga tacagacgag 480 agaagactgt gggcgattag agcgcctcct ggtagtgatt tatttggggt taccaacgtt 540 ggtttacgtg aagctgagga tcttttcgca gctgggaaac ggcacttgaa agctcggaag 600 gtgcgcgtgc cgtggagact gggctttcct gccattccta cttggcttca gtcagattcg 660 gtgggaggtc cggaaaacac caactcctcc atggcggctc tggaacattc tcaggtgttt 720 tggaaggaag ggttcatgct gtccgaaccc gaagctgtat tttcttccgt tctttcgagg 780 agggatgacg agcctcgtga tgtcggtgta gttggccacc cacgcacaca agtccatccc 840 ctccacctca ccggtccccg gaaagatact ctgtgccttg cacctgatga ggcagggctc 900 accccagacc acctgcagcc ctgcaggctg gcgctggcct gctccctgga tggagcaaca 960 atggatgatg catgggctgc agagaatgtg cataagcctc agagtcactt tgtggaccct 1020 gtgacaggca gtacacgggc ccggcgcgga gctctgcggg gccgcagccc gtgtgacggg 1080 tcgggccatc gctcgttttc agtggccgag cgggggcact cgggacctca aaccctcgtc 1140 aagcgaccgc ccgacgcccc taaggaggag acgatggttg gaccagatgc ctttagaggt 1200 acctaccccc tcgatccctt cgaggtcccc cgagctcccc gctgcctgca cgtggctcca 1260 ccgagtcttc agcgagccgc accttcagtg acgactttgc cactggtgcg aagacccgcg 1320 gtggatcctt gtcctgagtc gcagagttcc caggtgcctc tcggcccgat gagaacgctc 1380 accctgctgg cttcggggaa gcgcctccca gggcagccgg ggatgagcat tgagagcaat 1440 cctaggaccg tcgcggccac cacagacccg gccagccaga gcagcgtggt gcttctgatg 1500 gggctgtggt cggtcaaggg tgtcacctgt gagcgtcccc ctgactcatc cttccgtgct 1560 tggggtgggt ttagggagtt tgggcagaac aaggtgccga cctccaatgt ggcagcagag 1620 acacatgcga ggcagccaag tgcctatgtg acagggcatt gtggctcctt ctacagtttg 1680 actattgagg acattgctgc tataaacatt gaggagcagg agcctgggtg tccattaaaa 1740 gataaacgga taaagaagat gtggtctata tatacaatgg attattcctc agccattaga 1800 aatgacaaat acccaccatt tgcttcaatg tggatggacc tggagggtat tatgctgagt 1860 gaaggtggat gttcctttca tgaacgggta cagcttttgg tgacagttca tgtcactctg 1920 gtgagatgcc agcccaacta catggagaag agcccaggag acccaacaaa gagcaagatc 1980 gctgagcgaa gctgggtgag gacgacactg ctgctgccat gggtggctgg tcacctgggc 2040 tgtctgcagg accccaggac ctctgcctgc cgtgctgagc tgacgtccag tgtcagcagg 2100 tgtctcaggg ggtcctgccg atcccaggcc cagagccagc cgtgtagccc agccctgtcc 2160 acgtgcacgg ctgccaccct catccacagg tctccagata caacacggac aagatctgga 2220 gagaaaagta tatgtgagaa ggaacaaata gaatgtttgg agctgaacag tgtaatatct 2280 gaaatgaaaa agtcattgca ggattgtgga ggagtcgaca ttaccgaggc tgtgtttgac 2340 ccagacagta gactggcata tttttgtgat gggattgggg tctatattaa tggttgtaat 2400 gtctttatac tgaagggagt tgacattagg aggacaacac aaaatcatgg atggaagatc 2460 cattccaagc gcaagaggca ccagtgggtc tttgtgtata agacacagtt ctattag 2517 // ID NC006583_82; SV 1; special; RNA; MAM; 237 BP. XX AC NC006583_82; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_82; NC006583_82. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..237 FT /organism="Canis familiaris" FT CDS 1..237 FT /protein_id="NC006583_82" FT /db_xref="trGEN:NC006583_82" FT /translation="MAYRLVHFLDCSLGCLQPGPAPWNQDFWGFLRKEPTRSS FT RARSPGGEIPSGAWVEEDLTQHWAAWLQKGHMTGPMDAD" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '-' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..119 FT /number=1 FT /note="FIRST EXON; p-value: 0.993." FT exon 120..237 FT /number=2 FT /note="LAST EXON; p-value: 0.992." FT CONTIG join(NC_006583:4900518...4900400, FT 4897845...4897728) XX SQ Sequence 237 BP; 41 A; 74 C; 76 G; 46 T; other; atggcgtacc gtctcgtgca cttcctggac tgctccctgg gctgcttgca acctggccct 60 gctccttgga atcaagattt ctggggcttt ctgcgcaagg agccgaccag atcctccagg 120 gccaggagcc ccggagggga gatcccgtca ggtgcctggg tggaggagga cctcactcaa 180 cactgggctg cctggctgca gaagggccac atgaccggcc ccatggatgc tgactga 237 // ID NC006583_83; SV 1; special; RNA; MAM; 507 BP. XX AC NC006583_83; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_83; NC006583_83. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..507 FT /organism="Canis familiaris" FT CDS 1..507 FT /protein_id="NC006583_83" FT /db_xref="trGEN:NC006583_83" FT /translation="MSELKLGDAAAGPGLSPGPQPGSQFHFGLWCRLLSDVGR FT YLPHRKESKTDLKGFPRKSNESTNNTSWSWDKLQVLPCGMEGNDNYFLKNPSW FT VFSKSLRDLAGSEPTVTEDAPPCQRQFGDRLPCHQRAGMCPHHSPFDWVVSSP FT GCDNKASTRMCMDMRFISGMNEN" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '+' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..117 FT /number=1 FT /note="FIRST EXON; p-value: 0.391." FT exon 118..234 FT /number=2 FT /note="INTERNAL EXON; p-value: 0.761." FT exon 235..289 FT /number=3 FT /note="INTERNAL EXON; p-value: 0.726." FT exon 290..388 FT /number=4 FT /note="INTERNAL EXON; p-value: 0.496." FT exon 389..507 FT /number=5 FT /note="LAST EXON; p-value: 0.727." FT CONTIG join(NC_006583:4912017...4912133, 4914684...4914800, FT 4915174...4915228, 4915848...4915946, 4916648...4916766) XX SQ Sequence 507 BP; 119 A; 137 C; 135 G; 116 T; other; atgtctgagc tgaagctcgg tgatgctgct gccgggccag gcctgtcccc ggggccccag 60 ccagggtctc agttccactt tggactgtgg tgtcgtcttc tctcagatgt cgggaggtat 120 ttgccgcatc ggaaggagag caaaactgac ttgaaaggtt ttccacgaaa atccaatgaa 180 agcacaaaca acaccagttg gagttgggac aagctgcaag ttctcccctg tgggatggaa 240 ggcaacgaca actacttcct gaaaaaccct tcctgggtct tttcaaaatc gctcagggac 300 ctggctgggt ccgaacccac agtcacagag gatgctcccc cgtgccagcg acaattcggg 360 gacaggcttc cttgtcacca gagagcagga atgtgccccc atcattcgcc ttttgactgg 420 gttgtctcca gtcctggctg tgacaacaaa gcttctacac gcatgtgcat ggacatgcgc 480 ttcatctctg ggatgaatga aaattaa 507 // ID NC006583_84; SV 1; special; RNA; MAM; 1590 BP. XX AC NC006583_84; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_84; NC006583_84. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..1590 FT /organism="Canis familiaris" FT CDS 1..1590 FT /protein_id="NC006583_84" FT /db_xref="trGEN:NC006583_84" FT /translation="MSAGGATHLEGARGQDEAQALLSQRCGLWLKAQQAVPGR FT RGPQPPAGTRRQHTGSVSRNLENPAFQRLCACDLSVQTRPLPPTARKGSCTCL FT LHVQSGRDHEEYSHDAECTVTCSRSIHVEANGGYLSFLMAEEYSIVYINHIFS FT IHSSFDGHRGSFHSLAIVDIAARNIGVQVSRRFIASVSLGAPSRLHPDPGCPY FT RREALTCTPGRMDTGPGHGHPRGSGTVHRIVHARDLAFSRRQRKTLGRTNTRF FT RHSGARRVCTDKRAQARSQITNNWVWTYVQVTGMALASAKQVDAFQEMIKSII FT FRRSPGSYLYKTSSSYIVYASSPDVSGPGCQAFIRCQFMNKIKTRGERQSPKL FT CSKGWSKVSNAICVALKGNVYQHDHNSFCRSEKVPERGPSNGQALVGQDAQPG FT IGASRKNQAGLRSQNTRIHSVGDATHCLRSPSQPPGNITCDYLTRAQGMTTLC FT NLLTFQKAMSPVHVFDAVHTGASVSAAGEIRPTALHAQRSQQVLGSGRTLFLQ FT KLTVKPEEQNYKY" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '+' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..347 FT /number=1 FT /note="FIRST EXON; p-value: 0.610." FT exon 348..554 FT /number=2 FT /note="INTERNAL EXON; p-value: 0.001." FT exon 555..637 FT /number=3 FT /note="INTERNAL EXON; p-value: 0.011." FT exon 638..722 FT /number=4 FT /note="INTERNAL EXON; p-value: 0.011." FT exon 723..810 FT /number=5 FT /note="INTERNAL EXON; p-value: 0.025." FT exon 811..920 FT /number=6 FT /note="INTERNAL EXON; p-value: 0.029." FT exon 921..1029 FT /number=7 FT /note="INTERNAL EXON; p-value: 0.292." FT exon 1030..1183 FT /number=8 FT /note="INTERNAL EXON; p-value: 0.350." FT exon 1184..1372 FT /number=9 FT /note="INTERNAL EXON; p-value: 0.714." FT exon 1373..1590 FT /number=10 FT /note="LAST EXON; p-value: 0.402." FT CONTIG join(NC_006583:4922854...4923200, 4936116...4936322, FT 4938487...4938569, 4939934...4940018, 4943628...4943715, FT 4944350...4944459, 4945522...4945630, 4946526...4946679, FT 4953241...4953429, 4953699...4953916) XX SQ Sequence 1590 BP; 384 A; 468 C; 423 G; 315 T; other; atgtctgcgg gaggtgccac ccacttggaa ggtgcgagag gccaggacga ggcgcaagcc 60 ctgctgtcac agcgctgtgg cctgtggctc aaggcccagc aggctgtccc tgggcgtcga 120 ggaccgcagc cacccgcagg aacccgacgg cagcacacgg gctccgtcag ccggaacctg 180 gagaaccccg cgttccagcg gctctgcgcg tgtgatctct ctgtgcaaac aagaccgctc 240 cctccaaccg cacggaaggg cagctgcacg tgcctgctgc atgtgcaaag tggaagggac 300 catgaggaat actcccacga cgccgagtgc acagtcacct gtagcaggtc catccacgtg 360 gaagcaaatg gtgggtattt gtcgtttcta atggctgagg aatattccat tgtatacata 420 aaccacatct tctctatcca ttcatctttc gatggacacc gaggctcctt ccacagtttg 480 gctatcgtgg acattgctgc tagaaacatc ggggtgcagg tgtcccggcg tttcattgcc 540 tctgtatctt tgggtgctcc cagccgcctg caccccgacc ccggatgccc ttatcgcaga 600 gaggcactga cgtgcacacc agggcgaatg gataccggcc caggccatgg tcacccccgg 660 ggctccggga ccgtccaccg catcgtgcac gcaagggact tggccttctc tcgccgacaa 720 aggaagacgc tgggccgcac gaacacacgc ttcagacact ctggtgctcg aagagtctgc 780 acagataaac gtgcacaggc acgcagtcag attacaaata actgggtgtg gacctatgtc 840 caggtcacag gcatggccct agcctctgcc aaacaggtgg atgcttttca ggaaatgata 900 aagtctatta tcttcagaag atctccaggc tcctacctgt acaagaccag ttcatcctac 960 attgtctacg catcaagccc tgatgtcagt ggccctggat gtcaggcctt catcagatgt 1020 cagtttatga acaaaataaa gacacgggga gagcggcaga gccccaagct ctgttcaaaa 1080 ggatggagta aagtcagcaa tgcaatttgt gtggctctga agggaaatgt gtaccaacat 1140 gatcacaaca gcttctgcag atcagagaag gtgcctgaac gaggaccaag caatggacag 1200 gcacttgtgg gacaggacgc ccagcctggc attggggcca gccgcaagaa ccaagcggga 1260 ctacgctcac agaacacacg catccactct gtgggcgatg ccacccactg tctgcgttcg 1320 cccagccaac cacctggaaa tatcacctgt gattatctaa cacgtgccca agggatgacc 1380 actctctgca acctgctgac ctttcagaaa gcgatgtctc ctgtgcatgt atttgatgcc 1440 gtgcacacgg gtgcctctgt ttctgcagca ggagaaatac ggcccacagc cctgcacgcc 1500 cagcgctccc agcaagttct aggatcagga cgcactctct tcctgcagaa gcttacagtc 1560 aaacctgagg agcaaaacta taaatattag 1590 // ID NC006583_85; SV 1; special; RNA; MAM; 1050 BP. XX AC NC006583_85; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_85; NC006583_85. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..1050 FT /organism="Canis familiaris" FT CDS 1..1050 FT /protein_id="NC006583_85" FT /db_xref="trGEN:NC006583_85" FT /translation="MGLPGRLTTVVWPRHLDLLTPSCRYRHPGAAPGQHPVSS FT SIKWEQGQRVVLAGQCGDSLGHGPPGRCSLQNEAGNVLFGESLLSKGFLESPW FT VTVEVCRIGLKLYFNSTRENDRMQNSLHKKLKYVKQKSSSRTQIVVATGYLFL FT MEAPRLLTRAEPLRFGTVSHLGPADAEQGGMMKAARDVSHHPCTAPGASRGFA FT ASMVEQKQVSRSLSEMLALLQQHSELGNEKTSSRWKESTHQPWEGQRCLISAC FT GAPVRALARAVGGTQQVQGRVCGSCRTGAAGSGNWLDIIQIVSEVTVPIDILT FT SGAKGLSRIHPHQQVVLSDFLTFANLVEQDGCKGLDLAFPIPLAS" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '-' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..109 FT /number=1 FT /note="FIRST EXON; p-value: 0.133." FT exon 110..240 FT /number=2 FT /note="INTERNAL EXON; p-value: 0.056." FT exon 241..296 FT /number=3 FT /note="INTERNAL EXON; p-value: 0.534." FT exon 297..422 FT /number=4 FT /note="INTERNAL EXON; p-value: 0.885." FT exon 423..486 FT /number=5 FT /note="INTERNAL EXON; p-value: 0.067." FT exon 487..727 FT /number=6 FT /note="INTERNAL EXON; p-value: 0.247." FT exon 728..990 FT /number=7 FT /note="INTERNAL EXON; p-value: 0.469." FT exon 991..1050 FT /number=8 FT /note="LAST EXON; p-value: 0.019." FT CONTIG join(NC_006583:4994469...4994361, 4988434...4988304, FT 4987449...4987394, 4986245...4986120, 4979751...4979688, FT 4975093...4974853, 4973477...4973215, 4960630...4960571) XX SQ Sequence 1050 BP; 228 A; 282 C; 320 G; 220 T; other; atggggttgc ctgggcggct gacgacagtg gtgtggccac ggcacctgga cctcctgacc 60 ccctcctgca ggtaccgcca tcctggtgct gcgccgggcc agcacccagt gagctcatcc 120 ataaaatggg agcaaggcca gcgcgtcgtc ctggcagggc agtgcggaga ctcattgggg 180 cacggccccc cggggaggtg ctcgctccag aatgaagcag ggaatgtctt gttcggtgag 240 agcttgctga gcaagggctt cctagaaagt ccttgggtga ctgtggaggt gtgtcggata 300 ggcctcaagc tctacttcaa ctcaactcga gaaaatgata ggatgcagaa ttccctacat 360 aaaaagctaa agtacgtaaa acagaaatca tcctcccgaa cacaaatcgt tgtggctact 420 gggtacctgt tcctgatgga ggcaccccgc ctgctgaccc gtgcggagcc tctgcggttt 480 ggaactgtgt cacacctcgg ccctgcagac gctgagcagg gagggatgat gaaagccgcc 540 cgtgatgttt cacatcatcc gtgcactgca ccaggagcca gccgtggctt tgcagcgtcc 600 atggtggagc agaagcaggt ttccagaagc ttatctgaga tgctcgcgtt gctacagcag 660 cacagcgagc tggggaatga aaagacatca tctcggtgga aggagagcac gcaccagccc 720 tgggagggcc agcgctgctt gatcagtgcc tgcggtgctc ctgtgcgtgc tctggctcgt 780 gccgtcgggg ggacccaaca ggtgcaggga cgtgtctgcg gtagctgcag aactggagct 840 gcaggatccg ggaattggct agacattatc caaattgttt ccgaagtgac tgtgccaatt 900 gacattctta ccagcggagc caaagggctc tcaaggatcc atcctcacca acaagtagta 960 ttgtcagact ttttaacttt tgccaatctg gtggagcagg atggctgcaa gggtctggac 1020 ttggcctttc ccatcccact ggccagttag 1050 // ID NC006583_86; SV 1; special; RNA; MAM; 513 BP. XX AC NC006583_86; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_86; NC006583_86. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..513 FT /organism="Canis familiaris" FT CDS 1..513 FT /protein_id="NC006583_86" FT /db_xref="trGEN:NC006583_86" FT /translation="MWTKETLLHCWWECELVQPLWKTVWRFLKELKIDLPYDP FT AIALLEIYPKDTDAMKHRDTCTLMFLAAMSTIAKLWKEPRCPSKDEWIKKMWS FT MYTMEYYSAIRNDKYPPFASTWMELEGIMLSEEMGSPPMSTALLTCICVQRRE FT AESNQSISSYDMSSGATERLNMHVM" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '-' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..372 FT /number=1 FT /note="FIRST EXON; p-value: 0.535." FT exon 373..513 FT /number=2 FT /note="LAST EXON; p-value: 0.162." FT CONTIG join(NC_006583:5008904...5008533, FT 4997724...4997584) XX SQ Sequence 513 BP; 164 A; 113 C; 126 G; 110 T; other; atgtggacaa aggaaaccct cttacactgt tggtgggaat gtgaactggt gcagccactc 60 tggaaaactg tgtggaggtt cctcaaagag ttaaaaatag acctgcccta cgacccagca 120 attgcactgt tggagattta ccccaaagat acagatgcaa tgaaacaccg ggacacctgc 180 accctgatgt ttctagcagc aatgtccaca atagccaaac tgtggaagga gcctcggtgt 240 ccatcgaaag atgaatggat aaagaagatg tggtctatgt atacaatgga atattactca 300 gccatcagaa atgacaaata cccaccattt gcttcgacgt ggatggaact ggagggtatt 360 atgctgagtg aagaaatggg atccccacca atgagcacag ccctgctcac gtgcatatgc 420 gtacaaagaa gagaggcaga aagtaatcag agcatctcta gttacgacat gagctcagga 480 gccactgaac gtctgaacat gcacgtcatg tag 513 // ID NC006583_87; SV 1; special; RNA; MAM; 372 BP. XX AC NC006583_87; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_87; NC006583_87. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..372 FT /organism="Canis familiaris" FT CDS 1..372 FT /protein_id="NC006583_87" FT /db_xref="trGEN:NC006583_87" FT /translation="MWTKETLLHCWWECELVQPLWKTVWRFLKELKIDLPYDP FT AIALLEIYPKDTDAMKHRDTCTLMFLAAMSTIAKLWKEPRCPSKDEWIKKMWS FT MYTMEYYSAIRNDKYPPFASTWMELEGIMLSE" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '-' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..372 FT /number=1 FT /note="FIRST EXON; p-value: 0.450." FT CONTIG join(NC_006583:5008904...5008533 FT join(NC_006583:5008904...5008533) XX SQ Sequence 372 BP; 118 A; 78 C; 91 G; 85 T; other; atgtggacaa aggaaaccct cttacactgt tggtgggaat gtgaactggt gcagccactc 60 tggaaaactg tgtggaggtt cctcaaagag ttaaaaatag acctgcccta cgacccagca 120 attgcactgt tggagattta ccccaaagat acagatgcaa tgaaacaccg ggacacctgc 180 accctgatgt ttctagcagc aatgtccaca atagccaaac tgtggaagga gcctcggtgt 240 ccatcgaaag atgaatggat aaagaagatg tggtctatgt atacaatgga atattactca 300 gccatcagaa atgacaaata cccaccattt gcttcgacgt ggatggaact ggagggtatt 360 atgctgagtg aa 372 // ID NC006583_88; SV 1; special; RNA; MAM; 915 BP. XX AC NC006583_88; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_88; NC006583_88. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..915 FT /organism="Canis familiaris" FT CDS 1..915 FT /protein_id="NC006583_88" FT /db_xref="trGEN:NC006583_88" FT /translation="MDGEASPELLYCQASPTRALIMVQAHSARFLLNWSLLLQ FT LLKHQEHQAAVHKHERAPWGFPAVLNVLGAFSISWRTFPFFVSGFCRRHMPDL FT AVFPRVHCLHLVIVWPVWTEQVRQVERVLMRWKDSTWYSVHCGGKLSLQNGGC FT VLSWVSIGKPCGLSSASSPAQPRCLGGTLLVCIRGAWHFELPVALLLLKPPVL FT PPLPESAAVSKCHYFTRMPATGSGLLLICTDLASKRSHLQDQETHACKGGEDE FT ANSHDTAGSRLFSVGTAARQAKKGRIIEACVVVVIGFMVTVTGHNLGPMIKDG" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '-' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..12 FT /number=1 FT /note="FIRST EXON; p-value: 0.156." FT exon 13..84 FT /number=2 FT /note="INTERNAL EXON; p-value: 0.323." FT exon 85..261 FT /number=3 FT /note="INTERNAL EXON; p-value: 0.503." FT exon 262..380 FT /number=4 FT /note="INTERNAL EXON; p-value: 0.365." FT exon 381..503 FT /number=5 FT /note="INTERNAL EXON; p-value: 0.461." FT exon 504..720 FT /number=6 FT /note="INTERNAL EXON; p-value: 0.203." FT exon 721..813 FT /number=7 FT /note="INTERNAL EXON; p-value: 0.401." FT exon 814..915 FT /number=8 FT /note="LAST EXON; p-value: 0.549." FT CONTIG join(NC_006583:5047103...5047092, 5046822...5046751, FT 5038094...5037918, 5036267...5036149, 5035780...5035658, FT 5032067...5031851, 5024548...5024456, 5013653...5013552) XX SQ Sequence 915 BP; 179 A; 256 C; 268 G; 212 T; other; atggatgggg aggcatctcc agagctcctg tactgccagg cttcccccac aagggccttg 60 ataatggtgc aagcacacag cgcgcgcttc cttctgaact ggtcactgct cctgcagctg 120 ctgaagcacc aggagcatca ggcagctgtg cacaagcatg aaagggcccc ttggggattc 180 ccagctgtac tcaatgtcct tggggccttc agcatttctt ggaggacgtt ccccttcttc 240 gtgagtggat tttgtcgaag gcacatgcct gaccttgctg tgtttcctcg tgtgcactgt 300 cttcacctgg ttatagtgtg gcctgtctgg acagagcagg tgcggcaggt agagagggtg 360 cttatgcgct ggaaggacag cacctggtac agtgtgcact gtggtggcaa gctctcgctc 420 cagaatggcg gctgtgttct gagctgggtg agcatcggca aaccctgtgg tctcagctcc 480 gcatcctcac ctgcacagcc caggtgcctg ggaggcaccc tcctggtctg tatccggggt 540 gcctggcact ttgagctccc agtggctttg ctgctcctga agccacctgt cctcccccct 600 ttgcctgagt ctgccgctgt gtccaaatgt cactatttta cgaggatgcc agccacggga 660 tcagggctcc tgctcatctg cacggacctc gcttccaaaa gatcacattt gcaggatcag 720 gagacacacg catgtaaagg aggagaggac gaagcaaatt cacatgacac cgccgggtcg 780 cggctgttct cagtgggcac agctgcgcgc caggccaaga aagggcgtat aatcgaggcc 840 tgtgtagttg tggtcattgg cttcatggtc acggtcactg gacacaatct ggggcccatg 900 atcaaagatg gataa 915 // ID NC006583_89; SV 1; special; RNA; MAM; 1002 BP. XX AC NC006583_89; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_89; NC006583_89. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..1002 FT /organism="Canis familiaris" FT CDS 1..1002 FT /protein_id="NC006583_89" FT /db_xref="trGEN:NC006583_89" FT /translation="MWLQRLQACSQAGLGLCVPVSRGLLHEGRAPGPFQRPGG FT CQPKSGVSVPPEATFNSQGQEQVAEAPAPTSVDGFPAGTAELSLVSVANPRRR FT SMPPASQPVWAKRVHTGFGAKAVGAGFAPLPSVTPDQPKWGPQGSCLDLRKKR FT SLQEWVFLAEPEGPSPARDKSALAWPTTFSTTRCLILSACVQASRGHHNAQCA FT KPKSVISPDLPSADSLLCLPEPLLGSFLVDLPMSAHTLCWSGFSNRMDGSMDR FT WMDREPEPMDTTVKHCLPDVRVLKSAQRDMQGPLEGSEEEAVPLCSTLSPLGT FT PEGTLCPRSRPAPLNGTWIILSIFVAPYF" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '+' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..86 FT /number=1 FT /note="FIRST EXON; p-value: 0.987." FT exon 87..269 FT /number=2 FT /note="INTERNAL EXON; p-value: 0.946." FT exon 270..463 FT /number=3 FT /note="INTERNAL EXON; p-value: 0.892." FT exon 464..760 FT /number=4 FT /note="INTERNAL EXON; p-value: 0.873." FT exon 761..1002 FT /number=5 FT /note="LAST EXON; p-value: 0.885." FT CONTIG join(NC_006583:5060394...5060479, 5061596...5061778, FT 5062174...5062367, 5062708...5063004, 5064994...5065235) XX SQ Sequence 1002 BP; 186 A; 329 C; 286 G; 201 T; other; atgtggctgc agagactgca agcatgttcg caggcaggcc tgggcctgtg tgtccctgtg 60 tctcgggggc tgctgcatga ggggagagcc cctgggcctt tccaaagacc cgggggctgc 120 cagcccaaaa gcggggtgtc tgtgcctcca gaggcgacct tcaactccca gggacaggaa 180 caggtggctg aggctccagc cccgacctca gtggatggtt ttccagccgg cacagcagaa 240 ctgagcctgg tttctgtggc aaatcctagg aggaggtcca tgccaccagc ctcccagcca 300 gtatgggcaa aacgtgtgca cactggcttt ggggccaagg ctgtgggggc tggctttgcc 360 cccctgccct ccgtcacccc cgaccagccc aagtgggggc ctcaaggcag ctgcctggat 420 ctccgaaaga agcgctcact gcaggaatgg gtctttctgg cagagccaga gggtccctca 480 ccagcaaggg acaagtcagc cctggcctgg cctacaacgt tttccactac ccgctgcctc 540 atcctgagcg cctgtgttca ggcatctcgt gggcaccata atgcacagtg tgcaaagcct 600 aagtcagtca tctccccaga cctgccctcc gcggactccc tgctctgcct tccagagccc 660 ctccttggct ctttcctcgt ggatctgccc atgtctgcac acaccctctg ttggtcaggg 720 ttctccaaca ggatggatgg ctctatggac agatggatgg acagggaacc agagcctatg 780 gacaccacgg tcaaacactg tctccctgat gtccgggttc tcaagagtgc tcagagggac 840 atgcagggcc ccctggaggg ctcagaggag gaggcagtgc ccctttgctc caccctgtca 900 cccctgggca cccctgaggg caccctctgc cctcgcagcc gccccgcccc cctcaacggc 960 acctggatta ttttatcaat atttgtggca ccatatttct ag 1002 // ID NC006583_90; SV 1; special; RNA; MAM; 711 BP. XX AC NC006583_90; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_90; NC006583_90. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..711 FT /organism="Canis familiaris" FT CDS 1..711 FT /protein_id="NC006583_90" FT /db_xref="trGEN:NC006583_90" FT /translation="MRAKRPLLALPGSVLRAPDSAWVGKNKTSGPPTAGYGNL FT QSPGDEGAPGTPHRVLPGHLHPAAVGAAVTAASPTPVPSLIPQREPFYFVFQG FT YFRVQDKHRRVCCVSSQKHTAGGGNRYLQSEEQSSRQLTFGWGTGDGIRSHDP FT ESPSVKVTPGQTMWPPCCILVLPEDSPLSCQESYMRGFSELVLAHLFKKKKKK FT KKKKKKKKKKKKKKKKKKKKERKKTSSFPLKSVITTNN" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '-' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..139 FT /number=1 FT /note="FIRST EXON; p-value: 0.574." FT exon 140..211 FT /number=2 FT /note="INTERNAL EXON; p-value: 0.526." FT exon 212..403 FT /number=3 FT /note="INTERNAL EXON; p-value: 0.717." FT exon 404..542 FT /number=4 FT /note="INTERNAL EXON; p-value: 0.845." FT exon 543..711 FT /number=5 FT /note="LAST EXON; p-value: 0.828." FT CONTIG join(NC_006583:5075690...5075552, 5074172...5074101, FT 5073914...5073723, 5073015...5072877, 5068393...5068225) XX SQ Sequence 711 BP; 191 A; 193 C; 190 G; 137 T; other; atgagggcca aacgtccatt gcttgcactg cccggctctg tacttcgtgc acctgactct 60 gcatgggtgg ggaaaaataa aaccagtgga cctcccaccg caggctatgg gaacttgcag 120 tcccctggtg acgagggtgc acctggtact cctcacagag tcctcccagg acacctgcac 180 ccggcagccg taggagcggc cgtcactgca gcctctccaa ccccagtccc ctcgctcatt 240 ccccagcgtg agcccttcta tttcgtgttc cagggttact ttcgtgttca agacaagcat 300 cgccgcgtct gctgtgtctc ttctcagaaa catacggccg gtggcgggaa tcggtatttg 360 caatccgagg aacaaagtag ccgccagctc accttcgggt ggggcactgg ggatggcata 420 aggtcccatg accccgagtc cccctctgtg aaggtgacgc cgggacagac catgtggcca 480 ccctgctgca tcttggtgct ccctgaagac tcccccttga gctgccagga gagctacatg 540 agggggtttt ccgagcttgt actagcgcat ttatttaaaa agaagaagaa gaagaagaag 600 aagaagaaga agaagaagaa gaagaagaag aagaagaaga agaagaagaa gaaagaaaga 660 aagaaaacat caagcttccc cctgaaaagt gtgattacca caaacaattg a 711 // ID NC006583_91; SV 1; special; RNA; MAM; 237 BP. XX AC NC006583_91; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_91; NC006583_91. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..237 FT /organism="Canis familiaris" FT CDS 1..237 FT /protein_id="NC006583_91" FT /db_xref="trGEN:NC006583_91" FT /translation="MIMTVAVTMTVAVAVTVAVTMTVAVAVPMAWTREKQRRM FT SCAFVASGPRGELFFLSLPGSLLAHLNTDLDVQLGQLPT" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '-' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..93 FT /number=1 FT /note="FIRST EXON; p-value: 0.172." FT exon 94..237 FT /number=2 FT /note="LAST EXON; p-value: 0.197." FT CONTIG join(NC_006583:5081267...5081175, FT 5081075...5080932) XX SQ Sequence 237 BP; 42 A; 75 C; 74 G; 46 T; other; atgatcatga ctgtggcggt gaccatgaca gtggccgtgg ccgtgaccgt ggccgtgacc 60 atgacagtgg ccgtcgccgt gcccatggcc tggacccgag aaaaacagag gagaatgtcc 120 tgcgccttcg tggccagcgg ccccagggga gagctcttct tcctttcgct tccggggtcc 180 ctgcttgctc acctcaacac tgacctagac gtgcagctag ggcagctgcc gacctga 237 // ID NC006583_92; SV 1; special; RNA; MAM; 1212 BP. XX AC NC006583_92; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_92; NC006583_92. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..1212 FT /organism="Canis familiaris" FT CDS 1..1212 FT /protein_id="NC006583_92" FT /db_xref="trGEN:NC006583_92" FT /translation="MAPALWRPGMGALEPRVHGAMCREQQSLADITKLNLRDL FT TQVLGDASTKNLPGWFDVCIEYVCSDQKWQYFFYSRAYEQRHDAKKATQCPSI FT DEWVNKMLHIRTMAYRPTVERNEIRAQATMGMDLGNVVLSERSQTRSHVVHTP FT VSADAKVHYLLRAPAAAELLPGARLAAPDASTAACARGRPCPGARSSSVLGFL FT KQKYLNLRLGWLSPGHFVERTPLLPELRQEGAIADRHGPWQPDGGRSLLLPGV FT THRQHEAVSAPQRALLSELCYPQAQLPKACADSEHTEGRPEPERSKVQKDKMK FT KGCPSSAHNGAPRDSKLSLNCLQCLTYWSRSSSFNELNNSAREGDDTQHILEA FT TKPGSAIRNVLAPVLACRVILGTAYFLWFGVTSIEMEIAVFLHMAV" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '+' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..158 FT /number=1 FT /note="FIRST EXON; p-value: 0.478." FT exon 159..252 FT /number=2 FT /note="INTERNAL EXON; p-value: 0.125." FT exon 253..431 FT /number=3 FT /note="INTERNAL EXON; p-value: 0.030." FT exon 432..572 FT /number=4 FT /note="INTERNAL EXON; p-value: 0.299." FT exon 573..771 FT /number=5 FT /note="INTERNAL EXON; p-value: 0.004." FT exon 772..837 FT /number=6 FT /note="INTERNAL EXON; p-value: 0.185." FT exon 838..1037 FT /number=7 FT /note="INTERNAL EXON; p-value: 0.483." FT exon 1038..1212 FT /number=8 FT /note="LAST EXON; p-value: 0.291." FT CONTIG join(NC_006583:5096599...5096756, 5097456...5097549, FT 5099303...5099481, 5100272...5100412, 5114320...5114518, FT 5118499...5118564, 5120555...5120754, 5128447...5128621) XX SQ Sequence 1212 BP; 292 A; 331 C; 348 G; 241 T; other; atggcacctg cactgtggag gccagggatg ggggctctgg agccacgggt acatggggcg 60 atgtgtaggg agcagcagag cctggcggac ataacaaagc ttaatctcag agacttaacc 120 caggttttag gggatgcaag caccaagaat ctacctgggt ggtttgatgt ctgcattgaa 180 tacgtctgct ccgatcaaaa atggcaatat ttcttctaca gccgtgctta cgaacagcgt 240 cacgatgcaa agaaggccac tcaatgccca tccatcgatg agtgggtaaa caagatgctg 300 catatccgga cgatggcata caggcccacc gttgagagga atgaaatacg agcacaggct 360 acaatgggga tggaccttgg aaatgtcgtg ctgagtgaaa gaagccagac aaggagccac 420 gtcgtgcaca cgcctgtgag cgcagatgcc aaggtgcact acctgctgcg agcacctgct 480 gcagctgagc tcctgcctgg ggcccggctg gcggcacctg atgcaagcac agctgcctgt 540 gccaggggca gaccctgccc tggagcccga agctcttccg tccttggctt cctaaaacag 600 aagtatttga atctaaggct gggctggctg agccctgggc acttcgtgga gagaacaccc 660 ctcctccccg agctgcgcca ggagggagcc attgcagaca gacacggccc ctggcagcca 720 gatggtggca gaagcctgct tctccctggg gtcacacatc ggcagcatga ggctgtgtca 780 gcacctcaac gagctctgct atccgagctc tgctatccgc aggcccagct ccccaaggcc 840 tgtgcagaca gcgagcacac agaggggcgg ccggagccag aacggtcaaa agtgcagaag 900 gacaaaatga agaaaggctg cccgagctcg gcacacaatg gcgctcctcg tgacagcaag 960 ctctctctga actgcctcca gtgtttaaca tattggagcc gttcatcttc cttcaatgaa 1020 cttaataact ctgccagaga aggtgacgac acacagcata ttctggaggc tacaaagcct 1080 ggatcagcga tcagaaatgt gctggctcca gtcctggcct gccgtgtgat cctgggcacc 1140 gcatactttc tctggtttgg tgtcactagc atcgagatgg aaattgctgt gtttctccat 1200 atggctgttt ga 1212 // ID NC006583_93; SV 1; special; RNA; MAM; 798 BP. XX AC NC006583_93; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_93; NC006583_93. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..798 FT /organism="Canis familiaris" FT CDS 1..798 FT /protein_id="NC006583_93" FT /db_xref="trGEN:NC006583_93" FT /translation="MGASVVLPSLQEGSSPPDRPAHPCFLAAGCELGGGGWQP FT RLRSTAEDRGRLLSRSCYLVNTELGLLIRKTEVKARTPALPCEHVMQPVPRAS FT VESADPAELSPSVSPRLILSLRWGTAAQRQPAAITTTTTNTNITNTNINTINT FT TTTNTTTNTTTTTTNTTNNSTTSTTTTTNDNTTTTTNTTTPSTTASPPMTPIP FT TTRTTPLTPTPTAPIPPTPLPIPPSLLPTPTPPIPTTTTTTTAITIITGLTDL FT FLLTQLNFRTRHHI" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '-' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..44 FT /number=1 FT /note="FIRST EXON; p-value: 0.196." FT exon 45..189 FT /number=2 FT /note="INTERNAL EXON; p-value: 0.145." FT exon 190..298 FT /number=3 FT /note="INTERNAL EXON; p-value: 0.302." FT exon 299..798 FT /number=4 FT /note="LAST EXON; p-value: 0.348." FT CONTIG join(NC_006583:5168018...5167975, 5166143...5165999, FT 5164512...5164404, 5154680...5154181) XX SQ Sequence 798 BP; 236 A; 310 C; 132 G; 120 T; other; atgggggcct ctgtcgtact gcccagcctg caggaaggtt ccagccctcc cgaccggcct 60 gcacacccgt gtttcctggc agccggctgc gagcttggcg gcgggggctg gcagcctagg 120 ctcagaagca cagcagagga ccggggtcgc ctgctttctc ggagctgcta tttggtgaat 180 acggagctgg gtctcctcat ccggaaaaca gaggtcaaag cacggacccc ggctctgcct 240 tgcgagcatg tgatgcagcc ggtgccacgg gcatcagtcg agtcagctga cccggcagag 300 ttatcccctt ctgtctcccc aagactcatc ctttccctga gatggggaac tgctgcccag 360 agacagcctg ctgccatcac taccaccacc accaacacca acatcaccaa caccaacatc 420 aacaccatca ataccactac caccaacacc accaccaata ccactaccac caccacaaac 480 acaaccaaca atagcaccac cagcaccacc accaccacca atgacaacac taccactacc 540 acaaatacca ccacccccag cacaacagca tcaccaccaa tgacaccaat accaacaaca 600 agaacaacac cattaacacc aacaccaaca gcaccaatac ctccaacacc actaccaata 660 ccaccatcac tactaccaac accaacacca ccaataccca ccaccaccac cactaccacc 720 gccatcacca tcatcaccgg gctgacagac ctattccttc ttacccaact caacttcaga 780 actagacatc atatttaa 798 // ID NC006583_94; SV 1; special; RNA; MAM; 546 BP. XX AC NC006583_94; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_94; NC006583_94. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..546 FT /organism="Canis familiaris" FT CDS 1..546 FT /protein_id="NC006583_94" FT /db_xref="trGEN:NC006583_94" FT /translation="MLGYLAIRVPVGTTVANPIPSLGGFDSTAGCRIPNPFFA FT TEDGSPLIQVHISEVVKEESPVTGAPLTCFPVHTSCQARLRVFNHTDSSPAGY FT CGNPRSSCNSPHRKPLHAPSAERCTRRIGGQSSSGALWHQCSALLSITKDLPL FT LDVSYKGNQTICGLIKKIVTAKPYSTKNFEDKDKEH" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '+' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..67 FT /number=1 FT /note="FIRST EXON; p-value: 0.140." FT exon 68..176 FT /number=2 FT /note="INTERNAL EXON; p-value: 0.208." FT exon 177..382 FT /number=3 FT /note="INTERNAL EXON; p-value: 0.200." FT exon 383..477 FT /number=4 FT /note="INTERNAL EXON; p-value: 0.321." FT exon 478..546 FT /number=5 FT /note="LAST EXON; p-value: 0.630." FT CONTIG join(NC_006583:5173475...5173541, 5175024...5175132, FT 5177957...5178162, 5178668...5178762, 5181345...5181413) XX SQ Sequence 546 BP; 144 A; 155 C; 120 G; 127 T; other; atgttgggat atctcgccat ccgggtccct gtaggaacaa cagtggcaaa tcccattcct 60 tcgctgggag gttttgattc cacggcaggc tgtaggatcc caaatccatt ctttgcaaca 120 gaagatggca gtcccttaat acaggtgcac atttcagagg tggttaaaga agaaagccct 180 gtcactggag cccctctcac ctgcttccct gtccacacct cctgccaagc caggcttcgg 240 gtgttcaatc acacagactc ttccccagct ggctactgcg gcaatcctcg aagctcgtgt 300 aattccccac atcgcaaacc actgcatgca ccttctgccg agagatgcac acgtagaatc 360 gggggtcaaa gcagctcagg agctctctgg caccaatgct ctgctctgct ttccatcacc 420 aaggatttgc ctcttctgga cgtttcatat aaagggaacc aaacaatatg tggccttata 480 aagaagattg ttactgcaaa accctatagc accaagaact tcgaggataa ggacaaagaa 540 cactga 546 // ID NC006583_95; SV 1; special; RNA; MAM; 273 BP. XX AC NC006583_95; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_95; NC006583_95. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..273 FT /organism="Canis familiaris" FT CDS 1..273 FT /protein_id="NC006583_95" FT /db_xref="trGEN:NC006583_95" FT /translation="MLPLMNPFIITTSTIITTTVISTTTTTTITTTTINITTM FT IINTNTITTTTTTITITIITITTNTIITDNTTITPPLPPTTTIITITLPPP" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '+' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..273 FT /number=1 FT /note="SINGLE EXON; p-value: 0.518." FT CONTIG join(NC_006583:5183003...5183275 FT join(NC_006583:5183003...5183275) XX SQ Sequence 273 BP; 95 A; 119 C; 8 G; 51 T; other; atgctgcctc ttatgaatcc attcataatt accacttcca ccataattac caccactgtt 60 attagcacca ccaccaccac aaccatcacc accaccacca tcaacatcac aaccatgatc 120 atcaacacca acaccatcac caccaccacc accaccatta ccatcaccat catcaccatt 180 accaccaaca ctatcatcac cgacaacaca accatcactc ctcctctacc accaaccacc 240 accatcatta caatcacact accacctcca tga 273 // ID NC006583_96; SV 1; special; RNA; MAM; 363 BP. XX AC NC006583_96; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_96; NC006583_96. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..363 FT /organism="Canis familiaris" FT CDS 1..363 FT /protein_id="NC006583_96" FT /db_xref="trGEN:NC006583_96" FT /translation="MLSPQSGAGVGGLLPSGTTAHGPGFLPVEELPPVPGNVI FT PAPTLVPCLFRAEPRNRILGGPLNLSGGGHFLATYAPGTVSSMLTLCFICCRY FT PDLRLPVGQQGRTLFSAFNTREHPPTLE" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '-' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..66 FT /number=1 FT /note="FIRST EXON; p-value: 0.030." FT exon 67..178 FT /number=2 FT /note="INTERNAL EXON; p-value: 0.057." FT exon 179..363 FT /number=3 FT /note="LAST EXON; p-value: 0.144." FT CONTIG join(NC_006583:5197002...5196937, 5192884...5192773, FT 5187563...5187379) XX SQ Sequence 363 BP; 63 A; 124 C; 92 G; 84 T; other; atgctctcac cgcagtccgg agcaggggtg ggcggcctcc tgccctcggg caccacggcc 60 cacgggcctg ggtttcttcc tgtagaggag ctgccccctg tgccagggaa tgtcatccct 120 gccccgaccc tggtcccctg ccttttccga gcggagcccc ggaatcgcat cctgggaggt 180 cctctgaact tgagcggagg aggacatttc ctcgccacct atgctcccgg caccgtgtcc 240 tcaatgctca ccctctgctt tatctgctgc cgataccctg accttcgttt gccagttggt 300 caacaaggca ggactctttt tagtgccttt aatacacgag aacatccacc aactttagaa 360 taa 363 // ID NC006583_97; SV 1; special; RNA; MAM; 780 BP. XX AC NC006583_97; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_97; NC006583_97. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..780 FT /organism="Canis familiaris" FT CDS 1..780 FT /protein_id="NC006583_97" FT /db_xref="trGEN:NC006583_97" FT /translation="MKCLGVMSVRPGMFTASVRAAPADKPGSVGEDLCTQHWA FT LAPKNNVQFAEFAKDRDEFLVMPSRLPGVFVMTDEPAPMLSQLHSILYLHFPG FT SSLLSVLLPQDRHRDRHHSLRTYMKDISTNVDQCNLTKRDKCAHGQYQKLLAP FT PGISESIMSPEGPAPRPCAACPPGVLDTHAARGTGLRQQKPDQAMEQQLQMLQ FT GLCAGPCRAAVRLAVGYAIIYENGHLGGLGKKPSWVVKTHSNGTPMCYSRVAS FT VRITTRLV" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '+' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..129 FT /number=1 FT /note="FIRST EXON; p-value: 0.460." FT exon 130..332 FT /number=2 FT /note="INTERNAL EXON; p-value: 0.362." FT exon 333..523 FT /number=3 FT /note="INTERNAL EXON; p-value: 0.767." FT exon 524..650 FT /number=4 FT /note="INTERNAL EXON; p-value: 0.525." FT exon 651..780 FT /number=5 FT /note="LAST EXON; p-value: 0.198." FT CONTIG join(NC_006583:5211908...5212036, 5212253...5212455, FT 5214168...5214358, 5217461...5217587, 5221313...5221442) XX SQ Sequence 780 BP; 172 A; 222 C; 218 G; 168 T; other; atgaaatgtc taggtgtcat gtctgtgaga ccgggaatgt ttaccgcctc tgtacgagct 60 gctcccgccg ataagcccgg ttctgttgga gaagacctgt gcacgcagca ctgggctctg 120 gcgcccaaga acaacgttca gtttgcagaa tttgcaaagg accgcgatga gttcctggtt 180 atgccctccc gtctccctgg cgtctttgtc atgactgatg agccagcacc aatgctgtct 240 caactacact ccatccttta tttgcacttc cccggctcct ccctgctgtc tgtcctcctg 300 ccccaggacc gccaccggga ccgccatcac tccttaagaa catacatgaa ggatatttct 360 accaatgtcg atcagtgcaa tcttaccaaa cgtgataagt gtgcacacgg gcagtatcag 420 aagctgttgg caccacctgg aatatcagaa tccatcatga gcccggaggg accagccccc 480 aggccgtgtg cggcctgccc tcctggagtc ctggacacac atgctgctcg gggaacaggg 540 ctgcggcagc agaaacctga tcaggccatg gagcagcagc tgcagatgct ccaggggctc 600 tgcgctgggc cctgcagggc agcagtgcgc ttggccgtag gatatgccat aatatatgaa 660 aatggtcatt tggggggctt ggggaagaaa cccagctggg tggtcaagac gcacagtaat 720 gggaccccga tgtgttacag cagagtggcc agtgtgcgca tcacgacaag gctggtgtga 780 // ID NC006583_98; SV 1; special; RNA; MAM; 1020 BP. XX AC NC006583_98; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_98; NC006583_98. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..1020 FT /organism="Canis familiaris" FT CDS 1..1020 FT /protein_id="NC006583_98" FT /db_xref="trGEN:NC006583_98" FT /translation="MVLFVLMWCVGGGDGGGDSVGIADVILVVVLVALGGNGV FT GVGGFPASGVADGGNGIGDTADDGGIGCALAVLVAGVGVSGDAVADNCGAGID FT GWVVIKDCGSLAIVDIAAINVGVQEFQLKQHNTEIQIKTTMRYHLTPVRMGKI FT NKAGNHKFWRGCGEKGTLLYCWWECELVQPLWKTVWRFLKELKIDLPYDPAIA FT LLGIYPKDSDAVKHRDTCTPMFIAAMSTIAKLWKEPRCPSKDEWIKKMWFMYT FT MGYSSAIRNDKYPPFASTWMELEGIMLSERMLFLAPAITVYAMGHCVFSYHLS FT IDSPSRLSMIYRGYISVSAFDDQADEETRCRVYQD" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '+' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..305 FT /number=1 FT /note="FIRST EXON; p-value: 0.060." FT exon 306..348 FT /number=2 FT /note="INTERNAL EXON; p-value: 0.009." FT exon 349..840 FT /number=3 FT /note="INTERNAL EXON; p-value: 0.036." FT exon 841..899 FT /number=4 FT /note="INTERNAL EXON; p-value: 0.990." FT exon 900..1020 FT /number=5 FT /note="LAST EXON; p-value: 0.965." FT CONTIG join(NC_006583:5225576...5225880, 5229434...5229476, FT 5230245...5230736, 5231351...5231409, 5233240...5233360) XX SQ Sequence 1020 BP; 254 A; 181 C; 298 G; 287 T; other; atggtgttgt tcgtgctaat gtggtgtgtt ggtggtggtg atggtggtgg tgattctgtt 60 ggtattgctg atgtgatatt ggttgtggtg ctggtggcat tgggtggtaa tggtgttggt 120 gttggtggtt ttcctgccag tggtgttgct gatggtggta atggaatcgg tgatactgct 180 gatgatggtg gtattgggtg tgcgttggca gtgttggtgg ctggtgttgg tgttagtggt 240 gatgctgttg ctgacaattg tggagctggt attgatggtt gggtggttat aaaagattgt 300 ggaagtttgg ctattgtgga cattgctgct ataaacgtcg gggtgcagga atttcagcta 360 aagcaacaca acacagaaat acaaatcaaa accacaatga gataccacct cacaccagtg 420 agaatgggga aaattaataa ggcaggaaac cacaaatttt ggagaggatg cggagaaaag 480 ggaaccctct tatactgttg gtgggaatgt gaactggtgc agccactctg gaaaactgtg 540 tggaggttcc tcaaagagtt aaaaatagac ctgccctacg acccagcaat tgcactgctg 600 gggatttatc ccaaagattc agatgcagtg aaacaccggg acacctgcac cccgatgttt 660 atagcagcaa tgtccacaat agccaaactg tggaaggagc ctcggtgtcc atcgaaagat 720 gaatggataa agaagatgtg gtttatgtat acaatgggat attcctcagc cattagaaat 780 gacaaatacc caccatttgc ttcgacgtgg atggaactgg agggtattat gctgagtgaa 840 aggatgctct ttctggcacc agccatcact gtttatgcca tgggacactg tgtcttcagc 900 tatcatctgt ccatcgactc tccctctcgg ctgtctatga tctatcgcgg ctatatttcc 960 gtctctgcct tcgacgatca agcagatgaa gagaccagat gccgggtcta ccaggactaa 1020 // ID NC006583_99; SV 1; special; RNA; MAM; 234 BP. XX AC NC006583_99; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_99; NC006583_99. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..234 FT /organism="Canis familiaris" FT CDS 1..234 FT /protein_id="NC006583_99" FT /db_xref="trGEN:NC006583_99" FT /translation="MVEVEVYMMVEAVMVEMEAEVMVEVVMVEVVMVGMEIGM FT MVEVVTVGMEAEVMVEVVVVCARKICMSYDVAWSVSPG" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '-' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..174 FT /number=1 FT /note="FIRST EXON; p-value: 0.259." FT exon 175..234 FT /number=2 FT /note="LAST EXON; p-value: 0.266." FT CONTIG join(NC_006583:5240549...5240376, FT 5236539...5236480) XX SQ Sequence 234 BP; 48 A; 20 C; 110 G; 56 T; other; atggtggagg tggaggtata catgatggtg gaggcggtga tggtggagat ggaagcagag 60 gttatggtgg aagtggtgat ggtggaagta gtgatggtgg ggatggagat aggcatgatg 120 gtggaggtag tgacagtggg aatggaggca gaggtgatgg tggaggtggt ggtggtctgc 180 gctcggaaga tctgcatgtc ctatgatgtt gcctggagtg tgtccccggg gtga 234 // ID NC006583_100; SV 1; special; RNA; MAM; 594 BP. XX AC NC006583_100; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_100; NC006583_100. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..594 FT /organism="Canis familiaris" FT CDS 1..594 FT /protein_id="NC006583_100" FT /db_xref="trGEN:NC006583_100" FT /translation="MTTTTTMTTEILKVQVWVKVWVQIRVQVWVQVWVWVQVR FT MQVFVGVGVVANEGAGAVAGVGAGVGVGVGVSAGAGAGADAGPTALAVTDRMS FT MCTLPAANQISTSLCVSKKRQFCYASNVPTVVHFICLFQRSAKRASLAQVLLL FT SPLKATNAVTCLPALFSLPGDELLSVVGGSDLPGANQATEEAGHQAGLDGEG" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '-' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..39 FT /number=1 FT /note="FIRST EXON; p-value: 0.448." FT exon 40..241 FT /number=2 FT /note="INTERNAL EXON; p-value: 0.144." FT exon 242..382 FT /number=3 FT /note="INTERNAL EXON; p-value: 0.100." FT exon 383..594 FT /number=4 FT /note="LAST EXON; p-value: 0.067." FT CONTIG join(NC_006583:5264936...5264898, 5263548...5263347, FT 5253195...5253055, 5248529...5248318) XX SQ Sequence 594 BP; 128 A; 123 C; 197 G; 146 T; other; atgacaacaa caacgacgat gacaacagaa atcctcaagg tacaagtgtg ggtgaaggtg 60 tgggtgcaga tacgggtgca ggtgtgggtg caagtgtggg tgtgggtgca ggttcgcatg 120 caggtatttg tgggtgtggg tgtggttgca aatgaaggtg caggtgcagt tgcaggtgtc 180 ggtgcaggtg tgggtgtggg tgtgggtgtg agtgcaggtg ctggtgcagg tgcagatgca 240 gggcctactg ccctggctgt aactgatcgg atgagtatgt gcacactgcc agctgccaac 300 caaataagca cgtctctttg tgtgtccaaa aaacgccaat tctgctatgc aagcaatgta 360 ccgacggtgg ttcatttcat atgtttattt cagcgctcag caaagagagc aagtttggct 420 caggtccttc tgctgtcccc gctgaaagca acaaacgctg ttacctgttt acctgctctg 480 ttctctctcc ccggggacga gttgctcagt gtggttggtg gcagtgacct ccctggggca 540 aaccaggcca ctgaagaagc tggacaccag gctggccttg atggagaagg ttag 594 // ID NC006583_101; SV 1; special; RNA; MAM; 1947 BP. XX AC NC006583_101; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_101; NC006583_101. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..1947 FT /organism="Canis familiaris" FT CDS 1..1947 FT /protein_id="NC006583_101" FT /db_xref="trGEN:NC006583_101" FT /translation="MRISHGHKGLGAAARWPQQRHLQRRSGFRGRLVQLGKCL FT TLLPSTERTLGKESPALCRSSWTLDEEERPTGTGIKCKIKAPLAFKGRVQGDL FT EPERRYRCNETPGHLHPMFIAAMATIAKLWKEPRCPSKDEWIKKMWSMYTMEY FT SSAIRNDKYPPFASMWMELEGMMLSEPLWKTVWRFLKELKTDLPYDPAIALLG FT IYPKDTEAVKRRDTCTPMFLAAMSTMAKLWKEPRCPSKDEWIKKMWSMYTMEY FT SSAIRNDKYPPFASMWMELEGMMLSELLFDEAQVIDLAFDKKDVNHMLKGYKP FT VKGYYTADGDQLPLSTLRMRKEEMGLCVDRGDFDEIVFKSIPEMSILKHKSGF FT RLEKQMHLNSKMDFPNMRKDMQMDPPPLTLNLYLPPTIHRSNAHSQSRTQPIC FT NSQDRTRKQKAQGTLVEQLKVTTVVRLSGQMGKGKPGEMALGLGRYLHRSGYC FT SIHFIHRVLAAAPTLVTSNVIQCNHQHPFLGLFDESTEIFTRSVPPSDKGSHR FT HFLSECSWCCSGFKIKFLTTLAQAYQQSVSKHRAGRTRRYKGDTAVPLSRQIH FT IAINISLVHEVLEIKFKIAIPNSPPDILDVSSYRCLRGLADIPGDLGQASWSS FT PAPTEAQPLGQCRCYGTVCARQARDE" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '+' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..206 FT /number=1 FT /note="FIRST EXON; p-value: 0.977." FT exon 207..290 FT /number=2 FT /note="INTERNAL EXON; p-value: 0.772." FT exon 291..513 FT /number=3 FT /note="INTERNAL EXON; p-value: 0.021." FT exon 514..831 FT /number=4 FT /note="INTERNAL EXON; p-value: 0.061." FT exon 832..908 FT /number=5 FT /note="INTERNAL EXON; p-value: 0.217." FT exon 909..1019 FT /number=6 FT /note="INTERNAL EXON; p-value: 0.162." FT exon 1020..1140 FT /number=7 FT /note="INTERNAL EXON; p-value: 0.105." FT exon 1141..1353 FT /number=8 FT /note="INTERNAL EXON; p-value: 0.081." FT exon 1354..1376 FT /number=9 FT /note="INTERNAL EXON; p-value: 0.316." FT exon 1377..1457 FT /number=10 FT /note="INTERNAL EXON; p-value: 0.179." FT exon 1458..1701 FT /number=11 FT /note="INTERNAL EXON; p-value: 0.104." FT exon 1702..1814 FT /number=12 FT /note="INTERNAL EXON; p-value: 0.989." FT exon 1815..1947 FT /number=13 FT /note="LAST EXON; p-value: 0.289." FT CONTIG join(NC_006583:5268028...5268233, 5268285...5268368, FT 5273764...5273986, 5278569...5278886, 5288788...5288864, FT 5289397...5289507, 5296847...5296967, 5304374...5304586, FT 5304863...5304885, 5307636...5307716, 5308640...5308883, FT 5310509...5310621, 5310793...5310925) XX SQ Sequence 1947 BP; 555 A; 494 C; 504 G; 394 T; other; atgcggatct cgcatggcca caagggcctg ggcgctgcag cacgatggcc ccagcagagg 60 cacctgcagc gtcggagcgg attccgaggg cggctggtac aactcggtaa atgcctcacc 120 cttctgccca gcacggagcg gactctgggg aaagagtccc cggcgctctg caggtcgtcg 180 tggacgttag acgaggagga gaggccaaca ggaaccggaa ttaaatgcaa gataaaagcg 240 cccctcgcct tcaagggacg cgtacaaggg gatttagaac cagaaagaag atacagatgc 300 aatgaaacgc cgggacacct gcacccgatg tttatagcag caatggccac aatagccaaa 360 ctgtggaagg agcctcggtg tccatcgaaa gatgaatgga taaagaagat gtggtctatg 420 tatacaatgg aatattcctc agccattaga aacgacaaat acccaccatt tgcttcaatg 480 tggatggaac tggagggtat gatgctgagt gaaccactct ggaaaactgt gtggaggttc 540 ctcaaagagt taaaaacaga cctgccctac gacccagcaa ttgcactgct ggggatttac 600 cccaaagata cagaggcagt gaaacgccgg gacacctgca ccccgatgtt tctagcagca 660 atgtccacaa tggccaaact gtggaaggag cctcggtgtc catcgaaaga tgaatggata 720 aagaagatgt ggtctatgta tacaatggaa tattcctcag ccattagaaa cgacaaatac 780 ccaccatttg cttcaatgtg gatggaactg gagggtatga tgctgagtga actcctgttt 840 gatgaagccc aagtgataga cttggctttt gacaaaaagg acgtgaacca catgctgaaa 900 ggatataagc cggtgaaggg ttattacacg gccgacggtg accagctgcc cctctcgacg 960 ctgaggatga gaaaggagga aatgggctta tgtgtcgatc ggggggattt cgatgagata 1020 gtcttcaagt ccataccaga aatgagcatt ttgaaacaca agtccggttt tcgtttagag 1080 aagcaaatgc acttgaactc caaaatggac ttccccaaca tgaggaagga catgcagatg 1140 gaccccccac ccctgactct gaacctctat ctgcccccca ctatccacag atcaaatgcc 1200 cactcccaga gcagaaccca gcccatctgc aactcccagg acaggacccg gaaacaaaaa 1260 gctcaaggaa cacttgttga gcagttgaag gtgaccacgg ttgtcaggct cagtggacag 1320 atgggaaaag gaaagcccgg ggagatggct ctcggtctgg gacgatacct gcacagatcc 1380 ggatattgct ccatccactt catccacaga gttctagctg cagccccaac acttgtgaca 1440 tccaatgtca tccaatgcaa ccatcagcat cctttcttgg gattgtttga cgaatccaca 1500 gaaatattca cgaggtctgt gccaccttca gacaagggaa gtcatcggca cttcttgagc 1560 gaatgcagct ggtgttgctc gggtttcaaa attaaattcc tgacaacact ggcccaggcc 1620 tatcagcaat cggtcagcaa acaccgtgca gggagaacaa gacgatacaa gggggacacc 1680 gctgtaccac tttcccgcca gatacatatt gctatcaaca tttcattggt tcatgaagtc 1740 ttagaaatta aattcaaaat tgccatcccc aatagtcccc cagatatctt agatgtatca 1800 tcctaccgct gcctgcgtgg attagcagac atcccggggg acctgggtca ggcctcctgg 1860 agcagcccgg cgcccacgga agcacagccg ctgggccagt gccgttgcta tggaaccgtg 1920 tgcgcaaggc aggctcgaga tgaataa 1947 // ID NC006583_102; SV 1; special; RNA; MAM; 1194 BP. XX AC NC006583_102; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_102; NC006583_102. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..1194 FT /organism="Canis familiaris" FT CDS 1..1194 FT /protein_id="NC006583_102" FT /db_xref="trGEN:NC006583_102" FT /translation="MPDFRLYYKAVVIKTVWYWHKNRHTDQWNRIENPEVDPQ FT LYGQLIFDKGGKTIHWKKDSLFNKWCWENWTSTCRRMKLDHYLAPYTKINSKW FT MKDLNVRQDSIKILEENTGNTLFELSHSNFLQDTSTKAKETKAKMNYWDFIKI FT RSFCTAKDTVNKTKRQPTEWEKIFSNDLSDKGLVSKIYKEFIKLNSKETNNPI FT MKWAKDMNRNLTEEDIDMANMHMRKCSASLAIREIQIQTTMRYHLTPVRMGKI FT NKAGNHKCWRGCGEKEPSYTVAMSTIAKLWKESRCPSKDEWIKKMWSMYTMEY FT YSAIRNDKYPPFASTWMELEGTMLSEDTHRVLPLVVLLSSGLSFLGPLTVGQR FT WWTRTPGPTLFLAGATQSPHSRQCRDQYTSEKTKKKTEQL" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '-' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..817 FT /number=1 FT /note="FIRST EXON; p-value: 0.265." FT exon 818..990 FT /number=2 FT /note="INTERNAL EXON; p-value: 0.088." FT exon 991..1140 FT /number=3 FT /note="INTERNAL EXON; p-value: 0.121." FT exon 1141..1194 FT /number=4 FT /note="LAST EXON; p-value: 0.104." FT CONTIG join(NC_006583:5318745...5317929, 5317761...5317589, FT 5314167...5314018, 5312813...5312760) XX SQ Sequence 1194 BP; 438 A; 266 C; 258 G; 232 T; other; atgccagatt tcaggttgta ctacaaagct gtggtcatca agacagtgtg gtactggcac 60 aaaaacagac atacagatca atggaacaga atagagaacc cagaagtgga ccctcaactt 120 tatggtcaac taatattcga caaaggagga aagactatcc actggaaaaa agacagtctc 180 ttcaataaat ggtgctggga aaattggaca tccacatgca gaagaatgaa actagaccac 240 tatcttgcac catacacaaa gataaactca aaatggatga aagatctaaa tgtgagacaa 300 gattccatca aaatcctaga ggagaacaca ggcaacaccc tttttgaact cagccacagt 360 aacttcttgc aagatacatc cacgaaggca aaagaaacaa aagcaaaaat gaactattgg 420 gacttcatca agataagaag cttttgcaca gcaaaggata cagtcaacaa aactaaaaga 480 caacctacag aatgggagaa gatattttca aatgacctat cagataaagg gctagtttcc 540 aagatctata aagaatttat taaactcaac agcaaagaaa ccaacaatcc aatcatgaaa 600 tgggcaaaag acatgaacag gaatctcaca gaggaagaca tagacatggc caacatgcac 660 atgagaaaat gctctgcatc acttgccatc agggaaatac aaatccaaac cacaatgaga 720 taccacctca caccagtgag aatggggaaa attaacaagg caggaaacca caaatgttgg 780 agaggatgcg gagaaaagga accctcttac actgttgcaa tgtccacaat agccaaactg 840 tggaaggagt ctcggtgtcc atcgaaagat gaatggataa agaagatgtg gtctatgtat 900 acaatggaat attactcagc cattagaaac gacaaatacc caccatttgc ttccacgtgg 960 atggaactgg agggtactat gctgagtgaa gacactcacc gagtcctccc tctggtggtc 1020 ttgctgagct cgggcctgtc cttcctgggc cccctcaccg tgggccagcg gtggtggact 1080 cggactccgg gccccaccct ctttctggcc ggagccacgc agtccccgca cagcaggcag 1140 tgcagagatc aatacacttc tgaaaagaca aaaaagaaga cggagcagct gtga 1194 // ID NC006583_103; SV 1; special; RNA; MAM; 738 BP. XX AC NC006583_103; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_103; NC006583_103. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..738 FT /organism="Canis familiaris" FT CDS 1..738 FT /protein_id="NC006583_103" FT /db_xref="trGEN:NC006583_103" FT /translation="MAAKILNKILANRIQQYIKKIIYHDQVGFISGTQGWFNT FT HKTINVIHHISKRKTKNHMILLLDAEKAFDKIQHPFLIKTLQSVGIEGTFLNI FT LKAIYEKPTANIILNGEALGAFPLRSGTRQGCPLSPLLFNIVLEVLASAIRQQ FT KDIKGIQIGKEEVKLSLFADDMILYIENPKASTPRLLELIQQFGSVAGYKINA FT QKSVAFLYTNNETEEREIKESIPFTIAPKSIRYLGINLTKEVKDLKL" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '+' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..738 FT /number=1 FT /note="SINGLE EXON; p-value: 0.812." FT CONTIG join(NC_006583:5318943...5319680 FT join(NC_006583:5318943...5319680) XX SQ Sequence 738 BP; 289 A; 168 C; 124 G; 157 T; other; atggctgcaa aaattctcaa caagatacta gccaatagga tccaacagta cattaagaaa 60 attatttacc atgaccaagt aggatttatc tccgggacac aaggctggtt caacactcat 120 aaaacaatca atgtgattca tcatatcagc aagagaaaaa ccaagaacca tatgatcctc 180 ttattagatg cagagaaagc atttgacaaa atacagcatc cattcctgat caaaactctt 240 caaagtgtag ggatagaggg aacattcctc aacatcttaa aagccatcta cgaaaagccc 300 acagcaaata tcattctcaa tggggaagca ctgggagcct ttcccctaag atcaggaaca 360 agacagggat gtccactctc accactgcta ttcaacatag tactggaagt cctagcctca 420 gcaatcagac aacaaaaaga cattaaaggc attcaaattg gcaaagaaga agtcaaactc 480 tccctcttcg ctgatgacat gatactctac atagaaaacc caaaagcctc caccccaaga 540 ttgctagaac tcatacagca attcggtagc gtggcaggat acaaaatcaa tgcccagaaa 600 tcagtggcat ttctatacac taacaatgag actgaagaaa gagaaattaa ggagtcaatc 660 ccatttacaa ttgcacccaa aagcataaga tacctaggaa taaacctaac caaagaggta 720 aaggatctaa aactatag 738 // ID NC006583_104; SV 1; special; RNA; MAM; 126 BP. XX AC NC006583_104; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_104; NC006583_104. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..126 FT /organism="Canis familiaris" FT CDS 1..126 FT /protein_id="NC006583_104" FT /db_xref="trGEN:NC006583_104" FT /translation="MPCRITRGAQAPSLLGVWGGGQQPAGGSLAIVDMAAMNI FT GV" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '-' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..83 FT /number=1 FT /note="FIRST EXON; p-value: 0.917." FT exon 84..126 FT /number=2 FT /note="LAST EXON; p-value: 0.017." FT CONTIG join(NC_006583:5330753...5330671, FT 5323752...5323710) XX SQ Sequence 126 BP; 19 A; 33 C; 50 G; 24 T; other; atgccgtgca ggatcacgcg cggggcccaa gcccccagcc tgctcggcgt gtggggcggc 60 gggcagcagc ctgctggcgg gagtttggct attgtggaca tggctgctat gaacattggg 120 gtgtaa 126 // ID NC006583_105; SV 1; special; RNA; MAM; 414 BP. XX AC NC006583_105; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_105; NC006583_105. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..414 FT /organism="Canis familiaris" FT CDS 1..414 FT /protein_id="NC006583_105" FT /db_xref="trGEN:NC006583_105" FT /translation="MRNLQLVMEGGGSLCEGCGPVTLPPNQQPADPQIHHMDR FT RLAASAHLTSPQPPDHTPNSSTGLQQLESASWQKRGVLSLGWMAHPRGILGPH FT DFMLKKLTDGTVGGRPWVAGLPQGGWAGMWMGALKVKDIRCYRQD" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '-' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..49 FT /number=1 FT /note="FIRST EXON; p-value: 0.030." FT exon 50..223 FT /number=2 FT /note="INTERNAL EXON; p-value: 0.009." FT exon 224..325 FT /number=3 FT /note="INTERNAL EXON; p-value: 0.431." FT exon 326..358 FT /number=4 FT /note="INTERNAL EXON; p-value: 0.698." FT exon 359..414 FT /number=5 FT /note="LAST EXON; p-value: 0.669." FT CONTIG join(NC_006583:5369904...5369856, 5366718...5366545, FT 5354035...5353934, 5353282...5353250, 5353129...5353074) XX SQ Sequence 414 BP; 96 A; 124 C; 122 G; 72 T; other; atgaggaacc tgcagctggt catggaaggt ggtggcagcc tctgtgaggg atgtggccca 60 gtcaccctgc cacccaacca acagccagct gacccccaga tacatcacat ggacagacga 120 ctggctgcat cagcccatct caccagccca cagcccccag accacacccc aaatagctcc 180 acgggcctcc aacaactaga gtctgcatca tggcagaaaa gaggtgtgct ctcattgggt 240 tggatggccc atcccagagg catccttggt cctcacgact tcatgttaaa gaagctgacc 300 gatgggacgg ttggtggtcg gccctgggtg gccggcctgc cgcagggtgg ctgggcaggc 360 atgtggatgg gagcactgaa ggtcaaagac atccgctgct acaggcagga ttga 414 // ID NC006583_106; SV 1; special; RNA; MAM; 1473 BP. XX AC NC006583_106; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_106; NC006583_106. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..1473 FT /organism="Canis familiaris" FT CDS 1..1473 FT /protein_id="NC006583_106" FT /db_xref="trGEN:NC006583_106" FT /translation="MKEGTVGSIAYVCCPMDMLFRFVHIGFAMTPLTQDGCAP FT SVYVGWKWLKGKHRCSWCFGASSGGSDDDNGTFPVWLREVSEVMCNNARLLRM FT LIAVTPITGAFYLYSSKFTCSCVKLYHLELVRKRRSREVCAGTICMQDAHPTG FT AISYLPRAHRRQSFGKTLYVHATDKTQREREAETQAEGEAGSVQGARCGTRFQ FT DPEIRPWAEGRRSTTRPQAPPESCLRGAAVCPGARGQDPRQPAAVRSSRGEAG FT GAWLAWAQRTGRPADTLHPQGPGAAPGGSAFEGKPGVPRTRPQGQRRNGQSAE FT ADGSGFRRIAKVSQEANGESTPHTSVDSIHPGEKNVISYPSNDGRNMIKVVSS FT GLSTAAIIPTPVLARLHLKHEHFVTNLAVDYEDSVYRDFLRLFCITINNLLLS FT SHKDVPAIVTLTCSICPEFLPNAAGARDPENRTCWNHEGSSACKIFPAASTDK FT PELGATGEENYVEGPLIYTEQPADIGL" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '-' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..10 FT /number=1 FT /note="FIRST EXON; p-value: 0.186." FT exon 11..134 FT /number=2 FT /note="INTERNAL EXON; p-value: 0.141." FT exon 135..148 FT /number=3 FT /note="INTERNAL EXON; p-value: 0.052." FT exon 149..359 FT /number=4 FT /note="INTERNAL EXON; p-value: 0.441." FT exon 360..417 FT /number=5 FT /note="INTERNAL EXON; p-value: 0.378." FT exon 418..510 FT /number=6 FT /note="INTERNAL EXON; p-value: 0.623." FT exon 511..705 FT /number=7 FT /note="INTERNAL EXON; p-value: 0.464." FT exon 706..932 FT /number=8 FT /note="INTERNAL EXON; p-value: 0.706." FT exon 933..1072 FT /number=9 FT /note="INTERNAL EXON; p-value: 0.879." FT exon 1073..1306 FT /number=10 FT /note="INTERNAL EXON; p-value: 0.324." FT exon 1307..1473 FT /number=11 FT /note="LAST EXON; p-value: 0.239." FT CONTIG join(NC_006583:5445873...5445864, 5444479...5444356, FT 5428125...5428112, 5425500...5425290, 5424057...5424000, FT 5408435...5408343, 5402784...5402590, 5402230...5402004, FT 5400757...5400618, 5390814...5390581, 5383158...5382992) XX SQ Sequence 1473 BP; 336 A; 411 C; 419 G; 307 T; other; atgaaggaag ggaccgtggg tagcattgct tatgtttgct gcccgatgga catgcttttc 60 cgttttgtac acattggttt tgccatgacc ccactaactc aggacggctg tgccccttct 120 gtgtatgttg gctggaaatg gctcaaaggg aagcacagat gtagctggtg cttcggtgcc 180 tcgtctggag gcagtgatga tgataatggt actttcccag tgtggctacg agaggtcagc 240 gaggtgatgt gtaacaatgc cagattatta agaatgctca ttgctgttac cccaatcaca 300 ggagcctttt atctgtactc ctccaaattc acctgttcct gtgtaaaatt atatcatttg 360 gaacttgtaa ggaaacgcag gtcgagagaa gtctgtgcgg ggaccatctg catgcaggac 420 gcccacccca cgggtgccat ctcctacctg cccagagccc atcgcagaca gtccttcggc 480 aagaccctct atgtccacgc aacagacaag acacagagag agagagaggc agagacacag 540 gcagagggag aagcaggctc cgtgcaggga gcccgatgtg ggactcgatt ccaggacccc 600 gagatcaggc cctgggctga aggcagacgc tcaaccacca ggccgcaggc gccgccggag 660 agctgtctgc gaggagctgc tgtgtgccct ggagcacgcg gccaggaccc gcgccagccc 720 gcggccgtgc gctcctcccg gggcgaggca gggggtgctt ggctggcctg ggcccagagg 780 acggggcggc ccgcggacac gctgcacccc caaggccccg gagctgctcc tgggggctct 840 gcgtttgagg gcaaaccggg tgttccacgt acgaggcctc aggggcagag aaggaacggc 900 cagagcgccg aggccgacgg cagcggcttc aggaggatcg ctaaagtttc ccaggaggcc 960 aatggagaga gcaccccaca cacgtcagtg gactctatcc atccaggaga aaagaacgtc 1020 atctcatacc cgagtaatga tggtcgtaac atgattaagg tcgtctcttc tggtctcagc 1080 accgctgcaa taattcccac acctgtgctt gctcgactgc atctcaagca tgagcacttt 1140 gtaactaacc tggcagtgga ctatgaagac agtgtctacc gtgatttctt gcgtctcttc 1200 tgcatcacaa ttaataattt attgctgtcc tcccataagg atgttcctgc tattgttacc 1260 ttgacctgca gcatctgccc tgaattcctg cccaacgccg cgggggctcg ggatcctgag 1320 aaccgaacat gctggaacca cgaaggctct tccgcctgca agatctttcc agcagcttct 1380 actgacaaac ctgaacttgg tgcaaccggc gaagaaaact atgtagaggg tcccctcatc 1440 tacacagagc agccagcgga cataggttta tag 1473 // ID NC006583_107; SV 1; special; RNA; MAM; 369 BP. XX AC NC006583_107; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_107; NC006583_107. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..369 FT /organism="Canis familiaris" FT CDS 1..369 FT /protein_id="NC006583_107" FT /db_xref="trGEN:NC006583_107" FT /translation="MFLKELKIELPYDPAIALPEIYPKDADAVKGRDTCTPMF FT LAAMSTRDKLWKEPRGPPKDEWIKKMWSMHTMEYYSAIRKDKYSPFASMWMEP FT EGIMFSEAVCKVDIGKLSGRVASCLLMVFF" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '+' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..297 FT /number=1 FT /note="FIRST EXON; p-value: 0.827." FT exon 298..369 FT /number=2 FT /note="LAST EXON; p-value: 0.461." FT CONTIG join(NC_006583:5456520...5456816, FT 5457407...5457478) XX SQ Sequence 369 BP; 116 A; 75 C; 90 G; 88 T; other; atgtttctca aagagttaaa aatagagcta ccctacgacc cagcaattgc actgccggag 60 atttacccca aagatgcaga tgctgtgaaa ggccgagaca cctgcacccc aatgtttcta 120 gcagcaatgt ccacaagaga caaactgtgg aaggagcctc ggggtccacc aaaagatgaa 180 tggataaaga agatgtggtc tatgcataca atggaatatt actcagccat cagaaaggac 240 aaatactcac catttgcttc aatgtggatg gaaccagagg gtattatgtt cagtgaagct 300 gtgtgtaaag tggacattgg taaattgtca ggcagagtag ccagctgtct gctgatggtt 360 ttcttctga 369 // ID NC006583_108; SV 1; special; RNA; MAM; 747 BP. XX AC NC006583_108; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_108; NC006583_108. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..747 FT /organism="Canis familiaris" FT CDS 1..747 FT /protein_id="NC006583_108" FT /db_xref="trGEN:NC006583_108" FT /translation="MPDFKVYYKAVVIKTVWYWHKNRHIDQWNRIESTEMGPQ FT LCGQLIFDKAGKTIHWKKDSPFNKWCWENWTATCRRMKLDHSLTPYTKINSKW FT MKDLHVRQESTKILEENTGNTCFEFGHSNFLQDTSMKARETKAKMNSWDFIKI FT KSFCTAKETVNKTKRQPTEWEKIFANDLSDKGLISKIYKELIKLNSKETNNPI FT LKWAKNMNRNFTKEGIDMAKHLLLRITGHQENTNQNHNEIPPHTSENGEN" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '-' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..747 FT /number=1 FT /note="SINGLE EXON; p-value: 0.922." FT CONTIG join(NC_006583:5463861...5463115 FT join(NC_006583:5463861...5463115) XX SQ Sequence 747 BP; 313 A; 156 C; 139 G; 139 T; other; atgccagatt tcaaggtgta ctacaaagct gtggtcatca agacagtgtg gtactggcac 60 aaaaacagac acatagatca atggaacaga atagagagca cagaaatggg ccctcaactc 120 tgtggtcaac taatattcga caaagcagga aagactatcc actggaaaaa agacagtccc 180 ttcaataaat ggtgctggga aaattggaca gccacgtgca gaagaatgaa actagaccat 240 tctcttacac catacacaaa gataaactca aaatggatga aagatctaca tgtgagacaa 300 gaatccacca aaatcctaga ggaaaacaca ggcaacacct gttttgaatt tggccacagc 360 aacttcttgc aagatacatc tatgaaggca agggaaacaa aagcaaaaat gaactcttgg 420 gacttcatca agataaaaag cttctgcaca gcaaaagaaa cagtcaacaa aactaaaaga 480 caacctacag aatgggagaa gatatttgca aatgacctat cagataaagg gctcatatcc 540 aagatctata aagaacttat taaactcaac agcaaagaaa caaataatcc aatcttgaaa 600 tgggccaaaa acatgaacag aaatttcacc aaagaaggca tagacatggc caagcacctg 660 ttgctccgca tcactggcca tcaggaaaat acaaatcaaa accacaatga gataccacct 720 cacaccagtg agaatgggga aaattaa 747 // ID NC006583_109; SV 1; special; RNA; MAM; 1017 BP. XX AC NC006583_109; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_109; NC006583_109. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..1017 FT /organism="Canis familiaris" FT CDS 1..1017 FT /protein_id="NC006583_109" FT /db_xref="trGEN:NC006583_109" FT /translation="MIPCALALDTSRLGPFALTCHVTVWTRSRAYTDTDPSGG FT KLSREAQSTSPRESTEVNLSPRQGSLMSDISEDCPHQPVEVNSRNVQAMTAMC FT KIISGSISDSGTLSTKGKPSSVTHQWVHEFRAPEPPPVCLCVEPLTAGTQAEL FT CGCAAGPSPLGHRSPATLQGLYRPPALCRLLAARLQGLDRKSPMNWENHLTSE FT VLGHVEKLSVSPHDPVYSLIVRENSHWLVLHLHRGDDESLVAEPPRVTFSSWT FT QSGAKMARRPKARKSGLESEVAWKSDSGKQAPGLQPMRRLRSGAQELAEQQTP FT LRGRKPQASKQNISDETSVQAEREYTCGGSCRFQ" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '-' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..115 FT /number=1 FT /note="FIRST EXON; p-value: 0.949." FT exon 116..191 FT /number=2 FT /note="INTERNAL EXON; p-value: 0.747." FT exon 192..248 FT /number=3 FT /note="INTERNAL EXON; p-value: 0.638." FT exon 249..324 FT /number=4 FT /note="INTERNAL EXON; p-value: 0.003." FT exon 325..602 FT /number=5 FT /note="INTERNAL EXON; p-value: 0.554." FT exon 603..714 FT /number=6 FT /note="INTERNAL EXON; p-value: 0.887." FT exon 715..763 FT /number=7 FT /note="INTERNAL EXON; p-value: 0.024." FT exon 764..945 FT /number=8 FT /note="INTERNAL EXON; p-value: 0.033." FT exon 946..972 FT /number=9 FT /note="INTERNAL EXON; p-value: 0.025." FT exon 973..998 FT /number=10 FT /note="INTERNAL EXON; p-value: 0.030." FT exon 999..1017 FT /number=11 FT /note="LAST EXON; p-value: 0.092." FT CONTIG join(NC_006583:5508289...5508175, 5505249...5505174, FT 5504302...5504246, 5493962...5493887, 5489175...5488898, FT 5488381...5488270, 5486361...5486313, 5480629...5480448, FT 5475607...5475581, 5470234...5470209, 5469926...5469908) XX SQ Sequence 1017 BP; 230 A; 307 C; 299 G; 181 T; other; atgattccct gcgctctagc cttggacaca tcccggctcg gcccgttcgc cctcacctgc 60 catgtgaccg tgtggaccag gagccgcgct tacacggaca cagatccctc aggaggcaag 120 ctgagcagag aagcccagag caccagccct cgagaaagca cagaagtgaa tttgtcacct 180 cgtcagggaa gcctgatgtc ggacatcagt gaggattgtc cacaccaacc cgtggaagtg 240 aactccagaa acgtccaagc tatgacagcc atgtgtaaga tcatctccgg ctcaatttct 300 gacagtggca ctttgagtac aaaggggaag ccatccagcg tcacccacca gtgggtccat 360 gagttccgtg ctcctgagcc accaccggtt tgcttgtgcg tggagcccct cacagcagga 420 actcaggcag agctctgcgg ctgtgcagca gggccctccc ccctgggcca ccgctccccc 480 gccaccctgc agggcctcta caggccccct gctctctgcc gcctgctggc agccaggctt 540 cagggtttgg acaggaaatc tccaatgaac tgggagaacc acctgacgag tgaggtgctg 600 gggcatgtgg agaaactttc tgtctccccc catgatccag tgtactctct aattgtccgc 660 gagaactccc actggcttgt gctgcacctg caccggggtg atgatgagtc cctggtggcg 720 gagcccccac gggtgacctt ttcgtcctgg acccagagtg gagcaaaaat ggcaaggcga 780 ccaaaggcac gaaagagtgg gctggaaagc gaggtggcat ggaaatcgga ctcagggaag 840 caggccccag gtctgcagcc gatgcgcagg ctgagatcag gggctcagga gctggcggag 900 cagcagacgc cgctgagagg gcggaaaccc caagcatcca aacagaacat cagcgatgaa 960 acctccgtgc aggctgagag agaatacact tgtggtggat cctgccgttt tcagtga 1017 // ID NC006583_110; SV 1; special; RNA; MAM; 492 BP. XX AC NC006583_110; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_110; NC006583_110. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..492 FT /organism="Canis familiaris" FT CDS 1..492 FT /protein_id="NC006583_110" FT /db_xref="trGEN:NC006583_110" FT /translation="MPFTLLLCVDATSQPLDSVTGTMKDHRLGKMRIGRDSGF FT EQQCGIFKETVLKDSTKVRCGQALLALDLWLPVLFCKNSTVYCFLPEEFLVVP FT SLLVALKVQDSMVEFEITRIKGRRENAVDGLPQLLHSELEPKLVQIVSAHFGL FT CFPGPGASVSCGQKATSS" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '-' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..130 FT /number=1 FT /note="FIRST EXON; p-value: 0.813." FT exon 131..324 FT /number=2 FT /note="INTERNAL EXON; p-value: 0.647." FT exon 325..429 FT /number=3 FT /note="INTERNAL EXON; p-value: 0.117." FT exon 430..480 FT /number=4 FT /note="INTERNAL EXON; p-value: 0.011." FT exon 481..492 FT /number=5 FT /note="LAST EXON; p-value: 0.019." FT CONTIG join(NC_006583:5557555...5557426, 5553499...5553306, FT 5532188...5532084, 5514909...5514859, 5512445...5512434) XX SQ Sequence 492 BP; 108 A; 125 C; 134 G; 125 T; other; atgcccttta ccctgctgct ctgtgtagat gcgacttcgc agcccctgga ctcggtcacc 60 gggaccatga aggaccacag gctgggaaag atgaggatag gcagggactc gggatttgag 120 cagcagtgtg gcatcttcaa ggagacagtt ctaaaagaca gtaccaaagt acgatgtggt 180 caggctctat tggcacttga cctctggctt cctgttttgt tttgcaagaa ctccacagtc 240 tactgtttcc tccccgaaga attcctggtt gtgccttcct tgcttgtggc gttgaaagta 300 caagattcca tggtggaatt cgagatcact cgcattaaag gcaggagaga aaatgctgtg 360 gatggcttac cccagctgct gcattctgaa ctggaaccca aactcgtgca gatagtgagt 420 gcccactttg gactctgctt tcctggccct ggagcctcgg tgtcctgcgg gcagaaggcg 480 acctcctctt ag 492 // ID NC006583_111; SV 1; special; RNA; MAM; 303 BP. XX AC NC006583_111; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_111; NC006583_111. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..303 FT /organism="Canis familiaris" FT CDS 1..303 FT /protein_id="NC006583_111" FT /db_xref="trGEN:NC006583_111" FT /translation="MFLFLTGKLAVIVLTMRCFHTDGAQGSQQLCNSGTNNTH FT LHRVSPPWAHHSPLALGSTDSASVLCLGDIVNSDITNKKSTKMQNENMCHVKD FT DVGPLSAV" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '+' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..80 FT /number=1 FT /note="FIRST EXON; p-value: 0.874." FT exon 81..303 FT /number=2 FT /note="LAST EXON; p-value: 0.632." FT CONTIG join(NC_006583:5590862...5590941, FT 5592501...5592723) XX SQ Sequence 303 BP; 86 A; 77 C; 68 G; 72 T; other; atgtttctgt ttctaactgg gaagttggct gttattgtcc tgacgatgcg ctgcttccac 60 acggatggag ctcagggcag ccagcagctc tgtaactcag gaacaaacaa cactcatcta 120 cacagagtat ctcctccatg ggctcatcac agccctcttg cccttggaag cacagacagc 180 gcttcagtcc tctgcttggg ggatattgtc aacagtgaca tcaccaacaa aaaaagcaca 240 aaaatgcaaa atgaaaacat gtgtcacgta aaagatgatg taggaccctt gtctgcggtc 300 tga 303 // ID NC006583_112; SV 1; special; RNA; MAM; 468 BP. XX AC NC006583_112; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_112; NC006583_112. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..468 FT /organism="Canis familiaris" FT CDS 1..468 FT /protein_id="NC006583_112" FT /db_xref="trGEN:NC006583_112" FT /translation="MCKAAAPTALPRDLCTDILHSPSVANTYKPVPGGSPLEH FT RALGHMGGSAGDSDDDDDGGDDSDDDEDDDGDEDNKDDDGDNNNYDSDDGDDT FT IMKTMMMMKLKIMMMMMALPFLGAAQDPELYPPAPWDLGPALLESCSGGYAAP FT SAQSRHLSCS" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '-' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..79 FT /number=1 FT /note="FIRST EXON; p-value: 0.679." FT exon 80..148 FT /number=2 FT /note="INTERNAL EXON; p-value: 0.614." FT exon 149..327 FT /number=3 FT /note="INTERNAL EXON; p-value: 0.485." FT exon 328..468 FT /number=4 FT /note="LAST EXON; p-value: 0.033." FT CONTIG join(NC_006583:5609709...5609631, 5609307...5609239, FT 5608140...5607962, 5596970...5596830) XX SQ Sequence 468 BP; 121 A; 106 C; 138 G; 103 T; other; atgtgcaagg cagctgcccc cacagctctg ccccgagacc tctgcacaga catcctgcac 60 agcccaagtg tagcaaacac ctataagcct gtgccagggg gcagtccctt agaacaccga 120 gctcttgggc acatgggtgg ctcagcaggt gatagtgatg atgatgatga tggtggtgat 180 gacagtgatg atgatgaaga tgatgatggt gatgaagata ataaagatga tgatggtgac 240 aacaataatt atgacagtga tgatggtgat gatacaataa tgaagacaat gatgatgatg 300 aagttgaaga taatgatgat gatgatggct ctacctttcc tgggggcagc gcaggatcct 360 gagctgtatc ccccggcacc ctgggatctg gggcctgcgc tgctggaatc gtgctctggg 420 ggctatgcag ccccctctgc acagagccgc cacctgagct gctcctga 468 // ID NC006583_113; SV 1; special; RNA; MAM; 207 BP. XX AC NC006583_113; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_113; NC006583_113. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..207 FT /organism="Canis familiaris" FT CDS 1..207 FT /protein_id="NC006583_113" FT /db_xref="trGEN:NC006583_113" FT /translation="MPIHIKLKNKEHVTEALHRAKASSLAPIYISNKWGITQL FT NTDDFDNMVAEKRFIQMATGSNTFLIIAP" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '+' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..81 FT /number=1 FT /note="FIRST EXON; p-value: 0.951." FT exon 82..207 FT /number=2 FT /note="LAST EXON; p-value: 0.998." FT CONTIG join(NC_006583:5611994...5612074, FT 5612135...5612260) XX SQ Sequence 207 BP; 64 A; 53 C; 44 G; 46 T; other; atgcccatcc atatcaagct gaagaacaag gagcatgtga ctgaggccct acacagggcc 60 aaggcaagtt ccctggcccc aatctacatc tccaacaagt ggggcattac tcagttaaat 120 acagatgact ttgacaacat ggtggctgaa aaacggttca tccagatggc tacgggatcc 180 aatacattct taatcatagc tccttga 207 // ID NC006583_114; SV 1; special; RNA; MAM; 666 BP. XX AC NC006583_114; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_114; NC006583_114. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..666 FT /organism="Canis familiaris" FT CDS 1..666 FT /protein_id="NC006583_114" FT /db_xref="trGEN:NC006583_114" FT /translation="MATTLSCAMVSLLSLLLRCLRHGYPAYSVGMDGLVRWLP FT PGPKPEWLVERRLSNFLKPALVGLGQCFTMYSRTRTLAQTAAVILWGPVSEHR FT GNACNKTETKIGVPSVVPKIANPRNHQGADTDASTQRFIYKLKLGSKYTQHSG FT AGTWTPRNDSDVQPELGTMKTEIQLRLYLDSEDVKVDFPCFLSHWRAESRPVG FT AQRRALRSPALEADEHAFDGKDN" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '-' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..149 FT /number=1 FT /note="FIRST EXON; p-value: 0.731." FT exon 150..277 FT /number=2 FT /note="INTERNAL EXON; p-value: 0.764." FT exon 278..455 FT /number=3 FT /note="INTERNAL EXON; p-value: 0.592." FT exon 456..534 FT /number=4 FT /note="INTERNAL EXON; p-value: 0.678." FT exon 535..666 FT /number=5 FT /note="LAST EXON; p-value: 0.863." FT CONTIG join(NC_006583:5638704...5638556, 5638266...5638139, FT 5626911...5626734, 5626239...5626161, 5625203...5625072) XX SQ Sequence 666 BP; 158 A; 172 C; 192 G; 144 T; other; atggccacca ccctgtcatg tgccatggtg tccttgctgt cactgctgct gcgttgtctc 60 aggcatggct acccagcata ttctgtaggc atggatggcc tggtgaggtg gcttcctcct 120 ggccccaagc cagagtggct tgtggagagg aggctaagca acttcctcaa gccagctctt 180 gtggggctcg gtcagtgttt caccatgtac agccgcacac gcacactggc acagactgcc 240 gcagttatct tgtggggtcc tgtttctgaa cacagaggaa atgcttgcaa caaaacagaa 300 acgaaaattg gggttccaag tgttgtgccc aagatcgcga atccaagaaa ccaccaagga 360 gccgacaccg atgcaagcac acaaaggttt atttacaagc tcaagcttgg gtccaagtat 420 acccaacaca gtggagcggg gacttggacc ccgagaaatg attccgacgt gcagccagag 480 ttgggaacca tgaaaacgga aatccagtta cgtctgtacc tggactctga ggatgtgaag 540 gtggatttcc catgcttcct gtcacactgg cgggctgaga gcaggcctgt gggtgctcag 600 cggagggccc tgcgcagccc tgctctggag gctgatgagc atgcctttga tggaaaggat 660 aactag 666 // ID NC006583_115; SV 1; special; RNA; MAM; 1269 BP. XX AC NC006583_115; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_115; NC006583_115. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..1269 FT /organism="Canis familiaris" FT CDS 1..1269 FT /protein_id="NC006583_115" FT /db_xref="trGEN:NC006583_115" FT /translation="MQGSIPGPRDHDLSQRQTLNHRATQLQLAVGYKDVKLHS FT VRCGVLGMPLLKTMALSGVHHCCGQTTEETRKTGLRHQGFVTVQDHQPVLGLM FT VLDHQLKRGQAAGTEAQRGGKLTRNSKKGAQGGKAERARKLKMKLASSLEELR FT PLRPPGAGGEAPRPLGNSQACWKQKEQFEAFHITILLSGDPATTEDMLSLPNV FT KDSVGVCVYTEWYVADVDTQSASREVIVSLLCRMVGSGAIWGPVHLPEGECPT FT VHGRRQRPPQKENYGSISLMDTDAKFLAKILANRIQQYIKKIIHHDQVGFIPG FT MQDTKIDSKWMKDLHVRQESIKILEENTGNTLFDLGHSNFLQHASMKARETKA FT KMSYWDLIKIKSFCTAKETLNKTKRQPTEWERTFANDLSDKGLVSKIYKELMK FT LNSKETNNPIMK" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '+' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..75 FT /number=1 FT /note="FIRST EXON; p-value: 0.332." FT exon 76..165 FT /number=2 FT /note="INTERNAL EXON; p-value: 0.240." FT exon 166..312 FT /number=3 FT /note="INTERNAL EXON; p-value: 0.197." FT exon 313..466 FT /number=4 FT /note="INTERNAL EXON; p-value: 0.225." FT exon 467..507 FT /number=5 FT /note="INTERNAL EXON; p-value: 0.137." FT exon 508..767 FT /number=6 FT /note="INTERNAL EXON; p-value: 0.010." FT exon 768..919 FT /number=7 FT /note="INTERNAL EXON; p-value: 0.059." FT exon 920..1269 FT /number=8 FT /note="LAST EXON; p-value: 0.804." FT CONTIG join(NC_006583:5671063...5671137, 5672385...5672474, FT 5674662...5674808, 5675218...5675371, 5675492...5675532, FT 5685409...5685668, 5707012...5707163, 5708312...5708661) XX SQ Sequence 1269 BP; 406 A; 300 C; 331 G; 232 T; other; atgcagggct ccatcccagg accccgggat cacgacctga gccaaaggca gacgctcaac 60 caccgagcca cccagttgca actagcagtt ggatacaagg atgtgaagct ccacagcgta 120 cgatgtgggg tcctagggat gccgttactt aaaaccatgg cattgagtgg agttcatcac 180 tgctgcggtc agaccacgga ggagacacgg aaaaccgggt taagacacca gggctttgtc 240 acggtccagg accaccagcc agtgctgggg ctgatggtcc tggaccatca gctgaaacgg 300 ggccaggcgg caggaactga ggcacagaga ggaggaaaat tgactagaaa cagcaagaaa 360 ggggctcagg gtgggaaggc tgaacgcgca cggaagctga aaatgaaact cgcaagttcc 420 ttggaggagc tccggccact ccggccacca ggggcaggtg gtgaagcgcc ccggcccctg 480 gggaacagtc aggcctgctg gaagcagaag gaacagtttg aagcctttca cataacaata 540 ctactttctg gagatccagc aactacagaa gatatgctga gtttgcccaa tgtgaaggac 600 tcagtgggtg tctgtgtcta cactgagtgg tatgtggcag atgtggacac ccagtctgct 660 tcacgggaag tcattgtcag tctgctgtgc aggatggtgg gctctggtgc tatctggggc 720 ccagtgcatc tacctgaggg agaatgcccc actgtccatg gccgcagaca aagacctccc 780 caaaaggaga actatggatc aatatccctg atggacacag atgcaaaatt tctcgccaag 840 atactagcca ataggatcca acagtacatt aagaagatca ttcaccatga tcaagtggga 900 tttatccccg ggatgcaaga cacaaagata gactcaaaat ggatgaaaga tctacatgtg 960 agacaagaat ccatcaaaat cctagaagaa aacacaggca ataccctttt tgatcttggc 1020 cacagcaact tcttgcaaca tgcatctatg aaggcaaggg aaacaaaagc aaaaatgagc 1080 tactgggacc taatcaagat aaagagcttc tgcacagcaa aagaaacact caacaaaact 1140 aaaagacaac ctacagaatg ggagaggaca tttgcaaatg acctatcaga taaagggcta 1200 gtatccaaga tctataagga acttatgaaa ctcaacagca aagaaacaaa caatccaatc 1260 atgaaatga 1269 // ID NC006583_116; SV 1; special; RNA; MAM; 597 BP. XX AC NC006583_116; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_116; NC006583_116. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..597 FT /organism="Canis familiaris" FT CDS 1..597 FT /protein_id="NC006583_116" FT /db_xref="trGEN:NC006583_116" FT /translation="MAILMLITETGTRKEEAKQRSKVKRKRKDGPGNISCVRS FT HFMPGTALMPEAAICQDCKEKLQKGKDQWSFTSPNIRHSQSQVCGQNKLCATQ FT GLIHIPSQQNLYVTCHIGGAGTRCTLSRGPPAPGPSHFYPPDGMLPRLPKISS FT LKGEKELNGATVGFRKTPAADLYFDFSHAENLDAHNIPRDTRDIQTSDHQQKG" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '+' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..151 FT /number=1 FT /note="FIRST EXON; p-value: 0.797." FT exon 152..276 FT /number=2 FT /note="INTERNAL EXON; p-value: 0.829." FT exon 277..364 FT /number=3 FT /note="INTERNAL EXON; p-value: 0.505." FT exon 365..487 FT /number=4 FT /note="INTERNAL EXON; p-value: 0.400." FT exon 488..597 FT /number=5 FT /note="LAST EXON; p-value: 0.345." FT CONTIG join(NC_006583:5713342...5713492, 5714378...5714502, FT 5726157...5726244, 5726365...5726487, 5726673...5726782) XX SQ Sequence 597 BP; 188 A; 163 C; 140 G; 106 T; other; atggcaatcc tcatgctcat cacagagaca ggaacccgca aggaggaagc aaagcagaga 60 agcaaagtga agagaaaaag gaaggatgga ccaggcaata tcagctgtgt gcgcagccac 120 ttcatgcctg gaactgccct gatgcctgag gcagctatct gccaggattg taaagagaag 180 cttcagaaag gcaaggatca atggtccttc acatctccca acatcagaca cagtcaaagt 240 caagtctgtg gccagaataa actgtgtgca acacaggggc tgatacacat cccatcacaa 300 caaaacctct atgtcacctg ccacattggc ggtgcaggca ccaggtgcac cctgtcacgc 360 ggacctccag cgccagggcc atcccacttt tacccgccgg atggcatgtt acctcgactc 420 cccaaaataa gctcactgaa aggggaaaaa gagctcaatg gagccacagt gggcttcaga 480 aagacaccag ctgctgacct ctactttgac ttctctcatg ctgaaaattt ggatgcacac 540 aacataccca gagataccag agatatccag acatctgatc accagcagaa aggatga 597 // ID NC006583_117; SV 1; special; RNA; MAM; 1443 BP. XX AC NC006583_117; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_117; NC006583_117. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..1443 FT /organism="Canis familiaris" FT CDS 1..1443 FT /protein_id="NC006583_117" FT /db_xref="trGEN:NC006583_117" FT /translation="MGRLCQSHEIPGCLWVELIPAAEVNLNYRTVRAAQFLGV FT FTFYNRDKILGKFFPPHKSVSTSAHVTQMRNTSAPPVPREAALHQSNRCGPKP FT LPERGNGRPAGTRTGPRVLGAFFHGGHRRQRARAAWGMELAAGNLSEGNASGP FT EPPAPEPRPLFGIGIGVENFITLVLFGLIFAFGVLGNSLVITVLARSKPGKPR FT STTNLFILNLSIADLAYLLFCIPFQATVYALPTWVLGAFICRFIHYFFTVSML FT VSIFTLAAMSVDRYVAIVHSRRSSSLRVSRNALLGVGFIWALSIAMASPVAYH FT RRLFHWEVRNQTFCWEEWPNQGHKKAYVVCTFVFGYLLPLLLICFCYAKVLNH FT LHKKLKNMSKKSEASKKKTAQTVLVVVVVFGISWLPHHVINLWAEFGVFPLTP FT ASFLFRIAAHCLAYSNSSVNPIIYAFLSENFRKAYKQVFKCRTHSESPLNDTK FT ENRSRVDTPPSTNCTHV" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '-' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..100 FT /number=1 FT /note="FIRST EXON; p-value: 0.549." FT exon 101..215 FT /number=2 FT /note="INTERNAL EXON; p-value: 0.720." FT exon 216..319 FT /number=3 FT /note="INTERNAL EXON; p-value: 0.540." FT exon 320..1059 FT /number=4 FT /note="INTERNAL EXON; p-value: 0.790." FT exon 1060..1125 FT /number=5 FT /note="INTERNAL EXON; p-value: 0.714." FT exon 1126..1443 FT /number=6 FT /note="LAST EXON; p-value: 0.581." FT CONTIG join(NC_006583:5748273...5748174, 5744197...5744083, FT 5743394...5743291, 5743057...5742318, 5737945...5737880, FT 5731306...5730989) XX SQ Sequence 1443 BP; 281 A; 461 C; 387 G; 314 T; other; atgggccgcc tgtgccaaag tcatgaaatc ccagggtgtc tctgggtgga actcattcct 60 gctgctgaag tgaacctgaa ctatcgcaca gtaagggcag ctcagtttct tggcgtattc 120 acgttttaca acagggataa aatactaggc aagttctttc cacctcacaa atctgtcagt 180 acttctgctc atgtcactca gatgagaaac acaagcgcgc cgcctgtgcc ccgggaagcg 240 gctctgcatc agagcaacag gtgcggcccg aagccactcc cggaacgagg gaacggccgg 300 ccggcaggga cccgaaccgg accccgcgtc ctcggagcct tcttccacgg cgggcaccgt 360 cgccagcgcg cccgggccgc ttggggcatg gagctggccg ccggcaacct cagcgagggg 420 aatgcgagcg ggcccgagcc cccagccccg gagcccaggc cgctcttcgg cataggcatc 480 ggcgtcgaga acttcatcac tctggtgctg tttggcctga tcttcgcgtt cggggtgctg 540 ggcaacagtc tggtgatcac ggtgctggcg cgcagcaagc cgggcaagcc gcgcagcacc 600 accaacctgt tcatcctcaa cctgagcatc gccgacctgg cctacctgct cttctgcatc 660 cccttccagg ccacggtgta cgcgctgccc acctgggtgc tgggcgcctt catctgcagg 720 ttcatccact acttcttcac tgtctccatg ctggtcagca tcttcaccct ggccgcgatg 780 tcggtggacc gctacgtggc catcgtgcac tcccggcgct cctcctccct gcgggtgtcc 840 cgcaacgcgc tactgggcgt gggcttcatc tgggcgctgt ccatcgccat ggcctccccg 900 gtggcctacc accgccgcct cttccactgg gaagtccgaa accagacctt ctgctgggaa 960 gagtggccca accagggcca caagaaggcc tacgtggtgt gcacctttgt cttcggctac 1020 ctgttgccgc ttctgctcat atgcttctgc tacgccaagg tgcttaacca tttgcataaa 1080 aagttgaaga acatgtcaaa gaagtctgaa gcatcgaaga aaaagactgc acagacagtt 1140 ctggtggtgg ttgtggtttt tgggatatcc tggctgccgc accacgtcat caatctctgg 1200 gctgagtttg gggtttttcc gctgaccccc gcctccttcc tcttcagaat cgctgcccac 1260 tgcctggcgt acagtaattc ctcggtgaat cccatcatat atgcttttct ctccgagaat 1320 tttaggaagg cttataagca agtgttcaag tgccgcactc acagtgaatc gcctcttaat 1380 gatactaaag agaacagaag tcgagtagac accccgccat ccaccaactg cactcacgtg 1440 tga 1443 // ID NC006583_118; SV 1; special; RNA; MAM; 330 BP. XX AC NC006583_118; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_118; NC006583_118. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..330 FT /organism="Canis familiaris" FT CDS 1..330 FT /protein_id="NC006583_118" FT /db_xref="trGEN:NC006583_118" FT /translation="MMSLLGVCERPGFHPLSAARRLRPHNPSPVTYLNSERLL FT FLLLWPMPYLHGSKSLLCCVAVSDILGPKLKLVNKPSCVCIGVGSLVVSRIRD FT LRHNSSEPSPKDRDLLM" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '+' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..151 FT /number=1 FT /note="FIRST EXON; p-value: 0.663." FT exon 152..330 FT /number=2 FT /note="LAST EXON; p-value: 0.754." FT CONTIG join(NC_006583:5752050...5752200, FT 5754522...5754700) XX SQ Sequence 330 BP; 59 A; 102 C; 86 G; 83 T; other; atgatgtcac tactgggggt gtgtgagcgg ccgggcttcc accctctgag tgctgcccgg 60 cggctgcggc cacacaaccc gtcacccgtc acctacctca actcggagag gctcctcttc 120 ctactgctgt ggccaatgcc ttatcttcac gggtccaagt ccctgctctg ctgtgtcgct 180 gtgtcggata tacttggacc caagctcaag cttgtaaata aaccctcatg tgtttgcatc 240 ggtgtcggct ccttggtggt ttctcggatt cgcgatctta ggcacaacag ttcagaacca 300 tcccccaagg acagggacct gctgatgtga 330 // ID NC006583_119; SV 1; special; RNA; MAM; 171 BP. XX AC NC006583_119; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_119; NC006583_119. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..171 FT /organism="Canis familiaris" FT CDS 1..171 FT /protein_id="NC006583_119" FT /db_xref="trGEN:NC006583_119" FT /translation="MLTPGDKDGLAREPSGQIQERDTELKVLNHPNECSFTRS FT RGERGNEENEEYTYVRE" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '-' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..79 FT /number=1 FT /note="FIRST EXON; p-value: 0.638." FT exon 80..171 FT /number=2 FT /note="LAST EXON; p-value: 0.936." FT CONTIG join(NC_006583:5768224...5768146, FT 5762668...5762577) XX SQ Sequence 171 BP; 57 A; 32 C; 48 G; 34 T; other; atgttgacac ctggtgacaa ggacggatta gccagggaac catctgggca gatccaggag 60 agggacacag agctcaaagt tttaaatcat cccaatgaat gttcttttac aagatctcgt 120 ggagaacgag gtaacgagga gaacgaggag tacacctatg tcagagaatg a 171 // ID NC006583_120; SV 1; special; RNA; MAM; 726 BP. XX AC NC006583_120; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_120; NC006583_120. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..726 FT /organism="Canis familiaris" FT CDS 1..726 FT /protein_id="NC006583_120" FT /db_xref="trGEN:NC006583_120" FT /translation="MDFLQRVGIHYLKICVKSEKTLNSQGNIEKEIQSQGHHN FT ARFQVVLQSCDHQDSVVLSQKETHRSMEQNKEPRNEPSTLWSTNIRQNRKDYP FT LEKRTVSSINVAGKIGQSLDHSLTPYTKINSKWMKELHVRQESIQILEKNTGN FT TLFELGHSNFLQDTSMKARETKAKMNYCDLIKIKNFCTAKEAVNKAKRQPTEW FT EKTFSNDISDPYQTVSKIYKEDLVSKIYKELIKLNCKETNNPS" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '+' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..726 FT /number=1 FT /note="SINGLE EXON; p-value: 0.909." FT CONTIG join(NC_006583:5778466...5779191 FT join(NC_006583:5778466...5779191) XX SQ Sequence 726 BP; 303 A; 139 C; 128 G; 156 T; other; atggactttc ttcagagagt tggaatacat tatcttaaga tttgtgtgaa atcagaaaag 60 accctgaata gccaggggaa tattgaaaaa gaaatccaga gccagggaca tcacaatgcc 120 agatttcagg ttgtactaca aagctgtgat catcaagaca gtgtggtact gtcacaaaaa 180 gaaacacata gatcaatgga acagaataaa gagcccagaa atgagccctc aactttatgg 240 tcaactaata ttcgacaaaa caggaaagac tatccactgg aaaaaaggac agtctcttca 300 ataaatgttg ctgggaaaat tggacagtca ctggaccatt ctcttacacc atacacaaag 360 ataaactcaa aatggatgaa agagctacat gtgagacaag aatccatcca aattttagag 420 aaaaacacag gcaacaccct ttttgaactt ggccacagca acttcttgca agatacatct 480 atgaaggcaa gggaaacaaa agcaaaaatg aactactgtg atttaatcaa gataaaaaac 540 ttctgcacag cgaaagaagc agtcaacaaa gctaaaagac aacctacaga atgggagaag 600 acattttcaa atgacatatc agatccctat caaacagtat ccaagatcta taaagaagat 660 ctagtatcca agatctataa agaacttatt aaactcaact gcaaagaaac aaacaatcca 720 tcatga 726 // ID NC006583_121; SV 1; special; RNA; MAM; 252 BP. XX AC NC006583_121; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_121; NC006583_121. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..252 FT /organism="Canis familiaris" FT CDS 1..252 FT /protein_id="NC006583_121" FT /db_xref="trGEN:NC006583_121" FT /translation="MPACTCSRLWESQQRDGEELPMLWNPQRGFLTAHYLQGN FT QKGQPPLRSAQGAAVIVATVGGALRSPARLSVLVVMSGHCFAFN" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '+' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..45 FT /number=1 FT /note="FIRST EXON; p-value: 0.458." FT exon 46..235 FT /number=2 FT /note="INTERNAL EXON; p-value: 0.789." FT exon 236..252 FT /number=3 FT /note="LAST EXON; p-value: 0.075." FT CONTIG join(NC_006583:5781479...5781523, 5783693...5783882, FT 5785057...5785073) XX SQ Sequence 252 BP; 48 A; 73 C; 73 G; 58 T; other; atgcctgcct gcacctgcag ccggctgtgg gaaagccagc agagggatgg ggaggaattg 60 cccatgctgt ggaatcccca gcgaggtttt ctgactgccc attacctcca gggcaaccag 120 aaaggtcagc cacctctaag gtctgcacag ggtgctgctg tcattgtagc aaccgttggt 180 ggggccctcc gatccccagc ccgtctctct gtgctggtgg tcatgtcagg acactgtttt 240 gccttcaatt aa 252 // ID NC006583_122; SV 1; special; RNA; MAM; 1077 BP. XX AC NC006583_122; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_122; NC006583_122. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..1077 FT /organism="Canis familiaris" FT CDS 1..1077 FT /protein_id="NC006583_122" FT /db_xref="trGEN:NC006583_122" FT /translation="MTRCSGNQTRKGSECLECAQTPTPPWSVLGPEGPPRDAF FT SKTHPSPDVESQLEGEEQRREDQGFLKVGLKLASQLVDQAPHRKSMPQDPDYE FT DAQAKTRIREPAASSLRLLTSALGEAMNRVARSQTSCCLLTGTRSPCCSSRKP FT FVRSCQTESRAPDSAGSILGVSPHVGAASLPRDILRCLQTPMVATTGVCALTY FT NGWRPGVQDSPTAENSQPQMSVAPRRSPTSWDTPVITIIPNLDQSSPLDVESC FT PWIPGPRPFSRLPNWLRGDEWGMGVFDEKGQVTGVVTWVLGGGDDISFTGCCQ FT QCMWYCPCWHTGSTLKVNSAVTDTRSMEGGNPGRSWAPAEETDTGREVVSCLR FT K" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '+' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..61 FT /number=1 FT /note="FIRST EXON; p-value: 0.940." FT exon 62..186 FT /number=2 FT /note="INTERNAL EXON; p-value: 0.731." FT exon 187..306 FT /number=3 FT /note="INTERNAL EXON; p-value: 0.827." FT exon 307..669 FT /number=4 FT /note="INTERNAL EXON; p-value: 0.356." FT exon 670..875 FT /number=5 FT /note="INTERNAL EXON; p-value: 0.361." FT exon 876..1077 FT /number=6 FT /note="LAST EXON; p-value: 0.775." FT CONTIG join(NC_006583:5794836...5794896, 5795471...5795595, FT 5800894...5801013, 5802062...5802424, 5805927...5806132, FT 5808094...5808295) XX SQ Sequence 1077 BP; 242 A; 297 C; 340 G; 198 T; other; atgacccgat gcagcggcaa ccagacccgc aaaggcagcg agtgcttgga atgtgcccag 60 acgcctacgc ccccatggag cgtgctgggc ccagaaggtc ctccgaggga cgcgttctct 120 aaaactcatc cgtctccaga tgtggaatct cagctggaag gggaggagca gaggcgggag 180 gaccagggct tcctcaaagt gggcttgaag ctggcatctc agcttgttga ccaagcaccc 240 caccgaaagt ccatgcccca ggatcccgat tatgaggacg cacaagccaa gacgagaatt 300 agagagcccg cagcttcatc cctgcggctt ctgacctctg cgcttggcga agcaatgaat 360 cgggttgctc ggtcacagac cagctgctgc ttactcaccg ggaccaggtc accttgctgt 420 tcatctagaa aaccctttgt acgaagctgc cagactgaga gccgggctcc ggactctgcg 480 ggaagcatcc tgggggtatc tcctcacgtg ggggcagctt ccctgccaag ggacattctg 540 cgatgtctgc agacacccat ggtggccacg actggtgtgt gtgctctgac ctacaacgga 600 tggaggccag gggtgcagga cagccctaca gcagagaata gtcagcctca aatgtccgta 660 gcacccagga ggagccctac aagctgggac acacctgtga ttaccatcat cccaaattta 720 gaccagagca gcccattgga tgttgagtca tgcccctgga ttccaggtcc caggccattt 780 tcacggctgc ctaattggct ccgaggtgac gagtggggaa tgggggtgtt tgatgagaag 840 ggtcaggtca cgggggtagt gacgtgggtg ttaggtggag gtgacgacat ctccttcacg 900 gggtgctgcc agcaatgcat gtggtactgc ccgtgctggc acacggggag cacactcaag 960 gtgaacagtg ccgttacaga taccaggagc atggaaggcg ggaaccccgg ccggtcatgg 1020 gctcccgcgg aggagacaga caccggacgg gaggtggtca gctgcctgag gaagtaa 1077 // ID NC006583_123; SV 1; special; RNA; MAM; 249 BP. XX AC NC006583_123; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_123; NC006583_123. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..249 FT /organism="Canis familiaris" FT CDS 1..249 FT /protein_id="NC006583_123" FT /db_xref="trGEN:NC006583_123" FT /translation="MVSNEDENSQRVYKMDMTEAIYDGIRVTIGEKPPYPPLL FT ELGQNLWTGQNNNCFKKLLRKQQDNRHPDPRLLAVDFLKTRVN" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '+' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..249 FT /number=1 FT /note="SINGLE EXON; p-value: 0.905." FT CONTIG join(NC_006583:5812012...5812260 FT join(NC_006583:5812012...5812260) XX SQ Sequence 249 BP; 86 A; 48 C; 58 G; 57 T; other; atggtcagca atgaagatga aaattcacag cgagtgtaca aaatggacat gactgaagcc 60 atttacgatg gaatcagggt gaccattgga gagaaaccac cttatccacc tttgcttgaa 120 ctgggccaaa atctctggac tgggcaaaat aacaactgct ttaagaaatt gttgagaaag 180 caacaggaca acagacatcc tgatcctaga ctgttggctg tggactttct gaagacaaga 240 gttaactga 249 // ID NC006583_124; SV 1; special; RNA; MAM; 1497 BP. XX AC NC006583_124; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_124; NC006583_124. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..1497 FT /organism="Canis familiaris" FT CDS 1..1497 FT /protein_id="NC006583_124" FT /db_xref="trGEN:NC006583_124" FT /translation="MKVVHVPGHKAIPNNMQELVSNQTHPPQGYRIRNQQQKG FT SHNPPTRIWKSITRLTSCKQVFFAPYRFVFTRASQAPGVMLRARCTPRGCRTS FT SIHVEANGGYLSFLMAEYYSIVYINHIFFIHSSFDGHRGSFNNLAIVDIAAIN FT IGVQVSQRFIASVSLGELEQIILRFVWNQKIPRIARGILKKKTISGGITMPDF FT RLYYKAVVIKTVWYWHKNRHIDQWNRIENPEVDPQLYGQLIFDKGGKTIHWKK FT DSLFNKWCWENWTSTCRRMKLDHSLAPYTKINSKWMKDLNVRQDSIKILEENT FT GNTLFQLGHSNFLQDTSTKAKETKAKMNYWDFIKIRSFCTAKDTVNKTQRQPT FT EWEKIFANDVSGKGLVSKIYKELIKLNSKETNNPIMKWAKDMNRNLTEEDIDM FT VNMHMRKCSASLAIREIQIKTTMRYHLTPIIVDHELSQRNQTEAPGSHLKIEM FT LQIRSMRCRKHLRRDIHAEDEVVLPKPTGGPCHSP" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '+' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..157 FT /number=1 FT /note="FIRST EXON; p-value: 0.386." FT exon 158..275 FT /number=2 FT /note="INTERNAL EXON; p-value: 0.055." FT exon 276..482 FT /number=3 FT /note="INTERNAL EXON; p-value: 0.095." FT exon 483..1317 FT /number=4 FT /note="INTERNAL EXON; p-value: 0.029." FT exon 1318..1497 FT /number=5 FT /note="LAST EXON; p-value: 0.467." FT CONTIG join(NC_006583:5819831...5819987, 5821158...5821275, FT 5823425...5823631, 5824346...5825180, 5831692...5831871) XX SQ Sequence 1497 BP; 526 A; 344 C; 307 G; 320 T; other; atgaaagttg tccacgtacc aggtcacaaa gcaattccca acaatatgca agaattggtg 60 tcaaaccaaa cacatccacc acaaggctat cgcatcagaa atcagcaaca gaaaggtagc 120 cacaacccgc ccacacgcat ctggaagtca atcacacgtc tcaccagttg caagcaagtg 180 ttttttgctc cataccggtt tgtgttcacc agagctagcc aggcgccggg tgtgatgctc 240 cgtgcccgct gcactccccg gggctgccga acaagttcca tccacgttga agcaaatggt 300 gggtatttgt catttctaat ggctgagtat tattccattg tgtacataaa ccacatcttc 360 tttatccatt catctttcga tggacaccga ggctccttca acaatttggc tattgtggac 420 attgctgcta taaacattgg ggtgcaggtt tcccagcgtt tcattgcatc tgtatctttg 480 ggagagttag aacaaattat tttacgattt gtgtggaatc agaaaatacc ccgaatagcc 540 aggggaattt taaaaaagaa aaccatatct gggggcatca caatgccaga tttcaggttg 600 tactacaaag ctgtggtcat caagacagtg tggtactggc acaaaaacag acacatagat 660 caatggaaca gaatagagaa cccagaagtg gaccctcaac tttatggtca actaatattc 720 gataaaggag gaaagactat ccattggaag aaagacagtc tcttcaataa atggtgctgg 780 gaaaattgga catccacatg cagaagaatg aaactagacc actcccttgc accatacaca 840 aagataaact caaaatggat gaaagatcta aatgtgagac aagattccat caaaatccta 900 gaggagaaca caggcaacac cctttttcaa ctcggccaca gtaacttctt gcaagataca 960 tccacgaagg caaaagaaac aaaagcaaaa atgaactatt gggacttcat caagataaga 1020 agcttctgca cagcaaagga tacagtcaac aaaactcaaa gacaacctac agaatgggag 1080 aagatatttg caaatgacgt atcaggtaaa gggctagtat ccaagatcta taaagaactt 1140 attaaactca acagcaaaga aacaaacaat ccaatcatga aatgggcaaa agacatgaac 1200 agaaatctca cagaggaaga catagacatg gtcaacatgc acatgagaaa atgctctgca 1260 tcacttgcca tcagggaaat acaaatcaaa accacaatga gataccacct cacaccaatc 1320 atcgtggatc atgagctcag ccagcgcaac cagacagaag ccccaggctc tcatttgaag 1380 attgagatgc tccaaataag gagcatgaga tgccgaaagc acttgagaag agacatccat 1440 gcagaggatg aggtcgtgct gccaaaaccc acagggggcc cttgtcacag cccctga 1497 // ID NC006583_125; SV 1; special; RNA; MAM; 69 BP. XX AC NC006583_125; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_125; NC006583_125. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..69 FT /organism="Canis familiaris" FT CDS 1..69 FT /protein_id="NC006583_125" FT /db_xref="trGEN:NC006583_125" FT /translation="MADSRVKIFNVIPRISTSSQCR FT " FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '-' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..40 FT /number=1 FT /note="FIRST EXON; p-value: 0.183." FT exon 41..69 FT /number=2 FT /note="LAST EXON; p-value: 0.106." FT CONTIG join(NC_006583:5841909...5841870, FT 5838352...5838324) XX SQ Sequence 69 BP; 15 A; 24 C; 15 G; 15 T; other; atggcggatt cacgcgtgaa gatcttcaac gtcattcccc ggatctccac ctccagccaa 60 tgccgctga 69 // ID NC006583_126; SV 1; special; RNA; MAM; 2112 BP. XX AC NC006583_126; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_126; NC006583_126. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..2112 FT /organism="Canis familiaris" FT CDS 1..2112 FT /protein_id="NC006583_126" FT /db_xref="trGEN:NC006583_126" FT /translation="MALRSSRLALWAHARRVSCTRFVRESPTSLSVCRVDGQL FT VLLSLRPHLLAPHAQLDPAEPVPAAWMMTAPIDEYMFLVTLYFSSFSPGQYVH FT CAFKLLTSSAVQDGKPCRKAGVKCGEEQQGKGNHSVPLILYLNFTLCVSQLKT FT MVLAQGAALRVEDLHRHLYMDVLPYAIHGTDLAIAVTPPEPWSVNFSHTTGHL FT IVVTMGSSVELCVQVLRSPEVWTASPPEVKVEMGPWQGVPTRQHQGSASLSRV FT CIGNPEPPLEGEHAPSPPGRFRPREEQPKHLPLTESLSFDGCALCEMAFKFDF FT GFTSGGERNLGYGRAESYSCTISDSAGGTPPGGVDRRGVRQLAREASEDNEVF FT GECEGVASGDNPVQLHSRGEGCNFLITRLVYQSVPSIDNADAAEPWGRFAWLP FT RKEENTVAQGTTYRQSFGEPGYFVVVRWDPHLQSQSRRDECPAHQVSRGDERI FT HPRLMSKPTYVHLEGTLSLRGDRQREVCVHPSKDAAVFSPFQPLLKTFMERMA FT QGMHSLPKAPAPLPQSVAPVGARSLYSSPYTPLPPSPTLSLFLEHKAFAQLCP FT PSGTLFPNIWVTSSPPLPNIVVTPEETSPAGSSPSSPPPAYPETTNPHSVCGF FT ADSTPVALVRGFSHLAQCEVFAAHSLGGGGGGGGGGGGGVQVLPSHGQTPTVM FT ALLRLRLGHSRLAAKPRFHLRRNFHAAP" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '+' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..94 FT /number=1 FT /note="FIRST EXON; p-value: 0.129." FT exon 95..114 FT /number=2 FT /note="INTERNAL EXON; p-value: 0.013." FT exon 115..288 FT /number=3 FT /note="INTERNAL EXON; p-value: 0.071." FT exon 289..364 FT /number=4 FT /note="INTERNAL EXON; p-value: 0.031." FT exon 365..567 FT /number=5 FT /note="INTERNAL EXON; p-value: 0.025." FT exon 568..744 FT /number=6 FT /note="INTERNAL EXON; p-value: 0.817." FT exon 745..849 FT /number=7 FT /note="INTERNAL EXON; p-value: 0.351." FT exon 850..987 FT /number=8 FT /note="INTERNAL EXON; p-value: 0.596." FT exon 988..1072 FT /number=9 FT /note="INTERNAL EXON; p-value: 0.979." FT exon 1073..1210 FT /number=10 FT /note="INTERNAL EXON; p-value: 0.716." FT exon 1211..1310 FT /number=11 FT /note="INTERNAL EXON; p-value: 0.430." FT exon 1311..1365 FT /number=12 FT /note="INTERNAL EXON; p-value: 0.409." FT exon 1366..1511 FT /number=13 FT /note="INTERNAL EXON; p-value: 0.717." FT exon 1512..1761 FT /number=14 FT /note="INTERNAL EXON; p-value: 0.114." FT exon 1762..1925 FT /number=15 FT /note="INTERNAL EXON; p-value: 0.659." FT exon 1926..2039 FT /number=16 FT /note="INTERNAL EXON; p-value: 0.419." FT exon 2040..2112 FT /number=17 FT /note="LAST EXON; p-value: 0.184." FT CONTIG join(NC_006583:5852314...5852407, 5852874...5852893, FT 5856793...5856966, 5861193...5861268, 5861890...5862092, FT 5862460...5862636, 5867060...5867164, 5868302...5868439, FT 5885380...5885464, 5885476...5885613, 5888655...5888754, FT 5889017...5889071, 5889702...5889847, 5891705...5891954, FT 5898099...5898262, 5898406...5898519, 5899445...5899517) XX SQ Sequence 2112 BP; 409 A; 642 C; 603 G; 458 T; other; atggcgcttc gctccagccg cctggccctg tgggcgcacg ctcggcgggt gtcctgcaca 60 cgctttgtcc gcgagtcccc gacgtccctt tcagtgtgcc gtgttgacgg acagctggtt 120 cttctcagcc tgcggcccca cctgctggct ccacatgcac agttagaccc agcagagcca 180 gtgcccgccg cttggatgat gacggccccg atcgacgagt atatgttcct cgtcaccttg 240 tatttctcat ctttctctcc tggccagtat gtacattgtg cgtttaagct tctgacgagc 300 tcggcggtcc aggatgggaa accatgcagg aaagcgggag ttaagtgcgg agaagagcaa 360 caagggaagg gaaatcactc tgtgcctttg atactttacc tcaacttcac cttatgtgtg 420 tcccagctca agacgatggt gctggcccag ggtgctgcac tgagggtgga ggacctccac 480 cgccacctgt acatggatgt gcttccatat gcaattcatg gcactgactt ggccatagcc 540 gtgacacccc ctgaaccgtg gtctgtgaac ttcagccata ccaccggtca cctcatcgtc 600 gtcacaatgg gcagtagcgt tgagctgtgt gttcaggtgc tgcgaagccc agaagtgtgg 660 acggcatctc caccagaagt gaaagtggag atgggcccct ggcagggagt tcccacccgt 720 cagcaccagg ggagtgcaag tcttagtcgt gtttgcattg ggaacccaga gccgcccctg 780 gagggggagc acgctcccag cccgccgggc aggttccggc cccgcgagga acagccgaag 840 cacctgccgt tgacagagtc tttgagcttt gacgggtgtg ctttatgtga aatggctttc 900 aagtttgatt ttggatttac ctctggcgga gaacggaatc tcgggtatgg ccgagcagag 960 agttattcat gtaccatcag tgactcggct ggagggactc ccccaggagg agtggaccgg 1020 aggggcgtcc gccagctggc ccgggaggcc tcggaagaca acgaggtgtt cggggaatgc 1080 gagggcgtag cttcaggcga caaccctgtg cagctgcact cacgtgggga aggttgtaat 1140 tttttaatta cgcgactcgt ctatcagtct gttcccagca tcgacaacgc agacgccgca 1200 gaaccgtggg gacggtttgc ctggttaccc agaaaggaag aaaacacggt agcccaggga 1260 accacgtatc gtcagagctt tggggaaccg ggttattttg tggtagtccg atgggaccca 1320 catctccaga gtcagagcag aagagatgag tgccccgcac atcaggtcag caggggagat 1380 gagagaatcc acccacggct catgagcaag ccgacctacg tccacctgga gggcaccctg 1440 tccctccgcg gtgaccgtca gcgggaagtc tgtgtgcatc cctcaaagga tgcagctgtg 1500 tttagcccgt tccagcctct tctcaagacc ttcatggagc gcatggccca gggcatgcac 1560 tccctgccca aagccccagc acccttacca cagtctgtgg cccccgtggg tgccaggagc 1620 ctctacagct ccccctacac tcccctgcct ccctcaccca ccttatctct gttcctggag 1680 cacaaggcct ttgcacagct gtgccctccc tctggaacac tcttccccaa catctgggtg 1740 acgagctccc caccccttcc gaacattgtt gtcaccccag aggaaacatc tccggctggc 1800 agctctccat cctccccgcc acctgcatat cctgaaacca ctaatccaca ttctgtatgt 1860 ggctttgccg actcgacacc cgtggccctt gtaaggggct tctcacacct cgcacagtgt 1920 gaagtctttg ctgctcacag tctcggtggc ggtggcggcg gcggtggtgg tggtggtggt 1980 ggggtgcagg tgctcccttc tcatgggcag acgcctactg tgatggcttt acttcgtcta 2040 cgtctgggcc actccaggct ggccgccaag ccacgcttcc acttacggcg gaattttcac 2100 gcagcgcctt ag 2112 // ID NC006583_127; SV 1; special; RNA; MAM; 456 BP. XX AC NC006583_127; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_127; NC006583_127. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..456 FT /organism="Canis familiaris" FT CDS 1..456 FT /protein_id="NC006583_127" FT /db_xref="trGEN:NC006583_127" FT /translation="MSCAWACVLITSALTLHAVRTPCPPQDVHPFSGCWWPGL FT IWPRRLYLAGHPGSRSGGRVLHVITLMTCLRPPGGKKPILLRTQGHTDPPGRP FT VNTAQRAGQGPLRSPTTDAPRLHSENRQQNPLVTVLRVAEPPCPPTCSLVSPG FT SPAGSP" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '-' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..303 FT /number=1 FT /note="FIRST EXON; p-value: 0.514." FT exon 304..456 FT /number=2 FT /note="LAST EXON; p-value: 0.454." FT CONTIG join(NC_006583:5901330...5901028, FT 5900825...5900673) XX SQ Sequence 456 BP; 79 A; 172 C; 125 G; 80 T; other; atgtcatgtg catgggcctg cgtcctgatc acctctgccc tcaccctcca tgccgtgcga 60 accccctgcc ccccacagga tgtgcatccg ttctctggat gctggtggcc tgggctgatc 120 tggccacgac ggctgtacct ggcaggccac ccaggttcac gttcaggcgg cagagtgctc 180 catgtaataa ccctgatgac ctgcttgcga ccgcccgggg gcaagaagcc tattctgctg 240 aggacccagg gccacacgga cccaccaggg cggccagtga acacagcaca gcgggcaggg 300 cagggcccct tgcgctcacc caccactgac gcaccaagac tgcactccga gaaccgccag 360 caaaaccctc ttgtgaccgt cctgcgtgtg gcagagccgc cctgtcctcc cacgtgctcc 420 cttgtctccc cgggctcccc tgctggcagc ccatga 456 // ID NC006583_128; SV 1; special; RNA; MAM; 4125 BP. XX AC NC006583_128; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_128; NC006583_128. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..4125 FT /organism="Canis familiaris" FT CDS 1..4125 FT /protein_id="NC006583_128" FT /db_xref="trGEN:NC006583_128" FT /translation="MALSVKPLHVGLMRPLPRLLPPQTFIRMLERCWPTRGAL FT RSESPQGLSPHRLRAPPQFLVSGSGTEPENLHFWQVPSEKQLCVPVMPLPWEK FT SRSLSGPGHGRYRATVTMGRSCSWHRTYVETVFGKRASDNVGVYEVQTPRGAR FT PSPRGWFTAHTGCLSRDLLLLWEGSTALSASQDLPDSRERRGAPARSPMGREL FT RCARPCLTTSTCPALRAPPFPYTVVYTVGPRQYSEAVILGVSYRALEIVSGSV FT VYEAHHKEVAWMEWPSRHRRVSDRTVVPGACADSLWGEVEAKLGWTPQTHGRA FT VPLTTLELRPRSSAQVPSTGLRVRTWTRGAGKPVLGVHGTEARTGALDCARPS FT SSREADVEQNNGTPSQDTAVTDSKRTADPKNAWQDANPADPGGRPHLIRLFSR FT DAPGREDNTFKDRPSESDELQTIQEDSAATPEGLDVMASQKRPSQRHGSKYLA FT SASAMDHARHGFLPRHRDTGILDSLGRFFGGDRGVPKRGSGKNLELLLIVKSL FT SDLCLNKGSFATLELGDMAAQELGMSQVLVVPWLKQRRSPVPSHARSQPGLCN FT MYQRGPPPGTLLPAGSSRCYVHGEGTFANSSGAAPEGRQARDKMNRMGPAVGS FT GSGPAHRASGTLLVPEAPEHGVGGSRGIDLPLKAVPDIHWPPLIELNCHMTCV FT YGKCSSSDGHGHRLPGDRGRRMQAPESLTWEDAEGPPAVPEDDGQPDFLITAQ FT LWLCLDVSLAAAHLVGALGLAVETQSAPSSPGNIRFSLYTGTFLFLARHTCTS FT QWKGRPRDSPGGELEQGFSFSSQPPHTPRHPTASLRAVEGEWGSGCLFCLVSE FT AMETWPGLRRPGMQYRSRKDGHHAARTAHYGSLPQKSQHGRPQDENPVVHFFK FT NIVTPRTPPPSQGKGAEGQKPGFGYGGRAPAHKGLKGTDAQGTLSKIFKLGFL FT HQKGPVGTRCVPLAWESQVNPLKTWETHRAEVLVRPLTLPWADWLWGSDSTCR FT LLRQQSGDATDAKDSRLRDGLSLSITEPPPRTCAPPPRPPALLLTSNRVCAGH FT MSIRRVKTPEPREEEIVVPGHPWLDAEARLVAAEPCPQLLNITAFDVNTAPYL FT PTPGSGAPRPTGGFRPRASMEETQTGYSTATLSLETTRPRGLSPRQRSPGPTR FT ASVLRPASLSRIPRLRRRCRGPAADTETPGGRQRHRGLSSKQLLTGAKEALRN FT YICHAQKATTRRDSEILCVVAFGDKSSVSKTINQIVVLSGFSWLPGSRQQLGA FT GRTLAPQDGEPRPHLPRDPLPGKPGACAGRTRTPLRGPAPACVPSRGPPARPP FT GDSSPPAVVFRKVSDGHSGPREPGAATLSRRGLYEGETVHTSTNTDGVSGEEL FT PKALLVPGNS" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '+' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..69 FT /number=1 FT /note="FIRST EXON; p-value: 0.017." FT exon 70..230 FT /number=2 FT /note="INTERNAL EXON; p-value: 0.025." FT exon 231..367 FT /number=3 FT /note="INTERNAL EXON; p-value: 0.014." FT exon 368..514 FT /number=4 FT /note="INTERNAL EXON; p-value: 0.034." FT exon 515..634 FT /number=5 FT /note="INTERNAL EXON; p-value: 0.014." FT exon 635..789 FT /number=6 FT /note="INTERNAL EXON; p-value: 0.038." FT exon 790..1078 FT /number=7 FT /note="INTERNAL EXON; p-value: 0.065." FT exon 1079..1515 FT /number=8 FT /note="INTERNAL EXON; p-value: 0.553." FT exon 1516..1638 FT /number=9 FT /note="INTERNAL EXON; p-value: 0.169." FT exon 1639..1716 FT /number=10 FT /note="INTERNAL EXON; p-value: 0.235." FT exon 1717..1836 FT /number=11 FT /note="INTERNAL EXON; p-value: 0.193." FT exon 1837..2045 FT /number=12 FT /note="INTERNAL EXON; p-value: 0.165." FT exon 2046..2164 FT /number=13 FT /note="INTERNAL EXON; p-value: 0.587." FT exon 2165..2281 FT /number=14 FT /note="INTERNAL EXON; p-value: 0.310." FT exon 2282..2352 FT /number=15 FT /note="INTERNAL EXON; p-value: 0.105." FT exon 2353..2559 FT /number=16 FT /note="INTERNAL EXON; p-value: 0.233." FT exon 2560..2667 FT /number=17 FT /note="INTERNAL EXON; p-value: 0.752." FT exon 2668..2703 FT /number=18 FT /note="INTERNAL EXON; p-value: 0.830." FT exon 2704..2811 FT /number=19 FT /note="INTERNAL EXON; p-value: 0.928." FT exon 2812..2874 FT /number=20 FT /note="INTERNAL EXON; p-value: 0.385." FT exon 2875..3060 FT /number=21 FT /note="INTERNAL EXON; p-value: 0.255." FT exon 3061..3173 FT /number=22 FT /note="INTERNAL EXON; p-value: 0.004." FT exon 3174..3304 FT /number=23 FT /note="INTERNAL EXON; p-value: 0.629." FT exon 3305..3539 FT /number=24 FT /note="INTERNAL EXON; p-value: 0.310." FT exon 3540..3573 FT /number=25 FT /note="INTERNAL EXON; p-value: 0.464." FT exon 3574..3768 FT /number=26 FT /note="INTERNAL EXON; p-value: 0.662." FT exon 3769..3948 FT /number=27 FT /note="INTERNAL EXON; p-value: 0.176." FT exon 3949..4125 FT /number=28 FT /note="LAST EXON; p-value: 0.124." FT CONTIG join(NC_006583:5906110...5906178, 5907415...5907575, FT 5909531...5909667, 5909704...5909850, 5912221...5912340, FT 5913020...5913174, 5916909...5917197, 5921005...5921441, FT 5922461...5922583, 5928529...5928606, 5928653...5928772, FT 5928834...5929042, 5929244...5929362, 5931296...5931412, FT 5934268...5934338, 5937578...5937784, 5942113...5942220, FT 5944355...5944390, 5947876...5947983, 5950820...5950882, FT 5951649...5951834, 5952647...5952759, 5952825...5952955, FT 5953002...5953236, 5953329...5953362, 5954615...5954809, FT 5955854...5956033, 5956716...5956892) XX SQ Sequence 4125 BP; 803 A; 1327 C; 1273 G; 722 T; other; atggccctct cagtgaagcc tctgcacgtc ggcctgatgc gtcccctgcc ccgattgctg 60 cccccacaga cattcatccg tatgctggag cggtgctggc ccactcgagg tgccctgcgg 120 tcagagtccc cgcagggctt gtcaccacac agactgaggg ccccacccca gtttctcgtc 180 agcgggtctg gcacggagcc agagaatttg cacttctggc aagttcccag tgaaaagcag 240 ctctgtgttc ctgtgatgcc acttccttgg gagaaatctc gtagcctctc cgggcctggt 300 catggccggt acagagctac cgtgacgatg ggcagaagct gctcatggca caggacctac 360 gtggaaactg tgtttgggaa gcgggcttct gacaacgtgg gtgtctacga agtgcagact 420 cccaggggag cccggcccag ccctcgcggg tggttcaccg cacacacagg ctgcctgtcc 480 cgtgacctgc tcctgctgtg ggagggctcg acggccctgt ccgcatctca agatcttcct 540 gactctagag aacggcgcgg ggctccggct cgctcgccca tgggacggga gctgcggtgt 600 gcacggcctt gcctgaccac gtccacctgt cccgctctca gagccccacc atttccttat 660 acagtcgtct acaccgtggg ccctagacaa tattcagagg cagtgattct gggggtctcc 720 tatagggcct tggagattgt gtccgggtct gtggtatatg aggcccatca caaggaagtg 780 gcatggatgg aatggcccag ccgacatcgg cgtgtcagtg atcggacggt tgtgccgggc 840 gcctgtgcag actcactgtg gggcgaggta gaggccaagc tcggctggac ccctcagact 900 cacggccgcg ctgtgccgct gaccaccctg gagctgcgtc ccagaagctc agcgcaggtg 960 cccagcacag gcctgcgggt taggacatgg accagggggg ccggcaagcc cgtcctgggt 1020 gtgcatggca ctgaggcccg gactggggcc ctggactgtg cccgcccttc cagcagcagg 1080 gaggcagatg tggagcagaa caatgggacc ccctctcagg acacagcggt gacagactcc 1140 aagcgcacag cggacccaaa gaatgcctgg caggacgcca acccagctga cccagggggc 1200 cgcccccact tgatccgcct cttttcccga gatgccccgg ggagggagga caacaccttc 1260 aaagacaggc cctcggagtc agacgagctc cagaccatcc aagaggacag cgcagccact 1320 cccgagggcc tggatgtgat ggcgtcacag aaaagaccct cccagaggca cggatccaag 1380 tacctggcct cagcaagcgc catggatcac gccaggcatg gcttcctccc gaggcacaga 1440 gacacgggca tccttgactc cctcgggcgc ttctttggcg gtgacagggg tgtgcccaag 1500 cggggctcag gcaagaattt agaattactg ctgattgtga aatcgttgag cgatttgtgt 1560 ttaaacaaag gcagttttgc cacgttggaa ttaggggaca tggcggcaca ggagctgggg 1620 atgtcgcagg tgctggtcgt gccctggctc aagcagagaa ggagccctgt gccctctcat 1680 gcccgcagcc agcccgggct gtgcaacatg taccagcggg ggccaccccc gggcacgctc 1740 ctgcccgccg gcagcagcag gtgttacgtg catggggaag gcacatttgc caactcgagc 1800 ggggccgctc ctgaggggag acaggcaagg gacaagatga accgcatggg gccggctgtg 1860 gggtcaggca gtggaccggc ccacagggcc agcgggacct tgttggttcc agaggcaccg 1920 gagcatggag ttggtggcag ccgtggcatt gacctgccct tgaaggccgt gcctgacata 1980 cactggccac cgctcattga attaaattgt cacatgacat gtgtctatgg gaaatgtagc 2040 agcagtgacg gccacgggca taggcttcca ggtgaccgcg ggcgcaggat gcaggcacct 2100 gagagtttaa cctgggaaga tgcagaaggt ccaccagccg tgcctgaaga tgacgggcag 2160 cctgatttcc tcatcactgc ccagctctgg ctctgcctgg atgtgagtct ggcagccgca 2220 cacttggtgg gcgccctagg tctggccgtg gagacccaga gcgcaccaag ctccccgggg 2280 aacattcgtt tctccttata cacgggaaca tttttgtttc tagctcgtca cacatgcaca 2340 agtcaatgga agggcaggcc cagagactcc cctggaggag agctggagca gggcttcagc 2400 ttttcctcgc agccacccca cactcctcgc cacccaacag cgtcccttcg agctgttgag 2460 ggagagtggg ggtccgggtg tctcttctgc ctggtgtcag aggccatgga aacgtggcca 2520 ggcctgcgca ggccagggat gcagtacagg agccgaaagg atggacatca cgcagcgaga 2580 actgcccact atggctccct gccccagaag tcccagcatg gccggcccca agacgaaaac 2640 cccgtagtgc atttcttcaa gaacattgtg acaccacgca cacctcctcc atcgcaagga 2700 aagggagccg agggccagaa gccgggattt ggctacggag gccgcgctcc agctcacaag 2760 gggctcaagg gcaccgacgc ccagggcacg ctttccaaaa tcttcaaact gggcttcctg 2820 caccagaaag gcccggtggg aacccgctgt gtccctcttg cctgggagtc gcaggtcaac 2880 ccgctcaaaa cgtgggagac ccacagggca gaggtgctgg tgcgacccct gactctgccc 2940 tgggccgact ggctttgggg aagtgactcg acatgtcggc tcctccgaca gcaaagcggg 3000 gatgccacgg atgctaagga ttcccgcctc cgggacgggc tttctctttc gatcacggag 3060 ccgccgccgc gcacctgtgc tccccctcca cgaccgccag ctctgctctt gacttcaaat 3120 cgtgtctgtg caggacacat gtccattcgc agggtcaaga cccccgagcc cagggaggaa 3180 gagatagtcg ttccgggtca cccatggcta gacgctgaag cccgcctcgt ggccgcagaa 3240 ccctgtcctc agcttcttaa tatcaccgcc ttcgacgtta acaccgcccc gtacctcccc 3300 accccagggt caggcgcgcc caggcccacc ggcggtttcc ggccacgagc ttcgatggag 3360 gaaacacaga ccgggtattc cacagccacg ctgagcctgg agacgacgcg tccccggggc 3420 ctcagccccc ggcagcgcag ccccggcccg acgcgcgcct ccgtcctccg accggcttcg 3480 ctgagccgta tccctcggct tcgcaggcgc tgccgtggcc ccgccgcgga cacagagacg 3540 ccgggcggtc ggcagcggca cagggggctt tcgagtaaac agctgctgac gggagctaaa 3600 gaagctctga gaaactacat ctgccatgca cagaaagcca caacaaggag ggattcggaa 3660 attttgtgtg tcgttgcctt tggtgacaag agttccgttt caaaaacgat aaaccaaatc 3720 gttgttttgt ctggcttttc ctggctccct gggtctcggc agcagctggg tgcggggagg 3780 accctcgccc cccaggacgg cgagccccgc ccacacctgc cgcgcgaccc gctccccgga 3840 aagcccggcg cctgcgcggg gaggactcgc accccgctcc ggggcccagc tcccgcctgc 3900 gtccccagcc gcgggccccc agctcggcct cccggggact cttctcctcc cgccgtggtt 3960 ttcaggaaag tcagtgacgg gcacagcggg ccacgagagc cgggtgctgc caccctgagc 4020 agacgcggct tgtatgaagg ggagaccgtc cacacttcca ccaacacaga cggggtctct 4080 ggtgaagagt tacccaaagc cctccttgta cctggcaact cttag 4125 // ID NC006583_129; SV 1; special; RNA; MAM; 5559 BP. XX AC NC006583_129; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_129; NC006583_129. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..5559 FT /organism="Canis familiaris" FT CDS 1..5559 FT /protein_id="NC006583_129" FT /db_xref="trGEN:NC006583_129" FT /translation="MQPDIWNKNVTVSRHEHAGGENVMEISQNENSLISPEER FT VEGYQPRLNTRRGVRTRKWRELGAGRTQPAAAAVLLQSGRSVSRPDPTRPAAK FT EALQVPPCVFSPLRSDGGLSDIIRRSRCQRSFTSLHVPRRRPHRCDQCPQTFN FT VEFNLTLHKCTHNGEDPTCPVCNKKFSRVASLKAHIMLHEKEENLICSECGDE FT FTLQSQLAIHMEEHRQELAGNRVHTCKACRKEFETSSQLKEHMKTHYKIRVSS FT TRSYNRNIDRSGFTYSCPHCGKTFQKPSQLTRHIRIHTGERPFKCTECGKAFN FT QKGALQTHMIKHTGEKPHACAFCPAAFSQKGNLQSHVQRVHSEVKNGPTYNCT FT ECSCVFKSLGSLNTHISKMHMGGPQNPASSTETAHVLTATLFQTLPLQQTEVH FT VTSASSQQNSQAVTDVIQQLLELSEPGPAESSQPPQPGQQLSITVGINQDILQ FT QALENSGLSSIPAAAHAHDTSHARTSSAQSQNPDAPHTASEQTHPTDAEQEKE FT QESPEKLDKKEKKIIKKKSPFLPVPRACSWIVFAAPCSRVLTMSGPPLPTVPP FT PDLSPVGIWLSRLLVDPITSFEGSIREENGVRWHVCPYCTKEFRKPSDLVRHI FT RIHTHEKPFKCPQCFRAFAVKSTLTAHIKTHTGIKAFKCQYCLKSFSTSGSLK FT VHIRLHTGVRPFACPHCDKRFRTSGHRKTHIASHFKHTELRKMRHQRKPAKVR FT VGKASVPVPDIPLQEPILITDVDDSAVDQQSMHVSTHMQVEVESEELQQAAAA FT GTTDPEAMLELEPQQVVRTEDAGLDRFVAPPALQGHMDQFEEQAPAQQSFEQA FT GLSQGFTVTDTYSQPTPFAPVQQLQDSSTLESQALSTSFHQQNLLQVPSSDAM FT NVTTRLIQESSQEELELQSQRPQFLEDREDQSRRSYRCEYCNKGFKKSSHLKQ FT HVRSHTGEKPYKCKLCGRGFVSSGVLKSHEKTHTGVKAFSCSVCNASFTTNGS FT LTRHMATHMSMKPYKCPFCEQGFRTTVHCKKHMKRHQAVPSAVSATGEAEGGD FT VCMEEEEENSERSASRKARPEVITFTEEETAQLAKIRPQESATVSEQVLVQSA FT AEKDRISEMKDRQAELEAEPKYANCCSYCPKSFKKPSDLVRHVRIHTGEKPYK FT CDECGKSFTVKSTLDCHVKTHTGQKLFSCHVCSNAFSTKGSLKVHMRLHTGAK FT PFKCPHCELRFRTSGRRKTHMQFHYKPDPKKARKPVTRSSSEGLQPVNLLSPA FT STDPNVFIMNNSVLTGQFDQNVLPQGLVGQALLPASVSAGGDWTVSLTDGSLT FT TLEGIQLQLAANLVGPNVQISGIDASSINNITLQIDPSILQQTLQQGNLLTQP FT LPGEPGLASQNSSLQTQDSTVPASVVIQPIPGLSLQPTVTSASLTIGPLSEQD FT PVMTTSSSGTQDLSQVMTSQGLVSTSSGPHEITLTINNSSLSQVLAQAAGPTA FT ASSSGSPQEITLTISGQDLIQHNAHGSSEVNGSIRLSAPAATQSAGATLTISS FT DQLLSQGATLNSSELNATTGSLPSTTPMSPSAISAQNLVMSSSGVGGDASVTL FT TLADTQGLLSGGLDTVTLNIASQGQQFPALLTDPSLSGQGGAGSPQVILVSHT FT PQPSAAACEEIAYQVTDVSASLAPGGPPEKEGRLHQCLECGRTFASAALLLHH FT SKEVHGRERIHVCPVCRKAFKRATHLKEHMQTHQAGPSLSSQKPRVFKCDTCE FT KAFAKPSQLERHSRIHTGERPFHCTLCEKAFNQKSALQVHMKKHTGERPYKCD FT YCIMGFTQKSNMKLHMKRAHSYTGNLQEPVVQQEHGAEELSRTLHLEEVVQES FT ASEWQALANVF" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '-' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..79 FT /number=1 FT /note="FIRST EXON; p-value: 0.750." FT exon 80..148 FT /number=2 FT /note="INTERNAL EXON; p-value: 0.128." FT exon 149..302 FT /number=3 FT /note="INTERNAL EXON; p-value: 0.002." FT exon 303..399 FT /number=4 FT /note="INTERNAL EXON; p-value: 0.004." FT exon 400..564 FT /number=5 FT /note="INTERNAL EXON; p-value: 0.074." FT exon 565..743 FT /number=6 FT /note="INTERNAL EXON; p-value: 0.982." FT exon 744..868 FT /number=7 FT /note="INTERNAL EXON; p-value: 0.875." FT exon 869..1041 FT /number=8 FT /note="INTERNAL EXON; p-value: 0.700." FT exon 1042..1185 FT /number=9 FT /note="INTERNAL EXON; p-value: 0.513." FT exon 1186..1389 FT /number=10 FT /note="INTERNAL EXON; p-value: 0.905." FT exon 1390..1618 FT /number=11 FT /note="INTERNAL EXON; p-value: 0.978." FT exon 1619..1715 FT /number=12 FT /note="INTERNAL EXON; p-value: 0.290." FT exon 1716..1774 FT /number=13 FT /note="INTERNAL EXON; p-value: 0.042." FT exon 1775..2047 FT /number=14 FT /note="INTERNAL EXON; p-value: 0.325." FT exon 2048..2251 FT /number=15 FT /note="INTERNAL EXON; p-value: 0.145." FT exon 2252..2416 FT /number=16 FT /note="INTERNAL EXON; p-value: 0.172." FT exon 2417..2515 FT /number=17 FT /note="INTERNAL EXON; p-value: 0.953." FT exon 2516..2667 FT /number=18 FT /note="INTERNAL EXON; p-value: 0.956." FT exon 2668..2771 FT /number=19 FT /note="INTERNAL EXON; p-value: 0.983." FT exon 2772..2923 FT /number=20 FT /note="INTERNAL EXON; p-value: 0.995." FT exon 2924..3136 FT /number=21 FT /note="INTERNAL EXON; p-value: 0.992." FT exon 3137..3419 FT /number=22 FT /note="INTERNAL EXON; p-value: 0.743." FT exon 3420..3523 FT /number=23 FT /note="INTERNAL EXON; p-value: 0.909." FT exon 3524..3889 FT /number=24 FT /note="INTERNAL EXON; p-value: 0.707." FT exon 3890..4035 FT /number=25 FT /note="INTERNAL EXON; p-value: 0.998." FT exon 4036..4276 FT /number=26 FT /note="INTERNAL EXON; p-value: 0.806." FT exon 4277..4456 FT /number=27 FT /note="INTERNAL EXON; p-value: 0.977." FT exon 4457..4609 FT /number=28 FT /note="INTERNAL EXON; p-value: 0.976." FT exon 4610..4797 FT /number=29 FT /note="INTERNAL EXON; p-value: 0.997." FT exon 4798..4929 FT /number=30 FT /note="INTERNAL EXON; p-value: 0.844." FT exon 4930..5127 FT /number=31 FT /note="INTERNAL EXON; p-value: 0.993." FT exon 5128..5257 FT /number=32 FT /note="INTERNAL EXON; p-value: 0.921." FT exon 5258..5434 FT /number=33 FT /note="INTERNAL EXON; p-value: 0.758." FT exon 5435..5559 FT /number=34 FT /note="LAST EXON; p-value: 0.999." FT CONTIG join(NC_006583:6076192...6076114, 6075832...6075764, FT 6064020...6063867, 6061453...6061357, 6048884...6048720, FT 6041439...6041261, 6038761...6038637, 6038334...6038162, FT 6036187...6036044, 6032242...6032039, 6031162...6030934, FT 6030742...6030646, 6024173...6024115, 6019514...6019242, FT 6017756...6017553, 6002774...6002610, 6001476...6001378, FT 6000914...6000763, 5999236...5999133, 5996936...5996785, FT 5995491...5995279, 5993037...5992755, 5989838...5989735, FT 5988020...5987655, 5986961...5986816, 5986723...5986483, FT 5986066...5985887, 5984080...5983928, 5978463...5978276, FT 5970768...5970637, 5968550...5968353, 5966522...5966393, FT 5964337...5964161, 5963403...5963279) XX SQ Sequence 5559 BP; 1411 A; 1608 C; 1489 G; 1051 T; other; atgcagcctg acatctggaa caaaaacgtt actgtcagcc gccatgagca tgctggaggc 60 gaaaatgtga tggaaatttc acagaatgaa aacagtctaa tctccccgga agaacgggtc 120 gaaggctacc agccacggct gaacactaga agaggggtgc ggacgaggaa gtggcgtgaa 180 cttggagcgg gacgtaccca gccggccgcg gccgcggtcc tgctgcagtc ggggcgatca 240 gtgagccgac ccgacccgac ccgacccgct gctaaggaag cgctgcaagt gccgccctgc 300 gttttcagtc ccctgcggtc agacggtggt cttagtgaca tcatcagaag gtcacggtgc 360 cagaggtcat ttacctcact tcacgtccca agaagaaggc cacatcgatg tgaccagtgc 420 ccccaaacat ttaatgttga attcaacctg acacttcata aatgcaccca caatggggaa 480 gatcctacct gtcctgtgtg taacaagaaa ttctccagag tggctagtct caaagcgcat 540 attatgctac atgaaaagga agagaatctc atctgctctg agtgtgggga tgagttcact 600 ctgcagagcc agttggccat acacatggaa gagcaccgcc aggagctggc cgggaaccgg 660 gttcacacct gcaaggcctg taggaaggag tttgagacat cctcacagct gaaggagcac 720 atgaagactc attacaaaat tagggtatca agtacaaggt cttataatcg gaacatcgac 780 aggagtggat tcacatattc atgcccacac tgtggaaaga catttcagaa gccaagtcag 840 ctaactcggc acattaggat acacacaggt gaaaggccgt ttaaatgtac tgaatgtggg 900 aaagctttta accagaaggg ggcactgcaa actcacatga ttaaacatac aggtgaaaaa 960 ccccacgcct gtgccttttg tcctgctgcc ttttcacaaa aagggaacct gcagtcacat 1020 gtgcagagag ttcactcaga ggtcaagaat ggccctacgt ataattgtac agaatgcagt 1080 tgtgtattta aaagtctagg tagcctgaac actcacatca gcaagatgca catgggcgga 1140 ccacagaatc cagcaagctc tacagagact gctcacgtgt taacggccac actgttccag 1200 acgttacctc tccagcagac ggaagtccac gtcacgtccg catcaagcca gcagaattca 1260 caggccgtga ccgacgtcat ccagcagctc ctggagctct cggagccggg gccggcagag 1320 tccagccagc ccccgcagcc cggccagcag ctcagcatca cggtgggcat caaccaggat 1380 attttgcagc aagccttaga aaacagtggg ctgtcttcaa ttccagctgc agcacacgct 1440 cacgacacca gccacgccag gacgtcctct gcgcagagcc aaaatccaga tgctcctcac 1500 actgcgagtg aacagaccca ccccacagat gcagagcagg aaaaagaaca agaaagccca 1560 gagaagttgg ataaaaaaga aaaaaaaatt ataaagaaga agtcaccatt tctgcctgtc 1620 cctcgggctt gttcctggat cgtctttgct gctccctgca gccgtgtgct gaccatgtct 1680 ggccctcccc ttcccacagt gccgccgcca gacttaagtc ccgtgggcat atggcttagc 1740 cggctgcttg tagaccccat caccagcttt gagggttcaa tccgtgagga gaacggtgtt 1800 cgatggcatg tatgtcctta ctgcaccaag gagttccgga agccgagtga cctggtgcgc 1860 cacatccgca ttcataccca tgagaagccc ttcaagtgtc cacagtgttt ccgggccttt 1920 gctgtgaaga gcaccctgac cgctcacatc aaaacgcaca cgggcatcaa agcgttcaag 1980 tgccagtact gcctgaagag cttttccacc tcggggagcc tcaaagtgca catccgcctg 2040 cacacagggg tcagaccttt tgcttgtcct cactgtgaca aaaggtttcg aacctcaggc 2100 cataggaaga ctcacattgc ttctcacttt aaacacacgg agttaagaaa gatgaggcac 2160 cagcgtaaac ctgcaaaggt tcgagtcggc aaggccagcg ttccagtccc tgatattcct 2220 ttgcaagagc cgattctcat aactgacgta gatgacagtg ctgtggacca gcagagcatg 2280 cacgtctcga cacacatgca ggtggaggtt gagagcgaag agctgcagca agcggcggcg 2340 gcaggcacca cagaccccga ggccatgcta gaactggagc cccagcaggt cgtgcgcacg 2400 gaagatgcgg gacttgacag gttcgtggcc ccgcccgctc tgcaagggca catggaccag 2460 tttgaggagc aggcgccagc acagcagtcc ttcgaacagg ctggcttgtc gcagggcttt 2520 accgtgactg atacgtatag tcagccaacc ccgtttgcac ccgtccagca gctacaggac 2580 tccagcacac tggaatctca agccctatcc accagcttcc atcagcagaa cctactgcag 2640 gtccctagct ctgacgctat gaacgtaacc actcgtctga tccaggagtc atcccaggag 2700 gaactggagc tgcagagtca acgtccacaa ttcctggagg acagggagga tcagagccgg 2760 cgctcctaca ggtgtgagta ctgcaacaaa ggctttaaga agtctagcca cctgaagcag 2820 catgtgcggt cccacactgg tgagaagccc tacaagtgca agctctgtgg acgcggcttt 2880 gtttcctccg gggtcctcaa gtctcacgag aagacacaca caggagtaaa ggcattcagc 2940 tgcagtgttt gcaacgcctc attcacgacc aatggcagcc tcaccaggca catggccacg 3000 cacatgagca tgaagcctta caagtgtccg ttttgtgagc agggcttccg gaccacagtg 3060 cactgtaaga agcacatgaa gaggcaccag gccgtcccct ctgctgtgtc agcaacagga 3120 gaggccgaag gaggagatgt gtgtatggag gaagaggagg agaattctga aaggagcgcc 3180 tcccgaaaag ctcgtcctga ggtcatcact tttaccgagg aggagacagc acagttggcc 3240 aagattcggc cgcaggagag cgccaccgtg tccgagcagg tcctagtgca gtcggcagcg 3300 gagaaggacc gcatcagtga gatgaaggac aggcaggcag agctggaggc cgagcccaag 3360 tatgccaact gctgctccta ctgccccaag agcttcaaga agcccagtga tctggtgagg 3420 catgttcgga tccacactgg agaaaagcca tacaaatgtg atgaatgcgg gaagagcttt 3480 actgttaagt ccaccctaga ctgccatgtg aagacgcaca caggtcagaa gctcttcagc 3540 tgtcacgtgt gcagcaacgc cttctcgacg aagggcagcc tgaaagtaca catgcgtctg 3600 cacacaggag caaagccttt caagtgtccc cactgtgagc tacgtttccg tacgtcaggg 3660 cggaggaaga cccacatgca gttccattac aagcccgacc ccaagaaagc ccggaagcca 3720 gtgacgcgaa gctcatcgga aggcctgcag cccgtgaacc tgctcagccc tgcctccacc 3780 gacccgaacg tgttcatcat gaacaactct gtcctaacag gacagttcga tcagaacgtg 3840 cttccccagg ggctggtggg ccaggcgctt cttcctgcct ctgtgtcagc tggtggtgac 3900 tggacggtgt ctctgacgga cgggagcctg accacactgg agggcataca attacagctg 3960 gccgctaact tagttggccc aaatgttcag atctctggaa tcgatgcctc cagcattaat 4020 aacatcacgt tacagattga tccaagtatt ttgcagcaga cattacaaca gggcaacttg 4080 cttacgcagc cactgccagg ggagcccggc ttggcctcac agaacagctc tctccagaca 4140 caggacagca cggtcccagc cagtgttgtc attcagccca tccccggcct gtccttacag 4200 cccacagtga cctctgccag tctgaccatt ggcccgctgt ccgagcagga cccagtgatg 4260 accaccagca gcagtggaac acaagacctc tctcaggtga tgacatcgca aggcctggtg 4320 tccacctcca gtggccccca cgagatcacc ctgaccatta acaactcgag cctgagccag 4380 gtgttggctc aggctgctgg acccacggct gcgtcgtcct cgggctctcc ccaggaaatt 4440 accttgacca tttcaggtca agatcttatt cagcacaatg ctcatggaag tagtgaagtg 4500 aatgggagta tacgcttgtc agcccccgct gccactcagt ctgcaggtgc caccctgacc 4560 atcagcagcg accagctgct ctcacagggt gcaacgctaa actcctcaga acttaatgct 4620 accactggca gccttccttc gaccacacca atgtctccat ctgccatatc tgctcagaac 4680 ctggtcatgt cttcatcagg agtgggagga gatgccagtg tcacgctgac tctggccgat 4740 actcagggct tgctctctgg aggactggac acggtcacgc tcaacattgc ttctcagggc 4800 cagcagttcc cagccttact caccgacccc tcgctctcag gccagggggg agcaggttcg 4860 ccgcaggtca tcttggtgag ccacactcca cagccctccg ctgctgcgtg tgaggaaatc 4920 gcctaccagg taactgatgt atcggccagc ctggcaccag gagggccacc tgagaaggag 4980 ggccggctgc accagtgctt ggagtgcggc cgcacatttg catcggcagc cctgctgctg 5040 caccacagca aggaggtgca tggccgcgag cgcatccatg tgtgtcctgt gtgcaggaag 5100 gccttcaagc gtgccacgca cctcaaggag catatgcaga cacatcaagc tggcccctca 5160 ttgagctccc agaagccaag agtgtttaaa tgtgacacct gcgaaaaggc gttcgccaag 5220 ccaagccagc tggagcggca cagccgcatc cacacaggag agcggccatt ccactgcacg 5280 ctctgtgaga aagccttcaa ccagaagagt gccctgcagg tgcacatgaa gaagcacaca 5340 ggggagcggc cctacaagtg tgactactgc atcatgggct tcacccagaa gagcaacatg 5400 aagctccaca tgaagcgggc acacagctac accggaaatc tgcaggagcc cgtggtgcag 5460 caggagcacg gagctgagga gctgagccgg accctccatc tggaggaggt ggtgcaggag 5520 tccgctagcg agtggcaagc gctggccaat gtgttctga 5559 // ID NC006583_130; SV 1; special; RNA; MAM; 1119 BP. XX AC NC006583_130; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_130; NC006583_130. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..1119 FT /organism="Canis familiaris" FT CDS 1..1119 FT /protein_id="NC006583_130" FT /db_xref="trGEN:NC006583_130" FT /translation="MRVPRMMLSILKDSLITLSIPERNLLPNNSIELADKGGI FT FSCANPNMSITCQMQHIRFLRGSRIFQFHGKFIMKPCEKEQGAGGGPANPPTH FT CEPGLMDDRRTCWGKAPGLAADGSSARSRRPPRHVAVAVAVARPPLAARSMLG FT KRGVCRAGARGREPAVGLRVGVFPPLVEGRPEGGPGRAFRKLGAFGSHSPGFC FT SGLENPIADGCTSGASVRSDTSQAVHKPSSLRTNGTMEYYSALTRREILSPAI FT AWVNLKDVMLSEIRRRQMDKFCIIPLVGAHSISDMEDLQEGCRELPERHEHIR FT PHKDLYTNAQSSTSRDSQQVETTQISVSGRTDKPTVLWLHNGLSHGHKKGVKY FT DTCGTMNEPCQHCAK" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '+' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..72 FT /number=1 FT /note="FIRST EXON; p-value: 0.381." FT exon 73..171 FT /number=2 FT /note="INTERNAL EXON; p-value: 0.979." FT exon 172..248 FT /number=3 FT /note="INTERNAL EXON; p-value: 0.138." FT exon 249..334 FT /number=4 FT /note="INTERNAL EXON; p-value: 0.769." FT exon 335..554 FT /number=5 FT /note="INTERNAL EXON; p-value: 0.544." FT exon 555..664 FT /number=6 FT /note="INTERNAL EXON; p-value: 0.037." FT exon 665..838 FT /number=7 FT /note="INTERNAL EXON; p-value: 0.005." FT exon 839..894 FT /number=8 FT /note="INTERNAL EXON; p-value: 0.012." FT exon 895..1119 FT /number=9 FT /note="LAST EXON; p-value: 0.035." FT CONTIG join(NC_006583:6115726...6115797, 6115930...6116028, FT 6120919...6120995, 6122536...6122621, 6122801...6123020, FT 6131643...6131752, 6145619...6145792, 6146881...6146936, FT 6148969...6149193) XX SQ Sequence 1119 BP; 268 A; 312 C; 332 G; 207 T; other; atgcgggtgc cgagaatgat gctgtccatc ctgaaagact ccctcatcac cctctccata 60 ccagagagaa atctgcttcc aaacaattct atagaactgg ctgataaggg tggaatcttt 120 tcttgcgcca atccaaacat gagcatcact tgtcagatgc agcacatcag gttcctgaga 180 ggaagtagaa tattccagtt tcatgggaag ttcatcatga agccatgtga gaaggagcag 240 ggtgcaggcg ggggtcccgc caacccgccg acccactgcg agcccgggct catggatgac 300 cgccggacct gctgggggaa ggcgccgggc ctggccgcag acgggagcag tgcgcggtcc 360 cggcgccccc cgcgtcacgt ggccgtggcc gtggccgtgg cccgcccgcc gctggccgcc 420 cggagcatgc tgggtaaacg tggcgtctgc cgcgccggcg cccggggccg cgagcccgct 480 gttggtctcc gtgtcggcgt gttcccgccg cttgtcgagg gccgccccga ggggggtccg 540 ggcagagcgt tccgaaaact gggcgctttt ggcagccact cacccggctt ttgctcggga 600 ctggagaacc caattgctga tggatgcaca agtggggcca gcgtacgctc agacacgtcc 660 caagcggttc acaaaccttc cagtctaagg accaacggaa caatggagta ttactcagcc 720 ttaacaagga gggagattct gtcccctgcc atagcgtggg tgaacctgaa ggatgttatg 780 ctcagtgaaa taaggcggag acaaatggac aaattctgca tcattccact cgtaggagct 840 cacagcattt cagatatgga agacttacag gagggatgca gggagctgcc tgagagacat 900 gaacacatac gtccccacaa ggacttgtac acgaatgctc agagtagcac tagtcgtgac 960 agccaacaag tggaaaccac ccaaatatct gtgagtggac gaacggataa gccaactgtg 1020 ttatggctgc acaacggact atcacatggc cataaaaaag gagtgaagta tgacacatgc 1080 ggcaccatga acgagccttg ccagcattgt gccaagtga 1119 // ID NC006583_131; SV 1; special; RNA; MAM; 1074 BP. XX AC NC006583_131; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_131; NC006583_131. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..1074 FT /organism="Canis familiaris" FT CDS 1..1074 FT /protein_id="NC006583_131" FT /db_xref="trGEN:NC006583_131" FT /translation="MDRTPVKKRWTKPFWSTCQSIRLYPASAGRVTALPGRQF FT SRPQSAGGPGPQTAGGPGPQTAGGPRTTERRWPPDHRPQVAPGPQSAGGPRTT FT DRRWPPDHRPQVAPDHRPQVAPGPQSAGGPRTTDRRWPRTTDRRWPPDHRPQV FT APGPQSAGGPRTTDRRWPPDHRAQVAPGPQTAGGPRTTDRRWPRTTDRRQEGG FT RQLRVRYSDKCEEGGEQTEKCWTTACGWPRGWEQSQLAPQRPQVGNLCTSRFT FT TGPQSQRHCGPPSPRCELEMLLHQEYSSECPGKTQNVSGGEEAPKAGLQEDTA FT VTWPRVSVTGGCETRVSPGGNLRAQGSSVKWGPHGDPRAGAAGNPRPPGQLAE" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '-' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..581 FT /number=1 FT /note="FIRST EXON; p-value: 0.818." FT exon 582..723 FT /number=2 FT /note="INTERNAL EXON; p-value: 0.369." FT exon 724..834 FT /number=3 FT /note="INTERNAL EXON; p-value: 0.239." FT exon 835..1074 FT /number=4 FT /note="LAST EXON; p-value: 0.572." FT CONTIG join(NC_006583:6161409...6160829, 6160354...6160213, FT 6154849...6154739, 6153905...6153666) XX SQ Sequence 1074 BP; 232 A; 365 C; 376 G; 101 T; other; atggatagga cccccgtgaa gaagaggtgg acgaagcctt tttggtcaac ttgccagagc 60 atccggttat acccagcttc ggcggggcgc gtgacggctc tcccgggaag acagttcagc 120 cggccacaga gcgcaggtgg ccccggacca cagaccgcag gtggccccgg accacagacc 180 gcaggtggcc cccggaccac agagcgcagg tggcccccgg accacagacc gcaggtggcc 240 cccggaccac agagcgcagg tggcccccgg accacagacc gcaggtggcc cccggaccac 300 agaccgcagg tggccccgga ccacagaccg caggtggccc ccggaccaca gagcgcaggt 360 ggcccccgga ccacagaccg caggtggccc cggaccacag accgcaggtg gcccccggac 420 cacagaccgc aggtggcccc cggaccacag agcgcaggtg gcccccggac cacagaccgc 480 aggtggcccc cggaccacag agcgcaggtg gcccccggac cacagaccgc aggtggcccc 540 cggaccacag accgcaggtg gccccggacc acagaccgca gacaggaagg gggaagacag 600 ctgcgggtga gatactcgga caagtgcgag gaaggcgggg agcagacaga gaagtgctgg 660 acgacggcct gcggctggcc gcgcggatgg gagcagagcc agctcgcccc acagagaccc 720 caggttggga acctgtgcac atcccgtttc acgacaggcc cccagtcaca gaggcactgt 780 ggcccgccat ctcctcgctg tgagctggag atgttgctcc accaggagta ctcaagtgag 840 tgtcccggga aaacccagaa tgtatctgga ggagaagagg cccccaaagc ggggctgcag 900 gaggacacag cggtcacttg gccaagggtg tcagtcacag gcggctgtga gacacgcgtg 960 tccccggggg ggaacctgcg agcccagggc tccagcgtga agtggggccc ccacggggat 1020 ccacgggcag gagcagcagg gaaccccagg ccgccagggc agttggcaga atga 1074 // ID NC006583_132; SV 1; special; RNA; MAM; 1092 BP. XX AC NC006583_132; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_132; NC006583_132. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..1092 FT /organism="Canis familiaris" FT CDS 1..1092 FT /protein_id="NC006583_132" FT /db_xref="trGEN:NC006583_132" FT /translation="MTKDTPRTTQREQSAILSSCTLAIFSPLEKTSPDLGASS FT QWRHRQGRPVCVGATARRCVAPVRSSTDVAVQTPATRAGLLRGRGPPAVPWRP FT QPQPRARLPQGSRHRSASHHQVPWVLPLLSSTLCDPLAFPLSLGLQDQCLPPA FT AGSQPGPPFLLQRHQHVLWGSHRARHFPPHHPHVCLCCTLWSKCTNINISLLL FT HGGKSSSSDPCPRLRKSTQAETGPDARNPLPGTLTTNSAGQTGAPHPVLPVPA FT SSAALLSLTNFMEHSEIIFLFGHQKWLREAQMKSSQMALACYSLNSLKHEQSV FT PHGLSTCQSQRQHKPWVRPPDAQPLLLPSGPFRPRSPSKSEALWARGFPQQVP FT RSSSSS" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '+' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..6 FT /number=1 FT /note="FIRST EXON; p-value: 0.613." FT exon 7..136 FT /number=2 FT /note="INTERNAL EXON; p-value: 0.875." FT exon 137..328 FT /number=3 FT /note="INTERNAL EXON; p-value: 0.026." FT exon 329..509 FT /number=4 FT /note="INTERNAL EXON; p-value: 0.165." FT exon 510..765 FT /number=5 FT /note="INTERNAL EXON; p-value: 0.107." FT exon 766..825 FT /number=6 FT /note="INTERNAL EXON; p-value: 0.073." FT exon 826..919 FT /number=7 FT /note="INTERNAL EXON; p-value: 0.509." FT exon 920..1092 FT /number=8 FT /note="LAST EXON; p-value: 0.667." FT CONTIG join(NC_006583:6165895...6165900, 6167668...6167797, FT 6180600...6180791, 6187810...6187990, 6188332...6188587, FT 6194560...6194619, 6203053...6203146, 6204118...6204290) XX SQ Sequence 1092 BP; 203 A; 404 C; 269 G; 216 T; other; atgacgaagg acacccctcg gacaacccag agggaacaat ctgccatcct cagcagctgc 60 accctggcta tcttctcacc cttggagaag acatcccctg acctgggagc atcaagccag 120 tggcgacatc gtcaagggcg tcccgtttgt gttggggcca cagcacggcg ctgcgtcgcc 180 cccgttcgga gctctacaga cgtggcggtg cagacccccg cgacccgggc cggcctcctc 240 cgcggccgcg ggccccccgc cgtgccctgg cgcccacagc cgcagccccg cgcccggctg 300 ccccaaggct cccgacacag gagcgcaagc caccatcaag tcccctgggt gctcccgctg 360 ctctcttcta cgctctgtga cccgctggct tttccacttt ccctgggcct gcaggaccag 420 tgccttcctc ctgcagccgg ctcccagccc ggcccaccct tccttctgca gcgacatcag 480 catgtgctct ggggctctca cagggccagg cacttccctc ctcaccaccc ccacgtgtgt 540 ctgtgttgta cactctggtc caaatgcacc aatatcaaca tttccctcct cctacatgga 600 gggaagagct ccagttcaga tccttgcccc cgtctgcgaa aatccacgca ggcagagact 660 ggcccagatg caagaaaccc attgccaggg acactcacca ccaactctgc tggtcagacc 720 ggagcccccc acccggtgct gcctgtccct gcttccagtg ctgcgcttct cagtctcacc 780 aatttcatgg agcattcaga gatcattttc ctctttggac atcagaagtg gctccgtgag 840 gcccagatga aatcatctca aatggcgtta gcttgttatt ctctgaactc cttaaagcac 900 gaacagtctg tgccacacgg cctatccacc tgtcagtcac agagacagca caagccctgg 960 gtacggcctc ctgatgcgca gcctctgctg ctgccctcgg gcccattcag gcccagaagt 1020 ccctctaaga gtgaagccct ctgggcccgg gggttcccac agcaggttcc taggagcagc 1080 tcttcatctt ga 1092 // ID NC006583_133; SV 1; special; RNA; MAM; 1092 BP. XX AC NC006583_133; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_133; NC006583_133. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..1092 FT /organism="Canis familiaris" FT CDS 1..1092 FT /protein_id="NC006583_133" FT /db_xref="trGEN:NC006583_133" FT /translation="MQCYKTSSSVHKSRTVDRAPTSVDRRSVKMAIVCCHISH FT PENAGPHLISRYSCFHWVEERRGAPEEVSRLLLGPRLRDHDLNRRQMFQRRSR FT QAPLKGPRMKMEGRALTEEGTPGKGEQEEPEKLLEGPTEEEGGLKLRNADIWP FT KEEPVWRGDGSQLQASPGQVPSWLLWHHRQLSWLSETHGGRLVQDRHSRNHVC FT HLTVGHYPHLCGSAPGTDRVAGPTVPVPGRSKPPNEYHIPPRIQQEATDSKTH FT TPALEVQLAGRLCPKPRCGLFSPGQLYLGYRPCAQPPSGVAKPLQVHQAQSNN FT PESCSGLNYVPPKAVEVLAPVPVNGPYLEVVPARDPLKRVPVTIYKALAEPER FT FFGALE" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '+' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..74 FT /number=1 FT /note="FIRST EXON; p-value: 0.870." FT exon 75..223 FT /number=2 FT /note="INTERNAL EXON; p-value: 0.487." FT exon 224..316 FT /number=3 FT /note="INTERNAL EXON; p-value: 0.702." FT exon 317..607 FT /number=4 FT /note="INTERNAL EXON; p-value: 0.157." FT exon 608..803 FT /number=5 FT /note="INTERNAL EXON; p-value: 0.310." FT exon 804..1026 FT /number=6 FT /note="INTERNAL EXON; p-value: 0.703." FT exon 1027..1092 FT /number=7 FT /note="LAST EXON; p-value: 0.651." FT CONTIG join(NC_006583:6207897...6207970, 6209148...6209296, FT 6210377...6210469, 6210798...6211088, 6211730...6211925, FT 6216708...6216930, 6218178...6218243) XX SQ Sequence 1092 BP; 257 A; 316 C; 319 G; 200 T; other; atgcagtgct ataaaactag cagcagtgtc cacaagagcc gaacagtgga cagagccccg 60 acgtccgtgg acaggcgctc tgtaaagatg gctatcgtct gctgtcatat ttcccatccc 120 gagaacgccg gcccacatct cattagcaga tattcctgtt tccattgggt ggaggagagg 180 cggggggctc ctgaggaagt aagtcgtttg ctcctcggtc ccagacttcg ggatcatgac 240 ctgaaccgaa ggcagatgtt ccaacgacgg agccgccagg cgcccctcaa aggtcctcga 300 atgaagatgg agggccgggc actcacagag gagggcactc caggaaaggg agagcaagag 360 gagccagaga aactgctgga gggcccaact gaggaggaag gaggcctgaa actgaggaat 420 gcagacatct ggcccaagga ggagccggtg tggcgagggg atggctccca actgcaggcc 480 agcccaggcc aggtgccctc ctggcttctg tggcaccaca ggcagctgag ctggctttct 540 gagacccatg gagggcgcct tgtacaggat aggcattcga ggaatcacgt gtgtcacctg 600 actgtgggtc actacccaca cctgtgcggc tctgcaccag gcactgacag ggtggcagga 660 ccaacagtgc ctgtccctgg acgcagcaag ccaccaaatg agtaccacat cccaccccgg 720 atccaacaag aagccactga ttccaagacc cacactccag ccctggaggt gcagctggca 780 ggccgactct gcccaaagcc caggtgcggc ctcttctccc ctggacagct gtacctgggg 840 tacagaccct gtgcccagcc accatcaggt gttgcaaagc ccctacaggt gcaccaggct 900 cagagcaaca accctgaaag ttgttctggc ttgaattatg tccccccaaa agctgttgaa 960 gtcctggctc cagtccctgt gaatggacct tacttggaag tagttcctgc acgtgatcca 1020 cttaagaggg ttcctgtgac aatatacaag gccctcgcag agcctgagcg ttttttcggg 1080 gctttggaat ga 1092 // ID NC006583_134; SV 1; special; RNA; MAM; 699 BP. XX AC NC006583_134; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_134; NC006583_134. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..699 FT /organism="Canis familiaris" FT CDS 1..699 FT /protein_id="NC006583_134" FT /db_xref="trGEN:NC006583_134" FT /translation="MLRRAWLWGRAPAFPGGGWERVPNGGMMSTQRAVGEGHN FT VSVCSDGQTPRDPTVALFRLTKPSPASETWGPPPAHQPGLHTVTVPRAQNSSR FT DTEGNQTDTPMCHSIPDRVTCVHWSCSGGVHGGATLQGHLALLTHATTCTPCT FT PPHDPKLAPNKMPSHFHKGLIHKDVNYAQGYLSRLARPSSCPEANGQEELLTS FT YDLLSQEGTLVARKDVHMPGHPELVDAVGPVFTA" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '+' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..151 FT /number=1 FT /note="FIRST EXON; p-value: 0.837." FT exon 152..331 FT /number=2 FT /note="INTERNAL EXON; p-value: 0.440." FT exon 332..536 FT /number=3 FT /note="INTERNAL EXON; p-value: 0.002." FT exon 537..699 FT /number=4 FT /note="LAST EXON; p-value: 0.704." FT CONTIG join(NC_006583:6220596...6220746, 6221295...6221474, FT 6230754...6230958, 6238905...6239067) XX SQ Sequence 699 BP; 152 A; 235 C; 199 G; 113 T; other; atgctccgca gagcttggct ctgggggcgg gcgccggctt ttccaggtgg cgggtgggag 60 cgggtgccca acgggggaat gatgagcaca cagcgggccg tgggtgaggg ccacaacgtc 120 tccgtctgct cggacggcca gacaccccgg gatcccactg tggccctgtt cagactgacc 180 aagccctccc ccgccagcga gacttggggc cccccaccag cgcatcagcc aggactgcac 240 acggtcacgg tcccacgagc ccagaattcc tccagggaca cagaagggaa ccagactgac 300 acgcccatgt gtcattctat cccagacaga gtgacctgtg tacactggag ctgctctggt 360 ggcgtgcatg gtggagccac cctgcagggc cacctcgccc tcctgaccca cgcgaccaca 420 tgcacaccct gcacaccacc ccatgaccca aaacttgctc ccaacaaaat gccctctcat 480 ttccacaagg gcctcatcca caaggatgtt aactatgcac aaggatattt atccaggttg 540 gcccgaccca gcagctgccc agaggccaat ggccaggaag agctgctgac cagttatgat 600 ctcctctccc aggagggaac actggtggcc aggaaggacg tccacatgcc aggacaccct 660 gagctggtgg atgcagtggg accagtcttc acggcatga 699 // ID NC006583_135; SV 1; special; RNA; MAM; 1161 BP. XX AC NC006583_135; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_135; NC006583_135. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..1161 FT /organism="Canis familiaris" FT CDS 1..1161 FT /protein_id="NC006583_135" FT /db_xref="trGEN:NC006583_135" FT /translation="MEKEQKTSGNPTAKTDKAPPGSAAQEPATTRYDGTNRSN FT TESRPQRLVVAPSSPGLRLPQTQCREAVHARTRTHTHASIRADVLGCVCGRLG FT HLSTSREATSPRGYPAGGPRRVCTAPASRLRVPELPDILLLIVMCMIWSMAKV FT SFMTSVIELVQMRSCGEGVVENTATIQGVTVTFRYHVRKPLASTGSGVGPPWT FT FRIRGIIQPMVFGDRPPYSHRLYLRPRWERLASSHGTFQNAKCKVFLAPMVHT FT WHFSMTPVGQCSVSRTGDTCVSEVHGTKSLSSSRHPEPPVFWTLFRSLVCPIS FT GLEQDGAPGHLGQSSPVELTGYITSGKGVAVCLSAERAGHVSMTLASTQSLSL FT PIPNDLLNGKPSPPGPLRIGVRTKDATQS" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '-' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..18 FT /number=1 FT /note="FIRST EXON; p-value: 0.265." FT exon 19..116 FT /number=2 FT /note="INTERNAL EXON; p-value: 0.035." FT exon 117..385 FT /number=3 FT /note="INTERNAL EXON; p-value: 0.020." FT exon 386..552 FT /number=4 FT /note="INTERNAL EXON; p-value: 0.073." FT exon 553..668 FT /number=5 FT /note="INTERNAL EXON; p-value: 0.678." FT exon 669..803 FT /number=6 FT /note="INTERNAL EXON; p-value: 0.921." FT exon 804..954 FT /number=7 FT /note="INTERNAL EXON; p-value: 0.493." FT exon 955..997 FT /number=8 FT /note="INTERNAL EXON; p-value: 0.499." FT exon 998..1161 FT /number=9 FT /note="LAST EXON; p-value: 0.718." FT CONTIG join(NC_006583:6297306...6297289, 6296525...6296428, FT 6276109...6275841, 6272240...6272074, 6249905...6249790, FT 6248984...6248850, 6248218...6248068, 6246778...6246736, FT 6246630...6246467) XX SQ Sequence 1161 BP; 258 A; 346 C; 324 G; 233 T; other; atggagaaag agcagaagac gagcggcaac cccaccgcca agacggacaa ggcccctccg 60 ggctccgctg ctcaggagcc tgcgacgacc cggtacgacg gcaccaacag gagcaacact 120 gaatcacggc cccagcggct agtggtcgcc ccttcctcgc cggggctccg gctgccgcag 180 acccagtgcc gggaagctgt tcacgcgcgc acacggacac acacgcacgc atccatacgt 240 gcagacgtgc tgggatgcgt ttgcggccgg ctcgggcacc tgagcacgag ccgcgaggcc 300 acgtctccgc gtgggtatcc tgcgggtggt cccagacgcg tgtgcactgc acccgcctca 360 cggctgcgtg tccccgaact tcctgatatt cttttactga ttgtcatgtg tatgatttgg 420 tcaatggcca aggtgtcatt tatgacatca gtaatagagt tagtgcagat gcgcagttgt 480 ggcgagggcg ttgtagaaaa cacagcaacg attcaagggg tcacagtcac gtttcgctac 540 catgtgcgaa agcccctggc aagcactggt tctggggttg gcccgccctg gacattccgt 600 atccgtggaa ttatacagcc catggtcttt ggtgacaggc ctccttactc acataggctc 660 tatctaaggc cacgatggga gaggctggcc agcagccacg gcacattcca gaatgccaaa 720 tgcaaggtct tccttgctcc catggtgcac acttggcatt tttcaatgac tcctgttggt 780 caatgttctg tatcaagaac aggggacacc tgtgtttctg aagtacacgg caccaagagc 840 ctttccagct cacggcaccc agagcctcca gtgttctgga cactcttccg gtccctggtt 900 tgccccatct caggcctaga gcaggacggt gcacctggac acttggggca aagctcccca 960 gtggagctaa caggctacat cacaagtgga aaaggagtgg ccgtgtgctt gtctgcagaa 1020 agagcaggac atgtcagtat gacactggcc agcacacaga gcctgtctct cccgatccca 1080 aatgatttgc ttaatggcaa accatcacca ccggggccac tgagaattgg cgtcagaacg 1140 aaggatgcca cccagtctta g 1161 // ID NC006583_136; SV 1; special; RNA; MAM; 1275 BP. XX AC NC006583_136; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_136; NC006583_136. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..1275 FT /organism="Canis familiaris" FT CDS 1..1275 FT /protein_id="NC006583_136" FT /db_xref="trGEN:NC006583_136" FT /translation="MAVGWAYGVSDGLSTLIWFPGGVRVMSQHLHERQCHPAP FT SKSGMPARASPAHLTSRTDRDSRTAEGPRKNPCAPLMSLLTAQAPSWVRNHLQ FT LEKIRSQKGKHVNTQKTMYWQYCPSTSRTGEGGHKPTILGPKEHTTAHGYGKS FT VSQEQCAGRFCQRPLFSRIEGKAMCEAIVEELQEMGAGCFRSQNILSTNSFGG FT KVKALGKWLQDPSGIVKLLLRRNLLVFYVNTQHVLSWQVTAGILRGSAVACPA FT LCAAANQKQERWSGMRQRVHKATCGLLTSQGTQGAKESMHIPETRGCCPFADG FT TKEESSRINCDVQEEDTDSGRFLCTGGVQQGPAWHPGGEASVGQFRGPDTDTQ FT DPGSTNVGATDTRQRWQVPGGRKSQVSPAAAGDNTTQNSEHACRQRAAAPSRG FT ALAVTPPDMPHRIH" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '-' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..127 FT /number=1 FT /note="FIRST EXON; p-value: 0.948." FT exon 128..258 FT /number=2 FT /note="INTERNAL EXON; p-value: 0.476." FT exon 259..364 FT /number=3 FT /note="INTERNAL EXON; p-value: 0.397." FT exon 365..488 FT /number=4 FT /note="INTERNAL EXON; p-value: 0.025." FT exon 489..603 FT /number=5 FT /note="INTERNAL EXON; p-value: 0.808." FT exon 604..705 FT /number=6 FT /note="INTERNAL EXON; p-value: 0.853." FT exon 706..853 FT /number=7 FT /note="INTERNAL EXON; p-value: 0.383." FT exon 854..970 FT /number=8 FT /note="INTERNAL EXON; p-value: 0.537." FT exon 971..1115 FT /number=9 FT /note="INTERNAL EXON; p-value: 0.316." FT exon 1116..1275 FT /number=10 FT /note="LAST EXON; p-value: 0.919." FT CONTIG join(NC_006583:6321847...6321721, 6320777...6320647, FT 6320526...6320421, 6313893...6313770, 6311160...6311046, FT 6309057...6308956, 6308037...6307890, 6304079...6303963, FT 6302022...6301878, 6301305...6301146) XX SQ Sequence 1275 BP; 318 A; 385 C; 373 G; 199 T; other; atggccgtgg gctgggccta tggggtctca gatggtctct ccacgctcat ctggttccct 60 ggtggggtgc gggtcatgtc ccaacacctc cacgagaggc agtgtcatcc tgctccgtcc 120 aagtcaggga tgcctgcacg agcaagccct gcacacctaa catcccggac agacagggac 180 agccggacag ccgaaggacc tagaaagaac ccatgtgcac ccctgatgtc tctgctaacg 240 gcccaagccc cctcctgggt aagaaaccac cttcagctcg agaaaatccg aagtcagaaa 300 gggaaacatg tcaacacgca gaaaacaatg tactggcagt actgcccaag caccagcagg 360 acaggggaag gaggacacaa acccactatc ctggggccta aggaacacac aaccgcccac 420 gggtacggca agtctgtgtc ccaagaacaa tgtgccggac gtttctgcca aaggcccttg 480 ttttcaagaa ttgaaggaaa ggccatgtgt gaagcgatcg tggaggaact ccaagaaatg 540 ggggcgggat gctttcgaag ccagaacatc ttatccacca acagctttgg gggaaaagtg 600 aaggctctcg gaaagtggct gcaggacccg tccgggatcg tcaagctgct tctcaggcgg 660 aacctcctgg tgttttacgt gaacacacaa cacgtgctct cttggcaggt aactgccggc 720 atcctccggg gatcggccgt ggcatgtcca gctctctgtg ccgccgcaaa ccagaaacag 780 gagcgctggt ccggcatgcg gcaacgtgtg cacaaagcca cctgcggcct cctcaccagc 840 caggggaccc agggggccaa ggagtccatg cacatcccag aaacgcgtgg atgctgcccc 900 tttgcagacg gcacaaagga ggaaagctcc agaatcaact gtgatgtgca ggaggaggac 960 acagactcag gccgtttcct ctgcacagga ggtgttcaac aaggccctgc ctggcatcca 1020 gggggagaag ccagtgtggg acagttcaga gggccagaca ccgacaccca ggaccctggg 1080 agcaccaatg tgggagccac agacaccagg cagagatggc aagtacctgg gggcagaaag 1140 agccaggtct ccccggcggc cgcaggtgac aacacgactc agaactcaga gcacgcctgc 1200 cggcagcgcg ccgcagcccc gtccaggggt gctctcgccg tgaccccccc agacatgcct 1260 catcgaatcc attga 1275 // ID NC006583_137; SV 1; special; RNA; MAM; 2367 BP. XX AC NC006583_137; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_137; NC006583_137. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..2367 FT /organism="Canis familiaris" FT CDS 1..2367 FT /protein_id="NC006583_137" FT /db_xref="trGEN:NC006583_137" FT /translation="MDRNREAEVELRRGPSPSRASRSPEVDGDKAMSHSCCIC FT GKSFPFQSSLSQHMRKHTGEKPYKCPYCDHRASQKGNLKIHIRSHRTGTLIQG FT HEPEAGEMRVSEGLDGCTSPTKSSSACNKILNGATQLDDSKILLRSSKKEAEG FT AVCVPEEGKVAAQCSFCKCKFERKKDLEQHVHQAHKPFRCRLCSYMTLREESL FT LSHIDRDHITAQGPSGTEAYVENGKPELTPGEFPCEVCGQAFSQTWFLKAHMK FT KHRGSFDHGCHICGRRFKEPWFLKNHMKAHGPKTGSKNKPKSELDPIATINNV FT VQEEMIVAGLSLYEVCTKCGNLFTNLDSLNAHNAIHRRVEAGRTRAPAGEGAA FT QGGPPDSQQLFLQCLNLRPAVASVPARGQAGRRVAELDPVNSYQAWQLATRGK FT VAEPAEYLKYGAWDEALAGDVAFDKERREYILVSQEKRKREPEPGAPGPPRKR FT AGAPGDPTPGPLDPRPAARPSRRAAAPAGHGKSSECFECGKIFRTYHQMVLHS FT RVHRRARRDRDGPGDRAPRARCGSLSEGDSASQPSSPGSACGAAADSPGLGLA FT DEAADESGEEGAADPAPGRVCVGAVRSLASRCHKVTDSGWTADWKAQVVAGVR FT GIAAALGEQKRAGPVRSLAPEDTQPVLPQSWHSSWLVCREAVTKVTVRSPPPC FT LESPAVATQHRWQAVRMSFRWMARDQQDPPDLDGPEHPTLVVALPVGHIPPHP FT AAAAWWAFSSAGLCVAGTLNYSNDQRQCGNRASCNSKCLAHMCWEVEEKEPDR FT TGPMLLI" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '+' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..1759 FT /number=1 FT /note="FIRST EXON; p-value: 0.870." FT exon 1760..1848 FT /number=2 FT /note="INTERNAL EXON; p-value: 0.197." FT exon 1849..2057 FT /number=3 FT /note="INTERNAL EXON; p-value: 0.468." FT exon 2058..2250 FT /number=4 FT /note="INTERNAL EXON; p-value: 0.528." FT exon 2251..2310 FT /number=5 FT /note="INTERNAL EXON; p-value: 0.377." FT exon 2311..2367 FT /number=6 FT /note="LAST EXON; p-value: 0.497." FT CONTIG join(NC_006583:6326151...6327909, 6335140...6335228, FT 6335415...6335623, 6335680...6335872, 6337755...6337814, FT 6338126...6338182) XX SQ Sequence 2367 BP; 459 A; 767 C; 805 G; 336 T; other; atggatcgca accgagaggc tgaggtggag ctgagaaggg gcccgagccc cagcagggcc 60 agcaggagcc ccgaggtgga cggagacaag gccatgagcc acagctgctg catctgtggc 120 aagagcttcc ccttccagag ctctctgtct cagcacatgc gcaagcacac cggggaaaag 180 ccctacaagt gtccctactg cgaccacagg gcttcccaga agggcaacct gaagatccat 240 atccgcagcc accgcacggg cactctgatc cagggccacg agccagaggc tggtgagatg 300 cgcgtgtctg agggcctgga cggctgcacc agccctacca agagcagttc agcctgcaac 360 aagatcctga acggggccac ccagctggac gacagcaaga tcctgctgag gagcagcaag 420 aaggaggctg agggggctgt ctgtgtccca gaggagggca aggtggcagc ccagtgctcc 480 ttctgcaagt gcaagtttga gcggaagaag gacctggagc agcacgtgca ccaggctcac 540 aagccattca ggtgcaggct gtgcagctac atgaccctga gggaggagtc cctgctgagc 600 cacatcgaca gggaccacat cacagcgcag gggcccagcg gcactgaggc ctacgtggag 660 aacggcaagc ccgagctcac ccccggcgag tttccttgtg aggtgtgtgg ccaggccttc 720 agccagacct ggttcctcaa ggcccacatg aagaagcaca gaggctcctt cgaccatggc 780 tgccacatct gtggccggag attcaaagag ccgtggttcc tcaagaacca catgaaggca 840 cacggcccca agacaggcag caagaacaag cccaagagcg agctggaccc catagccacc 900 atcaacaacg tggtgcagga agagatgatt gtggccggcc tgtcccttta cgaagtctgc 960 accaagtgtg ggaacctgtt tacaaacctg gacagcttga acgcgcacaa cgccatccac 1020 cgccgggtgg aggccggccg gacgcgggcc ccggccgggg agggcgcggc ccagggtggc 1080 cccccggact cccagcagct gttcctccag tgcctgaacc tgcggcccgc cgtggccagt 1140 gtgcctgccc gcgggcaggc ggggcggcgt gtggccgagc tggacccagt caacagctac 1200 caggcctggc agctggccac gcggggcaag gtggccgagc cggccgagta cctcaagtac 1260 ggggcgtggg acgaggcgtt ggccggggac gtggccttcg acaaggagcg gcgcgagtac 1320 atcttggtga gccaggagaa gcgcaagcgc gagcccgagc ctggcgcacc ggggcccccg 1380 cgcaagcgag cgggtgcgcc cggggacccc acgcctgggc ccctggaccc caggcctgcc 1440 gcgcgcccca gccgccgcgc cgccgccccc gcaggccacg gcaagtcgtc cgagtgcttc 1500 gagtgcggca agatcttccg cacctaccac cagatggtgc tgcactcccg ggtgcaccgg 1560 cgcgcgcgcc gagaccgcga tggccctggg gaccgcgcac cccgtgcgcg ctgcggctcg 1620 ctcagcgagg gcgactcggc ctcgcagccc agcagcccgg gctcggcctg tggtgctgcc 1680 gccgactccc cgggcttggg cctggccgac gaggctgcgg atgagagcgg agaggagggt 1740 gcagccgacc ccgcaccagg gagagtttgc gtgggagcag tgcgctcact ggcttctagg 1800 tgccacaagg tcactgatag cggctggact gccgactgga aggctcaggt ggtggctggt 1860 gtccggggca tcgctgctgc gctcggggag cagaagcggg cagggcctgt ccggtcccta 1920 gcacccgagg acacacagcc tgtgctcccc cagtcctggc acagctcgtg gctggtgtgt 1980 cgggaagcag tgaccaaggt cactgtgcgg tccccacctc cctgccttga gtccccagcg 2040 gttgctactc agcacaggtg gcaggcggtc agaatgtcat tcaggtggat ggcccgggac 2100 cagcaggacc ctcctgatct ggacggccca gagcacccca ccctggtggt ggccctccct 2160 gtgggccaca ttcctcccca ccccgcagcg gcggcttggt gggccttctc ctcggcgggc 2220 ctgtgcgtgg cgggcacact gaattattca aatgatcaaa ggcagtgtgg aaacagggca 2280 tcatgtaaca gcaaatgcct agcacacatg tgctgggagg tggaggagaa ggagccagac 2340 cgtactgggc ccatgctgct gatttga 2367 // ID NC006583_138; SV 1; special; RNA; MAM; 3057 BP. XX AC NC006583_138; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_138; NC006583_138. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..3057 FT /organism="Canis familiaris" FT CDS 1..3057 FT /protein_id="NC006583_138" FT /db_xref="trGEN:NC006583_138" FT /translation="MPDHDFAGALPPVSGTFLLLAAPLATVLDSVNPVFCSPL FT EQDGCNICSQCLPRADPPVTKPVRLPSFVPEGEWIRLMFPCWALGADCATGPP FT LRELCSVSVSAPAVGLELVTPRVGAARDHAGPNLPRKPVPGAGPPWTRDSSVQ FT LREATGRFGAVLLPRWWKYWFTFVPGYPIAPAFHVVLEIGCFCEAQRFTLSAP FT NLNIVMSQEKPNRALLPWHRILPQQVLSATQPGGGWLTPFRGCFPAHRNHGSF FT IILFSPEPVFNLVNAGGVAAESLVDPGIPNLFLGLWFRRLWPLARLPLHFSVQ FT LLTFVGTESRESSARWAPDLSTGRLGNKRSRDVYGVMDIIVVTEISEDRDAAK FT CRGRQPYMCDRVCLYARVDPVTLHKNGALQLDVLALASCRASWSRLPAAVDGQ FT DVESTLWPSCPSLKPKKVRGVGCPETGGKPHRFCFSEEVAPTVLSNGDQSHAP FT GNNAPETDTGEPRAGNASSLSTLENRSRDASKRSEQPRFSVDLKTTGFHLKQE FT VSVSRDAANFPLHLGQTFPEGANLQLLSESPANHLKEKLSDLLMKGHTGGGRK FT GPAPDLIPLDLSERSSRDDPSRKELASSLQAALAVHPCPYCNHKTYYPEVLWM FT HKRVWHRVSCNSMAPQWIQPNGYKSIRNNLVFLARSGRTGPPPALGGKECQPL FT PIARFTRTQVPGGAPGPKSSSSPLGVTTKAASMPKSKESHPGGPCALWVASPE FT GHRQAKPGHGPEQHGAPAQPPLPKPRQEASPRPGPTGGSGFSRSATPTPSVIA FT RAGSQPPAGGRPGDKYIIPPAGASLGPPNKHSAPDPLKAKFSPQPQGQPHVKG FT DGGPSLPPREPPSKAGQELRPPASGGAGPRGNAALPGPPALHASKQEPMSDGH FT EKRLDILNIFKTYIPKDFASLYQSWGANGPALEHRGMLRTQARQGDFVCVECG FT KRFHQPSHLRAHTQAHTARRPQDVPVLGHALLEDSTCAPQELGAHILVATSQV FT VPGYEPPALVPSQNVTAPSPATCIL" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '+' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..91 FT /number=1 FT /note="FIRST EXON; p-value: 0.970." FT exon 92..192 FT /number=2 FT /note="INTERNAL EXON; p-value: 0.780." FT exon 193..341 FT /number=3 FT /note="INTERNAL EXON; p-value: 0.386." FT exon 342..435 FT /number=4 FT /note="INTERNAL EXON; p-value: 0.296." FT exon 436..541 FT /number=5 FT /note="INTERNAL EXON; p-value: 0.496." FT exon 542..718 FT /number=6 FT /note="INTERNAL EXON; p-value: 0.483." FT exon 719..744 FT /number=7 FT /note="INTERNAL EXON; p-value: 0.669." FT exon 745..967 FT /number=8 FT /note="INTERNAL EXON; p-value: 0.823." FT exon 968..1082 FT /number=9 FT /note="INTERNAL EXON; p-value: 0.023." FT exon 1083..1192 FT /number=10 FT /note="INTERNAL EXON; p-value: 0.476." FT exon 1193..1309 FT /number=11 FT /note="INTERNAL EXON; p-value: 0.397." FT exon 1310..2767 FT /number=12 FT /note="INTERNAL EXON; p-value: 0.969." FT exon 2768..2872 FT /number=13 FT /note="INTERNAL EXON; p-value: 0.882." FT exon 2873..3057 FT /number=14 FT /note="LAST EXON; p-value: 0.911." FT CONTIG join(NC_006583:6344913...6345003, 6351801...6351901, FT 6354979...6355127, 6355204...6355297, 6359902...6360007, FT 6365863...6366039, 6366858...6366883, 6367597...6367819, FT 6370643...6370757, 6371634...6371743, 6371785...6371901, FT 6374615...6376072, 6381390...6381494, 6382850...6383034) XX SQ Sequence 3057 BP; 577 A; 991 C; 920 G; 569 T; other; atgcccgacc atgactttgc aggggctctc cctcctgtgt ctggcacatt cctgctgttg 60 gcagccccgc tggccaccgt cctggactca gttaatccag tgttctgcag ccccttggag 120 caagacggct gtaacatctg tagccagtgt ctccccaggg ctgacccacc agtcaccaag 180 ccagttcgtc tgccctcctt cgtccctgaa ggtgagtgga tccggttaat gttcccgtgt 240 tgggctctgg gtgccgactg cgccacgggg cctccgctta gggagctttg ttcggtgtcg 300 gtgtctgcac ccgccgtggg gcttgagctc gtgaccccga gggtcggggc tgcccgtgac 360 cacgctggcc cgaacctccc caggaaacct gtgcctggag ctgggcctcc ctggacacgg 420 gacagctccg tgcagctcag ggaggccacg ggccgattcg gggcagtact gcttccacgc 480 tggtggaagt actggttcac gtttgttcct ggttatccga tagctcctgc cttccatgta 540 gttctggaaa ttggctgctt ctgtgaggcc caacgcttta ccctaagtgc acccaatcta 600 aatatagtca tgtcccagga gaagccgaac cgagccttgc tgccatggca tcggattctc 660 ccccagcagg tgctcagtgc cacacagcca ggaggcggct ggctgacacc cttccgaggg 720 tgctttcctg cgcacaggaa tcatgggagc tttattatcc tgttttcccc ggagcccgtt 780 tttaacctgg tgaacgcggg cggtgtggcc gccgagagcc tggttgaccc agggattcca 840 aacctgttcc tgggcctgtg gttccggcgc ctctggcccc tagcgcgcct tcccctccac 900 ttctcagtcc agctgctcac atttgtgggg acagagagca gagagtccag tgcacgctgg 960 gcgccagact tgagcactgg gaggctgggc aacaagagaa gccgtgatgt gtatggagtc 1020 atggacatca tagttgtcac agagatcagc gaggaccgtg atgcagccaa gtgcaggggg 1080 aggcagccgt acatgtgtga ccgtgtgtgc ctgtatgcac gcgtggaccc ggtcaccctg 1140 cacaagaatg gtgcgctgca gctggatgtg ctggctctgg cttcctgcag ggcctcgtgg 1200 tcgaggttac ccgcagccgt tgatgggcag gatgtggaat ccacactgtg gccgtcctgc 1260 ccttcattga agcctaagaa agtccgtggt gtgggctgcc ccgagacagg gggaaagcca 1320 caccgcttct gcttttctga agaagtagca ccgactgtgc tctccaatgg agaccagagc 1380 catgcgcctg gaaataacgc gccggaaaca gacactggtg agcccagagc cgggaatgca 1440 tcgtcattgt ccacccttga aaacaggagc agggatgctt ccaagagatc cgagcagccc 1500 aggttttctg tggacttgaa gacgacaggg tttcacctga agcaggaggt ctccgtctcg 1560 agggatgctg caaacttccc tttgcatttg ggtcagactt ttccagaagg agccaatctg 1620 cagctcttgt ctgagagccc agccaaccac ctgaaggaga agctgtccga cctgctcatg 1680 aagggacaca caggcggtgg aagaaagggg ccggccccag acttgatccc gctggacctc 1740 agcgagaggt caagtcggga tgaccccagc cgtaaggaac tggcctcgtc gctgcaagcc 1800 gcgctggctg ttcacccgtg tccttactgc aatcacaaga cctactaccc cgaggtcctg 1860 tggatgcaca agcgcgtctg gcacagggtc agctgcaact ccatggcccc ccagtggatt 1920 cagcccaatg gttacaaaag catcagaaac aacttggtct tcctagcccg gagtggacgc 1980 acgggccccc cacctgctct ggggggcaag gagtgccagc ctctgcccat cgctcggttc 2040 acccgcaccc aggtgccggg aggggctcca gggcccaaaa gcagttcctc gccgctgggt 2100 gtgaccacaa aagccgctag catgcctaag agcaaggaga gccaccccgg gggcccctgc 2160 gcactttggg tggccagccc tgaggggcac cggcaggcca agcctggcca tggccccgag 2220 cagcacggag cccctgcgca gccgcccctg cccaagccca ggcaggaggc cagccctaga 2280 cccgggccca cggggggcag cggcttcagc cggagtgcca cccccacacc ctctgttatt 2340 gctcgggcgg gcagccagcc cccggctggt gggaggccgg gggacaagta catcatccct 2400 cccgcggggg ccagcctcgg ccccccaaat aagcacagtg ccccggaccc cctgaaagcc 2460 aaattcagcc ctcagcctca gggtcagcca cacgtgaaag gtgatggggg cccttctcta 2520 cctccccgcg agcccccctc caaggccggc caggagctgc ggccaccggc cagtggtggg 2580 gcgggcccca gggggaacgc agccttgcct ggcccgcccg ccctgcacgc cagcaagcag 2640 gagcccatgt ctgacggcca cgagaagcgc ctggacatcc tcaatatttt taagacgtac 2700 attccaaagg actttgcttc tctgtaccag agctggggtg ccaatggtcc tgcactagag 2760 cacagaggga tgctccggac gcaggcccgc caaggagact tcgtgtgcgt ggagtgtggg 2820 aagcgcttcc accagcccag ccacctcagg gcgcacacgc aggcgcacac agctcggcgt 2880 ccgcaagatg tgcccgtgct tgggcacgcg ctgctggaag actcaacttg tgccccccag 2940 gaactgggtg cacatatcct cgtggccacc tcacaggttg tcccgggcta cgagcccccc 3000 gccttggtcc cctcacagaa tgtcactgcg ccctctcctg ctacctgcat cctctga 3057 // ID NC006583_139; SV 1; special; RNA; MAM; 273 BP. XX AC NC006583_139; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_139; NC006583_139. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..273 FT /organism="Canis familiaris" FT CDS 1..273 FT /protein_id="NC006583_139" FT /db_xref="trGEN:NC006583_139" FT /translation="MLEQNELPLKPGVLADLAVLPGETVLTQIPSRQCLSERE FT PEDTFPAYPGAPDSRQQPPCGCPHSDTDHLVEDQPQDSRPDTLNPGAAEPE" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '+' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..62 FT /number=1 FT /note="FIRST EXON; p-value: 0.491." FT exon 63..273 FT /number=2 FT /note="LAST EXON; p-value: 0.768." FT CONTIG join(NC_006583:6389006...6389067, FT 6389184...6389394) XX SQ Sequence 273 BP; 60 A; 90 C; 78 G; 45 T; other; atgcttgagc aaaatgagtt gccgctaaaa ccaggggtgt tggccgacct ggcggtgttg 60 ccgggagaga ccgttctaac acagatcccg tcccgacagt gcctctcaga aagggaacct 120 gaagacacgt ttccagcgta ccccggtgcc cctgacagcc gtcagcagcc cccttgcgga 180 tgtccccaca gcgacactga ccacctcgtg gaagatcagc cgcaggactc ccgcccggac 240 accttgaatc ctggagccgc tgagccggag tag 273 // ID NC006583_140; SV 1; special; RNA; MAM; 483 BP. XX AC NC006583_140; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_140; NC006583_140. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..483 FT /organism="Canis familiaris" FT CDS 1..483 FT /protein_id="NC006583_140" FT /db_xref="trGEN:NC006583_140" FT /translation="MCICSKYCDLPCFKFEEAEKPEVSNGDNLYMMGYHLPKH FT RDIHYPMDHGSDPARGTIVTTTINTITTTIIITNTIITITTMIITTNITTFNT FT ITTITTSSSLSLSPSSPLSPLPSLSPSSSPPPSPLSPPSSPTPPSTHIAITTT FT ITIIILIIAIILICK" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '+' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..66 FT /number=1 FT /note="FIRST EXON; p-value: 0.570." FT exon 67..161 FT /number=2 FT /note="INTERNAL EXON; p-value: 0.787." FT exon 162..483 FT /number=3 FT /note="LAST EXON; p-value: 0.673." FT CONTIG join(NC_006583:6396323...6396388, 6396776...6396870, FT 6402909...6403230) XX SQ Sequence 483 BP; 151 A; 175 C; 50 G; 107 T; other; atgtgcatct gttctaagta ctgtgacctg ccgtgtttca agttcgagga agcagagaag 60 ccagaggtga gtaatggcga taatctctac atgatgggtt accaccttcc aaagcaccga 120 gacatccatt accccatgga ccatggcagc gatcccgcca gaggcaccat cgtcaccact 180 accatcaaca ctatcaccac caccatcatc atcactaaca ccatcattac tatcaccacc 240 atgattatca ccaccaacat caccactttc aacaccatca ccactataac cacatcatca 300 tcactatcac tatcaccatc atcaccacta tcaccactgc catcattatc accatcatcg 360 tcaccaccac catcaccact atcaccacca tcatcaccaa caccaccatc aacccacatc 420 gccatcacca ccaccatcac tatcatcatt ctcatcattg ccatcatcct tatatgtaaa 480 tga 483 // ID NC006583_141; SV 1; special; RNA; MAM; 582 BP. XX AC NC006583_141; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_141; NC006583_141. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..582 FT /organism="Canis familiaris" FT CDS 1..582 FT /protein_id="NC006583_141" FT /db_xref="trGEN:NC006583_141" FT /translation="MGWQLSPHLGTRAGRRDRSQDKPPASIVISAVEVADLQK FT GQRVQQDSAHGKFPTLSVCNFPLNKQRERRSPACLLALSGLSEQDSAFGVGLE FT QRCNKWGVKQQLLFIISRQKSYKPNDDDDDNRRVTRVLMPGRFQVDDGAGGRG FT GSRSDSAPRVSAMPLVSRATVSSLSPSTGEPLSELLAVEPDGPAKTAA" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '+' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..44 FT /number=1 FT /note="FIRST EXON; p-value: 0.115." FT exon 45..152 FT /number=2 FT /note="INTERNAL EXON; p-value: 0.668." FT exon 153..282 FT /number=3 FT /note="INTERNAL EXON; p-value: 0.379." FT exon 283..454 FT /number=4 FT /note="INTERNAL EXON; p-value: 0.415." FT exon 455..582 FT /number=5 FT /note="LAST EXON; p-value: 0.008." FT CONTIG join(NC_006583:6406798...6406841, 6409854...6409961, FT 6413446...6413575, 6414470...6414641, 6422982...6423109) XX SQ Sequence 582 BP; 133 A; 153 C; 184 G; 112 T; other; atgggctggc agctgagtcc tcatctgggg actcgtgcgg gccgtaggga caggagccaa 60 gataaaccgc cggcctctat cgtcatcagt gctgtagagg tggccgacct gcagaaggga 120 cagcgggtcc aacaggacag tgcccatggt aagtttccaa ccctctctgt atgtaacttc 180 ccgctcaaca agcagaggga gagaagaagc cccgcgtgcc tccttgcctt gtccgggctc 240 agtgagcagg attcagcctt tggtgtgggg ctggagcaga ggtgtaacaa atggggagta 300 aaacagcagc ttttgttcat aatttctcgg cagaagagtt acaagccgaa cgacgatgat 360 gacgacaacc gcagagtcac aagggtcctg atgccaggaa ggttccaggt ggatgatgga 420 gctggcggtc ggggcgggag tcgttcggac tcagccccga gagtcagcgc catgcctctg 480 gtctccaggg ccacagtgtc ctcactgtca ccaagcactg gagaaccgct ctcagaactt 540 ttggccgtgg agccagatgg acctgccaaa actgctgcgt ga 582 // ID NC006583_142; SV 1; special; RNA; MAM; 570 BP. XX AC NC006583_142; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_142; NC006583_142. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..570 FT /organism="Canis familiaris" FT CDS 1..570 FT /protein_id="NC006583_142" FT /db_xref="trGEN:NC006583_142" FT /translation="MVQEISVISCNYLQVYNYLKRSLIKNNNNRDIGHEAEVQ FT SIEHTQKLVLIAVQAVYCITLGGAICVHRTAVLPVATTESFSGLSPHRVTQCS FT VAQKLSLQPLKYHGEWLAFPGKLGLTGAGVAMPRREGFQEGDWLALLSRTLQA FT PYVLGLAGPGHLLGISEDLGGAPRASSECFPERLPFGLESGPSW" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '+' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..97 FT /number=1 FT /note="FIRST EXON; p-value: 0.978." FT exon 98..203 FT /number=2 FT /note="INTERNAL EXON; p-value: 0.875." FT exon 204..342 FT /number=3 FT /note="INTERNAL EXON; p-value: 0.424." FT exon 343..506 FT /number=4 FT /note="INTERNAL EXON; p-value: 0.015." FT exon 507..570 FT /number=5 FT /note="LAST EXON; p-value: 0.134." FT CONTIG join(NC_006583:6437936...6438032, 6441407...6441512, FT 6444435...6444573, 6450679...6450842, 6453378...6453441) XX SQ Sequence 570 BP; 124 A; 153 C; 169 G; 124 T; other; atggtccagg agatctccgt tatttcttgc aactacctgc aagtctacaa ctacctcaaa 60 agaagtttaa ttaaaaacaa caacaacaga gatattggcc atgaggctga agtacagagc 120 atcgaacata cccagaagct ggtgttgata gctgtgcagg ctgtgtactg catcacattg 180 ggaggggcta tctgtgtaca caggaccgcc gttctccccg tggccaccac ggagtcattc 240 tctggtttat cacctcacag ggttacgcag tgctctgtgg cccagaagct gtccctacag 300 cccctgaagt accatggaga gtggttagca ttcccgggga agctgggcct cactggagca 360 ggtgtggcca tgccgcgacg ggaagggttt caggaagggg actggctggc cctgctctcc 420 aggactctgc aggctccgta tgtcctgggc cttgccgggc cgggccattt gctcggtatc 480 agtgaagact tggggggagc tcccagagca agcagcgaat gcttcccgga gcgtctcccc 540 ttcgggctgg agagcgggcc atcctggtga 570 // ID NC006583_143; SV 1; special; RNA; MAM; 585 BP. XX AC NC006583_143; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_143; NC006583_143. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..585 FT /organism="Canis familiaris" FT CDS 1..585 FT /protein_id="NC006583_143" FT /db_xref="trGEN:NC006583_143" FT /translation="MAVHTGGLRPKPGAITEGQQDKNSSPLQEQISKPRHVEV FT DYSPQPSAPTHSQTSSALAEKHPMLIFSISSQKSCVKLQHKMDGAFGGLGCPQ FT SITAKAEGAEYADRSHMCAAVWFEFEGSLSEDEHLHEALYPWSRCYRSTVPWN FT GMQGTMGSLQSVDHSFLPGIRWCGQKCTADIPRLFWLLHKRKAMVIGAS" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '-' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..6 FT /number=1 FT /note="FIRST EXON; p-value: 0.612." FT exon 7..66 FT /number=2 FT /note="INTERNAL EXON; p-value: 0.078." FT exon 67..161 FT /number=3 FT /note="INTERNAL EXON; p-value: 0.093." FT exon 162..313 FT /number=4 FT /note="INTERNAL EXON; p-value: 0.397." FT exon 314..472 FT /number=5 FT /note="INTERNAL EXON; p-value: 0.209." FT exon 473..585 FT /number=6 FT /note="LAST EXON; p-value: 0.803." FT CONTIG join(NC_006583:6485773...6485768, 6485165...6485106, FT 6477930...6477836, 6474645...6474494, 6472313...6472155, FT 6459496...6459384) XX SQ Sequence 585 BP; 144 A; 160 C; 161 G; 120 T; other; atggcggtgc acacaggggg ccttcgcccc aagcctgggg ccatcactga aggacaacag 60 gacaagaact ctagtccctt gcaggaacaa atcagtaagc caagacatgt agaagtggac 120 tactctcccc agccatctgc cccaacacat tctcagacga gttctgcttt agcagaaaaa 180 cacccgatgc tgatattttc cataagcagc cagaagtcat gtgtaaagct gcagcacaaa 240 atggatggag ccttcggggg cctggggtgc ccacagagca tcaccgcaaa ggcagagggt 300 gcagagtatg cagaccgatc ccacatgtgt gctgctgttt ggtttgaatt tgagggcagt 360 ttatctgagg atgagcacct tcacgaagct ctctatcctt ggtcacggtg ttaccgcagc 420 actgtccctt ggaatgggat gcaggggaca atgggctccc ttcagagtgt agaccacagc 480 ttcctcccag gcatccgatg gtgcggccag aagtgcacag ctgacatccc ccgtctgttc 540 tggctgctgc acaagcggaa agccatggtg atcggggcct cctga 585 // ID NC006583_144; SV 1; special; RNA; MAM; 1038 BP. XX AC NC006583_144; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_144; NC006583_144. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..1038 FT /organism="Canis familiaris" FT CDS 1..1038 FT /protein_id="NC006583_144" FT /db_xref="trGEN:NC006583_144" FT /translation="MGCQLMSEQKFAAPFISEEERRGASRVNSRGRREEMECL FT LFHPVEKSNTSEVNDRYYYKRGVAQGRPDAKGRNVVNAAHNDDGLQRCSPLMR FT EPSPYSHRRASEHSSVSVGPRMWTNGASALIKPETPRLEHQAPHCLPNLCDGS FT SQSYVIRQHLEPHVGGLWPTTARQVTQRVGGPVSPTGRWDPRTAPREQARKVV FT TPSCGDRYKSGSDEARPWSEHASDKAHEQFIATAALFLLSLKDPRLTLSIKHP FT HMGFGTLAKYGQCSVDVTGLRFLFPDEGGKIQNPSVMSLRNAGRARCAGACGP FT QERLIPLSPVTAQRGSRSGPVRRGSPDPIPHTGPCGFIWGR" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '+' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..66 FT /number=1 FT /note="FIRST EXON; p-value: 0.267." FT exon 67..197 FT /number=2 FT /note="INTERNAL EXON; p-value: 0.478." FT exon 198..256 FT /number=3 FT /note="INTERNAL EXON; p-value: 0.013." FT exon 257..393 FT /number=4 FT /note="INTERNAL EXON; p-value: 0.013." FT exon 394..516 FT /number=5 FT /note="INTERNAL EXON; p-value: 0.018." FT exon 517..728 FT /number=6 FT /note="INTERNAL EXON; p-value: 0.054." FT exon 729..879 FT /number=7 FT /note="INTERNAL EXON; p-value: 0.448." FT exon 880..1038 FT /number=8 FT /note="LAST EXON; p-value: 0.929." FT CONTIG join(NC_006583:6491494...6491559, 6493328...6493458, FT 6496284...6496342, 6521172...6521308, 6527270...6527392, FT 6530764...6530975, 6531636...6531786, 6534080...6534238) XX SQ Sequence 1038 BP; 249 A; 297 C; 298 G; 194 T; other; atgggatgcc agctgatgtc tgaacagaaa ttcgcagcac ccttcatatc tgaggaggaa 60 agaaggggag ccagccgtgt gaactccagg gggagaagag aggaaatgga gtgtctgtta 120 tttcatccag tagaaaaaag caacacctcg gaggtgaatg atcgatatta ttataagcga 180 ggtgtagctc agggcagacc tgatgccaaa ggaagaaatg ttgtgaatgc agctcataat 240 gatgatggat tacaacgatg ttctcccctc atgagagaac cttcaccata ctcacatcga 300 agggccagtg agcatagctc tgtctcagta ggaccacgaa tgtggacaaa tggggcctct 360 gccctaatca agcccgagac accccgtctg gagcaccaag ccccccactg cctccctaac 420 ctgtgcgatg gctccagcca gagttacgtc atacggcagc acctggagcc tcatgtagga 480 ggcctgtggc ccacaacggc cagacaagta acacagaggg taggcggccc agtgagcccc 540 acaggtcggt gggatccgcg gacggcaccc cgggagcagg cgagaaaggt ggtgaccccc 600 agctgcggtg acaggtacaa gtccgggagt gatgaggctc gcccttggtc agaacacgct 660 tccgacaagg ctcatgagca atttatcgcc acagctgctc tgtttctgtt atcgctcaaa 720 gacccaaggc tcaccctgag cattaagcac ccacacatgg gatttgggac cctggccaaa 780 tatggtcaat gttcagtgga tgtgaccgga ctgcggttcc tcttccctga tgaggggggc 840 aaaatacaaa acccctcggt gatgtccctt cgaaacgctg gaagagcccg ctgcgccggc 900 gcctgcggac cccaggagcg ccttatcccc ttgtccccgg tgacggcgca gcgcggctct 960 cgctcgggtc cggtccgtcg tggctcgccc gaccccatcc cgcacaccgg cccctgtggc 1020 ttcatctggg gaagatga 1038 // ID NC006583_145; SV 1; special; RNA; MAM; 711 BP. XX AC NC006583_145; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_145; NC006583_145. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..711 FT /organism="Canis familiaris" FT CDS 1..711 FT /protein_id="NC006583_145" FT /db_xref="trGEN:NC006583_145" FT /translation="MPDFRLYYKAVVIKTVWYWHKNRHIDQWNRIENPEVDPE FT LYGQLIFDKGGKTIHWKKDSLFNKRCWENWTSTCRKMKLDHSLAPYTKINSKW FT MKDLNVRQDSIKILEDNTGNTVTSCKIHPRRQKKQMQKPFHSWASSYRPVIET FT PPMSTTIPKDKTRTADGWAASSSWLADCLLFVLILHRSFLVLLLPLLCTFPSS FT SQALAAALPQGLVLGPPCSTLIPPRPLLQSTTVNVIYR" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '+' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..423 FT /number=1 FT /note="FIRST EXON; p-value: 0.908." FT exon 424..493 FT /number=2 FT /note="INTERNAL EXON; p-value: 0.872." FT exon 494..711 FT /number=3 FT /note="LAST EXON; p-value: 0.171." FT CONTIG join(NC_006583:6536036...6536458, 6537781...6537850, FT 6539476...6539693) XX SQ Sequence 711 BP; 211 A; 195 C; 153 G; 152 T; other; atgccagatt tcaggttgta ctacaaagct gtggtcatca agacagtgtg gtactggcac 60 aaaaacagac acatagatca atggaacaga atagagaacc cagaagtgga ccctgaactt 120 tatggtcaac taatattcga taaaggagga aagactatcc attggaagaa agacagtctc 180 ttcaataaaa ggtgctggga aaattggaca tccacatgca gaaaaatgaa actagaccac 240 tcccttgcac catacacaaa gataaactca aaatggatga aagatctaaa tgtgaggcaa 300 gattccatca aaatcctaga ggataacaca ggcaacacgg taacttcttg caagatacat 360 ccacgaaggc aaaagaaaca aatgcagaag cccttccaca gctgggcatc ctcctatcgt 420 cccgtgattg aaaccccacc gatgtccaca actatcccca aagacaagac gaggacagcc 480 gacggctggg ctgccagcag cagctggctg gctgactgtc tcctctttgt actgattctg 540 catcgctcct tcttggttct ccttctgcct ctgctgtgca cgttcccctc gtcttcccag 600 gccctggctg ccgcactgcc ccagggctta gttctgggtc ccccgtgtag cacgctcatc 660 ccacccaggc cgctactcca gtccacgact gtgaacgtca tttacaggtg a 711 // ID NC006583_146; SV 1; special; RNA; MAM; 669 BP. XX AC NC006583_146; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_146; NC006583_146. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..669 FT /organism="Canis familiaris" FT CDS 1..669 FT /protein_id="NC006583_146" FT /db_xref="trGEN:NC006583_146" FT /translation="MPMLSSPSPGDSESLQPNPGLPTADHGKYQIIVNTKEID FT LRTERGLYNYSWKSGHIVEDDKILYVENLQDSTKKLLERIHEYHRVAGCKINV FT QRSVAFLYTNNEAAEKEIKELTPFTTTTVPKPAHGDSGDGPGPGGGPHAHWPI FT ILTSTCEFGSKSALAAEETKAPKVTTCSLDKQPTTLPTRARAPGCGCRGPALG FT TGHRGDPHSTFIPDTQSSSDEHQD" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '-' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..79 FT /number=1 FT /note="FIRST EXON; p-value: 0.080." FT exon 80..175 FT /number=2 FT /note="INTERNAL EXON; p-value: 0.759." FT exon 176..372 FT /number=3 FT /note="INTERNAL EXON; p-value: 0.400." FT exon 373..504 FT /number=4 FT /note="INTERNAL EXON; p-value: 0.244." FT exon 505..669 FT /number=5 FT /note="LAST EXON; p-value: 0.912." FT CONTIG join(NC_006583:6580482...6580404, 6554993...6554898, FT 6550617...6550421, 6543536...6543405, 6543302...6543138) XX SQ Sequence 669 BP; 201 A; 188 C; 154 G; 126 T; other; atgcccatgc tctccagccc cagccctgga gactctgaga gcctgcagcc caaccctggg 60 ctgcccacag ctgatcatgg taaatatcaa attattgtga ataccaaaga aatcgatctg 120 aggactgaga gaggactgta taactacagt tggaaaagtg gccacatcgt ggaagatgac 180 aagatactct atgtagaaaa cctgcaagat tccaccaaaa aattgctaga acgaatacat 240 gaataccaca gagttgcagg atgtaaaatc aatgtccaga gatctgttgc atttctatat 300 accaacaatg aagcagcaga aaaagaaatc aaggaattga ccccatttac aactacaact 360 gtaccaaaac cagctcatgg agattctggt gatggtcctg gccctggagg tggccctcat 420 gcacactggc ccatcatcct cacatctacc tgtgagtttg gctctaaaag tgccctcgca 480 gctgaagaga ccaaggcgcc gaaggtaacc acctgctccc tggacaaaca gcccaccacc 540 ctcccaaccc gagcccgagc cccagggtgc ggctgtagag gcccagccct gggaacgggc 600 caccgtgggg acccgcacag cactttcatt cctgatacac agagcagctc ggacgagcat 660 caggactag 669 // ID NC006583_147; SV 1; special; RNA; MAM; 294 BP. XX AC NC006583_147; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_147; NC006583_147. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..294 FT /organism="Canis familiaris" FT CDS 1..294 FT /protein_id="NC006583_147" FT /db_xref="trGEN:NC006583_147" FT /translation="MAKEHNPQNVETRLLAGPQTASCDLKMELDAGQSDVGHE FT HSSEAFGCQCTSSLTQAPRTPLSKAGCDLMLMPLTSDGAILEMDEEFGEQLQD FT FPGRL" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '+' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..49 FT /number=1 FT /note="FIRST EXON; p-value: 0.591." FT exon 50..193 FT /number=2 FT /note="INTERNAL EXON; p-value: 0.551." FT exon 194..294 FT /number=3 FT /note="LAST EXON; p-value: 0.508." FT CONTIG join(NC_006583:6587241...6587289, 6589176...6589319, FT 6589442...6589542) XX SQ Sequence 294 BP; 80 A; 73 C; 79 G; 62 T; other; atggccaagg agcacaatcc acagaacgta gaaacaaggc tcttggctgg tccccagacg 60 gcctcctgtg acttaaagat ggagttggat gcaggacaaa gcgacgttgg tcatgagcat 120 agttcagaag cctttggatg ccagtgtacc tcttctctca cgcaagcccc aaggacaccc 180 ctgagcaagg ctggctgtga tttaatgtta atgccactaa cgtcagatgg ggccatcctg 240 gaaatggatg aggaattcgg agaacagctc caagatttcc ctggacgact ctga 294 // ID NC006583_148; SV 1; special; RNA; MAM; 1263 BP. XX AC NC006583_148; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_148; NC006583_148. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..1263 FT /organism="Canis familiaris" FT CDS 1..1263 FT /protein_id="NC006583_148" FT /db_xref="trGEN:NC006583_148" FT /translation="MPFRNDTADVWQPPLSRATTRCLWRVFLSVCKVTQAHSS FT HHMRDWDRFQLSAQWCRNVPTKKKKRKEEEEKKKKKKKKKKKKKKKKKKKEEE FT GRRKEKKKKKKKKKKKKKKKKKKKKKNHCKLLAGYEINFLQDTSTKAKETKAK FT MNYWDFIKLRSFCTAKDTVNKTQRQPTEWEKIFANDISDKGLVSKIYKELIKL FT NTKETNNPIMKWAKDMNRNLTEEDIDMANMHMRKCSASLAIREIQIKTTIRYH FT LTPVRMGKINKAGNNKCWRGCGEKGTLLHCWWEWELVQPLWKTVWRFLKQLKI FT DLPYDPAIALLGIYPKDTNAMKRRDTCTPMFLAAMATIAKLWKEPRCPTKDEW FT IKKMWFMYTMEYYSAIRNDKYPPFASTWMELEGDNKGDSDVTQKLWEDDSRQQ FT PQFLTTIALL" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '-' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..101 FT /number=1 FT /note="FIRST EXON; p-value: 0.292." FT exon 102..386 FT /number=2 FT /note="INTERNAL EXON; p-value: 0.085." FT exon 387..1168 FT /number=3 FT /note="INTERNAL EXON; p-value: 0.003." FT exon 1169..1263 FT /number=4 FT /note="LAST EXON; p-value: 0.811." FT CONTIG join(NC_006583:6623762...6623662, 6623240...6622956, FT 6602812...6602031, 6597239...6597145) XX SQ Sequence 1263 BP; 504 A; 244 C; 299 G; 216 T; other; atgcccttta ggaatgacac ggccgacgtc tggcagcccc cgctctcgag agctaccaca 60 aggtgccttt ggagagtctt ccttagcgtc tgcaaggtaa cgcaggcaca cagctcacat 120 cacatgcggg actgggacag atttcagctg tcagctcagt ggtgcagaaa cgtgcccacc 180 aaaaagaaaa aaagaaaaga agaagaagag aagaagaaga agaagaagaa gaagaagaag 240 aagaagaaga agaagaagaa gaagaaggaa gaagaaggaa gaagaaagga gaagaagaag 300 aagaagaaga agaagaagaa gaagaagaag aagaagaaga agaagaagaa gaagaatcac 360 tgcaaacttt tagcaggata tgaaattaac ttcttgcaag atacatccac gaaggcaaaa 420 gaaacaaaag caaaaatgaa ctattgggac ttcatcaagt taagaagctt ttgcacagca 480 aaggatacag tcaacaaaac tcaaagacaa cctacagaat gggagaagat atttgcaaat 540 gacatatcag ataaagggct agtttccaag atctataaag aacttattaa actcaacacc 600 aaagaaacaa acaatccaat catgaaatgg gcaaaagaca tgaacagaaa tctcacagag 660 gaagacatag acatggccaa catgcatatg agaaaatgct ctgcatcact tgccatcagg 720 gaaatacaaa tcaaaaccac aattagatac cacctcacac cagtgagaat ggggaaaatt 780 aacaaggcag gaaacaacaa atgttggaga ggatgcggag aaaagggaac cctcttacac 840 tgttggtggg aatgggaact ggtgcagcca ctctggaaaa ctgtgtggag gttcctcaaa 900 cagttaaaaa tagacctgcc ctacgaccca gcaattgcac tgttggggat ttaccccaaa 960 gatacaaatg caatgaaacg ccgggacacc tgcaccccga tgtttctagc agcaatggcc 1020 acgatagcca aactgtggaa ggagcctcgg tgtccaacga aagatgaatg gataaagaag 1080 atgtggttta tgtatacaat ggaatattac tcagccatta gaaatgacaa atacccacca 1140 tttgcttcaa cgtggatgga actggaaggt gacaacaaag gtgattctga tgtgacccag 1200 aagctgtggg aagatgattc ccggcaacag ccacaattcc tcaccacgat cgcactgcta 1260 taa 1263 // ID NC006583_149; SV 1; special; RNA; MAM; 585 BP. XX AC NC006583_149; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_149; NC006583_149. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..585 FT /organism="Canis familiaris" FT CDS 1..585 FT /protein_id="NC006583_149" FT /db_xref="trGEN:NC006583_149" FT /translation="MASPFCISTDLELKKPAMQKYQKVYINKVPQLLARHVSK FT GKGNKGKNELLRLHQDKKFLHSKGNSQQNQKTADRIGEDISNKGLVSKIYKEF FT IKLNTQRTNNPIKKWAEDMNRHFSKEDLQMANRHMNKCTTSLGIREIQIKYHL FT TTVRMTKMNNKKTTDVGEDVEKGKHSFTVGGNANWCSPSGKRYGSPSKS" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '+' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..28 FT /number=1 FT /note="FIRST EXON; p-value: 0.475." FT exon 29..90 FT /number=2 FT /note="INTERNAL EXON; p-value: 0.563." FT exon 91..585 FT /number=3 FT /note="LAST EXON; p-value: 0.618." FT CONTIG join(NC_006583:6625892...6625919, 6630431...6630492, FT 6635724...6636218) XX SQ Sequence 585 BP; 248 A; 115 C; 111 G; 111 T; other; atggcctcac cattctgcat ttccacagat ttggagctaa agaagccagc aatgcagaaa 60 taccagaagg tgtatataaa caaagtccca caacttcttg ctagacacgt ctccaaaggc 120 aagggaaaca aaggcaaaaa tgagctattg agacttcatc aagataaaaa gtttttgcac 180 agtaaaggaa acagtcaaca aaaccaaaag acagctgaca gaataggaga agatatatca 240 aataaagggc tagtatccaa aatctataaa gaatttatca aactcaacac ccaaagaaca 300 aataatccaa tcaagaaatg ggcagaagac atgaacagac atttctccaa agaagaccta 360 caaatggcca atagacacat gaacaaatgc acaacatcac ttggcattag ggaaatacaa 420 atcaaatacc acctcacaac agtcagaatg actaaaatga ataataagaa aacgacagat 480 gttggtgagg atgtggagaa aggaaaacac tcgttcactg ttggtgggaa tgcaaactgg 540 tgcagcccct ctggaaaacg atatggaagt ccctcaaaaa gttga 585 // ID NC006583_150; SV 1; special; RNA; MAM; 300 BP. XX AC NC006583_150; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_150; NC006583_150. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..300 FT /organism="Canis familiaris" FT CDS 1..300 FT /protein_id="NC006583_150" FT /db_xref="trGEN:NC006583_150" FT /translation="MENPKVPEMKKEIKDGVESSPPGLLLHQASSSSGLGGRQ FT PFTENNGLPKPFLFLLWPGSSSGGGRNCAPNQPASTVNGLPCGPYLLETCTLH FT VHFNSEQ" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '-' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..100 FT /number=1 FT /note="FIRST EXON; p-value: 0.612." FT exon 101..300 FT /number=2 FT /note="LAST EXON; p-value: 0.333." FT CONTIG join(NC_006583:6668711...6668612, FT 6649199...6649000) XX SQ Sequence 300 BP; 75 A; 83 C; 73 G; 69 T; other; atggaaaatc ccaaggttcc agaaatgaag aaagaaatca aggatggggt agaaagcagc 60 cccccaggcc tgctgttaca tcaggcctca agctcctctg gtttaggggg taggcagccc 120 ttcaccgaga acaatggatt gccaaagcct ttcttatttt tactttggcc aggctcctct 180 tctggcggag ggcgcaactg tgcccccaac cagcccgcct ccacagtcaa cggtttgcca 240 tgtggtccct atcttctgga aacgtgcacg ttgcacgttc attttaacag cgaacaatga 300 // ID NC006583_151; SV 1; special; RNA; MAM; 345 BP. XX AC NC006583_151; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_151; NC006583_151. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..345 FT /organism="Canis familiaris" FT CDS 1..345 FT /protein_id="NC006583_151" FT /db_xref="trGEN:NC006583_151" FT /translation="MGTARVAPPAAGAGRGAQARAAPAAEKSAPGLAGLPSAA FT LGAREAGELSQGRVSQGSSGALALSRCAASGAAGSSARALTLAARGGPRGGLR FT GLARAAAAARAPQALRARRPDR" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '+' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..345 FT /number=1 FT /note="SINGLE EXON; p-value: 0.908." FT CONTIG join(NC_006583:6694028...6694372 FT join(NC_006583:6694028...6694372) XX SQ Sequence 345 BP; 27 A; 125 C; 159 G; 34 T; other; atggggaccg cgcgggtcgc tccgcccgcg gcgggcgcgg ggcggggagc ccaggccagg 60 gcggcgccgg ctgcggagaa gagcgccccg ggcctcgcgg gcctgccctc ggccgcgctc 120 ggtgcccgcg aggcggggga gctgagccag gggcgcgtct cccaggggag cagcggggcc 180 ttggcgctga gccgttgtgc agccagcggg gctgcaggct cctccgctcg ggcgctaacc 240 ctggcggccc gcggtgggcc ccggggcggg ttgcggggcc tggctcgagc ggcggcggcg 300 gcccgggctc cccaggcgct gcgagcccgc cggccggatc gttag 345 // ID NC006583_152; SV 1; special; RNA; MAM; 216 BP. XX AC NC006583_152; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_152; NC006583_152. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..216 FT /organism="Canis familiaris" FT CDS 1..216 FT /protein_id="NC006583_152" FT /db_xref="trGEN:NC006583_152" FT /translation="MEWVLQTDGDVPGAVSEDRPLLLNSEPEQTQRLQPSLLR FT LLRQVHLQRGEKPKLVHEAIRQEGLGGPLPEH" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '+' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..22 FT /number=1 FT /note="FIRST EXON; p-value: 0.246." FT exon 23..216 FT /number=2 FT /note="LAST EXON; p-value: 0.872." FT CONTIG join(NC_006583:6713650...6713671, FT 6726062...6726255) XX SQ Sequence 216 BP; 52 A; 59 C; 67 G; 38 T; other; atggagtggg tcttacagac tgatggggat gtaccaggag ctgtgagcga agaccggccg 60 ctgttgctga attcagaacc tgagcaaaca cagcggctcc agccgagcct gctgaggctc 120 ctccgacaag ttcaccttca gcgtggggag aaacctaagc tcgttcacga agccatcagg 180 caggaaggac tcggtggacc cctgcctgag cactag 216 // ID NC006583_153; SV 1; special; RNA; MAM; 381 BP. XX AC NC006583_153; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_153; NC006583_153. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..381 FT /organism="Canis familiaris" FT CDS 1..381 FT /protein_id="NC006583_153" FT /db_xref="trGEN:NC006583_153" FT /translation="MGGHLASGIRRTFWKGIDFRKSDSRSGVGESLALQLTGA FT PGKPERCSYPLAMSPNFMVCMKPVNHIPFPLQQFKLKWLLFTAEIAGKLPNVF FT FAKRNWQKPKPSDFGDVHNSLSMASQLILPDLLS" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '+' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..129 FT /number=1 FT /note="FIRST EXON; p-value: 0.799." FT exon 130..213 FT /number=2 FT /note="INTERNAL EXON; p-value: 0.080." FT exon 214..381 FT /number=3 FT /note="LAST EXON; p-value: 0.192." FT CONTIG join(NC_006583:6739141...6739269, 6765193...6765276, FT 6770789...6770956) XX SQ Sequence 381 BP; 91 A; 91 C; 95 G; 104 T; other; atgggaggac atctggcatc tggaataaga cgcaccttct ggaaagggat agactttagg 60 aagtcagatt cacgttctgg tgttggggaa agtctggccc tgcagcttac tggggcccca 120 ggaaagccgg agaggtgctc ctacccattg gccatgagcc ccaacttcat ggtttgcatg 180 aaacctgtca atcatattcc atttcctctc cagcaattta aactgaagtg gctgctgttt 240 actgctgaga ttgcgggcaa actgccaaac gttttcttcg caaagaggaa ttggcagaag 300 ccaaagccca gtgattttgg tgatgtgcat aattcccttt ccatggcttc gcagctcatc 360 ctgcctgatc ttttgtctta a 381 // ID NC006583_154; SV 1; special; RNA; MAM; 642 BP. XX AC NC006583_154; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_154; NC006583_154. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..642 FT /organism="Canis familiaris" FT CDS 1..642 FT /protein_id="NC006583_154" FT /db_xref="trGEN:NC006583_154" FT /translation="MRLTIVGAAYPMRKRQVRRQAAPPAIAARHRRWDRDRDR FT DQNRDQDRDRDRDQASSPGSGSDPTVLTPQPAVITRSLAEYGVTFVQMHKHIL FT RDEQKKKDFPGHGAKIQRMKKGEEGEEEGKEEEEEEEEEEEEEEEKEKERRKK FT DRKKERKKERKKERRKKEKERKKERKKERKKERKKERKEGRKEGRKEGRKEEE FT RRKRILELTLLTTLK" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '-' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..64 FT /number=1 FT /note="FIRST EXON; p-value: 0.476." FT exon 65..232 FT /number=2 FT /note="INTERNAL EXON; p-value: 0.008." FT exon 233..294 FT /number=3 FT /note="INTERNAL EXON; p-value: 0.039." FT exon 295..321 FT /number=4 FT /note="INTERNAL EXON; p-value: 0.010." FT exon 322..642 FT /number=5 FT /note="LAST EXON; p-value: 0.029." FT CONTIG join(NC_006583:6818670...6818607, 6803336...6803169, FT 6799169...6799108, 6792870...6792844, 6783774...6783454) XX SQ Sequence 642 BP; 282 A; 111 C; 194 G; 55 T; other; atgaggctca caatcgtcgg ggctgcctat ccaatgagaa aacgtcaagt caggcggcag 60 gcagcccctc ctgccatcgc cgctcggcac cgccgctggg accgggaccg ggaccgggac 120 cagaaccggg accaggaccg ggaccgggac cgggaccagg cttccagccc ggggagcggc 180 tctgacccca cggtgctgac gccgcagccc gctgtgataa cccgaagcct cgcagaatat 240 ggagtgacgt ttgtgcaaat gcacaagcac atcctcaggg atgagcaaaa gaagaaagac 300 tttccaggcc atggtgcaaa gatacaaaga atgaagaaag gagaagaagg agaagaagaa 360 ggaaaagaag aagaagaaga agaagaagaa gaagaagaag aagaagaaga gaaagaaaaa 420 gaaagaagaa agaaagatag aaagaaagaa agaaagaaag aaagaaagaa agaaagaaga 480 aagaaagaaa aagaaagaaa gaaagaaaga aagaaagaaa gaaagaaaga aagaaagaaa 540 gaaaggaagg aaggaaggaa ggaaggaagg aaggaaggaa ggaaggaaga agaaagaaga 600 aaaagaatct tggaattgac cctcttaaca actctcaaat aa 642 // ID NC006583_155; SV 1; special; RNA; MAM; 1698 BP. XX AC NC006583_155; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_155; NC006583_155. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..1698 FT /organism="Canis familiaris" FT CDS 1..1698 FT /protein_id="NC006583_155" FT /db_xref="trGEN:NC006583_155" FT /translation="MPDFRLYYKAVVIKTVWYWHKNRHIDQWNRIENPEVDPE FT LYGQLIFDKAGKTIHWKRDSLFNKWCWENWTSTCRRMKLDHSLSPYTKINSKW FT MKDLNVRQDSIKILEKNTGNTLFELGHSNFLQDTSMKAKETKAKMNYWDFIKI FT RSFCTAKDTVNKTQRQPTEWEKVFANDISDKGLVSKIYKELIKLNTKETNNPI FT MKWAKDMNRNLTEEDIDMANMHMRKCSASLAIRKIQIKTTMRYHLTPARMGQI FT NKAGNNKCWRGCGEKGTLIHCWWECELVQPLWKTVWRFLKELKIDLPYDQAIA FT LLGIYPKDTNAMKRRDTCTPMFLAAMSTIAKLWKEPRCPTKDEWIKKMWFMYT FT MEYYSAIRNDKYPPFASVWMELEGIMLSEVNHINLDIYLKGKVICTESSDGYD FT PGGSPKLNSQILKHRTQQDEKMNWVFTSITLTGDLRLLMLTSAHASEVWHLEQ FT WMLQKTERNSRDGRVKNNTVCVTNTIVQIHKVHDKDPYVLYITPGTTLDRAAQ FT LHCCDVHNVSLAGTSVSVNSFLIDIGFSEFPGYSTKHKLLFIQMHCHDF" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '-' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..1162 FT /number=1 FT /note="FIRST EXON; p-value: 0.576." FT exon 1163..1335 FT /number=2 FT /note="INTERNAL EXON; p-value: 0.384." FT exon 1336..1430 FT /number=3 FT /note="INTERNAL EXON; p-value: 0.038." FT exon 1431..1446 FT /number=4 FT /note="INTERNAL EXON; p-value: 0.099." FT exon 1447..1522 FT /number=5 FT /note="INTERNAL EXON; p-value: 0.157." FT exon 1523..1624 FT /number=6 FT /note="INTERNAL EXON; p-value: 0.241." FT exon 1625..1698 FT /number=7 FT /note="LAST EXON; p-value: 0.483." FT CONTIG join(NC_006583:6864038...6862877, 6859970...6859798, FT 6851867...6851773, 6839672...6839657, 6839268...6839193, FT 6838344...6838243, 6836107...6836034) XX SQ Sequence 1698 BP; 615 A; 345 C; 364 G; 374 T; other; atgccagatt tcaggttgta ctacaaagct gtggtcatca agacagtgtg gtactggcac 60 aaaaacagac acatagatca atggaacaga atagagaacc cagaagtgga ccctgaactt 120 tatggtcaac taatcttcga caaagcagga aagactatcc actggaaaag ggacagtctc 180 ttcaataaat ggtgctggga aaattggaca tccacatgca gaagaatgaa actagaccac 240 tctctttcac catacacaaa gataaactca aaatggatga aagatctaaa tgtgagacaa 300 gattccatca aaatcctaga gaagaacaca ggcaacaccc tttttgaact cggccatagt 360 aacttcttgc aagatacatc catgaaggca aaagaaacaa aagcaaaaat gaactattgg 420 gacttcatca agataagaag cttttgcaca gcaaaggata cagtcaacaa aactcaaaga 480 caacctacag aatgggagaa ggtatttgca aatgacatat cagataaagg gctagtttcc 540 aagatctata aagaacttat taaactcaac accaaagaaa caaacaatcc aatcatgaaa 600 tgggcaaaag acatgaacag aaatctcaca gaggaagaca tagacatggc caacatgcat 660 atgagaaaat gctctgcatc acttgccatc aggaaaatac aaatcaaaac cacaatgaga 720 taccacctca caccagcgag aatggggcaa attaacaagg caggaaacaa caaatgttgg 780 agaggatgcg gagaaaaggg aaccctcata cactgttggt gggaatgtga actggtgcag 840 ccactctgga aaactgtgtg gaggttcctc aaagagttaa aaatagacct gccctacgac 900 caagcaattg cactgttggg gatttacccc aaagatacaa atgcaatgaa acgccgggac 960 acctgcaccc cgatgtttct agcagcaatg tccacaatag ccaaactgtg gaaggagcct 1020 cggtgtccaa cgaaagatga atggataaag aagatgtggt ttatgtatac catggaatat 1080 tactcagcta ttagaaatga caaataccca ccatttgctt cagtgtggat ggaactggag 1140 ggtattatgc tgagtgaagt aaatcacatt aatctggaca tatatctgaa aggaaaagtt 1200 atttgcacgg aaagcagtga tggttatgat ccaggaggaa gccccaagtt aaattcccaa 1260 atattaaaac acaggacaca acaggatgag aaaatgaatt gggtgttcac cagcatcacg 1320 ttaactgggg atttacgctt gctgatgctg acttcagctc atgccagtga ggtttggcat 1380 ttggagcaat ggatgctaca gaaaacagag cggaatagca gagatggcag agtaaaaaac 1440 aacacagttt gtgtgaccaa caccatagtc caaatacaca aggtgcatga caaggatcct 1500 tatgttcttt atataacccc aggtaccact ctggataggg cagcacagct tcactgctgt 1560 gatgtgcaca atgtctccct ggcaggtacg tcagtttccg tgaactcctt cctcatagac 1620 attggatttt ctgagtttcc tggttattca actaagcaca aattgctgtt catacagatg 1680 cactgccatg atttctga 1698 // ID NC006583_156; SV 1; special; RNA; MAM; 927 BP. XX AC NC006583_156; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_156; NC006583_156. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..927 FT /organism="Canis familiaris" FT CDS 1..927 FT /protein_id="NC006583_156" FT /db_xref="trGEN:NC006583_156" FT /translation="METNENEDTTIQNLWDAAKAVLRGKYIAIQASIQKLERT FT QIQKLTLHIKELEKKQQIDPTPKRRRELVKIRAELNEIETRRTVEQINRIRNW FT FFERINKIDKLLASLIKKKREKTQINKIMNEKGEITTNTKEIQTILKTYYEQL FT YANNLGNLGEMDAFLGSHKLPKLEQEEIESLNRPITREEIEAVIKNLPRHKSP FT GPDGFPGEFYQTFKEETIPILLKLFGKIERDGVLPNLFYEASITLIPKPDKDP FT TKKENYRPISLMNMDANILNKILANRIQQYIKKIIHHDQVGFIPGTQAGSTPV FT KQSM" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '-' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..927 FT /number=1 FT /note="SINGLE EXON; p-value: 0.945." FT CONTIG join(NC_006583:6865830...6864904 FT join(NC_006583:6865830...6864904) XX SQ Sequence 927 BP; 394 A; 180 C; 176 G; 177 T; other; atggaaacta atgagaatga agatacaacc atccaaaatc tttgggatgc agcaaaagca 60 gtcttaaggg ggaaatacat cgcaatacaa gcatccattc aaaaactgga aagaactcaa 120 atacaaaagc taaccttaca cataaaggag ctagagaaaa aacagcaaat agatcctaca 180 cccaagagaa gaagggagtt agtaaagatt cgagcagaac tcaatgaaat cgagaccaga 240 agaactgtgg aacagatcaa cagaatcagg aattggttct ttgaaagaat taataagata 300 gataaactat tagccagcct tattaaaaag aagagagaga agactcaaat taataaaatc 360 atgaatgaga aaggagagat cactaccaac accaaggaaa tacaaacgat tttaaaaaca 420 tattatgaac agctatacgc caataattta ggcaatctag gagaaatgga cgcattcctg 480 ggaagccaca aactaccaaa actggaacag gaagaaatag aaagcctgaa caggccaata 540 accagggagg aaattgaagc agtcatcaaa aacctcccaa gacacaagag tccagggcca 600 gatggcttcc caggggaatt ttatcaaacg tttaaagaag aaaccatacc tattctccta 660 aagctgtttg gaaagataga aagagatgga gtacttccaa atttgttcta tgaggccagc 720 atcaccttaa ttccaaaacc agacaaagac cccaccaaaa aggagaatta cagaccaata 780 tccctgatga acatggatgc aaacattctc aacaagatac tggccaatag gatccaacag 840 tacattaaga aaattattca ccatgaccaa gtaggattta tccctgggac acaggctggt 900 tcaacacccg taaaacaatc aatgtga 927 // ID NC006583_157; SV 1; special; RNA; MAM; 945 BP. XX AC NC006583_157; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_157; NC006583_157. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..945 FT /organism="Canis familiaris" FT CDS 1..945 FT /protein_id="NC006583_157" FT /db_xref="trGEN:NC006583_157" FT /translation="MTRRKTSPQKEESETVLSPTELQNLDYNSMSESQFRSTI FT IQLLVALEKSIKDSRGFMIAEFRSNQAEIKNQLNEMQSKLEVLTTRVNEVEER FT VSDIEDKLIAKRETEEKRDKQLKDHEDRLREINDSLRKKNLRLIGVPEGAERD FT RGPEYVFEQILDENFPNLGRETGIQIQEIERSPPKINKNRSTPRHLIVKLANS FT KDKEKILKAARDKKSLTFMGRSIRVTADLSTETWQARKGWQDIFRVLNEKNMQ FT PRILYPARLSFKMEGEIKSFQDRQQLKEYVTSKPALQEILRGTLKIPPLRRSS FT VEHSTKTRTE" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '-' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..945 FT /number=1 FT /note="SINGLE EXON; p-value: 0.864." FT CONTIG join(NC_006583:6867596...6866652 FT join(NC_006583:6867596...6866652) XX SQ Sequence 945 BP; 379 A; 175 C; 208 G; 183 T; other; atgactagaa ggaaaacctc acctcaaaag gaagaatcag aaacagtcct ctctcccaca 60 gagttacaaa atctggatta caattcaatg tcagaaagcc aattcagaag cactattata 120 caactactgg tggctctaga aaaaagcata aaggactcaa gaggcttcat gattgcagaa 180 tttagatcca atcaggcaga aattaaaaat caattgaatg agatgcaatc caaactagaa 240 gtcctaacga cgagggttaa cgaggtggaa gaacgagtga gtgacataga agacaagttg 300 atagcaaaga gggaaactga ggaaaaaaga gacaaacaat taaaagacca tgaagataga 360 ttaagggaaa taaacgacag cctgaggaag aaaaacctac gtttaattgg ggttcccgag 420 ggtgccgaaa gggacagagg gccagaatat gtatttgaac aaattctaga tgaaaacttt 480 cctaatctgg gaagggaaac aggcattcag attcaggaaa tagagagatc cccccctaaa 540 atcaataaaa accgttcaac acctcgacat ttaatagtga agcttgcaaa ttccaaagat 600 aaagagaaga tccttaaagc agcaagagac aagaaatccc tgacttttat ggggaggagt 660 attagggtaa cagcagacct ctccacagag acctggcagg ccagaaaggg ctggcaggat 720 atattcaggg tcctaaatga gaagaacatg caaccaagaa tactttatcc agcaaggctc 780 tcattcaaaa tggaaggaga gataaagagc ttccaagaca ggcagcaact aaaagaatat 840 gtgacctcca aaccagctct gcaagaaatt ttaaggggga ctcttaaaat tcccccttta 900 agaagaagtt cagtggaaca ttccacaaaa acaaggactg aatag 945 // ID NC006583_158; SV 1; special; RNA; MAM; 3432 BP. XX AC NC006583_158; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_158; NC006583_158. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..3432 FT /organism="Canis familiaris" FT CDS 1..3432 FT /protein_id="NC006583_158" FT /db_xref="trGEN:NC006583_158" FT /translation="MLIDPVVGSWHKGKGGRTLPAVYVTQGLISKRFLYADGS FT LQQQHRSGLRGQRGIVVVSREVATMKTPKRMESKVAERSRAASQLVEFNNLLF FT LMLNCKIYENRTRLTPSDIVSQVPSTMPDMQGCTSNSVCSIAEGTAKGERKEG FT CVHHSHPGTLSDGKVELCPGVRRTQTLGDKPEQLATNIRGGMALGHLQRVAPI FT SPNRENKRIQPGAMTELRAPRAPAAFITGLRSPVLQKAFSSPFLEASGLFPAT FT AKTILLFGIVFPALESLASPEAPPPGPTWPNYFTSGVGAQGRSSPGWEVLARE FT PIPRAQARAPGHLSPSGMARFLQPSLPLVPSATPVHPGQVPLSHNLSVGPGQV FT KRDSQVLDAPCDRLSSSLAAVAWTWNEVFNPLWTWSVAGHTQGECAELPKGCS FT AHGGTRRDPEQLEGLGRRLRGGGCTAPGSARRGSGRGRGSVRRGLRGSRSSSE FT GLGRQLRGGGCAARERESTSAGSGAQGAGTQPRIRPPPGQAEAGRAQDSEDAP FT APAEQISGPARSLQALQTEFLPELNPGFQSCPATGAVPPAASREKSIKDSRDF FT MTAEFRANQAEIKNQLNEMQSKLEVLTTRVNEVEERVSDLEDKLIAKRETEEK FT RDKQLKDHEDRLREINDSLRKKNLRLIGVPEGAERARGPEYVFEQILAENFPN FT LGRETGIQIQEIERSPPKINKNRSTPRHLIVKLANSKDKEKILKAARDKKSLT FT FMGRITLNVNGLNDPIKRRRVSDWIKKQDPSICCLQETHFRQKDTYSLKIKGW FT RTIYHSNGPQKKAGVAILISDKLKFTPKTVVRDEEGHYIILKGSIQQEDLTIL FT NIYAPNVGAAKYINQLLTKVKKYLDNNTLILGDFNLALSILDRSSKQNISKET FT RALNDTLDQMDFTDIYRTLHPNSTEYTFFSSAHGTFSRIDHILGHKSGLNRYQ FT KIGIVPCIFSDHNALKLELNHNKKFGRTSNTWRLRTILLKDKRVNQEIKEELK FT RFMETNENEDTTVQNLWDAAKAVLRGKYIAIQASIQKLERTQIQKLTLHIKEL FT EKKQQIDPTPKRRRELIKIRAELNEIETRRTVEQINRTRSWFFERINKIDKPL FT ASLIKKKREKTQINKIMNEKGEITTNTKEIQTILKTYYEQLYAK" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '+' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..43 FT /number=1 FT /note="FIRST EXON; p-value: 0.541." FT exon 44..140 FT /number=2 FT /note="INTERNAL EXON; p-value: 0.162." FT exon 141..269 FT /number=3 FT /note="INTERNAL EXON; p-value: 0.026." FT exon 270..361 FT /number=4 FT /note="INTERNAL EXON; p-value: 0.013." FT exon 362..593 FT /number=5 FT /note="INTERNAL EXON; p-value: 0.039." FT exon 594..640 FT /number=6 FT /note="INTERNAL EXON; p-value: 0.243." FT exon 641..754 FT /number=7 FT /note="INTERNAL EXON; p-value: 0.154." FT exon 755..893 FT /number=8 FT /note="INTERNAL EXON; p-value: 0.095." FT exon 894..1029 FT /number=9 FT /note="INTERNAL EXON; p-value: 0.020." FT exon 1030..1198 FT /number=10 FT /note="INTERNAL EXON; p-value: 0.119." FT exon 1199..1678 FT /number=11 FT /note="INTERNAL EXON; p-value: 0.489." FT exon 1679..2197 FT /number=12 FT /note="INTERNAL EXON; p-value: 0.396." FT exon 2198..3432 FT /number=13 FT /note="LAST EXON; p-value: 0.852." FT CONTIG join(NC_006583:6885582...6885624, 6891664...6891760, FT 6905403...6905531, 6916568...6916659, 6922646...6922877, FT 6923387...6923433, 6934235...6934348, 6948519...6948657, FT 6948815...6948950, 6967214...6967382, 6970098...6970577, FT 6971142...6971660, 6971983...6973217) XX SQ Sequence 3432 BP; 1054 A; 827 C; 877 G; 674 T; other; atgctcatcg atccagttgt aggctcatgg cacaagggga aaggtggtag gacgctgcca 60 gccgtgtacg tgactcaggg gctcatctct aaaaggtttc tgtatgctga tggtagcctc 120 cagcagcagc acagaagtgg gctccgaggg cagcgcggca tcgtcgtcgt gtcccgggaa 180 gtggccacaa tgaagacgcc caagaggatg gagtcaaagg tggcagagcg ctcgagagct 240 gcaagccaat tggtggagtt caataatctt ttatttctta tgttaaactg caaaatttat 300 gagaacagaa ccagacttac tccatctgac attgtttccc aagtgcctag tacgatgcct 360 gacatgcagg gatgtacgag caacagcgtc tgctccattg ctgaaggcac ggcaaaggga 420 gaaagaaaag aaggttgtgt ccatcattct catccaggaa cgttgtcaga cgggaaggtc 480 gaattatgcc ctggtgtcag aaggacacag acactagggg acaagcctga gcagctggcc 540 accaacatcc ggggaggaat ggcccttggg catctccaac gagtggctcc tatatctcct 600 aacagggaaa acaaacggat tcagcctggt gctatgactg agctgcgagc tccccgtgct 660 cctgcagcct tcatcactgg cctgcgctcg cctgtgctcc agaaggcatt ctcctcgccc 720 tttctggaag cctctgggct ctttcctgca acagccaaaa caattcttct ctttgggatt 780 gtctttcctg ccctagaaag ccttgcatcc cctgaagccc ctcctccagg ccccacatgg 840 cccaattact tcacctctgg ggtgggagca cagggacgtt catcacccgg ttgggaggtc 900 ctggccaggg aaccgattcc ccgtgcccag gcccgagccc ctgggcatct gtcacccagt 960 ggtatggcca ggttcctgca gccctccctg cctctggtcc cctccgcgac cccggtgcat 1020 ccaggacagg tcccattgtc ccacaacctg agcgtgggtc ccgggcaggt gaagagggac 1080 agccaagtgt tagatgcccc ctgtgacaga ctgtcttcct ctttagcagc tgtggcctgg 1140 acatggaatg aagtcttcaa tcctctatgg acgtggagtg tggctggcca tacgcaggga 1200 gagtgcgccg agctccctaa gggctgcagc gcgcacggcg ggacccggcg ggacccggag 1260 cagctggagg ggctcgggcg gcggctccgc ggagggggct gcacggcccc gggatcagct 1320 cggaggggct cgggcagagg aagaggctcc gtgcggaggg ggctgcgcgg ttccaggagc 1380 agctcggagg ggctcgggcg gcagctccgc ggagggggct gcgcggcccg ggagcgcgaa 1440 tccaccagcg caggctccgg agcacagggc gccgggacac agcccaggat ccggcctcct 1500 ccgggacagg cagaagccgg gagggcccag gacagcgagg acgctcctgc cccagctgag 1560 cagatcagcg gccccgcccg gagcctccag gccctgcaga cggagttcct gccggagctg 1620 aatccaggtt tccagagctg ccccgccact ggggctgttc ctcctgcggc ctcacgggaa 1680 aaaagtataa aggactcaag agacttcatg actgcagaat ttagagctaa tcaggcagaa 1740 attaaaaatc aattgaatga gatgcaatcc aaactagaag tcctaacgac gagggttaac 1800 gaggtggaag aacgagtgag tgacctagaa gacaagttga tagcaaagag ggaaactgag 1860 gaaaaaagag acaaacaatt aaaagaccat gaagatagat taagggaaat aaacgacagc 1920 ctgaggaaga aaaacctacg tttaattggg gttcccgagg gcgccgaaag ggccagaggg 1980 ccagaatatg tatttgaaca aattctagct gaaaactttc ctaatctggg aagggaaaca 2040 ggcattcaga tccaggaaat agagagatcc ccccctaaaa tcaataaaaa ccgttcaaca 2100 cctcgacatt taattgtgaa gcttgcaaat tccaaagata aggagaagat ccttaaagca 2160 gcaagagaca agaaatccct gacttttatg gggaggataa ctctgaatgt gaacgggctt 2220 aatgacccca tcaaaaggcg cagggtttca gactggataa aaaagcagga cccatctatt 2280 tgctgtctac aagagactca ttttagacag aaggacacct acagcctgaa aataaaaggt 2340 tggagaacca tttaccattc gaatggtcct caaaagaaag caggggtagc catccttata 2400 tcagataaac taaaatttac cccaaagact gtagtgagag atgaagaggg acactatatc 2460 atacttaaag gatctattca acaagaggac ttaacaatcc tcaatatata tgctccgaat 2520 gtgggagctg ccaaatatat aaatcaatta ttaaccaaag tgaagaaata cttagataat 2580 aatacactta tacttggtga cttcaatcta gctctttcta tactcgatag gtcttctaag 2640 caaaacatct ccaaagaaac gagagcttta aatgatacac tggaccagat ggatttcaca 2700 gatatctaca gaactttaca tccaaactca accgaataca cattcttctc aagcgcacat 2760 ggaactttct ccagaataga ccacatattg ggtcacaaat cgggtctgaa ccgataccaa 2820 aagattggga ttgtcccctg catattctcg gaccataatg ccttgaaatt agaactaaat 2880 cacaacaaga agtttggaag gacctcaaac acatggaggt taaggaccat cctgctaaaa 2940 gataaaaggg tcaaccagga aattaaggaa gaattaaaaa gattcatgga aactaatgag 3000 aatgaagata caaccgttca aaatctttgg gatgcagcaa aagcagtcct aagggggaaa 3060 tacatcgcaa tacaagcatc cattcaaaaa ctggaaagaa ctcaaataca aaagctaacc 3120 ttacacataa aggagctaga gaaaaaacag caaatagatc ctacacccaa gagaagaagg 3180 gagttaataa agattcgagc agaactcaac gaaatcgaga ccagaagaac tgtggaacag 3240 atcaacagaa ccaggagttg gttctttgaa agaattaata agatagataa accattagcc 3300 agccttatta aaaagaagag agagaagact caaattaata aaatcatgaa tgagaaagga 3360 gagatcacta ccaacaccaa ggaaatacaa acgattttaa aaacatatta tgaacagcta 3420 tacgccaaat aa 3432 // ID NC006583_159; SV 1; special; RNA; MAM; 261 BP. XX AC NC006583_159; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_159; NC006583_159. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..261 FT /organism="Canis familiaris" FT CDS 1..261 FT /protein_id="NC006583_159" FT /db_xref="trGEN:NC006583_159" FT /translation="MAFVSPGAPTLPLAPDLLVPGTRSPGPSPSLSPGERVKE FT RLAHTADLAPREHLLKLIDRMPRICQAVIQARGDLDGDKASVVKTTL" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '+' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..88 FT /number=1 FT /note="FIRST EXON; p-value: 0.955." FT exon 89..261 FT /number=2 FT /note="LAST EXON; p-value: 0.726." FT CONTIG join(NC_006583:7015918...7016005, FT 7016155...7016327) XX SQ Sequence 261 BP; 55 A; 87 C; 71 G; 48 T; other; atggccttcg tgagccctgg ggcacccacc ttgccactgg ctcccgacct ccttgtcccc 60 ggcacccgct cccccggccc cagccccagc ttgtctccag gggagagagt gaaagaaagg 120 ctggcccaca cagccgacct ggcccctcgt gaacatctat tgaaactgat tgatcgaatg 180 cctcgcatct gccaagctgt cattcaagcc aggggggatt tggacggaga caaggcgagc 240 gtcgtaaaaa cgactttgtg a 261 // ID NC006583_160; SV 1; special; RNA; MAM; 546 BP. XX AC NC006583_160; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_160; NC006583_160. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..546 FT /organism="Canis familiaris" FT CDS 1..546 FT /protein_id="NC006583_160" FT /db_xref="trGEN:NC006583_160" FT /translation="MVSKTAGEIRGSLTLREMLLSAVLGSTKQGLGIAEKAKA FT ATSTHRCSGLKVSLEIHVWEPQVSGPQKGLHLKAGSSERSLRRYTGGVLGRRR FT SQAVDSREGAGLCRERKEGGHCLCQAETWTCRVARHLLHVHNGSTEINFSEAR FT KKLAEVTTVVEERSKCSPSSPLHSRGGQRTAVTPLD" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '+' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..264 FT /number=1 FT /note="FIRST EXON; p-value: 0.378." FT exon 265..450 FT /number=2 FT /note="INTERNAL EXON; p-value: 0.085." FT exon 451..546 FT /number=3 FT /note="LAST EXON; p-value: 0.693." FT CONTIG join(NC_006583:7019219...7019482, 7020687...7020872, FT 7025764...7025859) XX SQ Sequence 546 BP; 148 A; 136 C; 172 G; 90 T; other; atggtcagca agacggcagg agagattcgg ggaagcctga ctctaagaga aatgcttctg 60 tctgccgtcc tcggaagcac aaagcaagga ctgggtatcg ctgagaaagc aaaagcagca 120 acaagcaccc acaggtgttc agggctgaag gtgtccctcg aaatacacgt gtgggagccc 180 caagtctcag gaccccagaa ggggctgcat ttgaaggccg ggtcttcaga gagatcgtta 240 agacggtata ctgggggtgt ccttggccgc aggcggtcac aagcagtgga tagccgtgaa 300 ggagcaggac tttgcaggga gaggaaggaa ggcggccact gcctgtgcca ggcggagacc 360 tggacatgca gggtggcccg gcacctactc catgtacaca atggcagcac tgaaattaat 420 ttctcagaag ccagaaaaaa attggcagag gtcactacgg tcgtagaaga gagatcaaag 480 tgctccccaa gcagccctct gcattctcgg ggaggacagc gcacagccgt caccccgctg 540 gactga 546 // ID NC006583_161; SV 1; special; RNA; MAM; 216 BP. XX AC NC006583_161; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_161; NC006583_161. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..216 FT /organism="Canis familiaris" FT CDS 1..216 FT /protein_id="NC006583_161" FT /db_xref="trGEN:NC006583_161" FT /translation="MQKKKHHITTDKVNVAIISALGSWFCGREDFWYSSYVKF FT VHPHKPSTPPPSRKWPDCCISKESEKTSPGFP" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '+' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..58 FT /number=1 FT /note="FIRST EXON; p-value: 0.548." FT exon 59..216 FT /number=2 FT /note="LAST EXON; p-value: 0.684." FT CONTIG join(NC_006583:7028356...7028413, FT 7029647...7029804) XX SQ Sequence 216 BP; 67 A; 57 C; 42 G; 50 T; other; atgcagaaga aaaagcatca tattaccact gacaaagtga atgtagctat catctctgcc 60 ctgggatcct ggttctgtgg acgagaagac ttttggtaca gcagctatgt caaatttgtc 120 caccctcata agccatcaac tccaccacca tccagaaaat ggcctgactg ctgcatctcc 180 aaggaaagtg agaaaaccag ccctggattc ccttaa 216 // ID NC006583_162; SV 1; special; RNA; MAM; 1293 BP. XX AC NC006583_162; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_162; NC006583_162. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..1293 FT /organism="Canis familiaris" FT CDS 1..1293 FT /protein_id="NC006583_162" FT /db_xref="trGEN:NC006583_162" FT /translation="MATINWDSKEQHRGDRQNTVLDENLADFEYQVNQHCDLV FT WRKLTACERHSAMEEEGEVSRARLGIDLQALREVVWVMGKMNCHQEWPQLPTS FT SEFWRETDIIIIASMDSVLTTLVRNGLKHRYADRLKAPPMVLVLLPGPGDGDT FT CAFAALCASVLLGPSQSLQTAAMATIAKLWKEPRCPTKDEWIKKMWFMYTMEY FT YSAIRNDKYPPFASTWMELEGIMLSEEAELLWISLADPVQAHTLLCPEEPPEQ FT DKEKERKRQGEKGKKKRTQVGPGQPCAQVGAGLGPPGAVQLPRGHPSTCEDTW FT QQQGAENRTLGQGFTACSAPCCFEPCLFQNQSSCIQSVVPPGFNPQHWNLADP FT LAVPATGDKAKLYYCLTSEGSREAIKQTFPQNVPVSAPDASAEGIGCAHLPGS FT WAGRYAQIVLIIYYCLCKYS" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '+' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..224 FT /number=1 FT /note="FIRST EXON; p-value: 0.324." FT exon 225..342 FT /number=2 FT /note="INTERNAL EXON; p-value: 0.038." FT exon 343..496 FT /number=3 FT /note="INTERNAL EXON; p-value: 0.002." FT exon 497..672 FT /number=4 FT /note="INTERNAL EXON; p-value: 0.001." FT exon 673..801 FT /number=5 FT /note="INTERNAL EXON; p-value: 0.442." FT exon 802..923 FT /number=6 FT /note="INTERNAL EXON; p-value: 0.024." FT exon 924..1237 FT /number=7 FT /note="INTERNAL EXON; p-value: 0.030." FT exon 1238..1293 FT /number=8 FT /note="LAST EXON; p-value: 0.190." FT CONTIG join(NC_006583:7048633...7048856, 7052864...7052981, FT 7072179...7072332, 7074295...7074470, 7078244...7078372, FT 7081744...7081865, 7082787...7083100, 7089175...7089230) XX SQ Sequence 1293 BP; 341 A; 331 C; 361 G; 260 T; other; atggccacca tcaattggga tagcaaggag cagcaccggg gggatcgcca gaacactgta 60 ttggatgaaa atctggctga ctttgaatac caagtgaatc aacactgtga tctggtatgg 120 agaaagctga cagcttgtga gaggcattct gcaatggaag aggaaggaga ggtgtccaga 180 gcacgactgg gcatagacct ccaggcactc agggaggtag tatgggttat gggaaaaatg 240 aactgccatc aggagtggcc tcaacttcca acttcatcag aattctggag ggagactgac 300 ataataataa ttgccagcat ggactcagtg ctcactacac ttgtaaggaa tggcttgaag 360 cacaggtacg ctgacagact caaagctcca cccatggtgc tggtccttct ccctgggcct 420 ggggacgggg acacctgtgc cttcgcagcc ctctgcgcct ctgtcctctt gggcccctca 480 cagagcctgc agacagcagc aatggccact atagccaaac tgtggaagga gcctcggtgt 540 ccaacgaaag atgaatggat aaagaagatg tggtttatgt atacaatgga atattactca 600 gctattagaa atgacaaata cccaccattt gcttcaacgt ggatggaact ggagggtatt 660 atgctgagtg aagaagcaga gctgctctgg atctcgctcg cagaccccgt gcaagcacac 720 acgctccttt gccctgagga gcctccagaa caagacaaag aaaaggagag aaaaagacag 780 ggagagaaag ggaagaagaa gcggactcaa gtggggcccg gccagccatg tgcccaggtg 840 ggcgcgggcc ttggcccccc gggggccgtg cagctgccca ggggccaccc gtccacgtgt 900 gaggacacat ggcagcagca gggggcagag aacaggactc tgggacaagg cttcacagct 960 tgctctgctc cctgctgctt tgagccctgc ctcttccaga accagtcctc ctgcatccag 1020 tctgtggtgc caccaggctt caacccgcag cactggaacc ttgcagatcc actggctgtc 1080 cctgcaactg gagacaaagc aaagctatat tattgcctaa cgtctgaggg gagcagggaa 1140 gccatcaagc agacctttcc tcaaaacgtc cccgtcagtg cacctgatgc cagtgctgag 1200 ggcataggat gtgctcatct ccctggttct tgggcaggaa gatatgctca aatagttctc 1260 atcatctatt actgtttatg caagtacagc tga 1293 // ID NC006583_163; SV 1; special; RNA; MAM; 1095 BP. XX AC NC006583_163; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_163; NC006583_163. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..1095 FT /organism="Canis familiaris" FT CDS 1..1095 FT /protein_id="NC006583_163" FT /db_xref="trGEN:NC006583_163" FT /translation="MKLDHTLAPYTKINSKWMKDLNVRQDSIKILEENTGSTL FT FELGHSNFLQDTSTKAKETKAKMNYWDFIKIRRFCTAKDTVNKTQRQPTEWEK FT IFSNDVSDKELVPKIYKELIKLNSKETNNPIMKWAKDMNRNLTEEDIDMANTH FT MRKCSASLAIREIQIKTTMRYHLTPEVQLSSGLEKPKERVFLETKKGFLEEIV FT FELGFRAQPRCHPGAAVTSTGSTDLEELKLYPERKFLLHYRAESKLQQISTFI FT VHIHQRTAYVLATDHPMGNLLAESVAFGDHGHLCVTSLGNQLCGPQKPGLSVG FT IECESSVRARHRAAGRLSAVDTGLCGNRSCATHIGTSGVNLCIVNESALHVAS FT AGFDDTS" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '+' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..510 FT /number=1 FT /note="FIRST EXON; p-value: 0.141." FT exon 511..611 FT /number=2 FT /note="INTERNAL EXON; p-value: 0.241." FT exon 612..822 FT /number=3 FT /note="INTERNAL EXON; p-value: 0.038." FT exon 823..940 FT /number=4 FT /note="INTERNAL EXON; p-value: 0.001." FT exon 941..1095 FT /number=5 FT /note="LAST EXON; p-value: 0.946." FT CONTIG join(NC_006583:7098979...7099488, 7101640...7101740, FT 7108178...7108388, 7118006...7118123, 7121764...7121918) XX SQ Sequence 1095 BP; 366 A; 258 C; 251 G; 220 T; other; atgaaactag accacactct tgcaccatat acaaagataa actcaaaatg gatgaaagat 60 ctaaatgtga gacaagattc catcaaaatc ctagaggaga acacaggcag cacccttttt 120 gaacttggcc acagtaactt cttgcaagat acatccacga aggcaaaaga aacaaaagca 180 aaaatgaact attgggactt catcaagata agacgctttt gcacagcaaa agatacagtc 240 aacaaaactc aaagacaacc tacagaatgg gagaagatat tttcaaatga cgtatcagat 300 aaagagctag ttcccaagat ctataaagaa cttattaaac tcaacagcaa agaaacaaac 360 aatccaatca tgaaatgggc aaaagacatg aacagaaatc tcacagagga agacatagac 420 atggccaaca cgcacatgag aaaatgctct gcatcacttg ccatcaggga aatacaaatc 480 aaaaccacaa tgagatacca cctcacacca gaggtacagc tcagcagtgg gcttgagaag 540 cccaaagaaa gagtatttct agagaccaag aaaggcttct tggaggaaat tgtgtttgag 600 ctgggattca gagcccaacc gagatgccat ccgggggcag ctgtcacatc tacaggatca 660 accgacttgg aggagctcaa gctgtatcct gaaagaaagt ttcttcttca ttacagggca 720 gagtcaaagt tgcaacagat ttctaccttt attgtccaca ttcatcaacg aacagcctat 780 gtgctggcta cagaccaccc tatgggcaac ctattggcgg agagtgtggc ctttggggac 840 catgggcatc tctgtgtcac gtcactgggg aaccagcttt gtggcccaca gaagccagga 900 ctgtctgttg gcatcgaatg tgagagcagc gtgagggccc ggcaccgtgc agcgggaagg 960 ctcagcgctg tcgacacagg gctctgtgga aaccgctcct gtgccactca catcgggacg 1020 agtggggtta atctctgcat cgtcaatgaa tcagccctgc acgtggcatc agcaggcttc 1080 gacgacacct cgtga 1095 // ID NC006583_164; SV 1; special; RNA; MAM; 2004 BP. XX AC NC006583_164; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_164; NC006583_164. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..2004 FT /organism="Canis familiaris" FT CDS 1..2004 FT /protein_id="NC006583_164" FT /db_xref="trGEN:NC006583_164" FT /translation="MTTGKSPLHSFRRVCEDTDQQQWMLPGMMSVPSVQGRRS FT PNPQVAVPWPHLHPFLCQKVVVALNDHSDVQKVQLPKVTGERRAKGSTPARKV FT LCGLMQRVTTPLSASVIGTWGSVLIEPQQEDEWLTAGAQDTVPSAGICGRAKA FT NTASKGEVTPCRVTLTLAGGASENPGKPISEASSTVAARRCHQPSCECQGLHE FT ELEKPPTSLGDAGSPRPSTSVPREAATSSPPGLGLRAATGHLVGWTIRKRTGH FT RGSYLRAVPPPPSPELASEDDAQLDLKCMENSKEWLLELPGYEYVYCGVLTAP FT GSGSRGSEGVSSTVWVPSGRKAMVVVGLWLVAVRERDVSLAAPSSGQTGEARR FT VPCRAPSRPSLRVPWPSSGIAASALEKEALVRAARDDTRGKAESDRTHSATRK FT PPSPQPVATICPFTGLTPGYDPSTTAHSPLLESEPSLPLEVHPPPSTGPEPPA FT LTPQRWLPFPVNVAWQPSTDYHVACSLSSIPLQWWFFESPVSVEISVLLVLGP FT SDLDPSSSAFRPGLNYTICFPGSPAFGQQTVPGPSGPPKSIFQGELVLTSAWE FT DEKELKKEVKRWRRSLGKGERINQVHTESQCPTGSLLHEGQLGHCGVLRGEMT FT CTDSDPRAFCAAWGMLHRLPDSTYSASHGRGLSSPDVMLIAADDQ" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '+' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..10 FT /number=1 FT /note="FIRST EXON; p-value: 0.327." FT exon 11..91 FT /number=2 FT /note="INTERNAL EXON; p-value: 0.447." FT exon 92..220 FT /number=3 FT /note="INTERNAL EXON; p-value: 0.020." FT exon 221..413 FT /number=4 FT /note="INTERNAL EXON; p-value: 0.225." FT exon 414..447 FT /number=5 FT /note="INTERNAL EXON; p-value: 0.132." FT exon 448..564 FT /number=6 FT /note="INTERNAL EXON; p-value: 0.698." FT exon 565..714 FT /number=7 FT /note="INTERNAL EXON; p-value: 0.144." FT exon 715..741 FT /number=8 FT /note="INTERNAL EXON; p-value: 0.266." FT exon 742..822 FT /number=9 FT /note="INTERNAL EXON; p-value: 0.002." FT exon 823..857 FT /number=10 FT /note="INTERNAL EXON; p-value: 0.001." FT exon 858..1043 FT /number=11 FT /note="INTERNAL EXON; p-value: 0.004." FT exon 1044..1208 FT /number=12 FT /note="INTERNAL EXON; p-value: 0.025." FT exon 1209..1521 FT /number=13 FT /note="INTERNAL EXON; p-value: 0.608." FT exon 1522..1669 FT /number=14 FT /note="INTERNAL EXON; p-value: 0.684." FT exon 1670..1790 FT /number=15 FT /note="INTERNAL EXON; p-value: 0.229." FT exon 1791..2004 FT /number=16 FT /note="LAST EXON; p-value: 0.550." FT CONTIG join(NC_006583:7130208...7130217, 7130391...7130471, FT 7138944...7139072, 7142682...7142874, 7147596...7147629, FT 7152174...7152290, 7152915...7153064, 7160479...7160505, FT 7165995...7166075, 7168283...7168317, 7183999...7184184, FT 7184305...7184469, 7198089...7198401, 7201542...7201689, FT 7203207...7203327, 7213639...7213852) XX SQ Sequence 2004 BP; 407 A; 608 C; 594 G; 395 T; other; atgacaacag gtaaaagtcc attgcacagc ttcagaaggg tctgtgaaga cacagaccaa 60 cagcagtgga tgctacctgg gatgatgtca gtgccttctg tgcaaggccg ccgctcaccc 120 aaccctcagg tagcagtgcc gtggcctcat ctacacccgt ttctctgcca gaaggttgtc 180 gtcgcgctaa atgaccatag cgatgtccag aaagtgcaac ttccgaaggt caccggagag 240 aggagagcca agggaagcac cccagcacgg aaggtgctgt gcgggctcat gcaaagggtc 300 accactccgc tctcggcgtc tgtaattggc acttggggat cagtattaat tgagccacaa 360 caggaagatg agtggttgac ggcaggagca caggacactg tgccgtctgc tggcatctgt 420 gggcgagcaa aagcaaacac ggcctcgaaa ggtgaagtca ccccctgtcg ggtgacattg 480 acgcttgccg gcggggcatc tgagaaccca gggaagccca tctcagaagc ttccagcacc 540 gtggctgcga ggcgctgcca tcagccgtcc tgcgaatgcc agggccttca tgaagagctg 600 gagaagccac cgacttccct tggagacgcg ggctctcccc ggccatccac ctctgtcccg 660 cgggaggcgg ccacgtcttc acctcccggg ctgggcctgc gagcggcgac gggacatctg 720 gtgggctgga ccattaggaa gcgaactggt catcggggtt cctatctgcg tgctgtgccc 780 cctcccccat ccccggagct ggcctctgag gacgacgcac agctggacct taaatgtatg 840 gagaattcta aagaatggct cctggaactg ccgggttatg aatatgtata ctgtggtgtc 900 ctgactgctc ccggctcggg cagcagaggt tctgagggtg tttcctccac ggtctgggtt 960 cccagtggcc gcaaggccat ggttgtggtg ggactgtggc tggtggcggt gcgggagcgg 1020 gacgtgtcgc tcgctgcacc ttcgtcggga cagaccggag aggcccggcg agtgccgtgc 1080 agggctccga gccggcccag cctgcgggtg ccgtggccgt cctccgggat cgccgcctcc 1140 gcgctcgaga aagaggcact tgtccgggct gcccgagacg acacacgcgg aaaggccgag 1200 agcgaccgga cacactctgc caccagaaaa cccccttctc ctcagcctgt ggccaccatc 1260 tgccccttca ctggcctcac acccggctat gaccccagca ccactgccca cagccccctg 1320 ctggagagcg agccctcttt gcctctggag gtgcaccccc cccccagcac ggggcctgaa 1380 ccacctgccc tcacgccaca gcgctggcta cccttccctg tgaacgtagc ctggcagccg 1440 tctactgact accacgtggc ctgctccctg agctctatcc cactccagtg gtggttcttc 1500 gagagtccag tgtccgtgga gatatctgtg cttctggttc ttgggccctc agatttggac 1560 cccagttctt cagccttcag acctggattg aattacacca tctgctttcc tggttctcca 1620 gcttttggac aacaaacagt tcctgggcct tctggtcctc caaaatcaat cttccaaggt 1680 gagttggtgc tgacctcagc ctgggaggat gagaaggaat tgaagaagga agtgaagagg 1740 tggagaagaa gtctaggcaa aggagaaaga ataaaccaag tccatacaga atcacagtgc 1800 ccaacaggat cccttctcca tgaagggcag ctgggccatt gtggggttct gcgtggggaa 1860 atgacttgca ccgactccga tcctcgggcc ttctgcgcgg cctgggggat gctccacagg 1920 ctccctgact cgacatacag tgcatctcat gggagaggac tgagctctcc ggatgtcatg 1980 cttattgctg cagatgacca gtga 2004 // ID NC006583_165; SV 1; special; RNA; MAM; 3324 BP. XX AC NC006583_165; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_165; NC006583_165. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..3324 FT /organism="Canis familiaris" FT CDS 1..3324 FT /protein_id="NC006583_165" FT /db_xref="trGEN:NC006583_165" FT /translation="MYSPRNICGSLVLRAPPGHARWCWAADKGQQVHRKVAGW FT KDLPQGSAYVPEEELKAAEIDEENVEEDGLSLDIQEGDYVCNEDAEIKEAQSY FT QNSPVSTATNQDAGYGSPFSENSDQLVHFKSSSSREEKEEPQAADSVSYPQDS FT LAQIKAVYANLFSESCWSSLALDLKKSGSATSTNDVGPKESTTPAPTPPTSTA FT GTSGTTASTPSSGSGSGSGGGGGGGSGYDWHQAALAKTLQQTSSYGLLPEPSL FT FSTVQLYRQNNKLYGSVFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDN FT RDKDSEKTKRWSKPRKRSLMEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMIK FT TKHYQKVPLKEPVPAITKLVPSTKKRALQDLASPCSPEPAGLATDAAPSEAAK FT DQKTANPYVTPNNRYGYQNGASYTWQFEARKAQILKCMECGSSHDTLQQLTAH FT MMVTGHFLKVTSSASKKGKQLVLDPVVEEKIQSIPLPPTTHTRLPASHIKKQP FT DSPAGSVPAEDKKEPEKDKVPPAASEAEKKVKEESEDAPEKFEPTTLYQYLRE FT EDLDDSPKGGVDILKSLENTVSTAISKAQNGAPSWGGYPSIHAAYQLPGAVKP FT LPAMQSVQMQPSYAGGVKPLSSEHSALLHSPGSLTPPPHKSNVSAMEELVEKV FT TGKVSVKKEERPAEREKGSPAKAVSPVAKENKDFPRAEEGGGKVQQKKVPDAE FT VAKAKKEGVPDAHTPNGTEPLKAKVTNGCNNLGIITDHSPEPSFINPLSALQS FT IMNTHLGKVSKPVSPSLDPLAMLYKISNSMLEKPVYPATPIKQADAIDRYYYE FT NSDQPIDLTKSKSKPLVSGAADSVASPLRESALMDISDMVKNLTGRLTPKSST FT PSTVSEKSDADGSSFEEALDELSPVHKRKGRQSNWNPQHLLILQAQFASSLRE FT TPEGKYIMSDLGPQERVHISKFTGLSMTTISHWLANVKYQLRRTGGTKFLKNL FT DTGHPVFFCNDCASQFRTASTYINHLETHLGFSLKDLSKLPLNQIQEQQNVSK FT VLASKALGPVGAAEDELGSTFQCKLCNRTFASKHAVKLHLSKTHGKSPEDHLI FT YVTELEKQ" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '-' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..139 FT /number=1 FT /note="FIRST EXON; p-value: 0.254." FT exon 140..3324 FT /number=2 FT /note="LAST EXON; p-value: 0.989." FT CONTIG join(NC_006583:7235626...7235488, FT 7231103...7227919) XX SQ Sequence 3324 BP; 788 A; 1056 C; 991 G; 489 T; other; atgtactccc cacggaatat ctgtgggtca ctggtgctca gagcacctcc aggacatgct 60 cgctggtgtt gggcagctga caaagggcag caggtgcatc gcaaggtggc ggggtggaag 120 gacctgcccc agggctcagc ttatgttccc gaggaagaac tgaaggcagc agaaatagat 180 gaagagaacg tggaggagga tgggctgtct ctggacatcc aggaaggcga ctacgtgtgc 240 aatgaggacg cggagatcaa ggaagcccag agctaccaga actctcccgt cagcactgcg 300 acgaatcagg acgcgggcta cgggtcgccc ttcagcgaga acagcgatca gcttgtccac 360 ttcaaaagct catcctccag agaagagaag gaggagccgc aggctgcaga cagcgtctcc 420 tacccccagg acagcttggc gcagatcaag gccgtgtatg ccaacttgtt ctctgagtcc 480 tgctggtcca gcttagcttt ggatttgaag aagtcgggtt cagccaccag caccaatgat 540 gtgggcccga aggagagcac cacgcctgcg cccacgcccc ccaccagtac ggcgggcacc 600 tcgggcacca cggcaagcac ccccagctct ggctcaggct cgggctctgg gggaggcggg 660 ggcggcggct cagggtacga ctggcatcag gccgccctgg ccaagacgct gcagcagacg 720 tcgtcgtacg ggctgctccc tgagcccagc ctcttcagca ccgtgcagct ctacaggcag 780 aacaacaagc tctatggctc tgtgttcaca ggcgccagca agttccgctg caaggactgc 840 agtgccgcct atgacacgct agtggagctg acagtgcaca tgaatgagac cgggcactac 900 cgcgacgaca acagggacaa ggactctgag aagaccaagc ggtggtccaa gccccggaag 960 cgctcactga tggagatgga aggcaaggag gacgcccaga aggtgctcaa gtgcatgtac 1020 tgtggccact cctttgagtc cctgcaagac ctgagcgtcc acatgatcaa gacaaagcat 1080 taccagaaag tgcctctgaa ggagccagta ccggccatca ccaaactggt cccttccacc 1140 aagaagcgtg ccctgcagga cctggcgtca ccatgttccc ccgagccggc tgggctggcc 1200 acggacgctg cgcccagcga ggcagccaag gaccagaaga ccgccaaccc ctacgtgacg 1260 cccaacaacc gctacggcta ccagaacggc gccagctaca cctggcagtt cgaggcccga 1320 aaggcgcaga tcctcaagtg tatggagtgc ggcagttccc atgacaccct gcagcagctc 1380 actgcccaca tgatggtcac cggccacttc ctcaaggtca ccagctcggc ctccaagaaa 1440 gggaagcagc tggtgctgga ccccgtggtg gaagagaaga tccagtcgat cccactgccc 1500 ccgaccacac acacccggct gcctgcctcc cacatcaaga agcagcccga ctctcccgcg 1560 gggtctgtgc ccgctgagga caagaaggag cccgagaagg acaaggtgcc accggcggcc 1620 agcgaggcgg agaagaaggt caaggaggag agcgaggacg cccccgagaa gtttgagccc 1680 accaccctgt atcagtacct ccgcgaggag gacctggacg acagccccaa gggtggggtg 1740 gacatactga agtccctgga gaacacagtg tccacagcca tcagcaaggc ccagaacggc 1800 gcgccgtcgt ggggcggcta ccccagcatc cacgcggcct accagctgcc cggtgccgtg 1860 aagccgctgc cggccatgca gagcgtgcag atgcagccat cctacgcggg cggcgtgaag 1920 ccgctgtcgt cggagcacag cgcgctgctg cactcacctg ggagcctcac gccgccaccg 1980 cacaagagca acgtgtcggc catggaggag ctggtggaga aggtgaccgg caaggtcagc 2040 gtgaagaagg aggagcggcc tgccgagagg gaaaagggct ctccggccaa ggccgtatcc 2100 cccgtggcca aagagaacaa ggacttcccc cgggccgagg agggcggtgg caaagtgcag 2160 cagaagaagg tccccgacgc cgaggtggcg aaggccaaga aggagggtgt gcctgacgcg 2220 cacacgccca acggcactga gcccctgaag gccaaagtca ccaacggctg taacaacctg 2280 gggatcatca ccgaccactc gcccgagccc tccttcatca acccgctgag tgcgctgcag 2340 tccatcatga acacccacct gggcaaggtg tccaagcccg tgagcccctc gctggacccg 2400 ctggccatgc tgtacaaaat cagcaacagc atgctggaga agccggtcta ccctgccacc 2460 cccatcaagc aggccgacgc catcgaccgc tactactatg agaacagtga ccagcccatc 2520 gacctgacca agtccaaaag caagcccctg gtctccggcg cggccgactc cgtggcgtcg 2580 cctctccggg agagtgcgct catggacatc tccgacatgg tgaagaacct cacgggccgc 2640 ctcaccccca agtcctccac gccgtccacc gtgtccgaga agtccgatgc agacggcagc 2700 agctttgagg aagcgctgga cgagctgtcg cccgtgcaca agaggaaggg gcggcagtcc 2760 aactggaacc cccagcacct gctcatcctg caggcccagt tcgcctcaag cctgcgggag 2820 acgccagagg ggaagtacat catgtcggac ctgggtcccc aggagcgggt gcacatctcc 2880 aagttcacag ggctgtccat gaccaccatc agccactggc tggccaacgt gaagtatcag 2940 ctgaggagga cagggggaac aaagttcctg aagaacctgg acacagggca ccctgtgttc 3000 ttttgcaacg attgtgcctc tcagttcaga actgcttcca cgtacataaa tcacctagag 3060 acacacttag gcttcagctt gaaggatctc tctaagctgc cgctaaatca gattcaagaa 3120 cagcagaatg tttcgaaagt cctggccagc aaagctctgg gcccggtcgg ggctgccgag 3180 gacgagttgg gctccacatt ccaatgcaag ctttgcaacc ggacctttgc gagcaagcac 3240 gcagtcaaac tgcacctcag caagacccac ggcaagtccc ccgaggacca cctgatctat 3300 gtgacagagt tggaaaaaca atag 3324 // ID NC006583_166; SV 1; special; RNA; MAM; 819 BP. XX AC NC006583_166; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_166; NC006583_166. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..819 FT /organism="Canis familiaris" FT CDS 1..819 FT /protein_id="NC006583_166" FT /db_xref="trGEN:NC006583_166" FT /translation="MPNAKHRDVTFSVPASTPRKDGSAVWQPDESGPTHPMSA FT NRPQNTGFQPGIPDHRHRKGCTSERAAGYGQLVSGRGSDTRPSYRTRNRFYRE FT LVLLEDSDNYYSFHRRIRSLFTKIPVKYQYHHHHHDHHHPDHHHHHGHDLHPS FT PPSSPSPSSSPITTTIITIITITITTIIITIIDNHYHEHHQHHHYHHLHPSPS FT LQSSPSSPSSPSSSPITIIITTMTIITITTIITNTTIITSIIITIITIITITI FT ITIMTIIITSITIIITIITTI" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '+' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..192 FT /number=1 FT /note="FIRST EXON; p-value: 0.108." FT exon 193..278 FT /number=2 FT /note="INTERNAL EXON; p-value: 0.117." FT exon 279..357 FT /number=3 FT /note="INTERNAL EXON; p-value: 0.083." FT exon 358..819 FT /number=4 FT /note="LAST EXON; p-value: 0.930." FT CONTIG join(NC_006583:7239968...7240159, 7245686...7245771, FT 7249210...7249288, 7257154...7257615) XX SQ Sequence 819 BP; 239 A; 294 C; 107 G; 179 T; other; atgcccaatg ccaagcatag ggatgtcacg ttctcggtcc ccgcctccac accgaggaag 60 gacggcagcg ctgtctggca gccggacgag tctgggccta cacacccaat gtcagcaaac 120 cggccccaaa acaccgggtt ccaacctggt atccctgacc atcgacaccg gaaaggatgt 180 acatcagaga gggcagcagg ctacgggcag ctggtgtcag ggcgaggctc cgacacgcgc 240 ccatcctacc gcacacggaa ccgtttctat cgggaacttg ttctcctgga ggacagtgat 300 aattactatt ctttccacag acgaattagg tctctgttca ctaaaatccc agtgaagtac 360 cagtatcacc accatcacca tgaccatcat caccctgacc atcatcatca ccatggccat 420 gatcttcacc catcaccacc atcatcacca tcaccatcat cttcacccat caccaccacc 480 attatcacaa tcattactat caccatcacc accatcatca tcactattat cgacaatcat 540 tatcacgagc atcaccagca tcaccactat catcatcttc atccatcacc atcattacaa 600 tcatcaccat catctccatc atcaccatca tcttcaccca tcaccatcat tatcaccacc 660 atgaccatta tcaccatcac caccatcatc accaacacca ccatcattac cagcatcatc 720 atcactatta tcacaatcat caccatcacc attatcacta tcatgaccat catcatcacc 780 agcatcacca tcatcattac cattatcacc accatctaa 819 // ID NC006583_167; SV 1; special; RNA; MAM; 429 BP. XX AC NC006583_167; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_167; NC006583_167. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..429 FT /organism="Canis familiaris" FT CDS 1..429 FT /protein_id="NC006583_167" FT /db_xref="trGEN:NC006583_167" FT /translation="MPVTLFLGIPQLPNPTPTCYQTPLAKYRCRIGSSHIGCP FT KISKNWPTGSLNHSVPGEKAYMDSSLLSVPSCVFLDSCLDEDVVSYAAACPDG FT SLLRASLEYPWYEVVRSILLGPGLRTRAPLLTPEERIPLKVNEGVAVEPY" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '-' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..223 FT /number=1 FT /note="FIRST EXON; p-value: 0.619." FT exon 224..338 FT /number=2 FT /note="INTERNAL EXON; p-value: 0.190." FT exon 339..429 FT /number=3 FT /note="LAST EXON; p-value: 0.283." FT CONTIG join(NC_006583:7277152...7276930, 7274938...7274824, FT 7271065...7270975) XX SQ Sequence 429 BP; 94 A; 119 C; 114 G; 102 T; other; atgcctgtga cccttttcct gggcatccca cagctgccga acccaacccc cacatgctat 60 caaactccac tggcaaagta cagatgccga ataggtagct cccacatcgg gtgccctaag 120 atttctaaga attggccaac tggatcattg aatcacagtg ttccagggga gaaagcctac 180 atggacagca gtttgctttc tgtaccgagt tgcgtgttct tggattcctg tttggatgaa 240 gatgtggtct cctacgctgc cgcctgccct gatgggagcc tcctgcgggc tagcctggag 300 tacccctggt acgaggtagt gcgcagcatc ctgcttggcc cggggctgcg cacgcgtgcg 360 cctctgctaa caccagagga gagaattcct ttaaaagtta atgaaggagt tgccgtggaa 420 ccctattag 429 // ID NC006583_168; SV 1; special; RNA; MAM; 1956 BP. XX AC NC006583_168; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_168; NC006583_168. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..1956 FT /organism="Canis familiaris" FT CDS 1..1956 FT /protein_id="NC006583_168" FT /db_xref="trGEN:NC006583_168" FT /translation="MEERALWYLEQVLHRTNRKGFSERNQENNKRLTWAQAAR FT AGDAHPRPRPPPWTAHQIHVIRYFVMIMQLEVGRAAFTTRKRCHFRIQHLPSS FT LTLSYNWVLNLNIRFYSLTTLEASDLISKCQVQPPAFGGLFQRALAAEQQLRP FT PAHAPSRGSRKHRPPRPPRPPRPPRPVGASPAAGKRREVSPPHAPAQLREPLD FT VGAEPSRAERPGAGRDPGRRRRRQRAEARAMLRLAPAGARAIVDMSYARHFLD FT FQGSDIPRAMQKLAVTRLSPNFREAVTLLRDCPVALPGDRDLLVRNRADRERA FT GRKLRRLGNVLWRKEAEDRAGFSCALQVGSRRAMAEPVVGFVGVNASDINYSA FT GRYDPSVKTPFDVGFEGVGEVVALGLSASARYTVGQAVAYMAPGSFAEYTVVP FT ASAAAPVPSVKPEYVTLPVSGTTAYISLNELGGLSEGKKVLVTAAAGGTGQFA FT VQLAKKAKCHVIGTCSSDKKSAFLKSIGCDRPINYHTEHVSTVLKQEYPTGVD FT VVYESVGGAMFDLAVDALAIKGRLIVIGFVSGYQTPTGLSPVKAGTLPAKLLK FT KSASVQGFFLNHSLSKYQAAMDHLLKMYAGGDLVCEVDLGDLSVEGRFRGLES FT VFRAVDYMYMGKNTGKIVVELPRSVNSKL" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '+' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..58 FT /number=1 FT /note="FIRST EXON; p-value: 0.458." FT exon 59..160 FT /number=2 FT /note="INTERNAL EXON; p-value: 0.444." FT exon 161..342 FT /number=3 FT /note="INTERNAL EXON; p-value: 0.249." FT exon 343..576 FT /number=4 FT /note="INTERNAL EXON; p-value: 0.030." FT exon 577..598 FT /number=5 FT /note="INTERNAL EXON; p-value: 0.032." FT exon 599..893 FT /number=6 FT /note="INTERNAL EXON; p-value: 0.475." FT exon 894..1031 FT /number=7 FT /note="INTERNAL EXON; p-value: 0.488." FT exon 1032..1956 FT /number=8 FT /note="LAST EXON; p-value: 0.906." FT CONTIG join(NC_006583:7291446...7291503, 7295856...7295957, FT 7298911...7299092, 7302343...7302576, 7302973...7302994, FT 7305884...7306178, 7306573...7306710, 7312422...7313346) XX SQ Sequence 1956 BP; 388 A; 569 C; 582 G; 417 T; other; atggaggagc gtgctttgtg gtaccttgag caggtgctcc acagaacaaa tagaaagggc 60 ttttccgaga ggaaccaaga aaacaataag aggctgacgt gggcgcaggc tgcccgggcc 120 ggggacgctc acccccggcc gcggcccccg ccgtggacag ctcaccaaat ccacgttatt 180 cgatattttg taatgataat gcagttggaa gttggtcgtg ccgcgtttac tacgaggaaa 240 aggtgccatt ttaggatcca gcatctcccc tcctccctta cactgagcta caactgggtg 300 ttgaatctaa acatccgttt ctacagcttg acaacactgg aggctagtga ccttatttcc 360 aagtgtcagg ttcagcctcc cgcctttgga ggacttttcc agcgcgctct ggccgccgag 420 cagcaacttc gtcccccagc gcacgccccc tcccgaggca gcaggaagca ccggcctccc 480 cggcctcccc ggcctccacg gcctccccgg cccgtcggcg cttctcccgc cgccgggaag 540 cgccgcgaag tttctccgcc gcacgcgccg gcccagctta gagaaccgct tgatgtaggc 600 gccgagccga gccgagccga gcggcccggg gctgggcgcg accccggccg gcggcggcgc 660 agacagcggg cagaggcgcg ggccatgctg cggctggcgc ccgccggggc ccgagccatc 720 gtggacatgt cgtacgcccg ccacttcctg gacttccagg gctccgacat cccccgcgcc 780 atgcagaagc tggcggtgac ccggctgagc cccaacttcc gcgaggccgt caccctgctc 840 cgggactgcc cggtggcgct ccccggggac cgagacctcc tcgtccggaa ccgtgcggac 900 cgggagcggg ctggacgcaa actgcgacgt ttaggtaacg tgctttggag gaaggaggcc 960 gaggaccggg ctggcttttc ctgcgcgctc caggttggca gccgccgcgc aatggcggag 1020 cctgtcgttg gatttgtcgg tgttaatgca tctgacatca actattcagc tggccgatac 1080 gacccttcag tcaagacccc ctttgatgta ggttttgaag gtgtgggaga ggtggtggcc 1140 ttaggcctct ctgctagtgc caggtacact gtgggccaag ctgtggcata catggcaccc 1200 ggctcttttg ctgagtatac tgtggtgcct gcgagtgccg cagctccggt gccctccgtg 1260 aaacctgagt atgtcaccct gccagtaagt ggtaccaccg catatatcag cctcaacgag 1320 ctcggaggac tgtcagaagg gaaaaaagtt ctggtgacag cagcagctgg ggggacaggc 1380 cagtttgctg tgcagcttgc aaagaaggcc aagtgccatg ttattggaac ctgctcttct 1440 gacaaaaagt ctgcttttct gaaatcgatt ggctgtgatc gtcccatcaa ctatcacact 1500 gagcatgtca gtactgtcct gaagcaggag taccccacag gtgtcgatgt ggtgtatgaa 1560 tccgtcgggg gagccatgtt tgacttggcc gtagatgcct tagctatcaa agggcgcttg 1620 atagtaattg ggtttgtctc tggctaccaa actcctactg gcctttcgcc tgtgaaagca 1680 ggaacattac cagccaaact gctgaagaaa tctgccagcg tccagggctt cttcttgaac 1740 cattcccttt ctaagtatca agcagccatg gaccacttgc tcaagatgta tgcgggtgga 1800 gacctggttt gtgaggtgga cctcggagat ctgtctgtgg agggcaggtt tcgtggcctg 1860 gagtctgtat tccgggctgt tgattatatg tacatgggaa aaaacactgg aaaaattgta 1920 gttgaattac ctcgctctgt caacagtaag ctgtga 1956 // ID NC006583_169; SV 1; special; RNA; MAM; 282 BP. XX AC NC006583_169; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_169; NC006583_169. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..282 FT /organism="Canis familiaris" FT CDS 1..282 FT /protein_id="NC006583_169" FT /db_xref="trGEN:NC006583_169" FT /translation="MKYEQSANGAHSFLQEGDLFKSRETQYAPCYSKRVPRSS FT RIGITREKQTQAPPGPAASGPASRQVTCVQLFLPLACVYVHDSPESAGFRFYF FT R" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '-' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..35 FT /number=1 FT /note="FIRST EXON; p-value: 0.929." FT exon 36..207 FT /number=2 FT /note="INTERNAL EXON; p-value: 0.789." FT exon 208..282 FT /number=3 FT /note="LAST EXON; p-value: 0.700." FT CONTIG join(NC_006583:7321759...7321725, 7320295...7320124, FT 7319298...7319224) XX SQ Sequence 282 BP; 62 A; 83 C; 81 G; 56 T; other; atgaagtatg agcagagtgc taatggagcc cacagctttt tacaagaggg ggatctcttc 60 aaaagcaggg agacccagta cgccccctgc tactcgaagc gcgttccccg gagcagccgc 120 atcggcatca cccgggagaa gcagactcag gccccacctg gacctgcggc atcaggacct 180 gcatcgcgac aggtgacgtg tgtgcagctc ttcctgccgc tggcatgtgt gtacgtccac 240 gacagccctg agtctgctgg attcagattc tatttcaggt ag 282 // ID NC006583_170; SV 1; special; RNA; MAM; 1290 BP. XX AC NC006583_170; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_170; NC006583_170. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..1290 FT /organism="Canis familiaris" FT CDS 1..1290 FT /protein_id="NC006583_170" FT /db_xref="trGEN:NC006583_170" FT /translation="MLECASWCVFVPEGDPGPVVTYMQAPHTGTVWTCPWLPG FT EKPGPARIFSSACGAATRANQPGTGASGRRLQPGPSSLYLALQPLTGVFTGTS FT PPCTAYLHGRPPQGQDHEQAKGVQSLGSQLCPGHGAGDKQGDEQGDERGDDHQ FT EAVLDHHIRCGVLVLALRCPPITPGEHAALVPGNVATPPPCGDSTVRCYFRGR FT GGCSRLQAPAEPALDCFCNIGIPVLCAHSQRSHLSSEAVGCGVGSGRDPSPMW FT SALAGPGAVLAQPQPEWVTSIPTDGMGLSSRAGIILALQMTNHPDDRDTARSQ FT QSANWETGPSLDHAGTLILDFCALELSNTCLLFTSHQAHGHRDHLIIQDILKI FT LNWMISAEFLLPYEDPCGHSVQLKILNRIFRVLFAHWVTHSQALVCGRGVFGW FT NIAVYTTRMSRQRTIAKTC" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '+' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..115 FT /number=1 FT /note="FIRST EXON; p-value: 0.462." FT exon 116..300 FT /number=2 FT /note="INTERNAL EXON; p-value: 0.364." FT exon 301..428 FT /number=3 FT /note="INTERNAL EXON; p-value: 0.632." FT exon 429..608 FT /number=4 FT /note="INTERNAL EXON; p-value: 0.899." FT exon 609..893 FT /number=5 FT /note="INTERNAL EXON; p-value: 0.548." FT exon 894..1030 FT /number=6 FT /note="INTERNAL EXON; p-value: 0.004." FT exon 1031..1113 FT /number=7 FT /note="INTERNAL EXON; p-value: 0.139." FT exon 1114..1290 FT /number=8 FT /note="LAST EXON; p-value: 0.383." FT CONTIG join(NC_006583:7324385...7324499, 7324949...7325133, FT 7326020...7326147, 7326703...7326882, 7330000...7330284, FT 7342963...7343099, 7353031...7353113, 7364903...7365079) XX SQ Sequence 1290 BP; 262 A; 387 C; 392 G; 249 T; other; atgctcgagt gtgcatcttg gtgtgtgttt gtgcccgaag gagacccagg tcctgtggtc 60 acctatatgc aggcaccaca cactgggacc gtgtggacat gcccctggct accgggtgag 120 aagccaggcc ctgcacgcat cttcagctcc gcctgtggag cagccaccag agcaaaccag 180 ccgggtactg gggcctctgg gcggcggctg caaccagggc ccagctccct gtacctggcc 240 ctgcagcctc tgacaggtgt cttcacgggg acctcacctc catgcacggc ctatctccat 300 ggaagacctc cccagggaca ggaccatgaa caggcaaagg gggtacaaag cctggggagc 360 cagctctgcc caggccacgg ggcgggggat aagcaggggg atgagcaagg ggatgagcga 420 ggggatgacc accaggaggc cgtcctagac catcacatcc ggtgtggggt gctggtgctg 480 gccctccgct gccccccaat aacccccggt gaacatgcag cgctggtccc cggcaacgtg 540 gccacaccgc cgccgtgcgg ggacagcact gttcgctgtt acttccgcgg gcgtggcggc 600 tgctcaaggc tgcaggcccc ggcggagcca gcactggatt gcttttgcaa cattggaatt 660 cccgtcctgt gtgcccacag ccagcgcagc catctgtcca gtgaggctgt tggctgtggc 720 gtgggtagtg gacgagatcc atcccccatg tggagtgccc tggcgggtcc aggggccgtg 780 ttagcacagc cccagccaga gtgggtcacg agcataccca ctgacgggat gggtttgtca 840 tcaagggcag gcattatttt agctcttcag atgaccaacc acccggatga cagggacaca 900 gcacggagtc agcagtctgc aaactgggag acagggccct cgctggacca tgctggcacc 960 ctgatcttgg atttctgcgc tctggaactg agcaatactt gtttgctgtt cacaagccac 1020 caggcccatg gacatcggga ccacctgata atccaggaca ttctcaagat ccttaactgg 1080 atgatatctg cagagttcct tttgccatac gaggaccctt gcggtcactc tgtccagctc 1140 aagatcctaa accgcatctt cagagtcctc tttgctcatt gggtgacaca ctcacaggcg 1200 ctggtgtgcg gccgtggcgt ctttgggtgg aacattgccg tgtacaccac gagaatgtca 1260 agacagcgaa caatagcaaa aacgtgttga 1290 // ID NC006583_171; SV 1; special; RNA; MAM; 1227 BP. XX AC NC006583_171; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_171; NC006583_171. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..1227 FT /organism="Canis familiaris" FT CDS 1..1227 FT /protein_id="NC006583_171" FT /db_xref="trGEN:NC006583_171" FT /translation="MGVDMCPPPPPRGWQLLGLSLFASCRGLCHWLAGVLTPC FT GLNHFPGRIDTQTHGLPDSQNLNLPQEKSHAAGRQAQGSSWLIPGPWSRTLSV FT AAKSGRAHYSPSGARHGPELLIAHRSIFIPFLLESASGLHTIRLPGPPPQWPV FT TMRRAHSGESADEDPLTELSEAGPNAGGKDKQSPPRLGDGCAQLLARLPAARL FT PQPLLLLVLAYMWSECGGPARLPSKCSSQATRQAEPSQWAGARSLVAQSESDG FT GLEGPRLDTDARMDTLYCPGTKEPAGPLTQTLGLGGEHQSRVKARAPATEEVK FT HRPSLDSGRGISQAFGDLAPLAAPLHARGAVHTRPLHPYRVAKENSRLFLEAQ FT EDPARNKASFGPRTLAAGSRWILPSLPREPASLRCHTANLRLSKNNNEKNC" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '-' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..441 FT /number=1 FT /note="FIRST EXON; p-value: 0.275." FT exon 442..590 FT /number=2 FT /note="INTERNAL EXON; p-value: 0.232." FT exon 591..646 FT /number=3 FT /note="INTERNAL EXON; p-value: 0.582." FT exon 647..822 FT /number=4 FT /note="INTERNAL EXON; p-value: 0.239." FT exon 823..1071 FT /number=5 FT /note="INTERNAL EXON; p-value: 0.648." FT exon 1072..1227 FT /number=6 FT /note="LAST EXON; p-value: 0.671." FT CONTIG join(NC_006583:7387710...7387270, 7380806...7380658, FT 7376862...7376807, 7374669...7374494, 7372354...7372106, FT 7370537...7370382) XX SQ Sequence 1227 BP; 240 A; 428 C; 341 G; 218 T; other; atgggggttg acatgtgtcc ccctcctccc ccgcgtggat ggcagctgct gggactatcc 60 ctctttgctt cctgccgggg cctttgccac tggctggctg gtgtgctcac cccctgtggc 120 ctcaaccact tcccaggccg catcgacacc cagacccacg ggctccccga ctctcagaat 180 ctgaacctgc cacaggagaa atcccacgct gctgggaggc aggcacaggg ctccagttgg 240 ctgatccccg gaccctggtc tcgcacctta tctgttgcag ccaagagtgg acgtgcccac 300 tactccccga gtggcgccag gcacgggcca gagttgctta tagctcatcg cagcatcttc 360 attcctttcc tgctggagtc agcatctggg ctccacacca tcagactgcc aggtcccccc 420 ccccagtggc cagtgacgat gcgccgcgcc cacagtggag agtctgcaga cgaggacccc 480 ctaactgagc tctccgaggc tggccccaac gcggggggca aagacaagca gagcccccct 540 cgccttggtg acggctgtgc tcagctgctg gcacgtctac ctgccgcccg ccttcctcaa 600 ccactccttc tcctcgtcct cgcctacatg tggtcagaat gtgggggccc agccaggctg 660 ccaagcaagt gctcctcaca ggccaccagg caggcagaac cctcccaatg ggcaggggct 720 agaagtctgg tggcccagtc tgagagcgat ggtggcctgg agggccccag attggacacc 780 gatgcacgga tggacacgct gtactgtcca ggaacaaagg agcccgccgg ccccctgacg 840 cagacactag gacttggagg tgagcaccag agccgtgtaa aagccagagc tcctgccacg 900 gaggaggtaa aacatcggcc atccctcgac agcgggaggg gaatctcgca ggccttcggc 960 gacctggctc ctctcgcagc acctctgcac gccaggggag ccgtgcacac ccgaccccta 1020 cacccatatc gggtggcaaa ggaaaattct agactctttc ttgaagccca ggaggacccg 1080 gcccgcaaca aggcttcgtt tggccctcgc accctggccg ctggatcacg ctggatttta 1140 ccttctctgc cccgggaacc tgcttccctt cgttgtcaca cagctaacct gcgactgagc 1200 aagaacaaca acgagaaaaa ctgctag 1227 // ID NC006583_172; SV 1; special; RNA; MAM; 591 BP. XX AC NC006583_172; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_172; NC006583_172. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..591 FT /organism="Canis familiaris" FT CDS 1..591 FT /protein_id="NC006583_172" FT /db_xref="trGEN:NC006583_172" FT /translation="MLGAWGALGTGVTGHGGPARGALRSGARGAEGSPHQTVK FT NVNISHSTPDIYTQHLPAGAVVSEVQGRTQSLPSGHLQLRSRERGRTPLSGRH FT WMRSTGQGGSFNCSSYDRVPAPYAVEAASFTLVALPPPILFPGGKWILEGLLH FT QEAGLLLQDSRRAKSDFSCFSVSFPTTAVVAAWVQGPGRSSLSTKRPAHSS" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '+' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..131 FT /number=1 FT /note="FIRST EXON; p-value: 0.903." FT exon 132..301 FT /number=2 FT /note="INTERNAL EXON; p-value: 0.899." FT exon 302..423 FT /number=3 FT /note="INTERNAL EXON; p-value: 0.771." FT exon 424..591 FT /number=4 FT /note="LAST EXON; p-value: 0.474." FT CONTIG join(NC_006583:7404255...7404385, 7409293...7409462, FT 7410178...7410299, 7413075...7413242) XX SQ Sequence 591 BP; 107 A; 188 C; 187 G; 109 T; other; atgctgggcg catggggggc gctgggcaca ggggtcactg ggcatggggg gcctgcacgg 60 ggggccctgc gctcgggggc acgcggggcc gagggttccc cgcaccagac ggttaaaaat 120 gtgaacatca gccactccac cccggacatt tacacgcagc acctccctgc aggcgctgtg 180 gtttccgaag tccaaggacg cacacagtcc ctgccctccg ggcacctgca gttaagatcc 240 agggagagag ggcggactcc cctgagtggc cggcactgga tgagaagcac cggacagggt 300 ggttccttca actgctcctc ctacgacagg gttcctgccc catacgccgt ggaggcagcc 360 tctttcactc tagtggcgct ccccccacca atcttgttcc caggagggaa gtggattctt 420 gagggtctcc tgcaccagga ggctgggctg ttgctccagg attcccgcag agcaaaatca 480 gatttcagct gcttttctgt aagctttcct accacggcgg tggtggctgc ctgggtgcag 540 ggccctggac gcagctcgct gtccaccaaa cgcccagctc acagcagctg a 591 // ID NC006583_173; SV 1; special; RNA; MAM; 708 BP. XX AC NC006583_173; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_173; NC006583_173. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..708 FT /organism="Canis familiaris" FT CDS 1..708 FT /protein_id="NC006583_173" FT /db_xref="trGEN:NC006583_173" FT /translation="MTQDTHHLGDTKDVPPAIWFTSKMQVNVLRLRQLKLEVW FT TDSGSLQRSRTALGTPLPPPHPGDQDHRQPCRQPPSWAGRRRARDSRKLNLER FT GPQHHGRKACRRDEQERVDRPPWRRCLHSQEHLTSLIRKPRGLRPGPRPPTPS FT PKRTAAGQGVQLRGVTALSGALNAKAARGPVEGLLGDGPCAGSPHALPHPQAP FT HSPGRALSKPVTEADTCCFTNRPPEVIVLVHQVSSEF" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '-' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..138 FT /number=1 FT /note="FIRST EXON; p-value: 0.902." FT exon 139..273 FT /number=2 FT /note="INTERNAL EXON; p-value: 0.587." FT exon 274..389 FT /number=3 FT /note="INTERNAL EXON; p-value: 0.739." FT exon 390..609 FT /number=4 FT /note="INTERNAL EXON; p-value: 0.430." FT exon 610..708 FT /number=5 FT /note="LAST EXON; p-value: 0.906." FT CONTIG join(NC_006583:7421296...7421159, 7419884...7419750, FT 7419026...7418911, 7417135...7416916, 7415639...7415541) XX SQ Sequence 708 BP; 133 A; 252 C; 225 G; 98 T; other; atgacccagg acacacatca cctgggagac accaaggacg tccctcctgc tatttggttt 60 acttcgaaga tgcaagtgaa tgtgttaaga ttgcgtcagc tcaagctgga agtgtggaca 120 gacagtgggt ctttgcagcg aagccggaca gcgttaggga cgccgctgcc gccgccgcac 180 ccgggggacc aggaccaccg ccagccctgc cgccagcctc catcctgggc gggacgaaga 240 cgagccagag actcgaggaa gctcaacctc gagcgtggcc cccagcacca cggaaggaag 300 gcctgccgcc gggatgagca ggagcgtgtg gaccggccgc cctggcgccg gtgtctgcac 360 tctcaggagc acctcacgtc gctcatcagg aaaccccggg ggctccgacc cgggccgcgt 420 cccccgaccc cgagccccaa gcggactgcc gcggggcagg gcgtgcagct ccgcggggtc 480 acagcgctga gcggggcgct caacgccaag gcggcccgag ggcccgttga gggacttctg 540 ggggacgggc cctgcgcggg ctccccacac gccctgcccc acccccaggc cccgcacagc 600 cccgggaggg ccctcagcaa acctgtgacc gaggctgaca cgtgctgctt cacaaaccga 660 ccccctgaag tcatcgtcct tgtccaccag gtctcttctg agttttaa 708 // ID NC006583_174; SV 1; special; RNA; MAM; 1578 BP. XX AC NC006583_174; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_174; NC006583_174. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..1578 FT /organism="Canis familiaris" FT CDS 1..1578 FT /protein_id="NC006583_174" FT /db_xref="trGEN:NC006583_174" FT /translation="MKRSYGTCKQREKHLDFRSPATPPALSVLGYHLVQHRRK FT ADTFAQECNDEQNANRKDAPDCCELPRFTLLVLDVAVNTVLEHPRHLWLHPGI FT VSKSYECRLKGQGATFVETDSPFTAATLAEASPVKERPLRSGRRQAAAPEQVQ FT QVIIIQGYDGEFALDASVEETAAATLQTLALAGQVARVVHITEDGQVITAAQS FT SAHVGGVAPGPVLPEQVVVVGGPVDSHAGDEPLSPGGTVIQQVTKQELLDLAE FT AGVPPPDAASALDALLCAVTELGGADGRAGPDDKGRPSPEDALGRLPGQEVPA FT ATAAQPGAPEPHVFPDPREAAVAEAMGALPRALGPSGAPQERAQLAFKKVVQG FT VLQFAVCDPAAAGQLMKEGVTQVIVNEEGTVHMLAREGSQIIMREAEAHGQHV FT GLAEPDGEISQIIVTEELVQAMVQESAGGFPEGATHYIVTELPPGVQDDAGLY FT SHTVIEAADSQELLQAGAALGAEAMVPNGTEQLTSMVIYTQEGSPAATVIQSQ FT RESNELREA" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '-' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..61 FT /number=1 FT /note="FIRST EXON; p-value: 0.233." FT exon 62..168 FT /number=2 FT /note="INTERNAL EXON; p-value: 0.380." FT exon 169..271 FT /number=3 FT /note="INTERNAL EXON; p-value: 0.389." FT exon 272..1578 FT /number=4 FT /note="LAST EXON; p-value: 0.989." FT CONTIG join(NC_006583:7436025...7435965, 7434936...7434830, FT 7433294...7433192, 7425361...7424055) XX SQ Sequence 1578 BP; 285 A; 492 C; 567 G; 234 T; other; atgaagaggt cctatggcac ctgtaaacag cgggagaagc atctggactt caggagccca 60 gccacaccac cagccctgtc tgtcctgggc tatcatctag ttcagcatag gcgcaaggcg 120 gacacctttg cacaggagtg caatgatgag cagaatgcaa acaggaaaga tgcaccggac 180 tgttgtgagt tgcctcggtt tactctgctc gtcctggatg tcgctgtgaa cacagtgctg 240 gagcatcctc ggcacttgtg gctacaccca ggcatcgtgt ccaagtccta tgaatgccgt 300 ttgaagggcc aaggagccac gttcgtggag acggacagcc cgttcacggc ggccacactg 360 gcagaggcgt cccccgtcaa ggagaggccc ctgaggagcg gcaggcggca ggcggcggca 420 cccgagcagg tccagcaggt catcatcatc cagggctatg acggggagtt cgccctggac 480 gcctcggtgg aggagacggc cgctgccaca ctgcagacac tggcgctggc tggccaggtg 540 gcccgggtgg tacacatcac ggaagatggg caggtcatca ccgcggctca gagcagtgcc 600 catgtgggcg gcgtggcccc cgggccggtt ctgcccgagc aggtggtggt cgtggggggc 660 ccagtggaca gccacgctgg ggatgagccc ctgagcccag gcggcaccgt gatccaacag 720 gtgaccaagc aggagctcct ggacctcgcc gaggctggcg tccctccgcc cgatgcggcc 780 tcggccctag acgccctgct gtgcgcggtc actgagctgg ggggcgcaga tggccgggca 840 gggcccgatg acaagggcag gcccagcccc gaggatgcgc tgggccggct gccgggtcag 900 gaggtgccgg ctgccaccgc cgcacagccc ggggcccccg agccccacgt gttccctgac 960 ccccgggagg ccgcggtggc agaggccatg ggggcgctgc cccgggcgct ggggccctcg 1020 ggcgccccac aggagcgagc gcagctggcc ttcaagaagg tggtccaggg cgtgctgcag 1080 tttgctgtgt gcgacccggc agcggccggg cagctcatga aggagggcgt gacgcaggtg 1140 atcgtgaatg aggagggcac cgtgcacatg ctggcccggg agggctccca gatcatcatg 1200 cgggaggccg aggcgcacgg gcagcacgtg gggctggccg agcctgacgg ggagatctcg 1260 cagatcatcg tcaccgagga gctggtccag gccatggtgc aggagtcggc gggcggcttt 1320 cccgaaggcg ccactcacta catcgtgacc gagctgcccc cgggcgtgca ggacgacgcg 1380 ggcctctatt cgcacaccgt catcgaggcg gctgactctc aggagcttct gcaggccggg 1440 gctgctctcg gtgccgaggc catggtcccg aacggcacgg aacagttgac gagcatggtc 1500 atctacaccc aggagggctc cccagctgcc actgtcattc agagccaaag agagagtaat 1560 gagctccggg aagcctga 1578 // ID NC006583_175; SV 1; special; RNA; MAM; 546 BP. XX AC NC006583_175; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_175; NC006583_175. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..546 FT /organism="Canis familiaris" FT CDS 1..546 FT /protein_id="NC006583_175" FT /db_xref="trGEN:NC006583_175" FT /translation="MEFAPVFRLGAECDCGQFAHNLEPSKCPSKEAQMDTLWY FT IHTVEDHPGIRGNKDSRCNNGNESQRPAKSNCMQLIYHGWKTTDPAYEKTEIS FT PKNFPGEMYEIEPFPYDYDFETVTCINSNYHHMLEINLSRMTPSIMDVWNIFY FT ESMLQKRFQSERYLGELSSNAVASEWECALETDGLH" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '+' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..52 FT /number=1 FT /note="FIRST EXON; p-value: 0.483." FT exon 53..194 FT /number=2 FT /note="INTERNAL EXON; p-value: 0.362." FT exon 195..418 FT /number=3 FT /note="INTERNAL EXON; p-value: 0.873." FT exon 419..546 FT /number=4 FT /note="LAST EXON; p-value: 0.991." FT CONTIG join(NC_006583:7444767...7444818, 7446663...7446804, FT 7449279...7449502, 7451606...7451733) XX SQ Sequence 546 BP; 173 A; 118 C; 122 G; 133 T; other; atggaatttg caccagtgtt tagactgggt gctgagtgtg attgtggcca gtttgcccac 60 aacttggaac catccaaatg cccatcaaaa gaagcacaaa tggacacact gtggtatatc 120 cacacagtgg aggaccaccc aggaataaga gggaacaagg actctagatg caacaatggg 180 aatgaatctc aaaggccggc caaatctaat tgtatgcaac tcatttacca tggctggaaa 240 acaacagatc cagcttatga gaaaacagag atttcaccaa aaaatttccc tggggaaatg 300 tatgaaattg agccttttcc ttatgactat gattttgaaa ctgtaacctg catcaactca 360 aattaccatc acatgcttga aatcaatttg tcgagaatga ctccatccat aatggatgtg 420 tggaacatct tctacgagag catgctacaa aagagattcc agtctgagcg ctaccttggt 480 gaactgtcaa gcaatgccgt ggcctctgag tgggaatgtg cccttgagac cgacgggctt 540 cattag 546 // ID NC006583_176; SV 1; special; RNA; MAM; 540 BP. XX AC NC006583_176; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_176; NC006583_176. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..540 FT /organism="Canis familiaris" FT CDS 1..540 FT /protein_id="NC006583_176" FT /db_xref="trGEN:NC006583_176" FT /translation="MAVRSGPSGRAISGWGQEGGSSGCKCECESHMRALHFLS FT ISKDSCFPPHVCSPAASHVSYTAKRYSEHLPMSVFLSPMLKNEEGMKEDGLQA FT DVKAFPTLSFVHREHSASFSVDKSMSNRIQLTSPNSSSPTADVYFPDGQVFQR FT PPPVIGSLLAALPAATPAPLLSDFSTVARGTLQK" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '-' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..83 FT /number=1 FT /note="FIRST EXON; p-value: 0.197." FT exon 84..204 FT /number=2 FT /note="INTERNAL EXON; p-value: 0.551." FT exon 205..432 FT /number=3 FT /note="INTERNAL EXON; p-value: 0.291." FT exon 433..540 FT /number=4 FT /note="LAST EXON; p-value: 0.483." FT CONTIG join(NC_006583:7490719...7490637, 7487822...7487702, FT 7478907...7478680, 7469547...7469440) XX SQ Sequence 540 BP; 121 A; 155 C; 137 G; 127 T; other; atggcagtgc gttcaggacc aagtggaagg gcaatcagtg gatggggcca ggaggggggc 60 tcctcaggat gcaagtgtga gtgtgagtct catatgcgag cacttcattt cctctccatc 120 agtaaagatt cttgcttccc acctcacgtc tgctcccctg cggcctcgca tgtctcatac 180 actgctaagc gctacagtga gcatctgccc atgtctgtgt ttctgagtcc catgttgaaa 240 aatgaagaag gaatgaaaga agacgggctc caagcagatg tcaaggcatt tcctaccctt 300 agctttgtgc acagagagca ttcagctagc ttctcggtgg ataagagcat gagcaacagg 360 atccagctca cgtcccccaa cagctccagc ccgactgctg atgtgtactt tcctgatggg 420 caagtcttcc agcggccacc accagtcatc ggtagcctcc tcgctgccct tcctgctgcc 480 acccctgctc cactgctgtc ggatttcagt actgtagcca gaggaaccct tcagaagtag 540 // ID NC006583_177; SV 1; special; RNA; MAM; 717 BP. XX AC NC006583_177; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_177; NC006583_177. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..717 FT /organism="Canis familiaris" FT CDS 1..717 FT /protein_id="NC006583_177" FT /db_xref="trGEN:NC006583_177" FT /translation="MLEKSLNIKLNILHNVHGKPIKGKPRQRCEHEKTVHEDW FT SSAATVQEVTRTYQKGMDQLLPRCSEQLIPIGTLVMTAGLQEYDAIAHHTPLK FT YFSYFAKSTTTNDTLKFPNELQSTNSSEETAMENIMNLGLLINNIFNSPSLKP FT FSYLQILESPNVLGLIWSLLPHSSPPGPCSPGPPTAFRKVSSKLRESDRTENE FT KESKEKKPVTETPNLPCQVDTGHATKPEAPEHEEPGNRDV" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '+' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..66 FT /number=1 FT /note="FIRST EXON; p-value: 0.391." FT exon 67..244 FT /number=2 FT /note="INTERNAL EXON; p-value: 0.121." FT exon 245..425 FT /number=3 FT /note="INTERNAL EXON; p-value: 0.021." FT exon 426..553 FT /number=4 FT /note="INTERNAL EXON; p-value: 0.148." FT exon 554..717 FT /number=5 FT /note="LAST EXON; p-value: 0.146." FT CONTIG join(NC_006583:7494482...7494547, 7511818...7511995, FT 7531941...7532121, 7538686...7538813, 7554832...7554995) XX SQ Sequence 717 BP; 222 A; 205 C; 149 G; 141 T; other; atgttagaaa aatcactgaa cataaagctc aacatacttc ataatgtcca tggaaagccc 60 attaagggga aacctagaca gaggtgtgag catgagaaga ctgtccatga agactggagt 120 tctgctgcca cagtccaaga ggtcaccaga acctaccaga aaggcatgga ccagctgctc 180 ccccgctgct cagagcagct catccccatt ggcaccttgg tcatgactgc tggcctccag 240 gaatatgatg ccattgcaca tcacacccca ctgaagtact tttcatactt tgccaagtcc 300 actacaacaa atgatactct gaaattcccc aacgagctgc aatcaacaaa cagctcagag 360 gagaccgcca tggaaaacat catgaacctg ggccttctaa ttaacaatat ttttaattct 420 cctagtttaa aacccttctc atatcttcaa attctggagt ctcccaacgt cctgggcctc 480 atctggagtc tccttcctca ttccagccca ccaggaccct gctcccctgg cccacccacg 540 gccttcagga aagttagctc caaacttagg gaatctgaca ggaccgagaa tgagaaagag 600 agcaaagaga aaaagccagt taccgaaacg ccaaacctgc catgccaggt ggacacaggg 660 cacgccacca aaccagaggc gccagagcat gaagaaccag ggaacagaga cgtgtag 717 // ID NC006583_178; SV 1; special; RNA; MAM; 804 BP. XX AC NC006583_178; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_178; NC006583_178. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..804 FT /organism="Canis familiaris" FT CDS 1..804 FT /protein_id="NC006583_178" FT /db_xref="trGEN:NC006583_178" FT /translation="MTIGVKVRGQKGDLSTRPYIMILERKFTCHLCDRSFTEK FT WALNNHMKLHTGEKPFKCTWPTCHYSFLTASAMKDHYRTHTVPHLFIVATGEK FT SFLCDLCGFAGGTRHALTKHRRQHTGEKPFKCDECNFASTTQSHLTRHKRVHT FT GEKPYRCPWCDYRSNCAENIRKHILHTGKHEGVKMYNCPKCDYGTNVPVEFRN FT HLKEQHPDIENPDLAYLHAVGLGAMIGLMNPCWAVGTVMGPAAAVAAGFSLRV FT AYGPSAVSSGVCTVRC" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '-' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..74 FT /number=1 FT /note="FIRST EXON; p-value: 0.651." FT exon 75..241 FT /number=2 FT /note="INTERNAL EXON; p-value: 0.915." FT exon 242..352 FT /number=3 FT /note="INTERNAL EXON; p-value: 0.694." FT exon 353..473 FT /number=4 FT /note="INTERNAL EXON; p-value: 0.427." FT exon 474..652 FT /number=5 FT /note="INTERNAL EXON; p-value: 0.988." FT exon 653..804 FT /number=6 FT /note="LAST EXON; p-value: 0.722." FT CONTIG join(NC_006583:7616182...7616109, 7602619...7602453, FT 7598288...7598178, 7588640...7588520, 7562322...7562144, FT 7559655...7559504) XX SQ Sequence 804 BP; 213 A; 209 C; 208 G; 174 T; other; atgaccatag gggtgaaagt cagaggtcag aaaggagatt taagtaccag accctacatt 60 atgattttgg aaaggaaatt tacatgccac ttatgtgata gaagtttcac agagaagtgg 120 gccctgaaca accacatgaa gctccacacg ggagaaaagc catttaagtg tacctggccc 180 acatgccatt actcattcct cacggcctcc gccatgaaag accactacag gacacacaca 240 gtccctcatc tgtttattgt tgcaacaggc gagaagtcgt ttctgtgcga cctctgcggc 300 tttgccggcg ggacacggca cgccctcacc aagcaccgcc gccagcacac aggagaaaaa 360 cctttcaaat gtgatgagtg taactttgcc tccacaaccc agtctcatct gactcggcac 420 aagcgagtgc acacgggaga aaagccttac aggtgcccat ggtgtgacta caggtcaaac 480 tgtgccgaaa atatccgcaa gcacattttg cacactggca aacatgaagg agtcaagatg 540 tacaactgcc ccaaatgtga ctatgggaca aacgtgcctg tggaattccg aaaccacttg 600 aaagagcagc atcccgacat cgagaaccct gacctggctt acttgcatgc tgtgggatta 660 ggcgccatga ttggattgat gaacccatgc tgggccgtag gtactgtgat ggggcccgcg 720 gcggccgtgg cggcagggtt ttctctgaga gtggcttatg gtccatcagc ggtgtcctct 780 ggtgtctgca cggttcgttg ctga 804 // ID NC006583_179; SV 1; special; RNA; MAM; 240 BP. XX AC NC006583_179; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_179; NC006583_179. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..240 FT /organism="Canis familiaris" FT CDS 1..240 FT /protein_id="NC006583_179" FT /db_xref="trGEN:NC006583_179" FT /translation="MEISENVYLEEVHMILGGAVGLNTSDLLLLELYRVALKL FT LFRVPLSFILVCFLVTWCCSPPFPAICQYPGVMPDWKICD" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '-' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..66 FT /number=1 FT /note="FIRST EXON; p-value: 0.857." FT exon 67..240 FT /number=2 FT /note="LAST EXON; p-value: 0.719." FT CONTIG join(NC_006583:7632490...7632425, FT 7631604...7631431) XX SQ Sequence 240 BP; 45 A; 59 C; 60 G; 76 T; other; atggaaattt ctgagaacgt ctacctggag gaagtacata tgatcctggg tggggccgtg 60 ggactgaata cttcagatct gttacttctg gaactctacc gcgtagctct taagttgctg 120 ttcagggtac cactgtcatt catccttgtc tgttttctgg tcacgtggtg ttgttctccc 180 cccttccccg ccatatgcca gtatcctggt gtcatgcccg actggaagat ttgtgactga 240 // ID NC006583_180; SV 1; special; RNA; MAM; 435 BP. XX AC NC006583_180; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_180; NC006583_180. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..435 FT /organism="Canis familiaris" FT CDS 1..435 FT /protein_id="NC006583_180" FT /db_xref="trGEN:NC006583_180" FT /translation="MLHLLSKKLLEQHNSTSGWYKPGKLLGSLRLCVKEKPCT FT TRSEEHSHREIKTLLLLDSKCICCVGPASDASHSIRYANIGPGTLLRNDTDFH FT YNSDSFTSPREPMKKVLTSSAKGKRPKAQKPKYRLAMNDKKRLSLPVNKAQP" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '+' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..185 FT /number=1 FT /note="FIRST EXON; p-value: 0.465." FT exon 186..305 FT /number=2 FT /note="INTERNAL EXON; p-value: 0.389." FT exon 306..435 FT /number=3 FT /note="LAST EXON; p-value: 0.271." FT CONTIG join(NC_006583:7644560...7644744, 7645841...7645960, FT 7654331...7654460) XX SQ Sequence 435 BP; 142 A; 109 C; 93 G; 91 T; other; atgctccatc tgctttcaaa gaagcttctg gagcagcaca attctacctc tggctggtac 60 aaaccaggga aactgttagg gtcacttcgt ctgtgcgtaa aggaaaagcc gtgcaccacc 120 aggtctgaag aacatagcca cagagaaata aaaacactgt tgttactgga ctcaaagtgt 180 atatgctgcg tgggcccagc atcagatgca agtcacagca tccggtacgc aaacattggc 240 cctggcacac tcttgagaaa cgacactgat tttcactaca actctgactc ttttaccagc 300 ccacgagagc caatgaagaa agttcttaca agttctgcaa aaggaaagcg accaaaagcc 360 caaaagccca aataccgtct ggcaatgaat gacaagaaaa ggttgtctct gccagtaaat 420 aaagcacagc cttag 435 // ID NC006583_181; SV 1; special; RNA; MAM; 1359 BP. XX AC NC006583_181; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_181; NC006583_181. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..1359 FT /organism="Canis familiaris" FT CDS 1..1359 FT /protein_id="NC006583_181" FT /db_xref="trGEN:NC006583_181" FT /translation="MRRKGNPHTLLVGMGTGAATLENCVEVPQQLKIDLPYDP FT AIALLGIYPKDTNAMKRRDTCTPMFIAAMATIAKLWKEPRCPTKDEWIKKMWF FT MYTMEYYSAIRNDKYPPFASTWMELEGIMLSEEYDEKQDPLEMEWMRKRLTKD FT RGLGLRLETENIWTGVKGQNERKQATVPGVYRKGNGNQTVHLGSSPYCHNTQE FT VSTVFKCLKDKNMYQIRSFCTAKDTVNKTKRQPTQWEKIFANDVSDKGLVSKI FT YKELIKLNTKETNNPIMKWAKDMNRNLTEEDIDMANKHMRKCSASLAIREIQI FT KTTVRYPLTPVRMGKINKAGNHKCWRGCGEKGTLLHCWWECELVQPLWKTVWR FT FLKELKIDLPYDPAIALLGIYPKDADTMKHRDTCTPMFIAAMSTIAKLWKEPR FT CPSKDEWIKKMWFMYTMEYCSAIKMTNTHHLLQRGWNWRVLC" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '+' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..372 FT /number=1 FT /note="FIRST EXON; p-value: 0.324." FT exon 373..478 FT /number=2 FT /note="INTERNAL EXON; p-value: 0.505." FT exon 479..639 FT /number=3 FT /note="INTERNAL EXON; p-value: 0.177." FT exon 640..1359 FT /number=4 FT /note="LAST EXON; p-value: 0.093." FT CONTIG join(NC_006583:7687636...7688007, 7691992...7692097, FT 7698172...7698332, 7714826...7715545) XX SQ Sequence 1359 BP; 491 A; 267 C; 322 G; 279 T; other; atgcggagaa aagggaaccc tcatacactg ttggtgggaa tgggaactgg tgcagccact 60 ctggaaaact gtgtggaggt tcctcaacag ttaaaaatag acctgcccta cgacccagca 120 attgcactgt tggggattta ccccaaagat acaaatgcaa tgaaacgccg ggacacctgc 180 accccgatgt ttatagcagc aatggccacg atagccaaac tgtggaagga gcctcggtgt 240 ccaacgaaag atgaatggat aaagaagatg tggtttatgt atacaatgga atattactca 300 gctattagaa atgacaaata cccaccattt gcttcaacgt ggatggaact ggagggtatt 360 atgctgagtg aagaatatga tgaaaaacaa gatccattag agatggaatg gatgagaaag 420 agactcacaa aggacagagg ccttgggctg agactggaaa cagaaaatat ctggactggt 480 gtcaagggac aaaatgagcg gaaacaagca actgttcctg gagtatacag aaaaggtaat 540 ggaaaccaaa cagtacatct gggctcttca ccctactgtc ataatacaca agaggtgtct 600 actgtattta agtgcctaaa ggataaaaat atgtatcaga taagaagctt ttgcacagca 660 aaggatacag tcaacaaaac taaaagacaa cctacacaat gggagaagat atttgcaaat 720 gacgtgtcag ataaagggct agtttccaag atctataaag aacttattaa actcaacacc 780 aaagaaacaa acaatccaat catgaaatgg gcaaaagaca tgaacagaaa tctcacagag 840 gaagacatag acatggccaa caagcacatg agaaaatgct ctgcatcact tgccatcagg 900 gaaatacaaa tcaaaaccac agtgagatac cccctcacac cagtgagaat ggggaaaatt 960 aacaaggcag gaaaccacaa atgttggaga ggatgcggag aaaagggaac cctcttgcac 1020 tgttggtggg aatgtgaact ggtgcagcca ctctggaaaa ctgtgtggag gttcctcaaa 1080 gagttgaaaa tagacctgcc ctacgaccca gcaattgcac tgctggggat ttaccccaaa 1140 gatgcggata caatgaaaca ccgggacacc tgcaccccga tgtttatagc agcaatgtcc 1200 acaatagcca aactgtggaa ggagcctcgg tgtccatcga aagatgaatg gataaagaag 1260 atgtggttta tgtatacaat ggaatattgc tcagccatta aaatgacaaa tacccaccat 1320 ttgcttcaac gtggatggaa ctggagggta ttatgctga 1359 // ID NC006583_182; SV 1; special; RNA; MAM; 369 BP. XX AC NC006583_182; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_182; NC006583_182. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..369 FT /organism="Canis familiaris" FT CDS 1..369 FT /protein_id="NC006583_182" FT /db_xref="trGEN:NC006583_182" FT /translation="MATIAKLWKEPRCPSKDEWIKKMWSMYTMEYCSAIRNDK FT YPPYASTWMELEGIMLSESPKTLAKLHDHNYDRYEKTQQPSSHERAGASSHSL FT VLSSAHEHQALSSPHYFDELFMVSTHEDLI" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '+' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..171 FT /number=1 FT /note="FIRST EXON; p-value: 0.816." FT exon 172..253 FT /number=2 FT /note="INTERNAL EXON; p-value: 0.149." FT exon 254..369 FT /number=3 FT /note="LAST EXON; p-value: 0.952." FT CONTIG join(NC_006583:7718500...7718670, 7721710...7721791, FT 7727715...7727830) XX SQ Sequence 369 BP; 110 A; 91 C; 83 G; 85 T; other; atggccacaa tagctaaact gtggaaggag cctcggtgtc catcgaaaga tgaatggata 60 aagaagatgt ggtctatgta tacaatggaa tattgctcag ccattagaaa cgacaaatac 120 ccaccatatg cttccacgtg gatggaactg gagggtatta tgctgagtga aagccctaag 180 acccttgcaa agctacatga tcacaactat gatcgctatg agaaaaccca gcagcctagc 240 agccacgaga gagctggagc cagttcacac tccttggtgc tgagctctgc ccatgagcac 300 caagctctct cctcgcctca ttactttgat gaacttttta tggtcagcac ccatgaagac 360 ctcatctag 369 // ID NC006583_183; SV 1; special; RNA; MAM; 198 BP. XX AC NC006583_183; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_183; NC006583_183. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..198 FT /organism="Canis familiaris" FT CDS 1..198 FT /protein_id="NC006583_183" FT /db_xref="trGEN:NC006583_183" FT /translation="MINTQDMPQEHREKFRLTVEITKVFMERALHTGMLHGSE FT TATLPSCYVLASTMHIKDSHVSLMFR" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '+' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..84 FT /number=1 FT /note="FIRST EXON; p-value: 0.665." FT exon 85..198 FT /number=2 FT /note="LAST EXON; p-value: 0.929." FT CONTIG join(NC_006583:7761087...7761170, FT 7764239...7764352) XX SQ Sequence 198 BP; 57 A; 51 C; 44 G; 46 T; other; atgataaaca cccaagatat gccacaggaa cacagagaga agttccggct gacagtggag 60 attaccaaag tcttcatgga aagggcccta cacactggga tgctgcatgg atctgaaaca 120 gctacgcttc catcctgcta cgtccttgcc tccactatgc acataaaaga ctcccatgtg 180 tctttgatgt ttcggtga 198 // ID NC006583_184; SV 1; special; RNA; MAM; 414 BP. XX AC NC006583_184; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_184; NC006583_184. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..414 FT /organism="Canis familiaris" FT CDS 1..414 FT /protein_id="NC006583_184" FT /db_xref="trGEN:NC006583_184" FT /translation="MAASHLGPLIPEPVLPYLSSPQLLSAITTYKYHISEKLK FT NIKSQSADHPKGNAPLHPRVTDVGTEAACGSRQGQKSKCRQCDLLKHNTSHHQ FT FTKLWSMNCNSKYCMGTSDRFHERKRVPSAQKTCNGWYPSSSPGL" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '+' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..126 FT /number=1 FT /note="FIRST EXON; p-value: 0.830." FT exon 127..222 FT /number=2 FT /note="INTERNAL EXON; p-value: 0.651." FT exon 223..414 FT /number=3 FT /note="LAST EXON; p-value: 0.669." FT CONTIG join(NC_006583:7786481...7786606, 7806915...7807010, FT 7807814...7808005) XX SQ Sequence 414 BP; 121 A; 123 C; 88 G; 82 T; other; atggcagcat cccacctggg cccacttata cctgaacctg tcctgcccta tctctcaagc 60 ccccagctgt tatctgccat cacaacctac aaataccaca tctctgaaaa actaaagaat 120 attaagtccc agtctgccga ccacccaaag gggaatgccc cactgcaccc cagggtgaca 180 gatgtcggca ccgaggcagc atgtggcagc aggcagggcc agaaatcgaa atgtcggcaa 240 tgtgacctgc taaaacacaa cacttctcac catcagttca ccaagctctg gtcaatgaac 300 tgtaattcaa agtattgtat gggaacttca gataggttcc atgaaaggaa gagggtgccc 360 tcagcccaga agacatgcaa tggctggtac cccagcagct ctcctggact ataa 414 // ID NC006583_185; SV 1; special; RNA; MAM; 4788 BP. XX AC NC006583_185; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_185; NC006583_185. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..4788 FT /organism="Canis familiaris" FT CDS 1..4788 FT /protein_id="NC006583_185" FT /db_xref="trGEN:NC006583_185" FT /translation="MHEPVARAHLTCYECQVSRPDISNVTGTLLMMDTEKKPE FT NDEDENITKEAKDLRNTSSHDVDCGPVFDVIPNSSENPTSKRGFPESSHFGSV FT TVVEDGNKHASKRMKLSAEAEHLEPEEQGIHRLETSASMVPEGHIPLSETVRE FT TLLNECPDGGTRLPNAFSPPCSLSTVDAVSPKIDTEKKSAQEMVSLDPERESP FT FPLKEISVSCTIGNVDSVFKCSICGHLFSSCPDLEKHAECHTQQSMEYTCCHC FT SHKAESSAALHVHVRQTHGPQQVFSCDLCGFQCVEENLLNAHYLGKTHLRRQN FT LAARGGFVQILTKQPFPKKPCAMGTKNVRVKPRASKPIAKTGDSKGLRNVGSK FT FKDFRGNISKQSGSSSELLVEMMPSRNTSSEKVEIIEENVTSLGIARNTENQD FT KNKKLGALVSSEGLLEKFESTKNTLQAAHSVSVSSRPRPERNILTLGSSFRRR FT TGTFTLKGQAKKRFNLLGISKRAANDTQRMYMKHFRTQVKTSEAESVAKHVET FT SGSVDSVCVASSESADLKQDQRSSHRACSFSSMVVRPAADRQMWTCTDRGQEA FT TNRTELKTHGERAPPGEVKLHCQACDFSSTLRRDLDRHSHDSQHQHAAAGLRC FT QCCSFISEDELSLRDHMKEKHKMGFLCAPCNLFFLSEKDLEEHAMAEKHVCLL FT VQPKTSQSFNSDLALQTLPLSSLESENMKDQMSESGKAAQEEAGKPRVSHGHE FT VRHSSKPQFQCKKCFYKTRSSTVLTRHIKLRHGQDYHFLCKACNLYSLSKEGM FT EKHIKRSKHLENAKKNNIGLSFEECIERVCIGANDRKEELHVSGNGRIEGHME FT GVQLQESSCLEKSVLTSKEVPQPGVTAREGEVALTATSKRGRPKGNISRTCSH FT CGLLASSITNLTVHIRRKHSHQYSYLCKVCKYYTVTKGDMERHCATKKHKGRV FT EIEANGKQSSDIIVGPEGGNLEACRRNAISAGSDELANKSAESDTCTSEKPGA FT EHGNPTEVEVENVFHSTDGEVNSHLTDKKEQMSLEPEDPPQQGDACSQRDGVG FT TGDNKCVHCDFNAHSSASLELHIKRKHTKEFAFYCMACDYYAVTRREMTRHAA FT TEKHKMKRQSYLTSSDIEASSADVSKNIIIPEEQHQHSSEEYQIISDQSSEEI FT LRSKNNADVCVLDEDTSLDVSKILRAPNSVEIETEEESNLSEDHSFCGNFQQP FT LAKDKALKPEEMVSFNISSNCGSPSRFQNENSGSSTLDYEAVERARGVLNDTG FT DPSTPSERDVGEAGENAEKGLGRPGVGGRHLAESTMPVVMTGTRQELDLESSG FT QNEVGSAQNPEDLKDSGEGPVMENKEILMNSQHETKIILEEDGPASDSTVESN FT DVYETIISIDDRGQAMYSFGRFDSSIIRIKNPEDGELLDQSEEGLITTGVRIS FT ELPLKDCAQGMKKKKSDGGSFGESTRIRCDDCGFLADGLSGLNVHIAMKHPTK FT EKHFHCLLCGKSFYTESNLHQHLASAGHMRNEQASVEELPEGGATFKCVKCTE FT PFDSEQNLFLHIKGQHEELLREVNKYIVEDTEQINREREENQGNVCKYCGKMC FT RSSNSMAFLAHIRTHTGSH" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '-' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..34 FT /number=1 FT /note="FIRST EXON; p-value: 0.734." FT exon 35..4777 FT /number=2 FT /note="INTERNAL EXON; p-value: 0.801." FT exon 4778..4788 FT /number=3 FT /note="LAST EXON; p-value: 0.405." FT CONTIG join(NC_006583:7848593...7848560, 7841511...7836769, FT 7827511...7827501) XX SQ Sequence 4788 BP; 1480 A; 973 C; 1212 G; 1123 T; other; atgcacgaac cagttgctcg agctcactta acatgttatg agtgccaagt gagccgccct 60 gacataagca acgtcaccgg tacgttatta atgatggata ctgagaagaa gccagagaat 120 gatgaggatg aaaatatcac caaagaagca aaagacttga gaaatacttc atctcatgat 180 gttgattgtg ggcctgtatt tgatgtgatc ccaaattcct cagagaatcc caccagcaaa 240 agaggttttc cagaatcctc acactttggc agtgtcactg tggtggaaga cggaaacaaa 300 catgcttcca aacgaatgaa attatcagct gaggcagagc acctggagcc tgaagaacag 360 ggcattcaca ggctagaaac ttctgcaagc atggtcccag aagggcatat tccgttaagt 420 gagacagtga gggagaccct cctgaatgaa tgcccagatg gaggcacgcg tcttcccaat 480 gccttctccc ctccttgcag tcttagcact gtggatgctg tttctccgaa aatagacact 540 gaaaaaaaat ctgctcagga aatggtttcc cttgatccgg aaagagaatc tcctttcccc 600 ctgaaagaga tcagtgttag ttgtaccatt ggaaatgtag attcagtttt caagtgcagc 660 atatgtggtc atttgttttc ttcttgccct gatttggaaa aacatgctga atgtcatacg 720 caacaatcta tggaatatac ctgctgtcac tgtagccaca aagcagagag cagtgcagca 780 ttgcatgtgc atgtcagaca gacacatggg ccacagcaag tcttttcttg tgatctctgt 840 ggctttcagt gtgtggaaga aaacctgttg aatgcccatt atctcggcaa aacgcatctc 900 cgacgtcaga atcttgccgc tcgtggagga tttgtacaga tattaacaaa acagcccttc 960 cctaagaaac catgtgccat gggaacaaaa aatgttcgcg taaaaccaag agcttctaaa 1020 ccaatagcaa agacaggtga ttcaaaagga ttacgaaatg ttggaagcaa atttaaagat 1080 ttccgaggaa acatttctaa gcaaagtgga agtagcagtg agctgcttgt tgaaatgatg 1140 ccatccagga atacttcatc agaaaaagta gagatcatcg aagaaaacgt tacttccctt 1200 ggcatagctc gaaacactga aaaccaggat aaaaataaaa agttaggagc tttggtcagt 1260 tcagagggtc tcctagagaa atttgaatct accaaaaata ctttacaggc agcacacagt 1320 gtcagcgtaa gctcaagacc cagacccgag cgaaatatcc tcaccttggg cagtagcttc 1380 cgaagacgga ctggcacttt taccttaaaa ggccaggcca agaaaagatt taatctctta 1440 ggaattagta aaagagcagc taatgacacc cagaggatgt acatgaaaca ctttagaacc 1500 caggtgaaga caagtgaggc agagtccgtg gccaaacacg tggaaacaag tggcagtgtc 1560 gacagtgtgt gtgtggcttc ctcagaaagt gcagacctga agcaggacca aagaagctcc 1620 catcgggcgt gctcctttag ctccatggtg gtgaggccag ctgccgatcg tcagatgtgg 1680 acttgtacag accgtggtca ggaggctaca aacaggacag agctgaagac ccacggggag 1740 agggcccccc ctggagaggt gaagcttcac tgccaggcct gtgacttttc cagcacgttg 1800 aggagggact tggacaggca ttcacatgac agccagcacc agcacgctgc cgctggcctc 1860 aggtgtcagt gctgttcatt tatttctgag gatgaactaa gtctcagaga ccacatgaag 1920 gaaaagcaca agatgggttt tctttgcgct ccctgcaatc tattcttctt gtctgagaaa 1980 gacctggaag aacatgcaat ggctgagaag cacgtttgtt tactggttca accaaagact 2040 tctcagtcct ttaacagtga tttggctttg cagaccttac ccttaagttc tttagaatct 2100 gagaacatga aagatcaaat gagcgagtca ggtaaagcag ctcaggagga agcaggtaag 2160 cccagggtga gccatggaca cgaagtaagg cattcaagta agcctcagtt tcagtgtaag 2220 aagtgttttt ataaaacgag gtcctccact gttctcacga gacacataaa gctccggcat 2280 ggtcaggact accactttct ttgtaaagcg tgtaatcttt attcgctgag caaggaggga 2340 atggagaagc acattaagag aagcaagcat cttgaaaatg ccaagaaaaa caacattggc 2400 ttaagttttg aagagtgtat tgaaagggtg tgtataggtg caaatgacag aaaagaggag 2460 cttcacgttt ctggaaatgg aagaatagaa ggccacatgg aaggggtgca gttgcaggag 2520 tcttcctgtc ttgaaaagag tgtactgact agcaaggaag tgccacagcc tggtgtgacg 2580 gccagggagg gtgaagtagc tttgactgct acttcaaaga gagggagacc caaaggtaac 2640 atctctcgga catgctctca ctgtggtctc ttggcctcca gtatcacaaa cctgactgtt 2700 cacattcgac ggaaacacag tcaccagtat agttatttat gcaaagtgtg taagtattat 2760 actgtgacca agggagatat ggaacgtcat tgtgccacta agaaacataa aggacgtgta 2820 gaaatagaag caaatggcaa gcaaagttca gatatcattg ttggccccga agggggtaac 2880 ctggaagcct gcagaaggaa tgccatctca gcaggttctg atgaacttgc taataagtca 2940 gctgaatcag atacgtgcac ctcagaaaag ccaggagcag agcacggaaa tccaactgaa 3000 gtggaagttg aaaatgtatt tcattctaca gatggggaag tcaacagtca cctgactgat 3060 aaaaaggaac aaatgtctct agaaccagag gaccctcctc agcaggggga tgcatgctcc 3120 cagagagatg gtgtgggtac aggtgataat aagtgtgttc actgtgactt taatgctcac 3180 tcttctgctt ctctggaact gcacataaaa cggaaacata caaaagaatt tgctttttat 3240 tgcatggcct gcgattacta tgctgtgact cgccgagaga tgaccagaca cgcggccaca 3300 gagaaacaca agatgaaaag gcagtcttac ttaacctctt ctgacataga agcaagttct 3360 gcagatgtgt ccaaaaatat catcatccca gaggagcagc atcaacacag ttctgaagaa 3420 tatcagataa tttcagacca atcatctgaa gaaattctga gatctaaaaa taatgctgat 3480 gtttgtgttt tggatgagga tactagtcta gatgtgtcta agatactccg tgctcccaac 3540 tctgtagaga ttgagactga agaagaatct aatctcagtg aagatcattc cttctgtgga 3600 aatttccaac agcccctggc caaggataaa gctctgaaac ctgaggagat ggtgtccttt 3660 aatatttcct ctaattgtgg ctccccaagc agatttcaga atgaaaattc aggaagctcc 3720 actttggatt atgaggcagt agagagagcc cgtggcgtgt tgaatgacac tggtgatccg 3780 agcacgccta gtgagagaga tgttggggag gcgggggaga atgcagagaa aggcctcggc 3840 agacctggtg tagggggaag gcatctggct gaaagcacca tgcctgttgt gatgacgggg 3900 acaaggcagg agctggacct ggaaagcagt ggtcagaacg aggttggaag tgcgcagaat 3960 ccggaggatt tgaaagatag tggtgaaggc ccagttatgg agaacaagga aattctgatg 4020 aattcccaac atgaaactaa aattattttg gaagaggacg gtccagcttc tgatagcaca 4080 gttgaaagta atgatgtcta tgaaactata atcagtattg atgacagagg acaggccatg 4140 tatagttttg gccggtttga ttcttccata ataaggataa agaaccctga agatggagaa 4200 ttgttagacc agtctgaaga gggtctgata acaacagggg tgagaatcag tgaattgccc 4260 ttgaaagact gtgctcaagg tatgaaaaag aagaaatctg acggtggctc ctttggggaa 4320 tccacacgaa ttcggtgtga tgattgtggc ttcttagcag atggcttgag tggactgaat 4380 gttcacatag ccatgaaaca ccctacaaag gagaaacact tccattgttt actgtgtgga 4440 aagtcattct atactgagag caaccttcat cagcatctgg ccagtgctgg gcacatgagg 4500 aatgagcagg ccagtgtaga ggagcttcca gagggcgggg ccacctttaa atgtgtcaag 4560 tgtacggagc cctttgattc agagcagaat ttatttctgc atattaaagg ccagcatgaa 4620 gaactgctcc gcgaggtgaa caagtacata gtggaagaca ctgagcaaat caaccgcgag 4680 agggaagaaa atcaaggcaa tgtttgcaag tactgcggga agatgtgtcg aagtagcaac 4740 tcgatggcat ttctagcgca tattcgcact catacaggtt ctcactag 4788 // ID NC006583_186; SV 1; special; RNA; MAM; 1230 BP. XX AC NC006583_186; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_186; NC006583_186. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..1230 FT /organism="Canis familiaris" FT CDS 1..1230 FT /protein_id="NC006583_186" FT /db_xref="trGEN:NC006583_186" FT /translation="MVCPVVHLIQDLPVNIKFIIEGMEEAGSVALEELVRKEK FT DRFFSSVDYIVISDNLWLTQRKPALTYGTRGNSYFRVEVFASPRSLVDSSGHI FT LIPGIYDQVAPLTEEERKLYKAIDLDLEEYRNSSRVERFLFDTKVKQHLEHVF FT SKRNSSNQMAVSMMLGLQPWIANIKDNQYLAAKRAIKTVFGTEPDMIRDGSTI FT PIAKIFQDSIQKSVMMLPLGAVDDGEHSQKEKINRACDPEGPSRSHRRVFLRR FT WGCARARPSTRPSARDLGAHSDGERTTRRSGEEAGPAGKFLLPRPLEINPKGP FT SWTDTARRPPGHASPLAEIDSFGLPFPSSGEGGGGGTSGCISEWFPARADGPK FT RRRHTGRPATRGRNGELDVLSLNQFRDPVSWSWCPALGPPRRRPGNRRKSLA" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '-' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..247 FT /number=1 FT /note="FIRST EXON; p-value: 0.445." FT exon 248..408 FT /number=2 FT /note="INTERNAL EXON; p-value: 0.664." FT exon 409..550 FT /number=3 FT /note="INTERNAL EXON; p-value: 0.977." FT exon 551..698 FT /number=4 FT /note="INTERNAL EXON; p-value: 0.929." FT exon 699..1230 FT /number=5 FT /note="LAST EXON; p-value: 0.525." FT CONTIG join(NC_006583:7892038...7891792, 7884867...7884707, FT 7882243...7882102, 7879121...7878974, 7871520...7870989) XX SQ Sequence 1230 BP; 288 A; 333 C; 360 G; 249 T; other; atggtttgtc ctgttgttca tttgattcag gatctccctg tgaatatcaa attcatcatt 60 gaagggatgg aagaagctgg ttctgttgcc ctggaggaac tggtcagaaa ggaaaaggat 120 cggttctttt ccagtgtaga ctacatcgta atttcagata acctgtggct cacccaaagg 180 aagccagccc tcacttacgg gactcgaggg aatagttact tcagggtgga ggtatttgca 240 agccccagga gccttgtgga ctcatccggt catattctga tccctggaat ctatgaccaa 300 gtggctcctc ttactgaaga ggagagaaaa ctgtacaaag ccatagatct ggacctagaa 360 gaataccgga acagtagccg ggttgagaga tttctgtttg acaccaaggt gaagcagcat 420 cttgaacacg tattctccaa aagaaatagt tccaaccaga tggctgtttc tatgatgcta 480 ggactacagc catggattgc aaatattaaa gataatcagt atcttgcggc aaaaagagcc 540 atcaaaacag tgtttggaac agagccagac atgatccggg acggatcaac cataccgatt 600 gccaaaatat tccaggattc catccaaaag agtgtgatga tgctcccgct gggtgctgtg 660 gatgatgggg agcactctca gaaggagaaa atcaacaggg cctgcgaccc cgagggtccc 720 tcccggagcc accggagagt cttcctccga cgctggggct gcgcacgcgc ccggcccagc 780 acccgaccct cggcccgcga cctcggggcc catagcgacg gcgagcgcac gacgcggcgg 840 agtggggagg aggcaggacc cgccggcaag ttcctgctcc cgcgccctct ggaaatcaat 900 cccaaggggc cctcctggac cgacaccgcg cgccgtccgc ccggacacgc gtctcccctc 960 gcggagattg actccttcgg ccttccgttt ccctcttcgg gggagggagg ggggggaggg 1020 acttccggct gtatctccga gtggtttccg gcaagagccg atgggccgaa aagaaggcgg 1080 cacacgggtc ggccggccac tcggggcaga aacggggaac tcgatgtgct ttcgctaaac 1140 cagttccggg accctgtttc ttggtcgtgg tgtccggcgc tcggtccgcc acggaggcga 1200 cctgggaacc gccggaagtc gctcgcatga 1230 // ID NC006583_187; SV 1; special; RNA; MAM; 3006 BP. XX AC NC006583_187; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_187; NC006583_187. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..3006 FT /organism="Canis familiaris" FT CDS 1..3006 FT /protein_id="NC006583_187" FT /db_xref="trGEN:NC006583_187" FT /translation="MSALTTLFKYVDENQDRYIKKLAEWVAIQSVSAWPEKRG FT EIRRMLEVAAADIKQLGGSVELVDIGKQKLPDGSEIPLPPILLGKLGSDPQKK FT TVCIYGHLDVQPAALDDGWDSEPFTLVERDGKLYGRGATDDKGPVAGWLNALE FT AFQKTNQEIPVNVRFCLEGMEESGSEGLDELIFSRKDTFFKDVDYICISDNYW FT LGKKKPCITYGLRGICYFFIEVECSDKDLHSGVYGGSVHEAMTDLIMLMGSLV FT DKKGKILIPGISEAVAPVTEEELELYDKIDFDMEEYTRDVGAETLLHGCKKDI FT LMHRWRYPSLSLHGIEGAFSGSGAKTVIPRKVVGKFSIRLVPNMTPEVVTGYL FT TKKFAELHSPNKFKVFMGHGGKPWVSDFNHPHYMAGRRALKTVFGVEPDLTRE FT GGSIPVTLTFQEATGKNVMLLPVGSADDGAHSQNEKLNRLLGEENSGGWSVVT FT RGQYSATVVVGQRALSERFWWKAEMGPPQSAGCPCSSLSRAHEADVAHVQHRS FT PGPATTEHRLCHLFKMPRHPEGLPIQLQQIVCTVRAQNWGLRGCGLWTRKEGL FT MQNDEQIHWSTHVEANGGYLSFPMPEQYSIVYINHIFFIHSSFDGHRGSFHSL FT AIVDIAARNIGVQATCRRLMRSGGQAWNLRAALGSGREDEESLCFEVKASSLC FT RQHPDFCRALRSVSHPAGASIHPVNPRRKVGQASSLLASLLLLEGGMFSPSSP FT PAGLLEKVFQYIDLHQDEFVQTLKEWVAVESDSVQPLPHLRQELFRMMALAAE FT QLRCLGASVDSVDSGFQQLPDGQTLPIPPIILAELGNDPKKPTVCFYGHLDVQ FT PARREDGWLTDPYTLTEVDGKLYGRGATDNKGPVLAWINAVSTFRALEEVGNQ FT PCLGRDDVDNSDCEDNDDNDDVGSEGDDDDSDDNDDVMDNDDGIDNGGEDDDD FT DNDNMKDDDVGNDNDGDEDKNHNDDDDVDNDGEGSGDNNNDDGDNYDSDDEDN FT DNHDSDDD" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '-' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..60 FT /number=1 FT /note="FIRST EXON; p-value: 0.602." FT exon 61..204 FT /number=2 FT /note="INTERNAL EXON; p-value: 0.972." FT exon 205..367 FT /number=3 FT /note="INTERNAL EXON; p-value: 0.976." FT exon 368..456 FT /number=4 FT /note="INTERNAL EXON; p-value: 0.999." FT exon 457..657 FT /number=5 FT /note="INTERNAL EXON; p-value: 0.648." FT exon 658..742 FT /number=6 FT /note="INTERNAL EXON; p-value: 0.961." FT exon 743..903 FT /number=7 FT /note="INTERNAL EXON; p-value: 0.983." FT exon 904..1056 FT /number=8 FT /note="INTERNAL EXON; p-value: 0.702." FT exon 1057..1198 FT /number=9 FT /note="INTERNAL EXON; p-value: 0.993." FT exon 1199..1346 FT /number=10 FT /note="INTERNAL EXON; p-value: 0.995." FT exon 1347..1469 FT /number=11 FT /note="INTERNAL EXON; p-value: 0.278." FT exon 1470..1593 FT /number=12 FT /note="INTERNAL EXON; p-value: 0.025." FT exon 1594..1733 FT /number=13 FT /note="INTERNAL EXON; p-value: 0.422." FT exon 1734..1905 FT /number=14 FT /note="INTERNAL EXON; p-value: 0.343." FT exon 1906..2021 FT /number=15 FT /note="INTERNAL EXON; p-value: 0.158." FT exon 2022..2121 FT /number=16 FT /note="INTERNAL EXON; p-value: 0.032." FT exon 2122..2247 FT /number=17 FT /note="INTERNAL EXON; p-value: 0.849." FT exon 2248..2397 FT /number=18 FT /note="INTERNAL EXON; p-value: 0.998." FT exon 2398..2560 FT /number=19 FT /note="INTERNAL EXON; p-value: 0.994." FT exon 2561..2770 FT /number=20 FT /note="INTERNAL EXON; p-value: 0.653." FT exon 2771..3006 FT /number=21 FT /note="LAST EXON; p-value: 0.975." FT CONTIG join(NC_006583:7931180...7931121, 7930056...7929913, FT 7926043...7925881, 7925251...7925163, 7923615...7923415, FT 7922397...7922313, 7921335...7921175, 7919347...7919195, FT 7918345...7918204, 7918072...7917925, 7917773...7917651, FT 7914276...7914153, 7906777...7906638, 7905331...7905160, FT 7904418...7904303, 7904110...7904011, 7899440...7899315, FT 7896156...7896007, 7895218...7895056, 7894346...7894137, FT 7894123...7893888) XX SQ Sequence 3006 BP; 722 A; 719 C; 898 G; 667 T; other; atgtcggccc tcactaccct gtttaagtat gtcgatgaaa atcaggatcg ctacattaag 60 aaactcgcag aatgggttgc catccagagt gtatctgcat ggcctgagaa gagaggtgaa 120 atcagaagga tgctggaagt tgccgccgca gacatcaagc agttgggtgg ctctgtggaa 180 ttggtagata ttggaaaaca gaagctcccc gatggttctg agatcccact tcctcccatt 240 ttacttggca agctgggctc tgacccgcag aagaaaaccg tgtgtattta cggacaccta 300 gatgtgcaac cagcggccct ggatgatggc tgggacagtg agcccttcac cttggtggag 360 cgtgacggca aactgtatgg gagaggtgcg accgatgata agggtccagt ggccggctgg 420 ctgaatgccc tggaagcctt ccagaagaca aatcaggaaa ttccagtcaa tgtccggttc 480 tgcctggaag gcatggagga gtcaggctcc gaaggcttgg acgaactgat tttttcccgt 540 aaagacacat tctttaaaga tgtggactac atctgcattt ctgacaatta ctggctgggg 600 aagaagaagc cctgtatcac atatggtctc aggggcattt gctacttctt cattgaggtg 660 gagtgcagtg acaaggacct ccattctggc gtgtatgggg gctcggtgca tgaggccatg 720 acggatctca tcatgctaat gggctctctg gtggacaaaa aaggaaagat cctcattccc 780 ggcatcagcg aggcagttgc ccccgtgaca gaggaggagc tggaactcta cgacaagatt 840 gactttgaca tggaggagta caccagggac gtgggggcag agactctgct gcacggctgc 900 aagaaagaca tcctgatgca caggtggcgg tacccgtccc tctctctcca tgggatcgaa 960 ggcgcctttt ctggatctgg ggccaagacc gtgattccta ggaaagtggt cggcaagttc 1020 tccatccggc tcgtgccaaa catgactccc gaagttgtca cgggctacct gacgaagaaa 1080 tttgctgagc tgcacagccc caacaagttt aaagtgttca tgggccacgg tgggaagccc 1140 tgggtgtctg acttcaacca ccctcattac atggctggga gaagagcctt gaagacagtg 1200 tttggcgtcg agcccgactt gacccgggaa ggtggcagta ttcctgtgac tttgaccttt 1260 caggaggcca cggggaagaa cgtcatgctg ctgcctgtgg gctcagctga tgacggcgcc 1320 cactcccaga acgagaagct caacaggctg ctgggagagg agaacagcgg ggggtggtct 1380 gtggttaccc gagggcagta ctctgctacc gtggtcgttg ggcagcgagc gctcagcgag 1440 cgcttctggt ggaaggcaga gatggggccg ccccagtctg cgggatgtcc ttgcagcagc 1500 ctgagcaggg ctcatgaggc tgacgtagct cacgtgcagc atcggtcacc ggggcctgcg 1560 acaacagagc acaggctctg ccacctgttc aagatgcccc ggcacccaga gggcctcccc 1620 attcagctgc agcagatagt gtgcactgtg cgggcacaga actgggggtt gcgaggctgt 1680 ggattatgga caaggaagga gggcctcatg cagaacgatg agcaaatcca ctggtccacc 1740 cacgtggaag caaatggtgg gtatttgtcg tttccaatgc ctgagcaata ttccattgtc 1800 tacataaacc acatcttctt tatccattca tctttcgatg gacaccgagg ctccttccac 1860 agtttggcta ttgtggacat tgctgctaga aacatcgggg tgcaggccac ctgcagacgc 1920 ctgatgcgtt cggggggcca ggcctggaac ctgcgcgctg ccctgggctc cggtcgtgaa 1980 gacgaggaaa gcctgtgctt tgaagtcaaa gcaagttctc tctgccgcca gcaccccgat 2040 ttctgtcgtg ccctgagatc cgtcagtcac cctgcaggtg cttccattca tcctgttaac 2100 cctcgtagaa aagtcggtca ggcatcctct cttcttgcct ccctgctgct gctcgaggga 2160 ggcatgttct ctccatcctc accacctgcc gggctgttgg agaaggtctt ccagtacatt 2220 gatctccacc aggatgagtt cgtacagacg cttaaggagt gggtggctgt ggagagtgac 2280 tcggtccagc ccctgcccca cctgagacaa gaactcttca ggatgatggc cctggcggca 2340 gagcagcttc ggtgcctggg agccagcgtg gactccgtgg actcgggttt tcagcagctg 2400 cctgatggtc agactctccc aatacctccc atcatcctgg ctgaactggg gaacgatcca 2460 aagaaaccca ctgtgtgctt ctatggccac ttggatgtgc agcctgctag acgggaagat 2520 gggtggctca cagaccctta cacactgaca gaggtggatg gaaaacttta tggacgagga 2580 gcaacagaca acaaaggccc tgttttagca tggattaatg ctgtgagcac cttcagagcc 2640 ctggaggagg tagggaacca gccatgtttg ggaagggatg atgtcgacaa cagtgactgt 2700 gaggacaatg atgataatga cgatgttggt agtgaaggtg atgatgatga cagtgatgac 2760 aatgatgatg tgatggataa tgacgatggt attgacaatg gaggtgagga tgatgatgat 2820 gacaatgaca atatgaagga tgatgatgtc ggcaatgata atgatggtga tgaggacaaa 2880 aaccataatg atgatgatga tgttgacaat gatggtgagg gcagtggtga caacaacaat 2940 gatgatggtg ataattatga cagtgatgat gaggacaatg acaatcatga cagtgatgat 3000 gactag 3006 // ID NC006583_188; SV 1; special; RNA; MAM; 1476 BP. XX AC NC006583_188; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_188; NC006583_188. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..1476 FT /organism="Canis familiaris" FT CDS 1..1476 FT /protein_id="NC006583_188" FT /db_xref="trGEN:NC006583_188" FT /translation="MSGARGIAVKKAKRQHLEICDVTPCSRGISLASSVQLAY FT ESPICEYPKKPPLDRDFYQQAMKVKRNLCEGCAYMILMPQMAKLSLREVVSFI FT LIHTVEHFTFSSPPSSENILRGLREPESAAISYKGQNGSNSEQRCQEYQGGVL FT VGDLCEDLCVAGQLRYQRCLYYERGKKVLQATWRGRPIILKSKEEAFSSFQPL FT SLPEDAAEEGGPDALEAELHLLVAGEVRNALGLELSGGSLGPLWPGQRGGGRR FT GQLASLWALLQQEEFVLFSLLQDLSRHALPVLGSCGHFYAVEYLAAGSPRHRA FT LFPLEGAAGVPRGGRGQARAVSDMALSFLDMVSHFEDDFAHRLHLCDVKPENF FT AIRSDFTVVAIDVDMAFFEPKMREILEQNCTGDEDCNFFDCFSKCDLRVNKCG FT AERVNSNLQVICDKIFRHWFSSSLGSWAIPFPLQRQLRDAVQECADPWSMARS FT PPRAASDVFWKLRSLLRATQRELQEAEK" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '+' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..74 FT /number=1 FT /note="FIRST EXON; p-value: 0.099." FT exon 75..161 FT /number=2 FT /note="INTERNAL EXON; p-value: 0.567." FT exon 162..194 FT /number=3 FT /note="INTERNAL EXON; p-value: 0.867." FT exon 195..292 FT /number=4 FT /note="INTERNAL EXON; p-value: 0.317." FT exon 293..408 FT /number=5 FT /note="INTERNAL EXON; p-value: 0.811." FT exon 409..1092 FT /number=6 FT /note="INTERNAL EXON; p-value: 0.759." FT exon 1093..1257 FT /number=7 FT /note="INTERNAL EXON; p-value: 0.996." FT exon 1258..1476 FT /number=8 FT /note="LAST EXON; p-value: 0.956." FT CONTIG join(NC_006583:7951690...7951763, 7960235...7960321, FT 7961128...7961160, 7965312...7965409, 7968676...7968791, FT 7971431...7972114, 7976551...7976715, 7979584...7979802) XX SQ Sequence 1476 BP; 299 A; 419 C; 471 G; 287 T; other; atgtctggag ccaggggtat tgctgtgaag aaagcaaaaa gacaacacct ggaaatctgt 60 gatgtgaccc cctgctctag gggaatatct ttagcatcaa gtgtacagct ggcctatgag 120 tcacctatat gtgaataccc caaaaagccc cctttggaca gagacttcta ccagcaagcc 180 atgaaggtta aacgtaacct ctgcgaggga tgcgcttaca tgatcctcat gccacagatg 240 gcaaaactga gcctcagaga ggtagtgtca tttatcctga ttcacacagt tgaacacttc 300 accttttcat ccccaccttc ctctgagaat attctgagag gtctccggga gcctgagtca 360 gctgctattt cttacaaggg gcaaaatgga agcaattctg agcagagatg ccaggagtac 420 cagggcgggg tgctggtggg cgacctctgc gaggacctgt gcgtggcggg gcagctgcgg 480 taccagcgct gtctgtacta cgagcggggc aagaaggtgc tgcaggccac ctggcgcggc 540 cggcccatca tcctcaagtc caaggaggag gctttctcca gcttccagcc gctcagcttg 600 cccgaggacg cggccgagga gggcggcccg gacgccctgg aggcagagct gcacctgctg 660 gtggccggcg aggtcaggaa cgccctgggc ctggagctgt cgggcggcag cctggggccg 720 ctgtggccgg ggcagcgcgg cggggggcgg cggggccagc tggccagcct gtgggccctg 780 ctccagcagg aggagttcgt gctcttcagc ctcctgcagg acctgagccg gcacgccctg 840 cccgtgctgg gctcctgcgg ccacttctac gccgtggagt acctggccgc gggcagcccc 900 cgccaccggg ccctcttccc gctcgagggg gccgcggggg tcccccgggg tggccggggc 960 caggccaggg ccgtcagcga catggcgctc agcttcctgg acatggtgag ccacttcgag 1020 gatgactttg ctcaccgcct gcacctgtgc gatgtcaagc ccgaaaactt tgccatcagg 1080 agtgacttta cggtggtggc cattgatgtg gacatggcct tttttgaacc caaaatgagg 1140 gaaattctcg agcagaattg cacaggagat gaagactgta atttctttga ctgtttttca 1200 aagtgtgatt tgcgagtcaa caagtgtgga gcagaaagag tgaacagcaa cttacaggtc 1260 atctgcgaca agatattccg ccactggttc tcctcgagtc tggggagctg ggccataccc 1320 ttcccactgc agcggcagtt gcgggacgcg gtgcaggagt gcgccgaccc ttggagcatg 1380 gcccgcagcc ccccgagagc agcctctgat gtgttctgga agcttcggag tctcctccga 1440 gccacgcaga gggaactgca ggaggcagag aagtag 1476 // ID NC006583_189; SV 1; special; RNA; MAM; 693 BP. XX AC NC006583_189; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_189; NC006583_189. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..693 FT /organism="Canis familiaris" FT CDS 1..693 FT /protein_id="NC006583_189" FT /db_xref="trGEN:NC006583_189" FT /translation="MADLSCLSFSICEHIDVCSVVYQGCRGWNESVRGLLPAC FT PVSPWLCPEDTVRRQQTTNKAPTRNRSGWPLEFGHLAPRSVHEERMCAVHETL FT ESVLVLQQPKLTPRPSWLYTCPEGFSQCGCACHRASGRRVAANHSALGMQVPP FT EPGQRRLTCSRRHGHEAERQWLPVNPARQAVSSGDGPRLRTRTWASGQDDEAV FT APELVGWDRAHSQKPCFWFLVKLDLPPGGVTA" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '+' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..101 FT /number=1 FT /note="FIRST EXON; p-value: 0.617." FT exon 102..518 FT /number=2 FT /note="INTERNAL EXON; p-value: 0.185." FT exon 519..693 FT /number=3 FT /note="LAST EXON; p-value: 0.753." FT CONTIG join(NC_006583:7983102...7983202, 7983795...7984211, FT 7991321...7991495) XX SQ Sequence 693 BP; 127 A; 216 C; 217 G; 133 T; other; atggcagacc tttcttgcct cagtttctcc atctgtgaac acattgacgt ttgtagtgtc 60 gtatatcagg ggtgccgagg atggaatgag agcgtgcgtg gcctcctccc tgcctgtcct 120 gtgtctccct ggctctgccc tgaggacacg gtgagaaggc agcaaaccac caacaaagct 180 cccaccagaa accgaagtgg ctggcccctt gagttcggac atttagcccc gagatctgtg 240 catgaggagc ggatgtgcgc tgtccacgag accctggagt ctgtgcttgt gttgcagcag 300 cccaagctga ccccgaggcc ttcctggctc tacacctgcc cagagggctt ctcacagtgt 360 ggctgtgcct gccacagggc ctctggccgc agggtcgctg ccaaccactc agccctgggc 420 atgcaggtgc ctcccgagcc agggcagagg cggctcacct gcagtcgacg tcacggccac 480 gaagccgagc gccagtggct cccagtaaat ccagcacgcc aggctgtgag ctctggggat 540 gggccccggc ttcgcacccg gacctgggca tcaggccagg atgatgaggc ggtagcccca 600 gagcttgtgg ggtgggacag agcacacagc cagaagccgt gtttctggtt cctggtgaag 660 ctcgacctgc cccctggggg cgtgacagca tag 693 // ID NC006583_190; SV 1; special; RNA; MAM; 1587 BP. XX AC NC006583_190; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_190; NC006583_190. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..1587 FT /organism="Canis familiaris" FT CDS 1..1587 FT /protein_id="NC006583_190" FT /db_xref="trGEN:NC006583_190" FT /translation="MTTKACYYTQELMKPHVQENKTKAFNVTTKQMFSSSLTQ FT APSTRPALAEHLRWCSVAVDHKVELSGSHLKKPWVPSTLQLQQEAVQNRKKAL FT PDKAPQARSPARESRQRRGRKAEALPRIPPSSFRKSPSRARVYKALPTPTGSS FT GAQSQGRMHLRSAGPRRPSVHLRANKRMTRVRSQSPGTQQHGGLGAARARNSG FT LSTTRSKLPRTVLSTPAHGSAATLLTPGPAAQLSGNRKFLESFICVLMGMEPA FT FSGEPVDPGYRRILASKNQALGHSFFQNVVSMDWPLVSHCDSQFQMTSTKKSM FT THAPVSHKYPGGSSGPRSLASLWPRGLGSTFPGFLPFDLDKDQTPEHLSTVVI FT GVHPHGHLLDKASRPHHFTRTQESGLWQYRAMKSGHQIRSGGGSRPPTGPAAV FT RVSSSPLRASRPDPSALLVRSRPLFHTTLHESEAESPMVLDQRLRARWVNGEN FT STAATQLFTQDALTTWSGTSGLDVPRKTHTRIHYEPAWTLGNSRNICLLTPLP FT TDLKITCTIDLK" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '-' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..54 FT /number=1 FT /note="FIRST EXON; p-value: 0.266." FT exon 55..294 FT /number=2 FT /note="INTERNAL EXON; p-value: 0.558." FT exon 295..554 FT /number=3 FT /note="INTERNAL EXON; p-value: 0.621." FT exon 555..734 FT /number=4 FT /note="INTERNAL EXON; p-value: 0.399." FT exon 735..815 FT /number=5 FT /note="INTERNAL EXON; p-value: 0.061." FT exon 816..943 FT /number=6 FT /note="INTERNAL EXON; p-value: 0.032." FT exon 944..1150 FT /number=7 FT /note="INTERNAL EXON; p-value: 0.077." FT exon 1151..1295 FT /number=8 FT /note="INTERNAL EXON; p-value: 0.053." FT exon 1296..1401 FT /number=9 FT /note="INTERNAL EXON; p-value: 0.748." FT exon 1402..1587 FT /number=10 FT /note="LAST EXON; p-value: 0.957." FT CONTIG join(NC_006583:8043248...8043195, 8035077...8034838, FT 8017085...8016826, 8016299...8016120, 8007592...8007512, FT 8005482...8005355, 8000716...8000510, 8000017...7999873, FT 7995524...7995419, 7994526...7994341) XX SQ Sequence 1587 BP; 372 A; 508 C; 400 G; 307 T; other; atgacaacta aggcatgcta ctacacacaa gaactaatga aacctcatgt acaggaaaac 60 aaaaccaagg catttaatgt gaccactaaa caaatgttca gttcctctct gactcaggcc 120 ccttccacaa gacctgctct ggctgagcat cttcgatggt gttcagtagc tgtggaccac 180 aaggtggagc tttcaggcag ccatctgaag aagccttggg tgccctcaac tctgcagctc 240 cagcaagaag ctgttcagaa cagaaagaaa gccctacctg acaaggcacc ccaagcccgg 300 tcacctgccc gcgagagccg gcagcgcagg ggaagaaagg cagaggccct gccccgcatc 360 ccgccctcgt ccttccgcaa gtccccgtcg agggcccgtg tgtacaaggc ccttcccaca 420 ccgactggct cctcgggggc ccaatctcag gggagaatgc acctgaggag cgcaggacct 480 cggaggccct cagtacacct gagagcaaat aaacgcatga ctcgagtccg ctcccaaagc 540 cccgggacgc agcagcacgg tgggttagga gcagcccgag ccagaaacag cggcctgtcg 600 acaacacgct caaaactgcc ccggactgtg ctgtccacac cggcccacgg ctcagcagcc 660 accctgctga cccctggtcc agctgcgcag ctttcgggta accgcaagtt tttggaaagt 720 ttcatttgtg tcctaatggg gatggaacca gccttctcgg gggagcccgt ggaccctggc 780 taccgcagga ttctcgcttc caaaaatcag gctcttggtc acagcttctt tcagaatgtg 840 gttagcatgg attggcctct ggtgagccac tgtgactccc agtttcaaat gacctccacc 900 aaaaagtcca tgacacatgc cccggtctcc cacaaatatc ctggcggatc ctcagggccc 960 cgcagccttg cgtctctttg gccccgcggc ctgggctcta ctttccccgg cttcctgccc 1020 tttgacttgg acaaggacca gaccccagag catctctcca ctgttgtcat tggtgtccac 1080 ccacacggcc acttgctaga taaagcctcc agaccacatc atttcacacg gacacaagaa 1140 tctgggctat ggcagtacag ggccatgaag tccgggcacc agatccggtc tggcggtggt 1200 tcacggccac ccaccgggcc ggcggccgtg cgagtgtcct cgtcgcctct gcgggcctct 1260 cgcccggacc ccagtgcgct gctggtcagg tctcgccctc tgttccacac cacacttcat 1320 gaaagtgaag cagagtctcc catggttcta gatcaacgac taagggcaag atgggtcaac 1380 ggtgaaaata gcacagcggc tactcagctg ttcactcaag atgcattgac aacttggtca 1440 gggacctcag gcctagatgt tccaaggaaa acccacacta gaattcatta tgagcccgca 1500 tggaccctgg gaaacagcag gaacatctgt cttctgacgc ccttgccaac ggacctgaaa 1560 attacttgca ccattgacct caagtag 1587 // ID NC006583_191; SV 1; special; RNA; MAM; 1110 BP. XX AC NC006583_191; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_191; NC006583_191. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..1110 FT /organism="Canis familiaris" FT CDS 1..1110 FT /protein_id="NC006583_191" FT /db_xref="trGEN:NC006583_191" FT /translation="MLLEDMPRDLELGKCFPSLTREHGGLCSPNSVRRASPPN FT WHLQSESFSHCILLGILKLNPSEEELPPQRGPTIRGGARARVTLPRADTINQQ FT QLKGISQLLSGPTQTQMKLSKNLRLPESCAAGPGVSRVAAEPWAGVDSTVRGS FT FERVVDRPLFLARAAPNPPCLGAARRRSQPQSHSLPVPEPPAWTRLRSGPCLG FT SGRLQARAARPALLRPGALGADSSHAFICSQVHSPLRLGPRGASRCGKGLVHT FT GPRRGLAEGRGRDAGQGLCLSSPALPALAGSVSPLAPLRPPGDCLCPPGPEQG FT QWPKGRDTVTRRDAELWPWLGSPMGHGGSQWSLGTSKNAGHLLSSGLTLSQDS FT WNSKPEPDGKIE" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '+' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..70 FT /number=1 FT /note="FIRST EXON; p-value: 0.032." FT exon 71..317 FT /number=2 FT /note="INTERNAL EXON; p-value: 0.071." FT exon 318..504 FT /number=3 FT /note="INTERNAL EXON; p-value: 0.527." FT exon 505..687 FT /number=4 FT /note="INTERNAL EXON; p-value: 0.988." FT exon 688..845 FT /number=5 FT /note="INTERNAL EXON; p-value: 0.994." FT exon 846..903 FT /number=6 FT /note="INTERNAL EXON; p-value: 0.210." FT exon 904..1110 FT /number=7 FT /note="LAST EXON; p-value: 0.371." FT CONTIG join(NC_006583:8012734...8012803, 8015196...8015442, FT 8016122...8016308, 8016699...8016881, 8016918...8017075, FT 8017315...8017372, 8018022...8018228) XX SQ Sequence 1110 BP; 220 A; 330 C; 347 G; 213 T; other; atgcttcttg aggatatgcc cagagatctg gaactgggca aatgtttccc aagtctaaca 60 agagaacatg gtggtctgtg ctccccaaac tctgtgcgga gagcttcacc cccaaactgg 120 catcttcaga gtgaaagttt cagtcattgt attctgttgg ggattctcaa actaaatcct 180 agtgaagaag agctaccacc ccagcgtggg cccaccatca gagggggtgc cagagctcgg 240 gtgacccttc cccgggctga taccattaac cagcagcagc tgaaaggcat ttcccagctt 300 ctgtctggac ccacacagac acaaatgaaa ctttccaaaa acttgcggtt acccgaaagc 360 tgcgcagctg gaccaggggt cagcagggtg gctgctgagc cgtgggccgg tgtggacagc 420 acagtccggg gcagttttga gcgtgttgtc gacaggccgc tgtttctggc tcgggctgct 480 cctaacccac cgtgcctggg ggcggcaaga agacggtcgc agccgcagag ccacagcctt 540 cccgtcccgg aaccgccagc gtggacgcgg ctccggagcg ggccctgcct gggctcgggt 600 cggctacagg cccgggcagc ccgccccgca ctgctgcgtc ccggggcttt gggagcggac 660 tcgagtcatg cgtttatttg ctctcaggtg cattctcccc tgagattggg cccccgagga 720 gccagtcggt gtgggaaggg ccttgtacac acgggccctc gacggggact tgcggaagga 780 cgagggcggg atgcggggca gggcctctgc ctttcttccc ctgcgctgcc ggctctcgcg 840 ggcagcgtgt ccccactagc ccccctcagg ccacccgggg actgtctgtg cccacctgga 900 cctgagcagg gccagtggcc taagggcagg gacacggtca ctcgcaggga tgctgagctg 960 tggccctggc ttggcagccc catgggacat ggaggttccc aatggtcctt agggacatcc 1020 aagaacgcag gacatcttct ttcatcaggg ctgacgctga gtcaggactc gtggaattca 1080 aaaccggaac ctgatggaaa aatagaataa 1110 // ID NC006583_192; SV 1; special; RNA; MAM; 2136 BP. XX AC NC006583_192; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_192; NC006583_192. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..2136 FT /organism="Canis familiaris" FT CDS 1..2136 FT /protein_id="NC006583_192" FT /db_xref="trGEN:NC006583_192" FT /translation="MKLDHYLTPYTKINSKWMKDLNVIQDSIKILEKNTGNTL FT FELGHSNFLQDTSTKAKETKAKMNYWDFIKIRSFCTAKDTVNKTKRQPTEWEK FT IFANDLSDKGLVSKIYKELIKLNTKETNNPIMKWAKDMKRNLTEEDIDMANKH FT MRKCSLAIREIQIKTTMRYHLTPVRMGKINKAGNHKCWRGCGERGTLLHCWWE FT CELVQPLWKTVWRFLKELKIDLPYDPAIALLGIYPKDTDAVKRRDTCTPMFLA FT AMSTIAKLWKEPWCPSKDKWIKKMWSMCTMEYYSAIRNDKYPPFASTWMELEA FT SLAVTGTVSQDTSPCGDDYLQFEGKQQKISGFPPICFQKKSAILRLFLSKKFS FT DRSNLIRYSKSPSLSDSNNLKDKYMAPRGAAGRARPHLPGSQGAATPPRLSPV FT PSPVPRARPALPGSPGASCSPLRRRRRRRRRAAPLAAAPSMPRVPSQHARPPG FT TTALLAVLEAASARRMSHALPPACPRDKRALCVPERPVATEPSRTGRFRRALA FT PQPGASAPGHLSLLGQVLLAFTTIAEKGLNRPAAFRNGRAVGPDRQVLHPGRD FT PEAQPQQEHLVDPAPQGVRFDQVFGGGELEKRELSVVHSAVGLTCAQGGMCFP FT LCARERSWACVYVRLRPRGAPARTPAGARTQLCALCCTLGSGGDWASLVAARD FT GPAPPGVQDGGTGGWWEAQPRPELRKDFERSLSEFA" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '+' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..910 FT /number=1 FT /note="FIRST EXON; p-value: 0.115." FT exon 911..1036 FT /number=2 FT /note="INTERNAL EXON; p-value: 0.318." FT exon 1037..1146 FT /number=3 FT /note="INTERNAL EXON; p-value: 0.097." FT exon 1147..1328 FT /number=4 FT /note="INTERNAL EXON; p-value: 0.154." FT exon 1329..1466 FT /number=5 FT /note="INTERNAL EXON; p-value: 0.214." FT exon 1467..1596 FT /number=6 FT /note="INTERNAL EXON; p-value: 0.440." FT exon 1597..1640 FT /number=7 FT /note="INTERNAL EXON; p-value: 0.015." FT exon 1641..1866 FT /number=8 FT /note="INTERNAL EXON; p-value: 0.009." FT exon 1867..2136 FT /number=9 FT /note="LAST EXON; p-value: 0.910." FT CONTIG join(NC_006583:8048459...8049368, 8060642...8060767, FT 8060919...8061028, 8063779...8063960, 8064332...8064469, FT 8064823...8064952, 8071909...8071952, 8072699...8072924, FT 8073012...8073281) XX SQ Sequence 2136 BP; 573 A; 600 C; 552 G; 411 T; other; atgaaactag accattatct tacaccatac acaaagataa actcaaaatg gatgaaagat 60 ctaaatgtga tacaagattc catcaaaatc ctagagaaga acacaggcaa cacccttttt 120 gaactcggcc acagtaactt cttgcaagat acctccacga aggcaaaaga aacaaaagca 180 aaaatgaact attgggactt catcaagata agaagctttt gcacagcaaa ggatacagtc 240 aacaaaacta aaagacaacc tacagaatgg gagaagatat ttgcaaatga cctatcagat 300 aaagggctag tttccaagat ctataaagaa cttattaaac tcaacaccaa agaaacaaac 360 aatccaatca tgaaatgggc aaaagatatg aagagaaatc tcacagagga agacatagac 420 atggccaaca agcacatgag aaaatgctca cttgccatca gggaaataca aatcaaaacc 480 acaatgagat accacctcac accagtgaga atggggaaaa ttaacaaggc aggaaaccac 540 aaatgttgga gaggatgcgg agaaagggga accctcttgc actgttggtg ggaatgtgaa 600 ctggtgcagc cactctggaa aactgtgtgg aggttcctca aagagttaaa aatagatctg 660 ccctacgacc cagcaattgc actgctgggg atttacccca aagatacaga tgcagtgaaa 720 cgccgggaca cctgcacccc gatgtttcta gcagcaatgt ccacaatagc caaactgtgg 780 aaggagcctt ggtgtccatc gaaagataaa tggataaaga agatgtggtc tatgtgtaca 840 atggaatatt actcagccat cagaaacgac aaatacccac catttgcttc gacatggatg 900 gaactggagg cctctttagc agttactggg acagtgagtc aagacacgtc accctgcggg 960 gatgactacc ttcaatttga gggtaaacaa cagaaaatct caggttttcc acctatttgt 1020 ttccaaaaga agtcagcaat cttacgtttg ttcctctcca agaaattcag tgacagatct 1080 aatcttatca ggtattctaa gagtccttct ttgagtgact caaacaattt aaaggacaaa 1140 tacatggccc ccagaggggc ggctggcagg gctcgtcccc atctcccggg gagccagggc 1200 gcagcgaccc ctccccgtct gtcccctgtc ccctctcccg tcccgcgcgc gcggcctgcc 1260 ctccccggct cccctggggc ctcgtgttct cccctgcggc gacggcgacg gcgacggcga 1320 cgggccgccc ctctggcggc tgctcccagc atgccccgcg ttccttccca gcatgcccgg 1380 cctcctggca cgacggcgct cctcgctgtc ctcgaggctg cttccgcacg ccgcatgagc 1440 cacgcgctgc cgccagcatg ccccagagac aagcgcgccc tttgcgtccc tgaaaggccc 1500 gtggcaaccg aaccgtcccg gactggaagg ttccgccgtg ctttggcacc gcagccgggt 1560 gccagcgccc ctgggcacct ctccctcctg ggacaggtcc ttctggcatt cactaccatt 1620 gctgaaaagg gccttaacag gcccgccgct ttccgaaatg gccgagcagt cggaccagac 1680 cgtcaagtac tacaccctgg aagagatcca gaagcacaac cacagcaaga gcacctggtt 1740 gatcctgcac cacaaggtgt acgatttgac caagtttttg gaggaggtga gttggagaaa 1800 cgtgagctgt ctgtcgttca cagcgcggtg gggctgacgt gcgcgcaggg tgggatgtgc 1860 ttcccgctct gtgcccgaga gcgttcctgg gcgtgtgtgt acgtgcgcct ccggccccgg 1920 ggcgcccctg cacgcacacc ggccggtgca cgcacccagc tttgcgcgct gtgctgcacg 1980 ctcgggagcg ggggcgactg ggcgagcctg gtagccgccc gcgacgggcc cgcacctccg 2040 ggcgtgcagg acggcggcac cgggggttgg tgggaagcac agccgcgtcc cgagctgcgg 2100 aaggattttg aaagatccct ttcggaattt gcataa 2136 // ID NC006583_193; SV 1; special; RNA; MAM; 309 BP. XX AC NC006583_193; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_193; NC006583_193. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..309 FT /organism="Canis familiaris" FT CDS 1..309 FT /protein_id="NC006583_193" FT /db_xref="trGEN:NC006583_193" FT /translation="MCSEEHRTRKSLADTVSNDCTTTEGKDQEGRDLIGGEGE FT ANTKNPEPATLSGMVTRVDKSLIPTELDAADPSTALSPVLYLLLPMEGFGNRN FT HVSSSWVVVY" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '-' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..177 FT /number=1 FT /note="FIRST EXON; p-value: 0.980." FT exon 178..309 FT /number=2 FT /note="LAST EXON; p-value: 0.235." FT CONTIG join(NC_006583:8080644...8080468, FT 8075054...8074923) XX SQ Sequence 309 BP; 91 A; 67 C; 88 G; 63 T; other; atgtgctctg aggaacacag gacaaggaag agtctggcag atactgtaag caacgattgt 60 acgacaacag aagggaagga tcaagaaggg agagacctta ttggggggga gggggaggcc 120 aacaccaaga atcccgagcc cgcaacatta agtggaatgg tgacacgggt agacaagagt 180 ctgatcccaa ctgagttaga tgcagcagac ccaagcaccg cactctctcc tgtcctatac 240 ctgcttcttc caatggaagg ttttgggaac agaaatcatg tgtcttcctc ttgggttgta 300 gtctactga 309 // ID NC006583_194; SV 1; special; RNA; MAM; 1839 BP. XX AC NC006583_194; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_194; NC006583_194. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..1839 FT /organism="Canis familiaris" FT CDS 1..1839 FT /protein_id="NC006583_194" FT /db_xref="trGEN:NC006583_194" FT /translation="MLHRLIDKPYLSSHDLQGKQGEVIQMMLHPGGEEVLREQ FT AGGDATENFEDVGHSTDARELSKTFIIGELHPDDRAKINKPSSVDCFANGLSC FT ALGNCRDELSDGATLLTAISEALILSRETLITTVDSNSSKIVMPSLLKEISKA FT STLAPPRTFCTPAASVAVNAQGAESTGLFWSRALKCQPRPTPRPQVSIPIWLQ FT YPDLTAGAQPSLLSYVMGWIGTIMAGLIDLSRHLEGSTLLPHLNSLHHKCEYT FT LCSWWPPPVDSEGALSLELEMGLKFSFDQQLSKSTSTDLISDTLHGFCSPNWT FT LTDVGVVVMTPLPPVNPDSIFMALVNQWIPETVGPQEGRWRLRKGLLPQSVQT FT LTSFLVDWSFSGSLTNRVNNFQQMRSSPGVPGSHVMEFRMLELRGVLGIVWPM FT RVTRGLGGGWWHIPLPSLIRMLGGPLPSAHHQTSGPNWMGWASGDNKDLQSQT FT LEGMIRPPPLSLMVERPIVNGSFALTLVACVTVSGAGSVQNRHVEGLLLGHIG FT FHLNPPGPLKTQPIDFTPQMHLLSMADPQPVAPTQPRCLSKQPAPDPPKNSIP FT FPLAPGAGLTMEGTSYTDHGPFRPKCRALCSPRSVCLVPHSHG" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '+' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..84 FT /number=1 FT /note="FIRST EXON; p-value: 0.175." FT exon 85..213 FT /number=2 FT /note="INTERNAL EXON; p-value: 0.992." FT exon 214..243 FT /number=3 FT /note="INTERNAL EXON; p-value: 0.847." FT exon 244..357 FT /number=4 FT /note="INTERNAL EXON; p-value: 0.501." FT exon 358..392 FT /number=5 FT /note="INTERNAL EXON; p-value: 0.656." FT exon 393..480 FT /number=6 FT /note="INTERNAL EXON; p-value: 0.009." FT exon 481..646 FT /number=7 FT /note="INTERNAL EXON; p-value: 0.012." FT exon 647..828 FT /number=8 FT /note="INTERNAL EXON; p-value: 0.015." FT exon 829..936 FT /number=9 FT /note="INTERNAL EXON; p-value: 0.015." FT exon 937..1011 FT /number=10 FT /note="INTERNAL EXON; p-value: 0.005." FT exon 1012..1156 FT /number=11 FT /note="INTERNAL EXON; p-value: 0.021." FT exon 1157..1363 FT /number=12 FT /note="INTERNAL EXON; p-value: 0.028." FT exon 1364..1525 FT /number=13 FT /note="INTERNAL EXON; p-value: 0.831." FT exon 1526..1744 FT /number=14 FT /note="INTERNAL EXON; p-value: 0.878." FT exon 1745..1839 FT /number=15 FT /note="LAST EXON; p-value: 0.837." FT CONTIG join(NC_006583:8087060...8087143, 8100548...8100676, FT 8102531...8102560, 8105644...8105757, 8106583...8106617, FT 8122435...8122522, 8123666...8123831, 8129590...8129771, FT 8131361...8131468, 8136561...8136635, 8140322...8140466, FT 8140576...8140782, 8143407...8143568, 8144240...8144458, FT 8145097...8145191) XX SQ Sequence 1839 BP; 409 A; 494 C; 472 G; 464 T; other; atgctacata ggcttataga taagccttac ctctcctccc atgatcttca agggaaacaa 60 ggagaagtaa ttcagatgat gctgcatcct ggtggggaag aagtattaag ggaacaagct 120 ggaggggatg ctactgaaaa tttcgaggac gtggggcact ctacagatgc cagagaattg 180 tccaaaacat tcattattgg ggaacttcat ccggatgaca gagcaaagat aaacaagcct 240 tcgagtgtgg attgttttgc taacggctta tcatgtgctt tgggaaactg cagagatgag 300 ctctctgatg gagctacctt acttactgct atctctgagg cactaatact ttcgcgggaa 360 actctcatta ctactgttga ttctaattcc agtaaaatag tcatgccatc gcttttaaag 420 gaaattagca aggcttccac cctggctcct ccacgaacat tctgcacacc agctgcctca 480 gtggctgtga acgctcaggg cgctgagagc acaggcttgt tctggtcacg agcactgaag 540 tgccagcccc gtcccactcc ccgcccacaa gtgtccattc ccatctggtt gcagtaccca 600 gatttgactg caggagccca gccttcctta ctcagctatg tgatgggttg gattggtaca 660 atcatggcag gactgattga cctcagcagg catttagaag gcagcacact attgccccat 720 ctcaattccc tgcaccacaa atgtgagtac accctttgtt cttggtggcc gccgccagtt 780 gattcagaag gagcactgag tttggagttg gaaatgggcc ttaagttttc ctttgatcaa 840 cagcttagca aatccaccag cactgatttg atctcagata ctttgcatgg tttctgttct 900 cctaattgga ccctgactga tgtgggggtg gtggtgatga ctccccttcc ccctgtcaat 960 cccgactcca tcttcatggc cctggtgaat caatggattc ctgagaccgt gggtccacag 1020 gaagggaggt ggaggctccg taagggcctt ctccctcagt ctgttcaaac cttgacttca 1080 tttctggtgg actggagctt cagtggatct ttgacaaata gagtaaataa ttttcagcag 1140 atgaggagct ctccaggtgt tcctggatcc cacgtcatgg aatttaggat gctagagctc 1200 aggggggtct tggggattgt ctggcccatg agagtcacca gagggctggg aggaggctgg 1260 tggcacatcc ctctgccatc tctgatcagg atgcttggtg ggccattgcc ttctgctcat 1320 caccagactt cagggccaaa ttggatggga tgggccagcg gagacaataa ggacctgcag 1380 tcacagactc tggaagggat gatccgccct cctcccttgt cccttatggt agagaggccc 1440 atcgtcaatg ggtcattcgc tctgacattg gtggcctgtg taactgtgtc tggtgcgggg 1500 agtgtgcaga acagacacgt agaaggcctt ttactgggtc atatcggctt ccaccttaac 1560 cctcctggtc ctctgaagac acagcctatt gattttactc cccagatgca tcttctctcg 1620 atggcagatc cccagcccgt ggcccccact cagccccgct gcctcagcaa gcagcctgcc 1680 ccggaccccc cgaagaacag catccccttc cccttggcgc caggcgctgg gctgaccatg 1740 gagggtacct cttacactga ccatgggccc ttccggccta agtgccgagc cctgtgctcc 1800 ccgaggagcg tctgcttggt ccctcactct catgggtga 1839 // ID NC006583_195; SV 1; special; RNA; MAM; 603 BP. XX AC NC006583_195; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_195; NC006583_195. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..603 FT /organism="Canis familiaris" FT CDS 1..603 FT /protein_id="NC006583_195" FT /db_xref="trGEN:NC006583_195" FT /translation="MVQRLTYRRRLSYNTASNKTRLSRTPGNRIVYLYTKKVG FT KAPKSACGVCPGRLRGVRAPQCPRPGEPPEAEHWHPGLATMWPSGPFRVPAHP FT TVPGGGGQHQFRGSGHTQLSPLFARCRAGTVSQSSISLTLTTLDITGQLCGWR FT SPSPGVANVMEGEPCSPASSQGRESACSWCCSLQLWGEGGTCQASPRKVTPSH FT CR" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '+' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..174 FT /number=1 FT /note="FIRST EXON; p-value: 0.211." FT exon 175..603 FT /number=2 FT /note="LAST EXON; p-value: 0.083." FT CONTIG join(NC_006583:8157116...8157289, FT 8159758...8160186) XX SQ Sequence 603 BP; 109 A; 191 C; 170 G; 133 T; other; atggttcagc gtttgacata ccgtcgtagg ctgtcctaca atacagcctc taacaaaact 60 aggctgtccc gaactcctgg caatagaatc gtttaccttt ataccaagaa ggttgggaaa 120 gcgccaaagt ctgcatgtgg cgtgtgtcct ggccgacttc gaggagttcg tgcgccacag 180 tgcccaaggc caggagagcc gccagaggca gagcactggc acccaggcct tgccaccatg 240 tggccctcag gtcccttccg agtcccagct catcccactg tccctggagg gggtgggcag 300 caccagttca ggggctcggg ccacactcag ctgtctcctc tcttcgccag gtgtcgggct 360 ggaactgttt ctcagagctc catctccctg actctcacga ccttggacat cacaggccag 420 ctgtgtggct ggaggtctcc cagtcccggt gtggctaacg tcatggaagg ggagccgtgt 480 tctcctgcct cttctcaggg acgcgaatcc gcctgttcct ggtgctgttc cctgcagctg 540 tggggtgaag gtggcacctg ccaggcttct ccccggaaag tcaccccttc ccactgccga 600 tga 603 // ID NC006583_196; SV 1; special; RNA; MAM; 276 BP. XX AC NC006583_196; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_196; NC006583_196. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..276 FT /organism="Canis familiaris" FT CDS 1..276 FT /protein_id="NC006583_196" FT /db_xref="trGEN:NC006583_196" FT /translation="MRGDESGDIEAEKDRGYQEAEFCGLGIPDVRCSEGSVYN FT RARAPQSQTNDSHGFSTNHLLIRIALELFETGRLSGGLGRTLSLDLEPICII" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '-' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..66 FT /number=1 FT /note="FIRST EXON; p-value: 0.144." FT exon 67..233 FT /number=2 FT /note="INTERNAL EXON; p-value: 0.178." FT exon 234..276 FT /number=3 FT /note="LAST EXON; p-value: 0.169." FT CONTIG join(NC_006583:8167931...8167866, 8166333...8166167, FT 8165873...8165831) XX SQ Sequence 276 BP; 74 A; 62 C; 78 G; 62 T; other; atgagaggtg atgaaagtgg ggatattgag gcagaaaaag accggggata ccaggaagca 60 gaattctgtg gcctgggcat ccccgacgtt aggtgctccg agggctcagt gtacaatagg 120 gctcgagcac ctcagagcca gaccaatgac tcccatggtt tttccacaaa tcacctgctc 180 atcagaatag ctttagagct ttttgaaact ggacggcttt cagggggcct gggaagaaca 240 ctgtcactgg atttagagcc catctgtatc atctag 276 // ID NC006583_197; SV 1; special; RNA; MAM; 1557 BP. XX AC NC006583_197; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_197; NC006583_197. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..1557 FT /organism="Canis familiaris" FT CDS 1..1557 FT /protein_id="NC006583_197" FT /db_xref="trGEN:NC006583_197" FT /translation="MILFIHERHRERQRHKQREKQAPRGEPHAGLDPRTLGSR FT PELKADAQPLSPQRRGTWGAQQVKQLSLGWGSGRGLELGVGLSAVSARVPSLR FT SPCSHTLAQIHTSLKKKNEEEQISSQTRNRATVQATERTRDTSRECFIDFKSA FT GDKNLCLCSKTIHFFTDFKAFTRLADGNEEPTLHVPDFNTCVVWGRFHSLPPH FT LVPDAQRHSFERVTDLRMGRCVPVCDCPPSPPVLFTHERDTQRERQRHRQREK FT QAPRREPDVGLNPGSPESGPGLKGVGTLGDANSWLVLAPYRLFSWTVRSDALG FT GEWGRAELCARTTPRVLGNRACGGLAVSSGSIVFDDDSSSRVGLKFNKYVSKF FT IFATFWVLKNKHISWCNFCPQSLCPAASEPLILLRPPKVPTRSPQSPTRSPPS FT PTRSPYLLHFKMHCSLFPRLGALNVELHTHVFQPILYIFNKTAKKMEERGLNF FT CHLNKRPSFLNTCERVPDVLSPSTARRLPVALHGLPEDADDLWDRLGEASTLQ FT AS" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '+' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..3 FT /number=1 FT /note="FIRST EXON; p-value: 0.056." FT exon 4..156 FT /number=2 FT /note="INTERNAL EXON; p-value: 0.079." FT exon 157..409 FT /number=3 FT /note="INTERNAL EXON; p-value: 0.081." FT exon 410..550 FT /number=4 FT /note="INTERNAL EXON; p-value: 0.031." FT exon 551..690 FT /number=5 FT /note="INTERNAL EXON; p-value: 0.020." FT exon 691..822 FT /number=6 FT /note="INTERNAL EXON; p-value: 0.091." FT exon 823..904 FT /number=7 FT /note="INTERNAL EXON; p-value: 0.085." FT exon 905..1557 FT /number=8 FT /note="LAST EXON; p-value: 0.331." FT CONTIG join(NC_006583:8171903...8171905, 8172106...8172258, FT 8173307...8173559, 8174523...8174663, 8175413...8175552, FT 8176589...8176720, 8177096...8177177, 8177762...8178414) XX SQ Sequence 1557 BP; 365 A; 438 C; 411 G; 343 T; other; atgattttat ttattcatga gagacacaga gagaggcaga gacacaagca gagggagaaa 60 caggctcccc gcggggaacc ccatgcagga ctcgatccca ggaccctggg atcacgacct 120 gagttgaagg cagacgctca accactgagc ccccagagac gcggcacctg gggggctcag 180 caggttaagc agctgagtct tggttggggc tcaggtcgtg ggctcgagct cggcgtgggg 240 ctcagcgcgg tgtctgctcg ggtcccctcc ctccgctccc cctgctcgca cacactcgca 300 caaatacaca ccagtcttaa aaaaaaaaat gaggaagaac agataagtag ccaaactcgt 360 aacagggcta cagttcaggc tacagagagg acgagagaca caagcagaga atgttttatt 420 gactttaagt cagctgggga caaaaacctg tgtttatgtt ctaagaccat tcacttcttt 480 actgatttca aagcgttcac ccgtctggca gatggaaacg aggagcccac gctgcacgtt 540 cctgatttca acacttgtgt ggtgtggggc agattccact cccttcctcc ccacctggta 600 cccgacgccc agcgccattc gtttgagcgt gtgactgacc tccgcatggg taggtgtgtc 660 ccggtctgcg actgtccgcc gtccccacca gttttattta ctcatgagag agacacacag 720 agagagaggc agagacacag gcagagggag aagcaggctc cacgcaggga gcctgacgtg 780 ggactcaatc ccgggtctcc agaatcaggc cctggactga agggcgtggg gacactcggt 840 gatgccaatt cgtggttggt gcttgcacct taccgcttgt tcagctggac agtgaggtca 900 gacgccttgg gaggagagtg gggaagggcg gagctgtgtg cccgcaccac tccacgtgtg 960 cttggaaacc gtgcttgcgg gggtcttgca gtcagctcag gatcgattgt cttcgatgat 1020 gatagttctt ctagggtggg gctcaagttc aacaaatatg tatcgaaatt catattcgcc 1080 actttctggg ttctgaaaaa taaacatatt tcttggtgta acttctgtcc ccagagctta 1140 tgtcctgctg cgtcagagcc cttgatcctc ctaaggcccc ctaaagttcc cacaaggtcc 1200 ccacaaagtc ccacgaggtc tccaccaagt cccacaaggt ccccatacct ccttcacttc 1260 aagatgcact gttccttgtt tcccaggctc ggagccctca atgtagaact tcacacgcat 1320 gtgtttcagc ccatccttta catattcaat aaaactgcca agaaaatgga agagcgtggc 1380 ttaaacttct gtcacttaaa caagcgcccg agcttcctga acacatgtga acgggtacct 1440 gacgtgctgt ctccgtccac ggcgcgtcgc ctccccgtag cccttcacgg gctccccgaa 1500 gatgctgatg acctgtggga cagactcggt gaggcctcca cccttcaagc ttcctag 1557 // ID NC006583_198; SV 1; special; RNA; MAM; 2574 BP. XX AC NC006583_198; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_198; NC006583_198. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..2574 FT /organism="Canis familiaris" FT CDS 1..2574 FT /protein_id="NC006583_198" FT /db_xref="trGEN:NC006583_198" FT /translation="MEFRKGICLARADNRINLEYEAPATNRPQLKPDAVFKRA FT LLSTKCGGNNGFPDDLHSFSAHRAARKKVQIMITENRSALQRATAAGKAPGLQ FT LPQCKAARQRVAFPPPSRVPCACAPPIWRQGGRGDRSTGGNQISDYELGVLAA FT LREDCKLRNSQSDYGSAVALQERSREPREDVPSTWKHAETPRPDTSSLAPPHP FT GNRLPPSLHSVVGAVGSWEPWSSASCGMRSTCEGRGRPCLGAKLLVNKVHPQS FT NDILVNWMYGMDTLDFSHMLGGRKRPGTSYAGTATLKQCARRGRHYKQPSADH FT PASLERKGAAHLRSGDEQPVVFWLTCSSNARFFPSLSMPSEILLKIFSYLDAV FT TLLCTGCVNRRFYHLANDNFIWIRIYSTAFSPKISNWQVNSAEKTTVSMNLLS FT VEDKEAGYWKKEYIAKQRASVKAALARVLKPVNPYTGLPVKTKEALRISGLGW FT VIILKEKNGKEYIMQHIDLLINDSSVTIIWYGRNWPQLATLSTLDLCGVTPVF FT RDRSKPPSKNGPYELPPHTPLLDDNPEYGLHGYQLHVDMHSGGVFYLCGTFRN FT LFTKKEGIGPKLSQWEIPRMSSMSAAHKQGPCIWQGCLPHPLEAIPHAPWLWI FT PTLVWTHLAAAPHRHVAVDTVSVLACKVWPRQSLPSKVSEGQGGNRGTSRRLG FT PCCCPVMTRCLDCCTSTERCPSRFAGGAAVTWVIPGVSTLGGAQRPTPCPWIL FT QSSLVSEGMEVISYGEGTRWRRSCLVQTQLSLAAEGLNAARSCSIMDITLLDE FT YGKPFWCLSSPVCMRSSVPSDGPNFLGQTYCVDYVDSEGKVHVELVWIKETEE FT YFIVSLVLYLKIAKINHWFGTAY" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '+' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..80 FT /number=1 FT /note="FIRST EXON; p-value: 0.557." FT exon 81..242 FT /number=2 FT /note="INTERNAL EXON; p-value: 0.255." FT exon 243..493 FT /number=3 FT /note="INTERNAL EXON; p-value: 0.330." FT exon 494..698 FT /number=4 FT /note="INTERNAL EXON; p-value: 0.480." FT exon 699..821 FT /number=5 FT /note="INTERNAL EXON; p-value: 0.349." FT exon 822..929 FT /number=6 FT /note="INTERNAL EXON; p-value: 0.997." FT exon 930..1127 FT /number=7 FT /note="INTERNAL EXON; p-value: 0.064." FT exon 1128..1370 FT /number=8 FT /note="INTERNAL EXON; p-value: 0.127." FT exon 1371..1580 FT /number=9 FT /note="INTERNAL EXON; p-value: 0.647." FT exon 1581..1723 FT /number=10 FT /note="INTERNAL EXON; p-value: 0.532." FT exon 1724..1880 FT /number=11 FT /note="INTERNAL EXON; p-value: 0.215." FT exon 1881..2039 FT /number=12 FT /note="INTERNAL EXON; p-value: 0.266." FT exon 2040..2076 FT /number=13 FT /note="INTERNAL EXON; p-value: 0.006." FT exon 2077..2207 FT /number=14 FT /note="INTERNAL EXON; p-value: 0.385." FT exon 2208..2307 FT /number=15 FT /note="INTERNAL EXON; p-value: 0.503." FT exon 2308..2574 FT /number=16 FT /note="LAST EXON; p-value: 0.957." FT CONTIG join(NC_006583:8180689...8180768, 8182932...8183093, FT 8183387...8183637, 8184206...8184410, 8189623...8189745, FT 8190714...8190821, 8193121...8193318, 8197257...8197499, FT 8198053...8198262, 8204219...8204361, 8211284...8211440, FT 8213454...8213612, 8220984...8221020, 8230118...8230248, FT 8230464...8230563, 8232910...8233176) XX SQ Sequence 2574 BP; 636 A; 653 C; 674 G; 611 T; other; atggaattca gaaaaggaat ttgcttggcc agagctgata atcggataaa cttagaatac 60 gaagcacctg ctaccaacag accccagctc aaacccgacg cggtcttcaa gcgagctctg 120 ttaagcacga agtgtggcgg aaacaacggc ttccctgacg acctgcacag cttctccgca 180 caccgcgcag ctcgtaagaa agtacaaatc atgatcacag aaaaccgctc cgctttacaa 240 agagctaccg cagcgggaaa ggcaccggga ctacaactcc cacagtgcaa ggcggccaga 300 cagcgcgtgg cctttccgcc accttccaga gttccttgcg catgcgctcc acctatttgg 360 cgccagggtg ggcggggcga tcgctcaacg ggcggcaatc aaattagcga ttacgaactg 420 ggtgttcttg cagcccttcg agaggactgt aaactgcgaa attctcagtc tgactatggc 480 tctgctgttg ctttgcagga gaggtccaga gaaccgcggg aggacgtccc ctcaacttgg 540 aaacatgcgg agaccccacg tcctgataca agtagcctag ctccccccca cccggggaac 600 aggcttcctc cttcccttca ttcagttgta ggcgctgtgg ggagctggga gccctggagc 660 agcgcctcct gcgggatgcg ctccacctgc gagggcaggg gcaggccgtg cttgggtgct 720 aaactcttgg tgaacaaagt acatcctcag agcaatgaca tactggtgaa ctggatgtat 780 ggaatggata ctctagattt tagtcacatg ctgggtggga ggaagagacc gggcaccagt 840 tacgcaggca ctgccaccct gaagcagtgc gctaggcgag gaaggcacta caagcagccc 900 tctgctgacc atcctgcatc tctggaaagg aagggtgctg ctcaccttcg gtctggagat 960 gaacagccgg tggttttctg gttaacttgt agttcaaatg ctcgattctt cccctctctc 1020 agtatgcctt cagaaatctt gctgaagatc ttttcctacc tggatgctgt gaccctgctg 1080 tgtactggat gtgtgaatag gcgcttttac cacctggcca atgacaattt tatttggatc 1140 agaatctatt caactgcctt ttcacctaaa atatctaatt ggcaagttaa ttcagcagag 1200 aagaccactg tatctatgaa cttactgtcg gttgaggata aagaagctgg atattggaag 1260 aaagaatata ttgcaaagca aagagcatct gtaaaagcag cgctagcgcg ggttctcaaa 1320 cctgtcaacc cttacacagg ccttccagtt aaaaccaaag aggccctcag aatatctggt 1380 ttaggttggg tgattatatt gaaagaaaaa aatggaaaag aatacatcat gcagcacatt 1440 gaccttttga taaatgattc atcagtgaca attatatggt atggcagaaa ctggccacag 1500 ctagccacat tgtcaaccct agatttgtgt ggtgtgacgc cagtttttag ggaccggtct 1560 aaacccccct ccaaaaatgg cccctacgag ctacctcctc atactcctct tttggatgac 1620 aacccggagt atggactaca tggctaccag ctgcatgttg atatgcacag cggtggagtt 1680 ttctacctgt gtggtacatt tcgcaatctc tttaccaaga aagaagggat cgggccaaag 1740 ctctctcagt gggagatacc taggatgagc agtatgtcgg cagcccacaa gcaaggcccc 1800 tgcatttggc agggctgtct tcctcatcca ctcgaggcca tacctcatgc tccttggctt 1860 tggatcccaa cactggtctg gacccacctc gctgccgccc ctcaccggca cgtggctgtg 1920 gacactgtca gtgtccttgc ttgcaaagtg tggccacgtc aaagcctgcc ttccaaggtg 1980 tctgagggcc agggtggtaa tagaggcacc tccaggaggc ttggcccgtg ctgctgccca 2040 gtgatgacac gctgtcttga ttgctgtacc tctacggaaa gatgccctag caggtttgct 2100 ggtggtgctg cagtgacctg ggtgattcca ggagtaagca ccttgggagg agcccaacgc 2160 cccactcctt gcccttggat tttgcagagt tcattggtca gtgaggggat ggaagtgatt 2220 tcttatggag aagggaccag atggagaagg agctgccttg tgcagacaca actctctctg 2280 gcagctgagg ggctgaatgc agccagaagt tgttctataa tggacataac tcttttggac 2340 gaatatggga aacccttttg gtgtctcagt tcccctgttt gcatgagatc ttctgtgccc 2400 tctgatggcc ctaacttctt gggacagact tactgtgttg actatgtgga ctcggaaggc 2460 aaagtgcacg tggagctggt gtggatcaaa gagacagaag aatacttcat cgtgagcctg 2520 gtcctttacc tgaagatagc aaaaataaac cactggtttg ggacagcata ctaa 2574 // ID NC006583_199; SV 1; special; RNA; MAM; 1092 BP. XX AC NC006583_199; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_199; NC006583_199. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..1092 FT /organism="Canis familiaris" FT CDS 1..1092 FT /protein_id="NC006583_199" FT /db_xref="trGEN:NC006583_199" FT /translation="MNRNLTEEDIDLANKHMRKWSLAIREIQIKTTVRSHLTP FT VRMGKINKAGNHKCWRGCGEKGTLIHCWWECELVQPLWKTVWRFLKELKIDLP FT YDPAIALLGIYPKDTDAVKRWDTCTPMFIAAMATIAKLWKEPRCPSKDEWIKK FT IEREKEQELTTVQERGPNRGPWLPDESQEALKNEHRFGIGGHRDAQLPQAERL FT QEDLLLRKRRRVVVAPLRCSLASHLADPIPAALWALPQGHPWTALTAVSGLEY FT PVGTDSPVDGQHDGEAVLDHSAPVKSGSDSRALITGIQDSAVHHWLLAHGRDY FT SLLSINSKATQSSSLKIKEGALTIQCHYAPARAAPGPDPRPPGTAQIIPICQS FT TGVFKT" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '-' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..439 FT /number=1 FT /note="FIRST EXON; p-value: 0.533." FT exon 440..709 FT /number=2 FT /note="INTERNAL EXON; p-value: 0.424." FT exon 710..823 FT /number=3 FT /note="INTERNAL EXON; p-value: 0.137." FT exon 824..968 FT /number=4 FT /note="INTERNAL EXON; p-value: 0.009." FT exon 969..1092 FT /number=5 FT /note="LAST EXON; p-value: 0.047." FT CONTIG join(NC_006583:8266549...8266111, 8265120...8264851, FT 8259686...8259573, 8255358...8255214, 8236602...8236479) XX SQ Sequence 1092 BP; 319 A; 282 C; 291 G; 200 T; other; atgaacagaa atctcacaga ggaagacata gacttggcca acaagcacat gagaaaatgg 60 tcacttgcca tcagggaaat acagatcaaa accacagtga gatcccacct cacaccagtg 120 agaatgggga aaattaacaa ggcaggaaac cacaaatgtt ggagaggatg cggagaaaag 180 ggaaccctca tacactgttg gtgggaatgt gaactggtgc agccactctg gaaaactgtg 240 tggaggttcc tcaaagagtt aaaaatagac ctgccctacg acccagcaat tgcactgttg 300 gggatttacc ccaaagatac agatgcagtg aaacgctggg acacctgcac cccgatgttt 360 atagcagcaa tggccacgat agccaaactg tggaaggagc ctcggtgtcc gtcgaaagat 420 gaatggataa agaagattga aagggagaaa gagcaggagc tcaccacggt gcaggagagg 480 gggcctaaca gagggccttg gctcccagat gagtcccaag aggccttaaa gaatgagcat 540 aggtttggga tcgggggaca ccgggatgca cagctgcctc aagcagagag gttgcaggaa 600 gacctgctcc tgaggaagag gagacgagtg gtcgtggccc ctctgcgatg ctccctggcc 660 agccaccttg cagaccccat accagccgcg ctctgggctc tcccccaagg acacccatgg 720 acagccctaa cagcagtgtc agggctcgaa tatcctgttg gaacagatag ccccgtggat 780 ggtcagcatg atggtgaggc tgtcttagat cactcagccc cagtcaaatc tggaagtgac 840 agcagagctc tgattacagg aattcaagac tcagctgtgc atcactggct ccttgctcat 900 ggcagagact actccttgct ttccatcaat tcgaaagcta cacagagcag ttctcttaaa 960 atcaaggaag gggctctcac catccagtgc cactatgcac ctgcccgagc ggcccccggt 1020 ccagacccca gaccaccagg gacagctcag attattccaa tttgccaatc cacaggagtt 1080 ttcaaaacct ag 1092 // ID NC006583_200; SV 1; special; RNA; MAM; 255 BP. XX AC NC006583_200; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_200; NC006583_200. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..255 FT /organism="Canis familiaris" FT CDS 1..255 FT /protein_id="NC006583_200" FT /db_xref="trGEN:NC006583_200" FT /translation="MAVVVVVVVVVVVAVGAVVVVVVVVVVVAVAVGVKVIVA FT QPDTLQLVPVREHHGSLGRSADLNKEQLMMESGHARIPLQLRNIM" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '-' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..120 FT /number=1 FT /note="FIRST EXON; p-value: 0.484." FT exon 121..255 FT /number=2 FT /note="LAST EXON; p-value: 0.548." FT CONTIG join(NC_006583:8272761...8272642, FT 8270935...8270801) XX SQ Sequence 255 BP; 56 A; 35 C; 98 G; 66 T; other; atggccgtgg tggtggtggt ggtggtggtg gtggtggtgg ctgtgggggc agtggtggtg 60 gtggtggtgg tggtggtggt agtagcagtg gcagtaggag taaaagtaat agtagcacag 120 cctgacactt tgcagttagt acctgtacga gaacaccatg gttctctggg ccggtctgca 180 gacctgaata aagagcagtt aatgatggag agtggacatg caaggattcc tctccagttg 240 agaaatatta tgtga 255 // ID NC006583_201; SV 1; special; RNA; MAM; 3810 BP. XX AC NC006583_201; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_201; NC006583_201. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..3810 FT /organism="Canis familiaris" FT CDS 1..3810 FT /protein_id="NC006583_201" FT /db_xref="trGEN:NC006583_201" FT /translation="MTRRETSHQKNQKQSSLPQSYKIWITIQCQKANSEALLY FT SYWWLYKKSIKDSRDFMTAEFRSNQAEIKNQLNEMQSKLEVLTTRVNEVEERV FT SDVENKLMAKRETEEKRDKQLKDHEDRLREINDSLRKKNLRLIGVPEGAERDR FT GPEYVFEQILAENFPNLGRETGIKIQEIERSPPKINKNRSTPRHLIVKLANSK FT DKEKILKAARDKKSLTFMGRNIRTHFRQKDTYGLKIKGWRTIYHSNGPQKKAG FT VAILISDKLKFTPKTVVRDEEGHYLILKGTIQQEDLTILNIYAPNVGAAKYIN FT QLITKVKKSLDNNTLILGDFNLALSTLDRSSKHNISKETRALNDTLDQMDFTD FT IYRTLHPNSTEYTFFSSAHGTFSRIDHILGHKSGLNRYQKIGIIPCIFSDHNA FT LKLELNHNKKFGRTSNTWRLRTILLKDERVNQEIKEELKRFMETNENEDTTVQ FT NLWDAAKAVLRGKYIAIQASIQKLERTQIQKLTLHIKELEKKQQMDPTPSRRE FT LIKIRAELNEIETRRTVEQINRTRSWFFERINKIDKPLASLIKKKREKTQINK FT IMNEKGEITTNTKEIQTILKTYYEQLYANKLGNLEEMDAFLESHKLPKLEQEE FT IENLNRPITREEIEAVIKNLPRHKSPGPDGFPGEFYQTFKEEIIPILLKLFGK FT IERDGVLPNSFYEASITLIPKPDKDPTKKENYRPISLMNMDAKILNKILANRI FT QQHIKKIIRHDQVVFIPGTQGWFNIRKTINVIHHISKRKTKNHMILSLDAEKA FT FDKIQHPLLIKTLQSVGIEGTFLDILKAIYEKPTANIILNGEALGAFPLRSGT FT RQGCPLSPLLFNIVLEVLASAIRQQKDIKGIQIGKEEVKLSLFADDMILYIEN FT PKASTPRLLELIQQFGSMAGYKINAQKSMAFLYTNNETEEREIKEAIPFTIVP FT KSIRYLGINLTKEINSKWMKDLNVRQDSIKILEKNTGNTLFELGHSNFLQDTS FT TKAKETKAKMNYWDFIKIRSFCTAKDTVNKTKRQPTEWEKIFANDISDKGLVS FT KIYKELLKLNTKETNNPIMKWTKDMKRNLTEEDIDMANTHMRKWSLAIREIQF FT KTTRRYHLTPRFLKELKIDLPYDPAIALLGIYPKDSDAMKCQDTCTPMFIAAM FT STIAKLWKEPRCPSKDEWIKKMWFMYTMEYYSAIRNDKYPPFASTWMELEDLL FT LPQADVFSSALFPPAPRCRPHHSTGQLQEPGQLPSDSPTSVWADAILCDRGQR FT LLPLGAPHSDP" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '-' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..663 FT /number=1 FT /note="FIRST EXON; p-value: 0.265." FT exon 664..2859 FT /number=2 FT /note="INTERNAL EXON; p-value: 0.123." FT exon 2860..3327 FT /number=3 FT /note="INTERNAL EXON; p-value: 0.308." FT exon 3328..3607 FT /number=4 FT /note="INTERNAL EXON; p-value: 0.216." FT exon 3608..3712 FT /number=5 FT /note="INTERNAL EXON; p-value: 0.009." FT exon 3713..3810 FT /number=6 FT /note="LAST EXON; p-value: 0.107." FT CONTIG join(NC_006583:8301088...8300426, 8300013...8297818, FT 8297085...8296618, 8296491...8296212, 8279614...8279510, FT 8273860...8273763) XX SQ Sequence 3810 BP; 1486 A; 823 C; 719 G; 782 T; other; atgactagaa gggaaacctc acatcaaaag aatcagaaac agtcctctct cccacagagt 60 tacaaaatct ggattacaat tcaatgtcag aaagccaatt cagaagcact attgtacagc 120 tactggtggc tctataaaaa aagcataaag gactcaagag acttcatgac tgcagaattt 180 agatccaatc aggcagaaat taaaaatcaa ttgaatgaga tgcaatccaa actagaagtc 240 ctaacgacga gggttaacga ggtggaagaa cgagtgagtg acgtagaaaa caagttgatg 300 gcaaagaggg aaactgagga aaaaagagac aaacaattaa aagaccatga agacagatta 360 agagaaataa acgacagcct gaggaagaaa aacctacgtt taattggggt tcccgagggt 420 gccgaaaggg acagagggcc agaatatgta tttgaacaaa ttctagctga aaactttcct 480 aatctgggaa gggaaacagg cattaagatc caggaaatag agagatcccc ccctaaaatc 540 aataaaaacc gttcaacacc tcgacattta atagtgaagc ttgcaaattc caaagataaa 600 gagaagatcc ttaaagcagc aagagacaag aaatccctga cttttatggg gaggaatatt 660 aggactcatt ttagacagaa ggacacctac ggcctgaaaa taaaaggttg gagaaccatt 720 taccattcaa atggtcctca aaagaaagca ggggtagcca tccttatatc agataaacta 780 aaatttaccc caaagactgt agtgagagat gaagagggac actatctcat acttaaagga 840 actatccaac aagaggactt aacaatcctc aatatatatg ccccgaatgt gggagctgcc 900 aaatatataa atcaattaat aaccaaagtg aaaaaatcct tagataataa tacacttata 960 cttggtgact tcaatctagc tctttctacc ctcgataggt cttctaagca caacatctcc 1020 aaagaaacga gagctttaaa tgatacactg gaccagatgg atttcacaga tatctacaga 1080 actttacatc caaactcaac tgaatacaca ttcttctcaa gtgcccatgg aactttctcc 1140 agaatagacc acatactggg tcacaaatcg ggtctgaacc gataccaaaa gattgggatc 1200 atcccctgca tattctcaga ccataatgcc ttgaaattag aactaaatca caacaagaag 1260 tttggaagga cctcaaacac gtggaggtta aggaccatcc tgctaaaaga tgaaagggtc 1320 aaccaagaaa ttaaggaaga attaaaaaga ttcatggaaa ctaatgagaa tgaagataca 1380 accgttcaaa atctttggga tgcagcaaaa gcagtcctaa gggggaaata catcgcaata 1440 caagcatcca ttcaaaaact ggaaagaact caaatacaaa agctaacctt acacataaag 1500 gagctagaga aaaaacagca gatggaccct acacccagca gaagagagtt aattaaaatt 1560 cgagcagaac tcaacgaaat cgagaccaga agaactgtgg aacagatcaa cagaaccagg 1620 agttggttct ttgaaagaat taataagata gataaaccat tagccagcct tattaaaaag 1680 aagagagaga agactcaaat taataaaatc atgaatgaga aaggagagat cactaccaac 1740 accaaggaaa tacaaacgat tttaaaaaca tattatgaac agctatacgc caataaatta 1800 ggcaatctag aagaaatgga cgcattcctg gaaagccaca aactaccaaa actggaacag 1860 gaagaaatag aaaacctaaa caggccaata accagggagg aaattgaagc agtcatcaaa 1920 aacctcccaa gacacaagag tccagggcca gatggcttcc caggggaatt ctatcaaacg 1980 tttaaagaag aaatcatacc tattctccta aagctgtttg gaaagataga aagagatgga 2040 gtacttccaa attcattcta tgaggccagc atcaccttaa ttccaaaacc agacaaagac 2100 cccaccaaaa aggagaatta cagaccaata tccctgatga acatggatgc aaaaattctc 2160 aacaagatac tagccaatag gatccaacag cacattaaga aaattattcg ccatgaccaa 2220 gtagtattta tccccgggac acaaggctgg ttcaacattc gtaaaacaat caatgtgatt 2280 catcatatca gcaagagaaa aaccaagaac catatgatcc tctcattaga tgcagagaaa 2340 gcatttgaca aaatacagca tccactcctg atcaaaactc ttcagagtgt agggatagag 2400 ggaactttcc tcgacatctt aaaagccatc tacgaaaagc ccacagcaaa tatcattctc 2460 aatggggaag cactgggagc ctttccccta agatcaggaa caagacaggg atgtccactc 2520 tcaccactgc tattcaacat agtactggaa gtcctagcct cagcaatcag acaacaaaaa 2580 gacattaaag gcattcaaat tggcaaagaa gaagtcaaac tctccctctt cgccgatgac 2640 atgatactct acatagaaaa cccaaaagcc tccaccccaa gattgctaga actcatacag 2700 caatttggta gcatggcagg atacaaaatc aatgcccaga aatcaatggc atttctatac 2760 actaacaatg agactgaaga aagagaaatt aaggaggcaa tcccatttac aattgtaccc 2820 aaaagcataa gatacctagg aataaaccta accaaagaga taaactcaaa atggatgaaa 2880 gatctaaatg tgagacaaga ttccatcaaa atcctagaga agaacacagg caacaccctt 2940 tttgaactcg gccacagtaa cttcttgcaa gatacctcca cgaaggcaaa agaaacaaaa 3000 gcaaaaatga actattggga cttcatcaag ataagaagct tttgcacagc aaaggataca 3060 gtcaacaaaa ctaaaagaca acctacagaa tgggagaaga tatttgcaaa tgacatatca 3120 gataaagggc tagtttccaa gatctataaa gaacttctta aactcaacac caaagaaaca 3180 aacaatccaa tcatgaaatg gacaaaagac atgaagagaa atctcacaga ggaagacata 3240 gacatggcca acacacacat gagaaaatgg tcacttgcca tcagggaaat acaattcaaa 3300 accacaagga gataccacct cacaccaagg ttcctcaaag agttaaaaat agacctgccc 3360 tatgacccag caattgcact gttggggatt taccccaaag attcagatgc aatgaaatgc 3420 caggacacct gcaccccgat gtttatagca gcaatgtcca caatagccaa actgtggaag 3480 gagcctcggt gtccatcaaa agatgaatgg ataaagaaga tgtggtttat gtatacaatg 3540 gaatattact cagccattag aaacgacaaa tacccaccat ttgcttcgac gtggatggaa 3600 ctggaagatt tgctcctccc gcaagctgac gtcttttcct ctgcgctctt tccacctgct 3660 ccacgctgcc gtcctcatca ctctactgga cagctgcaag agcctggtca acttccttct 3720 gactccccga catctgtgtg ggccgatgcc atcctctgcg accgggggca gaggctgctg 3780 cctctggggg ctccccactc ggatccctga 3810 // ID NC006583_202; SV 1; special; RNA; MAM; 552 BP. XX AC NC006583_202; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_202; NC006583_202. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..552 FT /organism="Canis familiaris" FT CDS 1..552 FT /protein_id="NC006583_202" FT /db_xref="trGEN:NC006583_202" FT /translation="MKITVKPLLTYYNGTNKRPNQRRCDSFLFHFPSWKGNCP FT RVKWVSTDLSDVIAEGTPNKDPGSFEHLGLRGIRGEKRLMASVEGPSKDTLKG FT ETWARNADVHMGLAGLGGESLTGGGNLQSQQEVISSIGRTETRNSKEKNEHFV FT AVRLNWTWCSSLSDEWSCHDRQTLDITDGPLDGQETQV" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '+' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..228 FT /number=1 FT /note="FIRST EXON; p-value: 0.969." FT exon 229..343 FT /number=2 FT /note="INTERNAL EXON; p-value: 0.493." FT exon 344..552 FT /number=3 FT /note="LAST EXON; p-value: 0.762." FT CONTIG join(NC_006583:8321247...8321474, 8321565...8321679, FT 8325299...8325507) XX SQ Sequence 552 BP; 171 A; 112 C; 151 G; 118 T; other; atgaaaataa cagtcaagcc tttactcact tactacaatg gcacaaacaa gaggccaaac 60 cagagacggt gtgactcatt cctgttccat ttcccatcat ggaagggcaa ctgcccaagg 120 gtcaagtggg tcagcacaga tctatcagat gtcattgctg agggaacccc aaacaaagac 180 cctggcagtt ttgagcactt ggggctaaga ggaatcagag gggaaaagag attgatggct 240 tctgttgaag gccccagtaa agatactctg aaaggagaga cctgggctag gaatgcagat 300 gtgcacatgg gcttggctgg ccttgggggt gagtccttga caggtggagg taaccttcaa 360 agtcagcaag aggtgatctc ctcgattgga agaactgaaa caagaaactc caaggagaaa 420 aatgaacatt ttgtagctgt tagactaaac tggacgtggt gcagctcgtt aagtgatgag 480 tggagctgcc atgatcggca gaccttagac attacagatg gacctttaga tggacaagaa 540 acccaagtct ga 552 // ID NC006583_203; SV 1; special; RNA; MAM; 519 BP. XX AC NC006583_203; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_203; NC006583_203. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..519 FT /organism="Canis familiaris" FT CDS 1..519 FT /protein_id="NC006583_203" FT /db_xref="trGEN:NC006583_203" FT /translation="MAGAGGGRTRPREGLQREIPARPAESLRERGVTGKACTT FT EEEFRKRERGEGQEDTPTLTLTLTLTLTLYGRLVQSTGRAALPGKLAGDPATC FT LRGCDSPRCAQTRWRNGRLKDHVVSKDRDGKGDTQILLPLKSAPRIHRQEGAG FT RVKHGAPPPSVLGGASRCLEASRSTWG" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '-' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..519 FT /number=1 FT /note="SINGLE EXON; p-value: 0.840." FT CONTIG join(NC_006583:8329051...8328533 FT join(NC_006583:8329051...8328533) XX SQ Sequence 519 BP; 128 A; 139 C; 176 G; 76 T; other; atggcgggtg cgggaggggg caggactcga cccagagagg gcctgcagcg tgagatacct 60 gcccgcccag ctgagagcct gagagagcgg ggagtcacag gcaaagcttg taccacagaa 120 gaggaattta gaaaacgtga aagaggggag gggcaggaag acacccccac actcacactc 180 acactcacac tcacactcac actgtacggg aggctagtcc agtccacggg ccgggcggcg 240 ctgccaggca agctagcagg agatcctgct acgtgtctca ggggctgcga ttcgcctaga 300 tgtgctcaga ccagatggag gaatgggagg ttaaaggacc acgtagtgag caaggacagg 360 gacgggaaag gtgacacaca aattctcctc ccactgaagt ctgctcccag gatccacagg 420 caggaaggcg cgggtcgtgt gaagcatggt gcacccccac ccagtgtgct tggaggtgcc 480 tcccggtgct tggaggcatc tcgaagcacg tggggctga 519 // ID NC006583_204; SV 1; special; RNA; MAM; 687 BP. XX AC NC006583_204; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_204; NC006583_204. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..687 FT /organism="Canis familiaris" FT CDS 1..687 FT /protein_id="NC006583_204" FT /db_xref="trGEN:NC006583_204" FT /translation="MCGKSGQAPIGTSDWESSPLGPLMSLQRSVTTVKAGPQS FT TGPPTSLDLQKHTASPGREGPCSRTELLAFWPDQQLWRLEAKVQVTVDLVSGA FT DLPPGSRRATFLLCPHVAEEQGSSLRSLCKTSTPFLRALPSGPDHLPKAPFPR FT PITLGIWLQHMNLGARKLSGHSLQVDHPYLNLQNNLFIGTDIISNIFKNIFYL FT REAFKYFLPYWDTGKLVTICAEVHSRRGTW" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '-' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..222 FT /number=1 FT /note="FIRST EXON; p-value: 0.307." FT exon 223..687 FT /number=2 FT /note="LAST EXON; p-value: 0.398." FT CONTIG join(NC_006583:8333163...8332942, FT 8332339...8331875) XX SQ Sequence 687 BP; 165 A; 184 C; 165 G; 173 T; other; atgtgtggta aaagtggcca agctccaata ggtacctctg actgggaaag ctcgccgctg 60 ggccccctca tgtcccttca gcgttcagtg accaccgtga aagccgggcc ccagagcact 120 gggcctccca cctccttgga cctgcagaaa cacacggcat caccagggag ggaaggccct 180 tgttccagaa cagagttatt ggctttttgg ccagaccaac agctctggag gctagaggcc 240 aaggtccagg tgacagttga tttggtgtct ggtgcagacc tgcctcctgg ttcacggaga 300 gccaccttct tgctgtgtcc ccatgtggca gaggaacaag ggagctctct gaggtccctc 360 tgtaagacat caaccccatt cctgagggct ctaccctcag gacctgatca tctcccaaag 420 gccccatttc caagacccat cacactgggg atttggcttc aacatatgaa tttgggagca 480 cgcaaacttt caggccatag tttacaggtc gatcatcctt atttgaacct tcaaaataat 540 ctgtttatcg gcacagatat aatctccaat atatttaaaa atatttttta tttacgcgag 600 gcttttaaat attttcttcc ttattgggac accgggaagc tagtcactat ttgtgcagaa 660 gtgcattccc ggaggggcac ctggtag 687 // ID NC006583_205; SV 1; special; RNA; MAM; 807 BP. XX AC NC006583_205; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_205; NC006583_205. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..807 FT /organism="Canis familiaris" FT CDS 1..807 FT /protein_id="NC006583_205" FT /db_xref="trGEN:NC006583_205" FT /translation="MAVNVYSTSVTSDNLSRHDMLAWINESLQLNLTKIEQLC FT SGAAYCQFMDMLFPGSIALKKVKFQAKLEHEYIQNFEILQAGFKRMGVDKIIP FT VDKLVKGKFQDNFEFVQWFKKFFDANYDGKDYDPVAARQGQETAVAPSLVVPA FT LNKPKKPLSSSSAAPQRPIATHRTTATPKAGPGVVRKNPGVGNGDDEAAELMQ FT QVNVLKLTVEDLEKERDFYFGKLRNIELICQENEGENNPVLQRIVDILYATDE FT GFVIPDEGGPQEEQEEY" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '+' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..807 FT /number=1 FT /note="SINGLE EXON; p-value: 0.873." FT CONTIG join(NC_006583:8351151...8351957 FT join(NC_006583:8351151...8351957) XX SQ Sequence 807 BP; 252 A; 160 C; 202 G; 193 T; other; atggcagtga acgtatactc aacgtccgtc accagtgata acctaagtcg acatgatatg 60 ctggcctgga tcaatgagtc tctgcagctg aatctgacaa agattgaaca gttgtgctca 120 ggggctgcct attgtcagtt tatggacatg ctattccctg gctccattgc cttgaagaaa 180 gtgaaattcc aggctaaact agagcatgaa tacatccaga acttcgaaat actacaagca 240 ggttttaaga gaatgggtgt tgacaaaata attcctgtgg acaaattagt aaaaggaaag 300 tttcaggaca attttgaatt tgttcagtgg ttcaagaagt tttttgatgc aaactatgat 360 ggaaaagact atgaccctgt agctgccaga caaggtcaag aaactgcagt ggctccctcc 420 cttgttgttc cagctctgaa caaaccgaag aaacctctta gctctagcag tgcagctcca 480 cagaggccca ttgcaacaca cagaactact gcaaccccta aggctggccc gggtgtggtg 540 cgaaagaatc ctggtgtggg caacggggat gatgaagcag ctgaattgat gcagcaggtc 600 aatgtattga aacttaccgt cgaagacttg gagaaagaga gagatttcta ctttggaaag 660 ctaagaaaca ttgaattgat ttgccaggag aacgaagggg aaaacaaccc tgtattgcag 720 aggatcgtgg acattctcta tgccacagat gaaggctttg tgatacctga tgaagggggc 780 ccacaggagg aacaagaaga gtattaa 807 // ID NC006583_206; SV 1; special; RNA; MAM; 873 BP. XX AC NC006583_206; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_206; NC006583_206. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..873 FT /organism="Canis familiaris" FT CDS 1..873 FT /protein_id="NC006583_206" FT /db_xref="trGEN:NC006583_206" FT /translation="MPLSNRIAGYHYPVQKQVPEAISQEVATEGPLNSLRAPS FT ALQLWIVVWILHQVFMSLSGTPPAPLQNLTTSSLSIHLAMDTEAPSTVWLLWT FT LLNYWDFIKIRSFCTAKDTVNKTQRQPTEWEKIFSNVVSDKGLVSKIYKELIK FT LNSKETNNPIMKWAKDMNRDLTEEDIDMANKHIRKCSTSLAIREIQIQTTMRY FT HLTPDIQQKPEQNNVVPELNRASTDSVSVGGGVVRPVIHPLGNQAASLAVLLQ FT RKKTYIPSSMAVSKPSNGAASEPSEVGPDAFPSQETCTS" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '-' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..68 FT /number=1 FT /note="FIRST EXON; p-value: 0.771." FT exon 69..204 FT /number=2 FT /note="INTERNAL EXON; p-value: 0.927." FT exon 205..606 FT /number=3 FT /note="INTERNAL EXON; p-value: 0.091." FT exon 607..702 FT /number=4 FT /note="INTERNAL EXON; p-value: 0.004." FT exon 703..858 FT /number=5 FT /note="INTERNAL EXON; p-value: 0.107." FT exon 859..873 FT /number=6 FT /note="LAST EXON; p-value: 0.034." FT CONTIG join(NC_006583:8374911...8374844, 8372624...8372489, FT 8371471...8371070, 8363667...8363572, 8359795...8359640, FT 8354713...8354699) XX SQ Sequence 873 BP; 280 A; 224 C; 175 G; 194 T; other; atgcccttgt ccaataggat tgctggttat cactatccag tgcagaaaca agtccccgaa 60 gccatcagcc aggaagtagc aactgagggt cccctgaatt cccttcgagc tccatcagcc 120 ttacaactgt ggatcgttgt ctggatcctt caccaagttt ttatgtcact ttcaggaact 180 ccaccagctc cccttcaaaa cctgaccaca tcttctttat ccattcatct tgcgatggac 240 accgaggctc cttccacagt ttggctattg tggacattgc tgaactattg ggacttcatc 300 aagataagaa gcttttgcac agcaaaagat acagtcaaca aaactcaaag acaacctaca 360 gaatgggaga agatattttc aaatgtcgta tcagataaag ggctagtttc caagatctat 420 aaagaactta ttaaactcaa cagcaaagaa acaaacaatc caatcatgaa atgggcaaaa 480 gacatgaaca gagatctcac agaggaagac atagacatgg ccaacaagca cattagaaaa 540 tgctccacat cactggccat cagggaaata caaatccaaa ccacaatgag ataccacctc 600 acaccagaca ttcagcagaa accagagcag aacaacgtgg tccctgaact taacagagca 660 tcaacagatt cagtcagtgt aggaggaggt gtggtcaggc cagtcatcca ccctcttggg 720 aatcaggctg cctccttggc ggttctttta caaaggaaga agacctatat tccttcctcg 780 atggctgtat caaaaccgag caatggagct gccagcgaac cctctgaagt tggccctgat 840 gcatttccga gccaggagac ctgcacaagc tag 873 // ID NC006583_207; SV 1; special; RNA; MAM; 1287 BP. XX AC NC006583_207; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_207; NC006583_207. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..1287 FT /organism="Canis familiaris" FT CDS 1..1287 FT /protein_id="NC006583_207" FT /db_xref="trGEN:NC006583_207" FT /translation="MEKQAPRSPQNGDRPRQHLTSSLIFQDQTVFWKRWTPRA FT AIQTLLEEMEGTIGKSNRNRKPPVVNGGQPGRALTQQQGPSDRWDADVECPGQ FT NQHDRGTRKVSQGSEVGANRAPGIPVVDSLDVHCLGGTRIEVVPTEYLSHARD FT QCMTSPLNVSALPDDSPRAVSELLELAVTGGTLTLTTPRPLRKPSPLGLIQRL FT HETFMSGQMGWQKCGSHSGKTLLIHHPIKLAVISRGRDTKGQRGAMIRVRSHR FT ARAGNVHNSHTVEGAMMPFNRRMDKEDVVYIHSGILLSHRRGRILTIYMDVNG FT TGGPLPYPIVSPLTLVIPQPMSKSGVSSDLVNGGLSFIQWKVTKGVEAMVPGV FT CLLEALLWWQRGEWHERGHTGSQGISAASVRDVSSLSSGAGHVDLSDTQESGW FT KIYNQLDVGMAREVEGPE" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '+' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..23 FT /number=1 FT /note="FIRST EXON; p-value: 0.063." FT exon 24..162 FT /number=2 FT /note="INTERNAL EXON; p-value: 0.414." FT exon 163..343 FT /number=3 FT /note="INTERNAL EXON; p-value: 0.320." FT exon 344..449 FT /number=4 FT /note="INTERNAL EXON; p-value: 0.631." FT exon 450..593 FT /number=5 FT /note="INTERNAL EXON; p-value: 0.429." FT exon 594..764 FT /number=6 FT /note="INTERNAL EXON; p-value: 0.353." FT exon 765..920 FT /number=7 FT /note="INTERNAL EXON; p-value: 0.028." FT exon 921..1068 FT /number=8 FT /note="INTERNAL EXON; p-value: 0.561." FT exon 1069..1287 FT /number=9 FT /note="LAST EXON; p-value: 0.201." FT CONTIG join(NC_006583:8378818...8378840, 8380916...8381054, FT 8385186...8385366, 8387385...8387490, 8387721...8387864, FT 8388632...8388802, 8395495...8395650, 8400090...8400237, FT 8404416...8404634) XX SQ Sequence 1287 BP; 360 A; 295 C; 372 G; 260 T; other; atggagaagc aggctccccg cagtcctcag aacggggaca gaccacgaca gcacctgaca 60 tcaagcttga ttttccagga tcaaactgta ttctggaaaa gatggacacc aagagctgcc 120 attcaaacac tcctagaaga aatggaagga accataggaa aaagcaatcg aaatagaaaa 180 cctccagtgg ttaatggtgg ccagcctggc agggccctga ctcagcagca gggtccatca 240 gaccggtggg atgcagacgt ggaatgtcca ggtcagaacc agcacgacag agggacacgc 300 aaggtgagcc agggaagtga ggtgggagca aatagagccc caggaattcc tgtggttgat 360 tccctagatg tgcattgcct tggtggtacc aggatagaag tggttccaac agaatatctg 420 tcacatgccc gtgatcagtg catgacaagt ccgttaaacg tcagtgcatt gccagatgac 480 agtcccaggg ctgtgagtga gctgttagag ctagcggtga cgggagggac cctcaccctg 540 accacacctc gaccactgcg aaagccaagc cccttggggc tgattcagag gcttcacgag 600 acctttatgt ctggacaaat ggggtggcag aaatgtggct cccactcggg gaagaccctg 660 ttaatccatc accccataaa gctggctgtc atatcccgag gtcgcgacac caaggggcaa 720 agaggagcca tgatcagagt tcggtctcac agagccagag caggcaatgt ccacaacagc 780 cacactgtgg aaggagccat gatgcccttc aacagacgaa tggataaaga agatgtggtc 840 tatatacaca gtggaatatt actcagccat cggagaggac gaatcctcac catttacatg 900 gacgtgaatg gaactggagg tcctcttcct taccctattg tttcaccact aactcttgtc 960 atccctcaac caatgagtaa gtcaggggta tcaagtgacc ttgtgaatgg gggactgtcc 1020 tttatccagt ggaaggttac taagggagta gaagccatgg tccctggggt ttgcctttta 1080 gaagcattac tttggtggca gagaggagaa tggcatgaaa ggggtcatac tggaagccag 1140 gggatcagtg cagcctcggt gagagatgtc agcagcctaa gctcaggtgc tggccacgtg 1200 gatttaagtg atactcagga gagtgggtgg aagatctata atcagttgga tgtaggcatg 1260 gcaagggaag tagagggtcc agagtga 1287 // ID NC006583_208; SV 1; special; RNA; MAM; 879 BP. XX AC NC006583_208; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_208; NC006583_208. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..879 FT /organism="Canis familiaris" FT CDS 1..879 FT /protein_id="NC006583_208" FT /db_xref="trGEN:NC006583_208" FT /translation="MWKVHQDCSEKRKAYPPAQTSFVSCDPIGVNPYTVGFAP FT ESRCEPLTLPGLHLCPTPRLREAMEQKDLFQGVSLRELESYFPGPIRLLSRGE FT VAAVILHRGQGGAEGKAGTQAHTWRRGRAWASEHREAKPSSAPQDWQARVSPD FT RGSSQGAPPQNYFKQAAGMGPKIATRRMDQKVIAEKTPVFSDWGLQSTQDPIH FT GFYHLSDIRSQVTGRLLPWHNSRALRWPDKDTDTQNVKLVPKHPQLSFKIKLL FT QQEEIKNTNGTTLRSPCDHHNSLICNVEMPAEGGTGVEPSN" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '-' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..200 FT /number=1 FT /note="FIRST EXON; p-value: 0.391." FT exon 201..450 FT /number=2 FT /note="INTERNAL EXON; p-value: 0.727." FT exon 451..538 FT /number=3 FT /note="INTERNAL EXON; p-value: 0.739." FT exon 539..634 FT /number=4 FT /note="INTERNAL EXON; p-value: 0.235." FT exon 635..879 FT /number=5 FT /note="LAST EXON; p-value: 0.184." FT CONTIG join(NC_006583:8430141...8429942, 8424515...8424266, FT 8421732...8421645, 8416677...8416582, 8407240...8406996) XX SQ Sequence 879 BP; 249 A; 239 C; 222 G; 169 T; other; atgtggaaag tgcatcagga ctgttcagaa aaaaggaaag cttatccacc agctcagact 60 tcatttgtca gttgtgaccc aataggtgtg aacccctata ctgttgggtt tgcacctgag 120 tccaggtgcg aacccctcac actgccaggt ttacatctgt gccccacacc tcgcctcaga 180 gaagccatgg agcagaaaga cctgttccaa ggagtgagcc tcagagagct ggaaagctac 240 ttcccggggc ccattaggct tctgtcccgt ggcgaggtag cagctgtcat cctgcacaga 300 ggccaaggtg gggcagaggg aaaggcgggt acacaagctc atacctggag gcgaggcagg 360 gcctgggcct cagagcacag agaggctaag ccttcctctg ctcctcagga ttggcaggct 420 agagtcagcc ctgatcgggg ctccagtcag ggtgcacccc cgcagaacta ttttaaacag 480 gcagctggaa tgggccccaa aatcgccaca aggaggatgg accaaaaagt cattgcagaa 540 aaaactcctg tatttagtga ttggggtcta cagtctacac aagatccaat tcatggcttc 600 tatcatctca gcgacatccg cagccaagtt actggcagac ttctgccctg gcataactcg 660 agagccctgc ggtggcctga caaagacaca gacacacaaa atgtgaagct tgtccccaag 720 cacccacagc tgagcttcaa aatcaaacta ttgcaacaag aagaaattaa aaacacaaat 780 ggcacaaccc tcagaagccc ctgtgaccac cacaacagcc tcatatgcaa tgtggaaatg 840 cctgctgaag gtggcactgg tgtagaacca tccaactag 879 // ID NC006583_209; SV 1; special; RNA; MAM; 972 BP. XX AC NC006583_209; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_209; NC006583_209. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..972 FT /organism="Canis familiaris" FT CDS 1..972 FT /protein_id="NC006583_209" FT /db_xref="trGEN:NC006583_209" FT /translation="MGGGSLGGAAVWCLPLTQGAILETRDRIPRRAPEMKSEP FT RVTQGKDVLSGPRHVRAYLVGEQAFHGHTRTSQFNSAKKQKIISQHMEKKKDV FT HILTFCSSEIISKCTGWVCWRKEAKSGLYWAKDFFCAPTPVQRVTHVIRDEFE FT KSAQATFAIIFDLQNFLEVGIRDPKYFCLRVEALLRIPPGSSSYFKSPKSSKF FT GNTVKQPEFWGICPKLIVGTSTGSARLLCRNTKANSGGSWGGPWRKELQEDSL FT GHSELALYFSKSWGIMNACLRAPRDRDSSWDSQVTRCAAQVLPERSWKAGGVF FT PGASGGWGIMQTVNIIGDV" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '-' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..100 FT /number=1 FT /note="FIRST EXON; p-value: 0.217." FT exon 101..155 FT /number=2 FT /note="INTERNAL EXON; p-value: 0.272." FT exon 156..618 FT /number=3 FT /note="INTERNAL EXON; p-value: 0.341." FT exon 619..972 FT /number=4 FT /note="LAST EXON; p-value: 0.432." FT CONTIG join(NC_006583:8445453...8445354, 8440216...8440162, FT 8436612...8436150, 8435257...8434904) XX SQ Sequence 972 BP; 259 A; 221 C; 272 G; 220 T; other; atgggggggg gatccctggg tggcgcagcg gtttggtgcc tgcctttgac ccagggcgcg 60 atcctggaga cccgggatcg aatcccacgt cgggctcccg agatgaagtc agagcccaga 120 gtgacacaag gaaaggatgt tctctctggg ccgagacatg tgagagccta ccttgtagga 180 gagcaggctt tccatggaca cactcggacc tcgcaattta attcagcaaa gaaacaaaag 240 atcatatcac agcacatgga aaagaaaaag gatgttcata ttctgacatt ttgctctagt 300 gaaataatct ccaaatgcac aggatgggta tgttggagaa aagaagccaa gagtgggctc 360 tattgggcca aagatttctt ctgtgctccc acacctgttc agagggttac ccatgtcatc 420 agggatgagt ttgagaaatc agctcaggcc acatttgcca ttatttttga tcttcagaat 480 tttctagagg ttggcattag ggaccctaag tatttctgtc taagagttga agcacttcta 540 agaatccctc ctggctcaag cagctatttc aaatctccta aaagcagcaa atttggcaac 600 actgtgaagc agcccgagtt ctggggaatt tgccccaagc tcatagttgg cacttcaact 660 ggaagtgcca ggctcctctg taggaacaca aaagctaact cagggggcag ctggggtggg 720 ccctggagga aggagctgca ggaagactcc ctgggccatt cagaattggc cctttatttc 780 agtaaatcct gggggatcat gaatgcctgc ctgagagccc ccagagacag agacagcagc 840 tgggacagtc aagtcaccag atgtgcagct caagtccttc cagagagaag ttggaaggct 900 gggggggtct tccctggagc aagcggagga tggggaatca tgcagactgt caacatcatt 960 ggggatgtct ga 972 // ID NC006583_210; SV 1; special; RNA; MAM; 609 BP. XX AC NC006583_210; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_210; NC006583_210. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..609 FT /organism="Canis familiaris" FT CDS 1..609 FT /protein_id="NC006583_210" FT /db_xref="trGEN:NC006583_210" FT /translation="MAQRALLRNRGQSAGNEGVKDDMTRHTGRDPEDPGSNPT FT SGSQCMEPASPSACVSASLSDVHQGGKGVLVPGRKGEPLPSWLHLDKFSSPPP FT PPLPDGRPDPMRYQEERTTPDPGILRLGNCKATGINIVMSIHTQTGKKPQAKK FT EVIVTFQEAGRAAKILQERLPEKLQNTTYRHALSLENVGQVLSTVPFNLREID FT GSTQ" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '-' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..82 FT /number=1 FT /note="FIRST EXON; p-value: 0.884." FT exon 83..308 FT /number=2 FT /note="INTERNAL EXON; p-value: 0.447." FT exon 309..343 FT /number=3 FT /note="INTERNAL EXON; p-value: 0.277." FT exon 344..550 FT /number=4 FT /note="INTERNAL EXON; p-value: 0.284." FT exon 551..609 FT /number=5 FT /note="LAST EXON; p-value: 0.760." FT CONTIG join(NC_006583:8477141...8477060, 8476598...8476373, FT 8475647...8475613, 8474212...8474006, 8473435...8473377) XX SQ Sequence 609 BP; 179 A; 155 C; 153 G; 122 T; other; atggcccaaa gagcgcttct gagaaacaga ggtcagagcg caggaaatga gggtgtgaag 60 gatgacatga ccagacacac agggcgtgat cctgaagacc cgggatcgaa tcccacgtca 120 ggctcccagt gcatggagcc tgcttctccc tctgcctgtg tctctgcctc tctctctgat 180 gttcaccaag gtggaaaagg cgtcctggtg ccagggcgta aaggggagcc cttgccgagt 240 tggctgcacc ttgacaagtt ttcatcaccc cctcctccac cactgcctga tgggcgacca 300 gaccccatga ggtaccaaga ggagaggaca acacctgacc caggcatact cagactaggt 360 aactgtaaag ctactggaat taacatagtc atgagtattc acacccaaac agggaaaaag 420 cctcaagcaa agaaagaggt aatagtgaca tttcaagaag ccggtagagc agcaaagatt 480 ttgcaagaga gactcccaga aaaacttcaa aacacaactt atagacacgc actcagtctt 540 gagaatgtag gccaggtttt gagtactgtc ccttttaacc ttcgtgagat tgatggatca 600 acgcaatga 609 // ID NC006583_211; SV 1; special; RNA; MAM; 1449 BP. XX AC NC006583_211; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_211; NC006583_211. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..1449 FT /organism="Canis familiaris" FT CDS 1..1449 FT /protein_id="NC006583_211" FT /db_xref="trGEN:NC006583_211" FT /translation="MVRKSFGETQKWEVMAPFQTWFSGTEEGSSVYFGNFQSA FT FGCFTLRYREVHRDHQEIRSARKKRLNQEQIGESQPPGGPKGDISFVVRGLGG FT CAARGNVHQDDQSLCLSTRPHYDHVPCSLEGEGSKQEGINRQPIFIPSTWSAN FT TSCDVSVYWIPDTRTIMPSVYVQVTSQQMVNLGYPVPMIWVGGGASVAIDAMR FT TVASQKHRVQGVQVTQQALFYVKEGQRVGDMTQERQPPSLVANMEGAVLGYAT FT LKCFSLTFFPLPRCQPTRCFFRDLFLMGLTELLRPRSCDGRFPPSVPSIEPGK FT SVPSGIQVKPKKSAHNSVYSLPKLGPILKVVQVRGAWGQQETVTEEGGNVPLQ FT ERVCVFHVNRDGDGACRFAGRRRGAGGRSGSLLLRSPCALGVRGQAPTPAARC FT GLAAWPGSPRPRGPRGPGRALPQAQGAPAAGALGRGPAAGSTGSPRIQDELPL FT TCSSRASSLEETDLTCDDP" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '+' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..86 FT /number=1 FT /note="FIRST EXON; p-value: 0.266." FT exon 87..211 FT /number=2 FT /note="INTERNAL EXON; p-value: 0.435." FT exon 212..347 FT /number=3 FT /note="INTERNAL EXON; p-value: 0.255." FT exon 348..532 FT /number=4 FT /note="INTERNAL EXON; p-value: 0.250." FT exon 533..645 FT /number=5 FT /note="INTERNAL EXON; p-value: 0.211." FT exon 646..735 FT /number=6 FT /note="INTERNAL EXON; p-value: 0.505." FT exon 736..901 FT /number=7 FT /note="INTERNAL EXON; p-value: 0.588." FT exon 902..999 FT /number=8 FT /note="INTERNAL EXON; p-value: 0.737." FT exon 1000..1449 FT /number=9 FT /note="LAST EXON; p-value: 0.347." FT CONTIG join(NC_006583:8479267...8479352, 8479596...8479720, FT 8481414...8481549, 8481929...8482113, 8482904...8483016, FT 8494749...8494838, 8498085...8498250, 8498939...8499036, FT 8499797...8500246) XX SQ Sequence 1449 BP; 331 A; 394 C; 413 G; 311 T; other; atggttagaa aaagctttgg agagactcaa aagtgggaag tgatggcacc attccagaca 60 tggttctcag gcacagagga gggcagctct gtctactttg ggaacttcca atcagcattt 120 gggtgcttca ccctccgata cagagaggta cacagggatc atcaggagat aagaagtgct 180 agaaagaaaa ggctaaatca agagcaaata ggtgagtctc agccaccagg tgggcccaaa 240 ggagatatca gttttgttgt gagaggacta ggagggtgtg cagctcgagg taatgttcac 300 caggatgatc agtctctctg cctgtccacg aggccccact atgaccatgt tccatgttca 360 ctggaaggcg aaggctctaa acaggagggg atcaatagac agcctatatt tatcccttct 420 acctggagtg ccaatacttc ttgtgatgtg agtgtctact ggataccaga cacaagaaca 480 atcatgccat ctgtttatgt gcaggtcacc agccaacaga tggtaaactt gggctaccca 540 gtaccaatga tttgggttgg tggaggtgct tctgtggcca ttgatgccat gagaactgtg 600 gcttcccaga aacacagggt gcagggggtc caggtcaccc aacaggcact cttctacgtg 660 aaagagggac agagagtggg tgacatgacc caagaaagac aacccccttc gctggttgca 720 aatatggaag gagccgtcct cggatatgcc accctgaaat gcttttccct tacattcttc 780 ccattaccaa ggtgtcagcc tacacgttgt ttctttagag acctcttcct gatgggcctt 840 accgaacttc tgcgtccccg ctcttgtgat ggtcggttcc ccccaagtgt cccaagcata 900 gaacctggca aatctgtacc ctctggaatc caagttaagc caaagaaatc agctcataat 960 tctgtgtatt cacttcccaa acttggacct attctgaaag tcgtccaggt gaggggagca 1020 tggggtcaac aggagactgt cacagaagag ggtggaaatg tccctcttca ggagcgtgtg 1080 tgtgttttcc acgtgaaccg cgacggcgac ggggcttgcc ggttcgcagg acggcgccga 1140 ggagctgggg gccgctccgg gagcctcctg ctgcgctccc cttgcgccct cggggttcgg 1200 ggtcaggccc ccacgccggc ggcccgctgc ggcctcgcag cctggccggg ctccccccgc 1260 cccagaggac ccagaggtcc tggccgggct cttccccagg cccagggggc cccggccgcg 1320 ggggcgctgg gaaggggacc tgccgctggc tcgacgggaa gtccccggat tcaggacgag 1380 ctgccgctta cctgctcttc cagagcatct tccctggaag aaacggacct tacctgtgac 1440 gacccctga 1449 // ID NC006583_212; SV 1; special; RNA; MAM; 564 BP. XX AC NC006583_212; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_212; NC006583_212. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..564 FT /organism="Canis familiaris" FT CDS 1..564 FT /protein_id="NC006583_212" FT /db_xref="trGEN:NC006583_212" FT /translation="MSAGLECDTGSWRVCALTLEHRDKVAIQQATFHIVVNQG FT PSHFHFVTFRALVTSAESLHWLTGEKGGLEERCSTFYMSTEKLSASSTALSSG FT FDHHGSLLSTVGVVSRQNLGASCTLQLYTAALACEVGMSRSECGIYSPSIPAL FT QPDPSPHFSASESCIAINSFHSPNIEVLCSHDVSKCQQSLLE" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '+' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..66 FT /number=1 FT /note="FIRST EXON; p-value: 0.028." FT exon 67..195 FT /number=2 FT /note="INTERNAL EXON; p-value: 0.014." FT exon 196..353 FT /number=3 FT /note="INTERNAL EXON; p-value: 0.257." FT exon 354..564 FT /number=4 FT /note="LAST EXON; p-value: 0.644." FT CONTIG join(NC_006583:8512146...8512211, 8514594...8514722, FT 8524066...8524223, 8525192...8525402) XX SQ Sequence 564 BP; 147 A; 131 C; 128 G; 158 T; other; atgagtgcgg ggctggaatg tgacactgga agttggagag tttgtgctct caccctggag 60 cacagggaca aggtggccat tcagcaagct accttccaca tagtagtaaa tcagggaccc 120 agtcacttcc actttgtgac ttttagagcc ctggtgactt ctgctgaatc tctgcattgg 180 ctgacaggtg agaaaggagg tctggaagaa agatgcagta ctttttacat gagtacagaa 240 aagctttcag catcttcaac tgctttatca tcaggatttg atcatcacgg atctttatta 300 agtacagtgg gtgttgtcag cagacaaaac ctgggggcct cttgcacact ccaactttat 360 acagctgcct tagcatgtga agtaggcatg tccagatcag aatgtgggat ttattctcca 420 tcaatccctg ctttacaacc tgatccttct ccacatttct ctgcctcaga aagttgtatt 480 gccattaaca gtttccacag ccccaatatt gaagtcctct gttcacacga tgtatccaag 540 tgccagcaaa gcctgttgga atga 564 // ID NC006583_213; SV 1; special; RNA; MAM; 699 BP. XX AC NC006583_213; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_213; NC006583_213. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..699 FT /organism="Canis familiaris" FT CDS 1..699 FT /protein_id="NC006583_213" FT /db_xref="trGEN:NC006583_213" FT /translation="MERRPLWEARSTGFHLLEKVTRVSGPGSVCYTLSIAVVT FT ERTLDFEPEHPGFKSYLLSTSSDNDPEFVSIPRILEFRDQGAAWFCSAKNSSR FT LQTAMFSLSPPGLEGIQVSICKTGTVILVIARSQLQFYLFIHETDRHRQMEKQ FT APCREPDTALDLRTPGSRLEPKPLWKTVWRFLKELKIDLPYDPAIALLGIYPK FT DTDAMKHQDTCTPMFLAAMSTIAKLEGASVSIER" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '-' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..217 FT /number=1 FT /note="FIRST EXON; p-value: 0.286." FT exon 218..319 FT /number=2 FT /note="INTERNAL EXON; p-value: 0.001." FT exon 320..383 FT /number=3 FT /note="INTERNAL EXON; p-value: 0.000." FT exon 384..501 FT /number=4 FT /note="INTERNAL EXON; p-value: 0.000." FT exon 502..699 FT /number=5 FT /note="LAST EXON; p-value: 0.038." FT CONTIG join(NC_006583:8551423...8551207, 8543004...8542903, FT 8541707...8541644, 8537339...8537222, 8532323...8532126) XX SQ Sequence 699 BP; 184 A; 178 C; 177 G; 160 T; other; atggaacgga ggccactgtg ggaggctcga agcactggct tccacctgct ggaaaaggtg 60 acacgcgtca gcgggccagg tagtgtttgt tacactctgt caatcgcggt tgtcacggaa 120 aggacactcg attttgaacc agaacacccg ggattcaagt catatctctt gtctactagc 180 tcagacaatg acccggaatt tgtttctata cctagaattc tggagttccg agatcaaggt 240 gctgcgtggt tctgttctgc caagaactct tccaggttgc agaccgccat gttctccttg 300 agtccacctg gcctggaagg catccaggtc tccatctgta aaacggggac ggtgatactt 360 gtcattgcca ggtctcaact gcaattttat ttattcattc atgagacaga cagacatagg 420 cagatggaga agcaggctcc ctgcagggag cctgatacgg cacttgatct gaggaccccg 480 ggatcacgac ttgagccaaa gccactctgg aaaactgtgt ggaggttcct caaagagtta 540 aaaatagacc tgccctacga cccagcaatt gcactgctgg ggatttaccc caaagataca 600 gatgcaatga aacaccagga cacctgcacc ccgatgtttc tagcagcaat gtccacaata 660 gccaaactgg aaggagcctc ggtgtccatc gaaagatga 699 // ID NC006583_214; SV 1; special; RNA; MAM; 471 BP. XX AC NC006583_214; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_214; NC006583_214. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..471 FT /organism="Canis familiaris" FT CDS 1..471 FT /protein_id="NC006583_214" FT /db_xref="trGEN:NC006583_214" FT /translation="MKVALGKNRKTTVRGVVVDAGGDNEQEGQKARSDLGRRG FT GDLEHKRSLLVGNGHEAHARGVDERSQEGPGVRVRSPRGCLASGKQSALSVRS FT AETQTPDSPAFRAPSSAGIGARPVDEDLGLFQLFSSLLKQPLSATSPPGGLRA FT RPPRRASFRGA" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '+' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..43 FT /number=1 FT /note="FIRST EXON; p-value: 0.119." FT exon 44..134 FT /number=2 FT /note="INTERNAL EXON; p-value: 0.065." FT exon 135..471 FT /number=3 FT /note="LAST EXON; p-value: 0.973." FT CONTIG join(NC_006583:8552716...8552758, 8553485...8553575, FT 8558000...8558336) XX SQ Sequence 471 BP; 102 A; 136 C; 159 G; 74 T; other; atgaaagtgg cactgggaaa aaatagaaaa accacagtga gaggtgttgt ggtagatgct 60 gggggtgata acgaacaaga ggggcagaaa gccagaagtg accttggaag gaggggtggg 120 gaccttgaac acaaaaggtc actgctcgtg ggaaacgggc acgaggcaca cgcacgcggt 180 gtggacgaga ggagccaaga aggcccaggg gtccgggtgc ggagccctcg cgggtgcctc 240 gcgtcgggta aacagtcggc gctgtcggtt cgctcagctg aaacgcagac accggactcg 300 ccagcgtttc gtgctccttc cagcgcaggg atcggtgccc gccccgtgga cgaggatctc 360 ggactgtttc aattgttcag cagcctccta aagcagccac tctccgccac ctcgcctcct 420 ggcggcctcc gagcccgccc tccccgccgg gcgtcgttcc gcggcgccta a 471 // ID NC006583_215; SV 1; special; RNA; MAM; 1377 BP. XX AC NC006583_215; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_215; NC006583_215. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..1377 FT /organism="Canis familiaris" FT CDS 1..1377 FT /protein_id="NC006583_215" FT /db_xref="trGEN:NC006583_215" FT /translation="MEIFYKISKVSHTLIHLHSQLMKESAPIPDQNSSECRDR FT GSFLDILKAIYEKPTANIILNGETLGAFPLRSGTRQGCPLSPLLFNIVLEVLA FT SAIRQQKDIKGIQIGKEEVKLSLFADDMILYIENPKASTPRLLELIQQFGSVA FT GYKINAQKSVEFLYTNNETEEREIKESIPFTITPKSIRYLGINLTKDVKDLYP FT QNYRTLLKEIEEDTKRWKNIPCSWIGRINIVKMSMLPRAIYTFNAIPIKIPWT FT FFRELEQIILRFVWNQKRPRIARGILQKKTISGGITMPDFRLYYKAVVIKTVW FT YWHKNRHIDQWNRIETPEVDPELYGQLIFDKGGKTIHWKKDSLFNKWCWENWT FT STCRRMKLDHSLAPYTKINSKWMKDLNVRQDSIKILEKNTGNTLFELSHSNFL FT QDTSMKAKETKVKMILGLLHQDKKLLHSKGYSQQNSKTTYRMGEDICK" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '+' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..1377 FT /number=1 FT /note="SINGLE EXON; p-value: 0.873." FT CONTIG join(NC_006583:8559717...8561093 FT join(NC_006583:8559717...8561093) XX SQ Sequence 1377 BP; 536 A; 288 C; 252 G; 301 T; other; atggaaatct tttacaagat ttccaaggtg agccacacac ttattcacct gcatagtcaa 60 ctcatgaaag agtcagcacc cattcctgat caaaactctt cagagtgtag ggatagaggg 120 tcattcctcg acatcttaaa agccatctac gaaaagccca cagcaaatat cattctcaat 180 ggggaaacac tgggagcctt tcccctaaga tcaggaacaa gacagggatg tccactctca 240 ccactgctat tcaacatagt actggaagtc ctagcctcag caatcagaca acaaaaagac 300 attaaaggca ttcaaattgg caaagaagaa gtcaaactct ccctcttcgc cgatgacatg 360 atactctaca tagaaaaccc aaaagcctcc accccaagat tgctagaact catacagcaa 420 tttggtagcg tggcaggata caaaatcaat gcccagaaat cagtggaatt tctatacact 480 aacaatgaga ctgaagaaag agaaattaag gagtcaatcc catttacaat tacacccaaa 540 agcataagat acctaggaat aaacctaacc aaagatgtaa aggatctata ccctcaaaac 600 tatagaacac ttctgaaaga aattgaggaa gacacaaaga gatggaaaaa tattccatgc 660 tcatggattg gcagaattaa tattgtgaaa atgtcaatgc tacccagggc aatatacacg 720 tttaatgcaa tccctatcaa aataccatgg actttcttca gagagttaga acaaattatt 780 ttaagatttg tgtggaatca gaaaagaccc cgaatagcca ggggaatttt acaaaagaaa 840 accatatctg ggggcatcac aatgccagat ttcaggttgt actacaaagc tgtggtcatc 900 aagactgtgt ggtactggca caaaaacaga cacatagatc aatggaacag aatagagacc 960 ccagaagtgg accctgaact ttatggtcaa ctaatattcg ataaaggagg aaagactatc 1020 cattggaaaa aagacagtct cttcaataaa tggtgctggg aaaattggac atccacatgc 1080 agaagaatga aactagacca ctctcttgca ccatacacaa agataaactc aaaatggatg 1140 aaagatctaa atgtgagaca agattccatc aaaatcctag agaagaacac aggcaacacc 1200 ctttttgaac tcagccacag taacttcttg caagatacat ccatgaaggc aaaagaaaca 1260 aaagtgaaaa tgatattggg acttcttcat caagataaga agcttttgca cagcaaagga 1320 tacagtcaac aaaactcaaa gacaacctac agaatgggag aagatatttg caaatga 1377 // ID NC006583_216; SV 1; special; RNA; MAM; 675 BP. XX AC NC006583_216; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_216; NC006583_216. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..675 FT /organism="Canis familiaris" FT CDS 1..675 FT /protein_id="NC006583_216" FT /db_xref="trGEN:NC006583_216" FT /translation="MGKINKAGNHKCWRGCGEKGILLHCWWECELVQPLWKTV FT WRFLKELKIELPYDPAIALLGIYPNDSDAMKRRDTCTPMFIAAMATIAKLWKE FT PRCPSKDEWIKKMWSMYTMEYYSAIRNDKYPPFASTWMELEGIMLSEQLNRVL FT QVRQESIWKRERATLTVPVSLWCEVDAEPLFDGRRIPRGYHTINLSDLCRPSG FT VHCSSSVRALEALEVPRLCVLTSFLV" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '+' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..417 FT /number=1 FT /note="FIRST EXON; p-value: 0.723." FT exon 418..539 FT /number=2 FT /note="INTERNAL EXON; p-value: 0.189." FT exon 540..675 FT /number=3 FT /note="LAST EXON; p-value: 0.474." FT CONTIG join(NC_006583:8561320...8561736, 8564566...8564687, FT 8564882...8565017) XX SQ Sequence 675 BP; 201 A; 141 C; 172 G; 161 T; other; atggggaaaa ttaacaaggc aggaaaccac aaatgttgga gaggatgcgg agaaaaggga 60 atcctcttac actgttggtg ggaatgtgaa ctggtgcagc cactctggaa aactgtgtgg 120 aggttcctca aagagttaaa aatagagctg ccctacgacc cagcaattgc actgttgggg 180 atttacccca atgattcaga tgcaatgaaa cgccgggaca cctgcacccc aatgtttata 240 gcagcaatgg ccacaatagc caagctgtgg aaggagcctc ggtgtccatc gaaagatgaa 300 tggataaaga agatgtggtc tatgtataca atggaatatt actcagctat tagaaatgac 360 aaatacccac catttgcttc aacgtggatg gaactggagg gtattatgct gagtgaacaa 420 ttaaacaggg tccttcaggt aagacaagaa tccatttgga aaagagagag agcaacactt 480 actgtaccag tcagcttatg gtgtgaagtt gacgctgagc ccctgtttga tggcagaagg 540 atcccaagag ggtatcacac tattaattta tcagatttat gcagaccttc tggggtccac 600 tgcagcagct ccgtccgtgc tttagaggcc ctggaagttc ctcgcctctg tgtgctcaca 660 tccttcctcg tgtaa 675 // ID NC006583_217; SV 1; special; RNA; MAM; 810 BP. XX AC NC006583_217; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_217; NC006583_217. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..810 FT /organism="Canis familiaris" FT CDS 1..810 FT /protein_id="NC006583_217" FT /db_xref="trGEN:NC006583_217" FT /translation="MNYWDFIKIRSFCTAKDTVNKTQRQPTEWEKIFANDVSD FT KGLVSKIYKELIKLNTKETNNPIMKWAKDMKRNLTEEDIDMANKHMRKCCASL FT AIREIQIKTTMRYHLTPPLWKTVWRFLKELKIDLPYDPAIALLGIYPKDTNAM FT KRRDTCTPMFIAAMATIAKLWKEPRCPSKDEWIKKMWFMYTMEYSSAIRNDKY FT PPFASTWMELEGIMLSEKNLPSSKSVQKCGHQVPKELFEFLIIFQLKESPKCK FT LYASRTVDESLEDSVIKH" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '+' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..327 FT /number=1 FT /note="FIRST EXON; p-value: 0.973." FT exon 328..645 FT /number=2 FT /note="INTERNAL EXON; p-value: 0.975." FT exon 646..810 FT /number=3 FT /note="LAST EXON; p-value: 0.510." FT CONTIG join(NC_006583:8572752...8573078, 8573184...8573501, FT 8578633...8578797) XX SQ Sequence 810 BP; 298 A; 173 C; 163 G; 176 T; other; atgaactatt gggacttcat caagataaga agcttttgca cagcaaagga tacagtcaac 60 aaaactcaaa gacaacctac agaatgggag aagatatttg caaatgacgt atcagataaa 120 gggctagttt ccaagatcta taaagaactt attaaactca acaccaaaga aacaaacaat 180 ccaatcatga aatgggcaaa agacatgaag agaaatctca cagaggaaga catagacatg 240 gccaacaagc acatgagaaa atgctgtgca tcacttgcca tcagggaaat acaaatcaaa 300 accacaatga gataccacct cacaccacca ctctggaaaa ctgtgtggag gttcctcaaa 360 gagttaaaaa tagacctgcc ctacgaccca gcaattgcac tgttggggat ttaccccaaa 420 gatacaaatg caatgaaacg ccgggacacc tgcaccccaa tgtttatagc agcaatggcc 480 acgatagcca aactgtggaa ggagcctcgg tgtccatcga aagatgaatg gataaagaag 540 atgtggttta tgtatacaat ggaatattcc tcagccatta gaaatgacaa atacccacca 600 tttgcttcaa cgtggatgga actggagggt attatgctga gtgaaaaaaa cttaccctcc 660 tccaaatctg ttcagaaatg tggccaccag gtccccaagg aactgtttga gtttctcatc 720 atctttcagc taaaggagag tcctaaatgt aaactttatg cctcaaggac agtggatgaa 780 tctctggagg attcagtcat taaacactga 810 // ID NC006583_218; SV 1; special; RNA; MAM; 1224 BP. XX AC NC006583_218; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_218; NC006583_218. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..1224 FT /organism="Canis familiaris" FT CDS 1..1224 FT /protein_id="NC006583_218" FT /db_xref="trGEN:NC006583_218" FT /translation="MSERGVGDTDFHYRMIFFRWTPSMARKIFSSSSDPEKSL FT QTQHTAKYECDSILSICPPGFTQDPKEANITRKIRDSLSLGFQSTKVTGIEQL FT NPGSLKADLAGCYKPGGVTLITELKISEIDLGDPGVLSPKYGGLHSVEVIYTV FT QGEPRVIHGGTERKYEALTDVVSSEIGDTYWALLLHDAQPRLGTLFGSFLSLS FT TLFGAISKSARRVARVLPAVYRCVGGFDKTWASAAGGSGAATAKARGARGAQG FT SGEAKPVARSSQLAPSPEQPLENPKRGLPFGRILGVLILSRLLMTYRFDSVWS FT GNVLTPKVCRNKYHGLVGWNYRSLFSQNHGGWEVGDLGASWFGFSLNYARVPL FT KVCHGTSGHLCTLSGNHEAKSWGSPPNSNSFTECQHQMPPLHDHVGTKLK" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '-' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..46 FT /number=1 FT /note="FIRST EXON; p-value: 0.554." FT exon 47..120 FT /number=2 FT /note="INTERNAL EXON; p-value: 0.006." FT exon 121..273 FT /number=3 FT /note="INTERNAL EXON; p-value: 0.044." FT exon 274..356 FT /number=4 FT /note="INTERNAL EXON; p-value: 0.178." FT exon 357..552 FT /number=5 FT /note="INTERNAL EXON; p-value: 0.128." FT exon 553..832 FT /number=6 FT /note="INTERNAL EXON; p-value: 0.413." FT exon 833..885 FT /number=7 FT /note="INTERNAL EXON; p-value: 0.126." FT exon 886..934 FT /number=8 FT /note="INTERNAL EXON; p-value: 0.184." FT exon 935..1046 FT /number=9 FT /note="INTERNAL EXON; p-value: 0.193." FT exon 1047..1224 FT /number=10 FT /note="LAST EXON; p-value: 0.171." FT CONTIG join(NC_006583:8679209...8679164, 8663098...8663025, FT 8649744...8649592, 8607429...8607347, 8600406...8600211, FT 8595651...8595372, 8588308...8588256, 8587417...8587369, FT 8586242...8586131, 8582369...8582192) XX SQ Sequence 1224 BP; 331 A; 285 C; 319 G; 289 T; other; atgagtgaaa gaggagtagg agatacagat tttcactata gaatgatttt ctttcggtgg 60 actccttcta tggcaaggaa aatattctcc tcatcctctg acccagaaaa atctcttcag 120 acacaacaca cagccaagta tgagtgtgat tccatactga gtatttgtcc accaggtttt 180 acacaagacc ccaaggaagc caacataaca aggaaaatta gagattctct ttcattggga 240 ttccagtcta ctaaggtgac aggcatcgaa caattaaacc caggctccct gaaggcagac 300 cttgctggtt gttacaagcc agggggagtg accttgataa cagaattgaa gatcagtgaa 360 atagatttgg gtgatccagg tgttctatct ccaaagtatg gtggtctcca cagtgtggag 420 gttatttata cagttcaagg agaacccaga gtgatccatg gagggacaga aagaaaatat 480 gaagccctta ctgatgttgt atcatctgaa ataggagaca catattgggc tttgctattg 540 catgatgcac agcctcgcct ggggactctg ttcgggtcat ttctgagcct cagcacactc 600 tttggtgcaa taagcaagtc agcccggagg gtagcaagag tccttcccgc agtttatcga 660 tgtgtcggtg gttttgacaa gacgtgggcc tcggcagctg gagggtcagg ggcggccacg 720 gccaaggccc gcggcgcaag gggagcgcag gggtcggggg aagcgaagcc ggtggcccgc 780 agctcgcagc tcgcaccaag cccagagcag cccctggaaa acccaaagcg aggactaccc 840 ttcggcagaa tacttggggt tctcattctc tcacggctgc tgatgacata ccgatttgat 900 tctgtttgga gtggcaatgt cctcacccca aaagtttgcc gtaacaaata ccatggactg 960 gttggttgga actacagaag tttattttct cagaatcatg gaggctggga agtcggagat 1020 ctaggtgcca gctggtttgg tttcagctta aactacgcca gagtgccctt gaaagtgtgc 1080 catggtactt cagggcacct ctgcacactg tctgggaacc atgaagctaa gtcatggggc 1140 tccccaccga actctaacag tttcacggaa tgccaacatc agatgccacc actccatgac 1200 catgttggaa caaaactaaa atga 1224 // ID NC006583_219; SV 1; special; RNA; MAM; 330 BP. XX AC NC006583_219; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_219; NC006583_219. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..330 FT /organism="Canis familiaris" FT CDS 1..330 FT /protein_id="NC006583_219" FT /db_xref="trGEN:NC006583_219" FT /translation="MSNIQPLPLKISKLGEKCGHMERYNSEVKAVIETWPTAS FT GNGTPFHETSKNAQETKEGRLGSSEAERLPVAQGVILGSWDRVLHQAPYKEPA FT SHSDCVFASLCVSLMNR" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '+' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..330 FT /number=1 FT /note="SINGLE EXON; p-value: 0.736." FT CONTIG join(NC_006583:8685963...8686292 FT join(NC_006583:8685963...8686292) XX SQ Sequence 330 BP; 86 A; 74 C; 88 G; 82 T; other; atgagtaaca ttcagcctct gccattgaaa atctctaagc ttggtgaaaa atgtgggcat 60 atggagagat ataattctga ggtaaaggca gtgatagaga catggccaac tgcttctggg 120 aacggaacac cctttcatga aacaagcaaa aacgctcaag aaactaagga gggacgcctg 180 ggtagctcag aggctgagcg tctgcctgtg gctcagggtg tgatcctggg gtcctgggat 240 cgagtcctgc atcaggctcc ctacaaggag cctgcttctc actctgactg tgtctttgcc 300 tctctctgtg tgtctctcat gaatagataa 330 // ID NC006583_220; SV 1; special; RNA; MAM; 1458 BP. XX AC NC006583_220; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_220; NC006583_220. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..1458 FT /organism="Canis familiaris" FT CDS 1..1458 FT /protein_id="NC006583_220" FT /db_xref="trGEN:NC006583_220" FT /translation="MVEEDNLAPWCCPNKYHTQGGFNESLFSGSSGDQKSKIN FT VSSGLFPSEVLKVESATTLPWLLVARLQSLAASENQVLIVLHILDSCLLEQAP FT LRAMVLPLATANATGPKEKKEAIGYLGVPIGTMMATECATCQAMLLALHTDVS FT SFIPFHNLMSVTAVQNFLVFDDLTGSEVRYTAVLVRTYDYISLYMLKGIKVAD FT GIRVAIQLAFMRSFWVIQVGLINHQCFKWERRRSKTIPPPPVLQCDKDLNWLW FT LSEKGLSHLQKFHQCFLYLDPSQTQQLPPKARNGEAGLRAGRWPRRAGERRGL FT CSDGGASISRSLELTRDKEPSSKHCTPSPSHVARGAGPGVTLGRASLGAEPQA FT RLPRLPQQDAQDFLGELLRKVQPELKSEGTTRRTRIPFSRRKLTKQVLKAVST FT TVHGQLLSQATCISCNYKSNTIEPFWDLSLEFPDRYHRAEKGSVPLNQTECLL FT TEKLAKFTETGSGRENLRLGPA" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '+' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..211 FT /number=1 FT /note="FIRST EXON; p-value: 0.883." FT exon 212..317 FT /number=2 FT /note="INTERNAL EXON; p-value: 0.874." FT exon 318..464 FT /number=3 FT /note="INTERNAL EXON; p-value: 0.815." FT exon 465..542 FT /number=4 FT /note="INTERNAL EXON; p-value: 0.538." FT exon 543..765 FT /number=5 FT /note="INTERNAL EXON; p-value: 0.001." FT exon 766..1458 FT /number=6 FT /note="LAST EXON; p-value: 0.105." FT CONTIG join(NC_006583:8692916...8693126, 8696562...8696667, FT 8699054...8699200, 8700986...8701063, 8737281...8737503, FT 8749128...8749820) XX SQ Sequence 1458 BP; 337 A; 408 C; 394 G; 319 T; other; atggtggagg aggacaattt ggctccctgg tgctgcccga acaaatacca cacacaaggt 60 ggcttcaatg agagtttatt ttctggcagc tctggagacc agaagtccaa gatcaacgtg 120 tcttcagggt tgtttccttc tgaggttctt aaggtagaat ctgccacgac tctcccctgg 180 cttctggtgg ctcgcctgca atccttggct gccagtgaaa accaagtgct gatagttctc 240 cacattttgg attcctgtct cctggaacag gctccactca gagcaatggt gcttcctctg 300 gccacggcca atgccacggg accaaaggag aaaaaagaag ccataggata tctaggtgta 360 cccataggaa caatgatggc aacggagtgt gccacgtgtc aggcaatgct cttagcgctt 420 cacactgatg ttagctcgtt cattcctttc cacaacctta tgagtgtgac tgctgttcag 480 aatttcctcg tttttgatga cctcactggt tctgaggtca gatatacagc agtactggtc 540 agaacctatg attatatatc cctttatatg ttgaagggaa ttaaggtggc agatggaatt 600 agggttgcta tccagctagc cttcatgaga tcattctggg ttatccaggt ggggctaata 660 aatcaccagt gttttaaatg ggagagaagg agatctaaga ccataccacc accccctgtg 720 ctgcaatgtg acaaagacct caactggctg tggctatcag aaaaggggct cagccacctc 780 cagaagttcc accagtgttt tctgtacctc gacccttccc agacccaaca gctgccgccc 840 aaggcccgca acggggaggc tgggctccgg gcaggccggt ggcctcggcg tgcgggcgag 900 cgcaggggcc tctgctccga cggcggcgcc tccatcagca ggagcctaga actcacacgg 960 gacaaggagc cgagctcgaa gcactgcaca ccctctccga gtcatgtggc ccggggagcg 1020 ggccctggtg tcacccttgg ccgtgcttca ctcggtgcgg agccgcaggc ccgccttccg 1080 cggctgcccc agcaggacgc gcaggacttc ctgggcgagc tgttgcgcaa agtgcagcca 1140 gagctcaagt ccgagggcac cacgcgccgg acccgcatcc ccttctcccg gaggaagctc 1200 accaaacagg tcttaaaggc agtgagcacc acagtccacg ggcagctact cagtcaggcc 1260 acatgtatat catgcaatta caaatccaat accattgagc ccttctggga tctgtccctg 1320 gagttccctg accggtatca ccgcgcagaa aaggggtctg tccctttgaa tcagacagag 1380 tgcctgctca ctgagaagct ggctaagttc acagagacag gctctggaag ggagaattta 1440 cgcttgggac cagcgtaa 1458 // ID NC006583_221; SV 1; special; RNA; MAM; 2019 BP. XX AC NC006583_221; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_221; NC006583_221. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..2019 FT /organism="Canis familiaris" FT CDS 1..2019 FT /protein_id="NC006583_221" FT /db_xref="trGEN:NC006583_221" FT /translation="MDFTDIYRTLHPNSTEYTFFSSAHRTFSKIDHILGHKSG FT LNRYQKIGIVPCIFSDHNALKLELNHNKKFGRTSNTLRLRTILLKDERVNQEI FT KEELKRFMETNENEDTTIQNLWDAAKAVLRGKYILFGKIERDGVLPNSFYEAS FT ITLIPKPDKDPTKKENYRPISLMNMDAKILNKILVNRIKQYIKKIIHHDQVGF FT IPGTQGWFNTCEKINVIHHISKRKTKNHMILSLDAEKAFDKIQHPFLIKTLQS FT VGIEGTFLNILKAFYKKPTANIILNGEALGAFPLRSGTRQGCPLSPLLFNIVL FT EVLASAIRQQKDIKGIQIGKEEVKLSLFADDMILYIENPKASTSRMLELIQQF FT GSMAGYKINAQKSVAFLYTNNETEEREIKESIPFTIAPKSIRYLGINLTKEIR FT SFCTAKDTVNKTQRQPTEWEKIFANDVSDKGLVSKIYKELIKLNTKETNNPIM FT KWAKDMKRNLTEEDIDMANKHMRKCSASLAIREIQIKTTMRYHLTPVRNHKCW FT RGCGEKGTLLHCWWECELVQPFWKTVWRFLKELKIDLPYDPAIALLGIYPNDS FT DAMKPMDTCTPMFIAAMATIAKLWKEPRCPSKDEWIKKMWSMYRMEYYSAIRN FT DKYPPFASTWMELEGIMLSEHSGKSVKMLVQHKIEEEGLQILHRQGIETL" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '+' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..378 FT /number=1 FT /note="FIRST EXON; p-value: 0.052." FT exon 379..1224 FT /number=2 FT /note="INTERNAL EXON; p-value: 0.056." FT exon 1225..1926 FT /number=3 FT /note="INTERNAL EXON; p-value: 0.547." FT exon 1927..2019 FT /number=4 FT /note="LAST EXON; p-value: 0.517." FT CONTIG join(NC_006583:8754748...8755125, 8755744...8756589, FT 8757304...8758005, 8761223...8761315) XX SQ Sequence 2019 BP; 779 A; 422 C; 387 G; 431 T; other; atggatttca cagatatcta cagaacttta catccaaact caactgaata cacattcttc 60 tcaagtgcac atagaacttt ctccaaaata gaccacatac tgggtcacaa atcgggtctg 120 aaccgatacc aaaagattgg gatcgtcccc tgcatattct cagaccataa tgccttgaaa 180 ttagaactaa atcacaacaa gaagtttgga aggacctcaa acacgttgag gttaaggact 240 atcctgctaa aagatgaaag agtcaaccag gaaattaagg aagaattaaa aagattcatg 300 gaaactaatg agaatgaaga tacaaccatt caaaatctgt gggatgcagc aaaagcagtc 360 ctaaggggga aatacatcct gtttggaaag atagaaagag atggagtact tccaaattcg 420 ttctatgagg ccagcatcac cttaattcca aaaccagaca aagaccccac caaaaaggag 480 aattacagac caatatccct gatgaacatg gatgcaaaaa ttctcaacaa gatactagtc 540 aataggatca aacaatacat taagaaaatt attcaccatg accaagtagg atttatcccc 600 gggacacaag gctggttcaa cacttgtgaa aaaatcaatg tgattcatca tatcagcaag 660 agaaaaacca agaaccatat gatcctctca ttagatgcag agaaagcatt tgacaaaata 720 cagcatccat tcctgatcaa aactcttcag agtgtaggga tagagggaac attcctcaac 780 atcttaaaag ccttctacaa aaagcccaca gcaaatatca ttctcaatgg ggaagcactg 840 ggagcctttc ccctaagatc aggaacaaga cagggatgtc cactctcacc actgctattc 900 aacatagtac tggaagtcct agcctcagca atcagacaac aaaaagacat taaaggcatt 960 caaattggca aagaagaagt caaactctcc ctcttcgctg atgacatgat actctacata 1020 gaaaacccaa aagcctccac ctcaagaatg ctagaactca tacagcaatt tggtagcatg 1080 gcaggataca aaatcaatgc ccagaaatca gtggcatttc tatacactaa caatgagact 1140 gaagaaagag aaattaagga gtcaatccca tttacaattg cacccaaaag cataagatac 1200 ctaggaataa acctaaccaa agagataaga agcttttgca cagcaaagga tacagtcaac 1260 aaaactcaaa gacaacctac agaatgggag aagatatttg caaatgacgt atcagataaa 1320 gggttagttt ccaagatcta taaagaactt attaaactca acaccaaaga aacaaacaat 1380 ccaatcatga aatgggcaaa agacatgaag agaaatctca cagaggaaga catagacatg 1440 gccaacaagc acatgagaaa atgctctgca tcacttgcca tcagggaaat acaaatcaaa 1500 accacaatga gataccacct cacaccagtg agaaaccaca aatgttggag aggatgcgga 1560 gaaaagggaa ccctcttaca ctgttggtgg gaatgtgaac tggtgcagcc attctggaaa 1620 actgtgtgga ggttcctcaa agagttaaaa atagacctgc cctacgaccc agcaattgca 1680 ctgttgggga tttatcccaa tgattcagat gcaatgaaac ccatggacac ctgcaccccg 1740 atgtttatag cagcaatggc cacaatagcc aagctgtgga aggagcctcg gtgtccatcc 1800 aaagatgaat ggataaagaa gatgtggtct atgtatagaa tggaatatta ctcagctatt 1860 agaaatgaca aatacccacc atttgcttcc acgtggatgg aactggaggg tattatgctg 1920 agtgaacatt caggaaaatc tgtcaaaatg ctagttcagc ataagataga ggaagaggga 1980 cttcagatat tacacagaca aggaatagag actttatga 2019 // ID NC006583_222; SV 1; special; RNA; MAM; 258 BP. XX AC NC006583_222; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_222; NC006583_222. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..258 FT /organism="Canis familiaris" FT CDS 1..258 FT /protein_id="NC006583_222" FT /db_xref="trGEN:NC006583_222" FT /translation="MVTRIPHTDSRQFRPTFHLLPRHGAPDSCVEEQGPITDV FT AYEALPWALKGISESNGASFVGTYGSPPEIAQGVGGCLAASLTSAP" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '-' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..65 FT /number=1 FT /note="FIRST EXON; p-value: 0.723." FT exon 66..148 FT /number=2 FT /note="INTERNAL EXON; p-value: 0.199." FT exon 149..223 FT /number=3 FT /note="INTERNAL EXON; p-value: 0.577." FT exon 224..258 FT /number=4 FT /note="LAST EXON; p-value: 0.233." FT CONTIG join(NC_006583:8783456...8783392, 8773379...8773297, FT 8772003...8771929, 8768020...8767986) XX SQ Sequence 258 BP; 61 A; 71 C; 60 G; 66 T; other; atggtaacaa ggattcccca cactgattcc cgacaattca gacctacttt ccatctattg 60 cccagacatg gagctccaga ctcctgtgta gaagaacagg gtcctattac tgatgtagct 120 tatgaagctc tcccctgggc cctgaaagga atatctgaat ccaatggtgc atcatttgtt 180 ggcacctatg gaagtccccc cgaaattgct cagggtgtgg ggggatgttt ggcagcatcc 240 ctgacctctg ccccctag 258 // ID NC006583_223; SV 1; special; RNA; MAM; 222 BP. XX AC NC006583_223; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_223; NC006583_223. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..222 FT /organism="Canis familiaris" FT CDS 1..222 FT /protein_id="NC006583_223" FT /db_xref="trGEN:NC006583_223" FT /translation="MAESSQVKLLWFQTLHYVECVVPPKLEQLSGGKEKLVID FT EEDGTQIYLASEIRSSIASNGDDDDDDDDDDYLN" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '-' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..124 FT /number=1 FT /note="FIRST EXON; p-value: 0.345." FT exon 125..161 FT /number=2 FT /note="INTERNAL EXON; p-value: 0.064." FT exon 162..222 FT /number=3 FT /note="LAST EXON; p-value: 0.317." FT CONTIG join(NC_006583:8811516...8811393, 8809600...8809564, FT 8804398...8804338) XX SQ Sequence 222 BP; 71 A; 34 C; 59 G; 58 T; other; atggctgagt catctcaggt aaaactactt tggttccaga cactgcatta cgtcgagtgt 60 gtggttcctc caaagctgga acagctcagt ggaggaaaag aaaagcttgt gatagatgaa 120 gaagatggca cccagatcta tttggccagt gagatacgaa gttcaatagc aagtaatggt 180 gatgatgatg atgatgatga tgatgatgat tacctgaatt aa 222 // ID NC006583_224; SV 1; special; RNA; MAM; 615 BP. XX AC NC006583_224; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_224; NC006583_224. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..615 FT /organism="Canis familiaris" FT CDS 1..615 FT /protein_id="NC006583_224" FT /db_xref="trGEN:NC006583_224" FT /translation="MRGDSAVRGLPDWTGAGQGPARALQAADGVVQGDTGPTR FT RDDPGLCRLLLPPNAFSEPMKATRNIEFTAGIGKRSNETREKSKDKQGIIKAS FT PGTREMQIKTTMRCYLTPVRMAKIKSQETTNVSDNTNVGEDAEKGELAYAAGS FT FCKMTYPDKHMCKEMLINNTFLIETCFWAFTLLSLQNLNNRVTFFQLNSLNSK FT KSPSIL" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '-' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..55 FT /number=1 FT /note="FIRST EXON; p-value: 0.808." FT exon 56..188 FT /number=2 FT /note="INTERNAL EXON; p-value: 0.047." FT exon 189..281 FT /number=3 FT /note="INTERNAL EXON; p-value: 0.045." FT exon 282..430 FT /number=4 FT /note="INTERNAL EXON; p-value: 0.007." FT exon 431..615 FT /number=5 FT /note="LAST EXON; p-value: 0.982." FT CONTIG join(NC_006583:8834506...8834452, 8834286...8834154, FT 8830940...8830848, 8827487...8827339, 8825497...8825313) XX SQ Sequence 615 BP; 200 A; 137 C; 146 G; 132 T; other; atgagaggag acagtgcggt cagaggtctg ccagactgga caggtgctgg gcaaggacca 60 gcgagggctc tgcaggcagc tgatggtgtg gtgcagggcg acacagggcc tacccgcagg 120 gatgatcctg ggctctgcag gctcctcctt cctcctaatg cattttcaga accaatgaaa 180 gccacacgga acatagaatt cacagctgga attgggaaaa gatctaatga aaccagggaa 240 aagtctaagg ataaacaagg tatcataaaa gcttcgccag gtaccaggga aatgcaaatc 300 aaaaccacaa tgagatgcta tctcacacca gtcagaatgg ctaaaattaa aagtcaggaa 360 acaacaaatg ttagtgacaa cacgaatgtt ggtgaggatg cagagaaagg ggaactcgct 420 tatgctgcag gaagtttctg caaaatgact tacccagaca aacacatgtg caaagagatg 480 cttatcaaca acactttcct cattgaaact tgcttctggg ccttcacgtt gctgagtcta 540 caaaacctaa acaatcgtgt aacatttttc cagttgaact cccttaattc gaaaaagtca 600 ccttcaatcc tttga 615 // ID NC006583_225; SV 1; special; RNA; MAM; 363 BP. XX AC NC006583_225; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_225; NC006583_225. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..363 FT /organism="Canis familiaris" FT CDS 1..363 FT /protein_id="NC006583_225" FT /db_xref="trGEN:NC006583_225" FT /translation="MGRRKKERKKKERKKERKKERKKERKKEERKKERRKKER FT KKERKKERKKKKKEERKKERKKERKKERKKKERKKERKKERKKERKRNRHYIP FT IPLRIVWTCVYKSYWSQPYPVLLVFMSQ" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '-' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..363 FT /number=1 FT /note="SINGLE EXON; p-value: 0.832." FT CONTIG join(NC_006583:8841106...8840744 FT join(NC_006583:8841106...8840744) XX SQ Sequence 363 BP; 213 A; 25 C; 87 G; 38 T; other; atgggaagaa gaaagaaaga aagaaagaag aaagaaagaa agaaagaaag aaagaaagaa 60 agaaagaaag aaagaaagaa agaagaaaga aagaaagaaa gaagaaagaa agaaagaaag 120 aaagaaagaa agaaagaaag aaagaagaaa aagaaagaag aaagaaagaa agaaagaaag 180 aaagaaagaa agaaagaaag aaagaagaaa gaaagaaaga aagaaagaaa gaaagaaaga 240 aagaaagaaa gaaagagaaa tagacattac attcccatcc cattgcgcat tgtttggacc 300 tgcgtgtaca aatcttactg gagtcaacct tatcctgtgc ttcttgtttt catgagtcag 360 tag 363 // ID NC006583_226; SV 1; special; RNA; MAM; 399 BP. XX AC NC006583_226; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_226; NC006583_226. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..399 FT /organism="Canis familiaris" FT CDS 1..399 FT /protein_id="NC006583_226" FT /db_xref="trGEN:NC006583_226" FT /translation="MATIAKLWKEPRCPTKDEWIKKMWSMYTMEYYSAIRNDK FT YPPFASTWMELEGIMLSEGLNTTSLSQGCISKAASGKWNLYTKDSKGDEEPAN FT AQVKLTGIILQGEGERMKSKICWRKKDLIQLWQQDVPKTI" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '+' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..171 FT /number=1 FT /note="FIRST EXON; p-value: 0.573." FT exon 172..295 FT /number=2 FT /note="INTERNAL EXON; p-value: 0.656." FT exon 296..399 FT /number=3 FT /note="LAST EXON; p-value: 0.036." FT CONTIG join(NC_006583:8851865...8852035, 8857411...8857534, FT 8863448...8863551) XX SQ Sequence 399 BP; 133 A; 76 C; 105 G; 85 T; other; atggccacga tagccaaact gtggaaggag cctcggtgcc caacgaaaga tgaatggata 60 aagaagatgt ggtctatgta tacaatggaa tattactcag ctattagaaa tgacaaatac 120 ccaccatttg cttcaacgtg gatggaactg gagggtatta tgctgagtga aggtctcaat 180 accacatcac tgtctcaagg ctgtatttct aaggcagctt ctgggaagtg gaacctatat 240 accaaggaca gcaaagggga tgaggagcct gcaaatgccc aggtgaagct cacaggtatc 300 atcctacaag gagaaggtga gagaatgaaa tcaaagatct gctggagaaa gaaagacctc 360 atccagttgt ggcagcagga tgttccgaag acaatctag 399 // ID NC006583_227; SV 1; special; RNA; MAM; 390 BP. XX AC NC006583_227; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_227; NC006583_227. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..390 FT /organism="Canis familiaris" FT CDS 1..390 FT /protein_id="NC006583_227" FT /db_xref="trGEN:NC006583_227" FT /translation="MCCMETQSQKSHSREHSFQRFKSTQQHQKQFFLQLLLWN FT RAIGNDDKWSENVLFLQRCDSNKCQLFQQQQLLCSGRHKYIHGEKIAINRKQE FT KPQGMFPSPLLERDLECYGIEVPHKIQVEVFEKSLDG" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '-' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..234 FT /number=1 FT /note="FIRST EXON; p-value: 0.769." FT exon 235..390 FT /number=2 FT /note="LAST EXON; p-value: 0.273." FT CONTIG join(NC_006583:8866719...8866486, FT 8865070...8864915) XX SQ Sequence 390 BP; 135 A; 70 C; 89 G; 96 T; other; atgtgctgta tggaaacaca gtcacagaaa agccattcca gggaacattc tttccagaga 60 tttaagagca cacagcaaca tcagaaacag tttttcttac agctgctact gtggaacaga 120 gcgataggaa atgatgacaa atggtctgaa aatgtgttgt tcctgcagag atgcgattcg 180 aataagtgtc agcttttcca gcaacagcaa ttactctgct ctgggagaca taagtatatt 240 catggagaaa aaattgcaat aaacagaaag caggaaaaac cacaaggaat gtttcccagc 300 cctctgcttg agagagactt ggaatgctat ggcattgaag ttcctcataa gatacaagta 360 gaggtatttg agaagtcact tgatggatag 390 // ID NC006583_228; SV 1; special; RNA; MAM; 162 BP. XX AC NC006583_228; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_228; NC006583_228. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..162 FT /organism="Canis familiaris" FT CDS 1..162 FT /protein_id="NC006583_228" FT /db_xref="trGEN:NC006583_228" FT /translation="MIWKQNVTKLNGISAFKEDKAHVLSPEIHGYYLNVQEGS FT RIKRINQESKTLQC" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '-' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..64 FT /number=1 FT /note="FIRST EXON; p-value: 0.957." FT exon 65..162 FT /number=2 FT /note="LAST EXON; p-value: 0.892." FT CONTIG join(NC_006583:8874207...8874144, FT 8870185...8870088) XX SQ Sequence 162 BP; 68 A; 21 C; 34 G; 39 T; other; atgatttgga agcaaaatgt gacaaagctc aatggaataa gtgcatttaa agaagataag 60 gcacatgtgt taagtccaga aattcatggc tactatttga atgtgcagga aggatccagg 120 ataaaaagaa ttaaccaaga atcaaaaaca cttcaatgtt ga 162 // ID NC006583_229; SV 1; special; RNA; MAM; 336 BP. XX AC NC006583_229; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_229; NC006583_229. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..336 FT /organism="Canis familiaris" FT CDS 1..336 FT /protein_id="NC006583_229" FT /db_xref="trGEN:NC006583_229" FT /translation="MVPISWLCSVQERLGVLNQVVNSARREMSSMNGHPILPG FT NKMSGLLHSEMMGSISPVSGDDHGASCVCQEVAAASPLVPLLTILIQCVDFKR FT PAASREPKTLLQPSGINLD" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '+' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..115 FT /number=1 FT /note="FIRST EXON; p-value: 0.454." FT exon 116..336 FT /number=2 FT /note="LAST EXON; p-value: 0.413." FT CONTIG join(NC_006583:8884153...8884267, FT 8906581...8906801) XX SQ Sequence 336 BP; 78 A; 76 C; 84 G; 98 T; other; atggttccta tttcttggct gtgctccgtg caggagagat tgggagtgtt gaatcaagtt 60 gtgaattccg caagaagaga aatgagctcc atgaacggtc atccaatttt acctggtaat 120 aagatgagtg gtcttctgca ctcagaaatg atgggctcca tttcgcctgt gagtggcgat 180 gaccatggcg cttcttgtgt ctgtcaagaa gtggcagcag cctctcctct tgttcccttg 240 ctaacaatcc tgattcagtg tgttgatttc aaaaggccag ctgcttccag agagcctaag 300 accctccttc agcccagtgg cataaatctt gattag 336 // ID NC006583_230; SV 1; special; RNA; MAM; 291 BP. XX AC NC006583_230; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_230; NC006583_230. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..291 FT /organism="Canis familiaris" FT CDS 1..291 FT /protein_id="NC006583_230" FT /db_xref="trGEN:NC006583_230" FT /translation="MDPGFGGEESWMAMSGQYWYQVKFVSPKEFSKEEIVRRR FT EHVNNIPEPLMDDPMAFPPIDTCHLQSARYNREGGKTVQLLRKTVRRFLAKLN FT MLFQ" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '-' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..69 FT /number=1 FT /note="FIRST EXON; p-value: 0.583." FT exon 70..217 FT /number=2 FT /note="INTERNAL EXON; p-value: 0.571." FT exon 218..291 FT /number=3 FT /note="LAST EXON; p-value: 0.215." FT CONTIG join(NC_006583:8934737...8934669, 8918038...8917891, FT 8909448...8909375) XX SQ Sequence 291 BP; 87 A; 59 C; 75 G; 70 T; other; atggaccctg ggtttggagg agaggaaagt tggatggcta tgagtggaca atactggtac 60 caggtcaaat tcgtttcccc gaaggaattt tcaaaagaag aaatagtgag gagaagagag 120 catgtgaata acatcccgga acctttgatg gatgatccca tggcttttcc ccccattgac 180 acttgtcatc ttcagtcggc caggtacaac agggaaggag gcaaaacagt acagctgctt 240 cgcaagacag ttaggcggtt tcttgctaaa cttaacatgc tcttccaata a 291 // ID NC006583_231; SV 1; special; RNA; MAM; 282 BP. XX AC NC006583_231; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_231; NC006583_231. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..282 FT /organism="Canis familiaris" FT CDS 1..282 FT /protein_id="NC006583_231" FT /db_xref="trGEN:NC006583_231" FT /translation="MTVKGEILCPKEPQNETGIIGIRICQYQYNYFKDETDYP FT ASSGKGGYDRGRAQAGGTTEGKRELGSPLSREPDVELDSRTLGSRRGEGRHLT FT D" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '+' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..146 FT /number=1 FT /note="FIRST EXON; p-value: 0.760." FT exon 147..282 FT /number=2 FT /note="LAST EXON; p-value: 0.921." FT CONTIG join(NC_006583:8943811...8943956, FT 8947389...8947524) XX SQ Sequence 282 BP; 94 A; 51 C; 83 G; 54 T; other; atgactgtga aaggagagat tctgtgccct aaagaacccc aaaatgagac aggaatcatt 60 ggaattagaa tatgtcagta tcaatacaat tattttaaag atgagactga ttatccagct 120 tctagtggca agggtggcta tgacagaggg agagcacaag caggaggaac aacagaggga 180 aagagagaat taggctcccc gctgagcagg gagcctgatg tggagctcga ttccaggacc 240 ctgggatcac gacgagggga aggcagacat ttgaccgact ga 282 // ID NC006583_232; SV 1; special; RNA; MAM; 288 BP. XX AC NC006583_232; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_232; NC006583_232. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..288 FT /organism="Canis familiaris" FT CDS 1..288 FT /protein_id="NC006583_232" FT /db_xref="trGEN:NC006583_232" FT /translation="MTFYEAEIQKTRVRAESGFCMEGQVCSSSRWGDGWAAVP FT PICRRQQIKRKKTVRDLSEESDPISSQDPHPHPHGPSNPPSPLRSSVSLSSSV FT HRC" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '+' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..288 FT /number=1 FT /note="SINGLE EXON; p-value: 0.396." FT CONTIG join(NC_006583:8972681...8972968 FT join(NC_006583:8972681...8972968) XX SQ Sequence 288 BP; 84 A; 66 C; 71 G; 67 T; other; atgacatttt atgaagctga aatccagaaa actagggtcc gagcagagag tgggttttgt 60 atggagggtc aagtctgtag ttcctccaga tggggtgatg gatgggcagc tgtccctcca 120 atttgcagaa ggcaacagat caaaagaaag aaaacagtga gagatttaag tgaagaaagt 180 gatccaataa gctctcagga tccacatcct cacccccatg gcccatcaaa tcctccatca 240 cctctcaggt cctcagtgag cctgagcagc tctgttcatc gctgttga 288 // ID NC006583_233; SV 1; special; RNA; MAM; 246 BP. XX AC NC006583_233; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_233; NC006583_233. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..246 FT /organism="Canis familiaris" FT CDS 1..246 FT /protein_id="NC006583_233" FT /db_xref="trGEN:NC006583_233" FT /translation="MIDHLTTVRMAIIKKTKDKSVGALESANGPVKSNCEHTG FT CRSLVLYACETQALLKHQLTATNALGSTPDAKTPYAQITLLE" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '-' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..64 FT /number=1 FT /note="FIRST EXON; p-value: 0.607." FT exon 65..246 FT /number=2 FT /note="LAST EXON; p-value: 0.990." FT CONTIG join(NC_006583:8980347...8980284, FT 8977287...8977106) XX SQ Sequence 246 BP; 77 A; 63 C; 53 G; 53 T; other; atgatagatc accttaccac tgttagaatg gctatcatca agaagacaaa agataaaagc 60 gttggagctt tggaatcagc aaacgggcca gtcaagtcca actgtgaaca cactggatgt 120 cgttctctgg tcctctatgc atgtgaaacc caggccctgc tcaagcatca gctgacagca 180 accaatgcgc ttggaagcac ccctgatgca aagacccctt atgcacagat aacactgctt 240 gagtaa 246 // ID NC006583_234; SV 1; special; RNA; MAM; 405 BP. XX AC NC006583_234; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_234; NC006583_234. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..405 FT /organism="Canis familiaris" FT CDS 1..405 FT /protein_id="NC006583_234" FT /db_xref="trGEN:NC006583_234" FT /translation="MESLIMAQKESSVAVRGRHLKSAQNQNRKAKSYGDIRII FT DDMNSLAKLHVLVWTLITRYHRLGSLNNEHLFFMVLEAQKSKIKVLTSSVCDE FT SQFLVCKWPSSCHVLTWKTHKARSLFIRTKSHHSGFTRAQCN" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '+' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..405 FT /number=1 FT /note="SINGLE EXON; p-value: 0.767." FT CONTIG join(NC_006583:8984518...8984922 FT join(NC_006583:8984518...8984922) XX SQ Sequence 405 BP; 125 A; 77 C; 90 G; 113 T; other; atggaatcac tgattatggc acaaaaggaa tccagtgtag ctgtaagagg gagacacttg 60 aagtctgccc agaatcagaa caggaaggct aaatcctatg gagatataag aataatcgat 120 gatatgaaca gtttggccaa actacatgtc ttagtttgga ctcttataac aagataccac 180 agacttggta gcttaaacaa cgaacattta tttttcatgg ttctggaggc tcagaagtct 240 aagatcaagg tgttgacatc ttctgtgtgt gatgagagcc agtttctggt ttgcaaatgg 300 ccatcttctt gtcatgtcct tacatggaag acacataagg ctcgttctct tttcataagg 360 acaaagtccc accatagtgg ctttacccga gcacagtgta actga 405 // ID NC006583_235; SV 1; special; RNA; MAM; 480 BP. XX AC NC006583_235; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_235; NC006583_235. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..480 FT /organism="Canis familiaris" FT CDS 1..480 FT /protein_id="NC006583_235" FT /db_xref="trGEN:NC006583_235" FT /translation="MEKQREDTREVHLGSTKGKGASCEASPLFPHQIHRACVC FT LLRGHVGSTLSPSQTCVTLGVLLAIAKGYPLNVTVAAGYGGDVKDSPSPKCQQ FT RKSLDLISEAFCRTAKKNKGKKISRDRKQQANQVLVWRGMGSLKIEGGALLCV FT NPDEPGSGIQQPIP" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '+' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..73 FT /number=1 FT /note="FIRST EXON; p-value: 0.450." FT exon 74..282 FT /number=2 FT /note="INTERNAL EXON; p-value: 0.003." FT exon 283..480 FT /number=3 FT /note="LAST EXON; p-value: 0.938." FT CONTIG join(NC_006583:8992230...8992302, 8994627...8994835, FT 9004030...9004227) XX SQ Sequence 480 BP; 151 A; 102 C; 131 G; 96 T; other; atggagaaac aaagagaaga cacaagagag gttcatctag gatctacaaa aggaaaagga 60 gccagctgtg aagctagccc tctgttcccc caccagatcc atagagcctg tgtctgcctc 120 ctgcgtggcc atgtgggctc taccttgagt ccaagccaga cttgtgtcac tcttggagtc 180 ttgctggcaa tagccaaggg ataccccttg aatgtcactg ttgctgcagg atacgggggt 240 gatgtgaagg acagtccctc tcccaaatgt cagcaaagaa aaagtcttga tttaataagt 300 gaggcatttt gcaggacagc gaaaaagaac aaagggaaaa aaatttcaag ggacaggaaa 360 cagcaagcaa accaggtgct ggtgtggaga ggaatgggca gcctgaaaat agaaggagga 420 gctctgcttt gtgtgaaccc tgatgaacca ggaagtggaa tacaacagcc aatcccttag 480 // ID NC006583_236; SV 1; special; RNA; MAM; 792 BP. XX AC NC006583_236; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_236; NC006583_236. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..792 FT /organism="Canis familiaris" FT CDS 1..792 FT /protein_id="NC006583_236" FT /db_xref="trGEN:NC006583_236" FT /translation="MTQLLGPQIHAVCPYRFLYSIGREYAVSRQYPDVSSFRI FT CSLATSLGSLWPIKAAGKLQLAVYAPECPVGCRYRTALWSGPQHYVWHQAIGD FT LSPGNPFLAKPIQECFKPLNKAETDHSDIPDSRIVSNEGQGKNTNLSIALYHK FT AHETGNQPTYFGQQKATKGMHLAAWEKLTIINFRKFLTPTYSVGGCVDGVLLK FT TASRSDCLSHDFILSFYLREKEREHKQEEWQTEEEEEADSPMSREPDAGLNLR FT TLGSQPELKADA" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '-' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..209 FT /number=1 FT /note="FIRST EXON; p-value: 0.646." FT exon 210..319 FT /number=2 FT /note="INTERNAL EXON; p-value: 0.373." FT exon 320..489 FT /number=3 FT /note="INTERNAL EXON; p-value: 0.025." FT exon 490..625 FT /number=4 FT /note="INTERNAL EXON; p-value: 0.559." FT exon 626..792 FT /number=5 FT /note="LAST EXON; p-value: 0.650." FT CONTIG join(NC_006583:9091579...9091371, 9090514...9090405, FT 9085629...9085460, 9074221...9074086, 9072324...9072158) XX SQ Sequence 792 BP; 235 A; 184 C; 195 G; 178 T; other; atgacccaac tactaggacc tcagatacat gccgtctgtc catataggtt tctctattcc 60 atcggaagag agtatgctgt cagcagacaa tacccagatg tcagctcctt caggatctgc 120 tcactagcca cctccctggg tagcctgtgg cccataaaag ctgcaggcaa actccaactg 180 gcagtttatg ctccagaatg ccctgtgggg tgtagataca gaaccgccct gtggtctggg 240 ccacagcact atgtctggca tcaggctata ggagacctga gtcctgggaa cccgtttctg 300 gcaaagccta tacaagaatg ctttaagcca ctaaataaag ctgagacaga ccacagtgat 360 atacctgatt ccagaatcgt gagcaatgaa ggccaaggaa agaatacaaa tttgtctata 420 gccttatatc acaaagcaca cgaaacagga aaccaaccaa cttactttgg ccagcagaaa 480 gctacaaagg gaatgcacct ggcagcttgg gaaaaactta ccatcatcaa ttttaggaag 540 tttctgaccc ctacctatag tgtgggtggg tgcgtggatg gtgttctgtt aaaaacagct 600 agcaggagtg actgtctttc tcatgacttt attttatctt tttatttgag agaaaaagag 660 agagagcaca agcaggagga gtggcagaca gaggaggagg aagaagctga ctccccaatg 720 agcagggagc ctgatgcagg gctcaatctc aggaccctgg ggtcacaacc tgagctgaag 780 gcagatgctt aa 792 // ID NC006583_237; SV 1; special; RNA; MAM; 465 BP. XX AC NC006583_237; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_237; NC006583_237. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..465 FT /organism="Canis familiaris" FT CDS 1..465 FT /protein_id="NC006583_237" FT /db_xref="trGEN:NC006583_237" FT /translation="MAFCQGIDRERMEQTQTAKEEEEEGGGEGEGEGEGEGEE FT EEEEEEEEEEEEEEEEEEEEEEERRKKKKKKEEGGGGGGGGEEKTHSDKVALV FT ECKKENGHFVSNLVLGDISFRQANLRKNKNLQIIENNGNNIGRFLLQKVHGFE FT VGIGPTETP" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '-' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..52 FT /number=1 FT /note="FIRST EXON; p-value: 0.173." FT exon 53..250 FT /number=2 FT /note="INTERNAL EXON; p-value: 0.661." FT exon 251..465 FT /number=3 FT /note="LAST EXON; p-value: 0.652." FT CONTIG join(NC_006583:9111460...9111409, 9099058...9098861, FT 9095735...9095521) XX SQ Sequence 465 BP; 216 A; 44 C; 139 G; 66 T; other; atggccttct gtcaaggaat agatagggaa agaatggaac agacccagac cgcaaaagaa 60 gaagaagaag aaggaggagg agaaggagaa ggagaaggag aaggagaagg agaagaagaa 120 gaagaagaag aagaagaaga agaagaagaa gaagaagaag aagaagaaga agaagaagaa 180 gaagaaagaa gaaagaagaa gaagaagaaa gaagaaggag gaggaggagg aggaggaggg 240 gaggagaaaa cccacagtga caaggtggca ttagtggaat gcaagaagga aaatggccat 300 tttgtttcca atttagttct tggagatatt tcgttcagac aagcaaatct aaggaaaaac 360 aaaaatttac aaattattga aaataatgga aataacattg gaagattctt acttcaaaaa 420 gtccacggtt ttgaagttgg cattggacca acagagacac cttga 465 // ID NC006583_238; SV 1; special; RNA; MAM; 969 BP. XX AC NC006583_238; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_238; NC006583_238. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..969 FT /organism="Canis familiaris" FT CDS 1..969 FT /protein_id="NC006583_238" FT /db_xref="trGEN:NC006583_238" FT /translation="MMGRLGLRGQIQLVSRALLLASCGCANPGLLSRQLLSPA FT PSSRGAGARRPGASALASALTGLSSLLGLRRFAGGDDAMEEGDAAGGADGGAR FT RPGVMRASWWGCWLRGGERASDGDSDSDSEPGAEDARIRILLLFVASLIIFHL FT SGATKKGTEKQTTSETQKSVQCGTWTKHAEGGIFTSPNYPSKYPPDRECIYII FT EAAPRQCIELYFDEKYSIEPSWECKFDHIEVRDGPFGFSPIIGRFCGQQNPPV FT IKSSGRFLWIKFFADGELESMGFSARYNFTPDFIYLFERERSRAGGRVEGEAD FT SQLSRKSDAGLDPKTLGS" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '+' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..15 FT /number=1 FT /note="FIRST EXON; p-value: 0.345." FT exon 16..147 FT /number=2 FT /note="INTERNAL EXON; p-value: 0.471." FT exon 148..209 FT /number=3 FT /note="INTERNAL EXON; p-value: 0.561." FT exon 210..406 FT /number=4 FT /note="INTERNAL EXON; p-value: 0.572." FT exon 407..460 FT /number=5 FT /note="INTERNAL EXON; p-value: 0.843." FT exon 461..598 FT /number=6 FT /note="INTERNAL EXON; p-value: 0.990." FT exon 599..847 FT /number=7 FT /note="INTERNAL EXON; p-value: 0.958." FT exon 848..969 FT /number=8 FT /note="LAST EXON; p-value: 0.812." FT CONTIG join(NC_006583:9113384...9113398, 9115077...9115208, FT 9115655...9115716, 9117337...9117533, 9119684...9119737, FT 9119971...9120108, 9126693...9126941, 9137086...9137207) XX SQ Sequence 969 BP; 226 A; 241 C; 284 G; 218 T; other; atgatgggta gattgggact gcgtggccag atacaactgg tttcccgggc gctcctcctg 60 gcttcctgtg gatgcgccaa ccccgggctc ttgagccggc agctcctctc tcccgcgcca 120 agttcgcgtg gagctggcgc tcggcggccc ggcgccagcg ctctcgcgtc ggcgctcacg 180 ggcctgtcct ctctcctcgg ccttcggagg ttcgccggcg gcgatgatgc aatggaggag 240 ggtgatgccg ccggcggtgc cgatggtggc gcccggcgcc cgggtgtgat gcgagcgtca 300 tggtggggat gctggcttcg cggcggtgag agagcgagcg acggcgacag cgacagcgac 360 agcgagccag gggcggagga cgccaggatt cggatcttgc tgctgtttgt agcaagttta 420 atcatcttcc atttgtctgg ggcaaccaag aaaggaacag aaaagcaaac cacctcggaa 480 actcagaagt cagtgcagtg tggaacttgg acaaaacatg cagagggagg tatctttacc 540 tctcccaact accccagcaa gtacccccct gaccgagagt gcatctacat catagaagct 600 gccccaagac agtgcattga actttacttt gatgaaaagt actctattga accgtcttgg 660 gagtgcaaat ttgatcatat tgaagttcga gatggacctt tcggattttc tccaataatt 720 ggacgttttt gtggacaaca aaatccacct gtaataaaat ccagtggaag atttctatgg 780 attaaatttt ttgctgatgg agagctggaa tctatgggat tttcagctcg atacaatttc 840 acacctgatt ttatttattt atttgagaga gaacgatcac gagcaggggg aagggtagag 900 ggagaagcag actcccagct gagcaggaaa tccgatgcag gactcgatcc caaaaccctg 960 ggatcataa 969 // ID NC006583_239; SV 1; special; RNA; MAM; 1134 BP. XX AC NC006583_239; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_239; NC006583_239. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..1134 FT /organism="Canis familiaris" FT CDS 1..1134 FT /protein_id="NC006583_239" FT /db_xref="trGEN:NC006583_239" FT /translation="MKLDHSLAPYTKINSKWMKDLNVRQDSIKILEENTGNTL FT FELGHSNFLQDTSTKAKETKAKMNYWDFIKIRSFCTAKDTVNKTQRQPTEWEK FT IFANDVSDKGLVSKIYKELLKLNTKETNNPILKWAKDMKRNLTEEDIDMANMH FT IRKCSASLAIREIQIKTTTRYHLTPVRMGKINKAESTNVGEDAEKREPSYTVD FT SDAMKRRDTCTPMFIAAMSTIAKLWKEPRCPSKDEWIKKIWFMYTMEYYSAIR FT NNKYPPFASTWMELEASSTLLSPATIWLSHRLKEKEQKFIDLAVEIRNYLLTI FT EESLHLNNGSHTEVTVMRAIWTLLQLVLFDSCRETALLSPLDFTSLMVHLAGQ FT GPPGPLETYILLRQDMRVQV" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '-' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..592 FT /number=1 FT /note="FIRST EXON; p-value: 0.646." FT exon 593..799 FT /number=2 FT /note="INTERNAL EXON; p-value: 0.601." FT exon 800..923 FT /number=3 FT /note="INTERNAL EXON; p-value: 0.775." FT exon 924..1134 FT /number=4 FT /note="LAST EXON; p-value: 0.392." FT CONTIG join(NC_006583:9155417...9154826, 9154709...9154503, FT 9152331...9152208, 9152196...9151986) XX SQ Sequence 1134 BP; 409 A; 249 C; 229 G; 247 T; other; atgaaactag accactctct tgcaccatac acaaagataa actcaaaatg gatgaaagat 60 ctaaatgtga gacaagattc catcaaaatc ctagaggaga acacaggcaa cacccttttt 120 gaactcggcc acagtaactt cttgcaagat acatccacga aggcaaaaga aacaaaagca 180 aaaatgaact attgggactt catcaagata agaagctttt gcacagcaaa ggatacagtc 240 aacaaaactc aaagacaacc tacagaatgg gagaagatat ttgcaaatga cgtatcagat 300 aaagggctag tttccaagat ctataaagaa cttcttaaac tcaacaccaa agaaacaaac 360 aatccaatcc tgaaatgggc aaaagacatg aagagaaatc tcacagagga agacatagac 420 atggccaaca tgcacataag aaaatgctct gcatcacttg ccatcaggga aatacaaatc 480 aaaaccacaa cgagatacca cctcacacca gtgagaatgg ggaaaattaa caaggcggaa 540 agcacaaatg ttggagagga tgcagagaaa agggaaccct cttacactgt tgattcagat 600 gcaatgaaac gccgggacac ctgcaccccg atgtttatag cagcaatgtc cacaatagcc 660 aaactgtgga aggagcctcg gtgtccatcg aaagatgaat ggataaagaa gatatggttt 720 atgtatacaa tggaatatta ctctgccatt agaaacaaca aatacccacc atttgcttca 780 acgtggatgg aactggaggc ttcctcaacc ctcttatctc ctgcaactat ctggctgagt 840 cacaggttaa aggaaaagga gcagaagttt atagatttag ctgtagaaat taggaattat 900 ctcttgacta ttgaggaatc cctgcattta aataatggtt ctcacacaga ggtcacagtg 960 atgagagcga tttggactct tcttcaactt gtcctctttg actcatgccg tgagaccgct 1020 ctcctaagtc cactagattt tacctccctg atggtccacc tggctgggca gggaccacct 1080 ggcccattgg aaacatacat cttgctacgc caagacatga gagtccaggt gtga 1134 // ID NC006583_240; SV 1; special; RNA; MAM; 390 BP. XX AC NC006583_240; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_240; NC006583_240. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..390 FT /organism="Canis familiaris" FT CDS 1..390 FT /protein_id="NC006583_240" FT /db_xref="trGEN:NC006583_240" FT /translation="MHVVLLLKFTPSCHPHFRRLDPVQDAQRVDADTSFLPIL FT AAPPPPSVASASSPSHTDSSFPDRIPAGEDQSLFSSLPLPYLYRDNLEHSQDA FT SRGRSSSVTFSSRLSYLKPHFLQLFNFDNEGDDHPPR" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '+' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..151 FT /number=1 FT /note="FIRST EXON; p-value: 0.211." FT exon 152..296 FT /number=2 FT /note="INTERNAL EXON; p-value: 0.283." FT exon 297..390 FT /number=3 FT /note="LAST EXON; p-value: 0.199." FT CONTIG join(NC_006583:9160962...9161112, 9165956...9166100, FT 9166259...9166352) XX SQ Sequence 390 BP; 79 A; 137 C; 78 G; 96 T; other; atgcatgtgg tgctgttgct gaaattcaca cctagctgcc acccccattt ccggcgtttg 60 gatcctgtcc aggatgctca gcgtgtggat gcagacacct cgtttttgcc aatcctggca 120 gcaccacctc caccctctgt cgcctctgcc agctcccctt cccacacgga ctcctccttc 180 cctgatcgga tcccagcagg agaggaccag tccctcttct cctcccttcc cctaccctac 240 ctctacaggg acaatttaga acactcacag gatgctagca ggggaagatc cagcagcgtg 300 accttctcca gtcgtctcag ttacctgaag cctcactttc ttcaactctt caactttgac 360 aatgagggtg atgaccaccc tccaagatag 390 // ID NC006583_241; SV 1; special; RNA; MAM; 282 BP. XX AC NC006583_241; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_241; NC006583_241. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..282 FT /organism="Canis familiaris" FT CDS 1..282 FT /protein_id="NC006583_241" FT /db_xref="trGEN:NC006583_241" FT /translation="MECHPRLLKLDIKGLAVSAFFLCGTHTWDARSYRTQQIH FT TVRKVNRPHGEAMWRATTSPQAAAPAEFPACGQYQLVGMGMRTLDQLNAQSTI FT T" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '-' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..282 FT /number=1 FT /note="SINGLE EXON; p-value: 0.659." FT CONTIG join(NC_006583:9170811...9170530 FT join(NC_006583:9170811...9170530) XX SQ Sequence 282 BP; 76 A; 80 C; 70 G; 56 T; other; atggagtgtc atcctagact tctgaagcta gacatcaagg gactggcagt gtctgctttc 60 ttcctttgtg gcactcacac ttgggatgct cgctcataca gaacccagca aatacacact 120 gtgaggaaag tcaacagacc acatggagaa gccatgtgga gggcaacgac gtctccccag 180 gcagcagccc cagctgaatt cccagcctgt ggccaatacc aactggttgg catgggcatg 240 aggaccctgg accaactcaa tgctcagagc accatcacat ga 282 // ID NC006583_242; SV 1; special; RNA; MAM; 447 BP. XX AC NC006583_242; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_242; NC006583_242. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..447 FT /organism="Canis familiaris" FT CDS 1..447 FT /protein_id="NC006583_242" FT /db_xref="trGEN:NC006583_242" FT /translation="MGGPEGIVESIQIMKEGKASASEAVDCKWYIRAPPRSKI FT YLRFLDYEMQNSNECKRNFVAVYDGSSSVGDLKAKFCSTVANDVMLRTGLGVI FT RMWADEGSRNSRFQMLFTSFQERLANTPPLECRKNLNITECHSMIVVTFCGKG FT DFA" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '+' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..114 FT /number=1 FT /note="FIRST EXON; p-value: 0.484." FT exon 115..343 FT /number=2 FT /note="INTERNAL EXON; p-value: 0.970." FT exon 344..447 FT /number=3 FT /note="LAST EXON; p-value: 0.244." FT CONTIG join(NC_006583:9187195...9187308, 9197061...9197289, FT 9203719...9203822) XX SQ Sequence 447 BP; 115 A; 101 C; 124 G; 107 T; other; atgggcggtc ctgaaggaat cgtggaatct atacaaatta tgaaggaagg caaagcctct 60 gcgagcgagg ccgtggattg caagtggtac atccgggcac ctccacgatc caagatttac 120 ttacgcttct tggactatga gatgcagaat tcaaacgaat gcaaaaggaa ctttgtggct 180 gtgtatgacg gcagcagctc agtgggggac ctgaaagcca agttctgtag cactgtggcc 240 aatgacgtca tgctccgcac gggtcttggg gtcatccgca tgtgggccga tgagggcagt 300 cggaacagcc ggtttcagat gctctttaca tcctttcaag aacgccttgc aaacacccct 360 cccctggagt gcaggaagaa tctgaatatc acagaatgtc actccatgat tgttgttacg 420 ttttgtggca aaggggattt tgcataa 447 // ID NC006583_243; SV 1; special; RNA; MAM; 486 BP. XX AC NC006583_243; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_243; NC006583_243. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..486 FT /organism="Canis familiaris" FT CDS 1..486 FT /protein_id="NC006583_243" FT /db_xref="trGEN:NC006583_243" FT /translation="MGNINKAGNNKCWRGCGEKGTLIHCWWECELVQPLWKTV FT WRFLKQLKIDLPYDPAIALLGIYPKDTDAVKRRDTCTPMFIAAMATIAKLWKE FT PRCPTKDEWIKKMWFMYTMEYYSAIRNDKYPPFASTWMELEGIMLSEDSWQTD FT NLTRDHVDLKSSMEIS" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '-' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..417 FT /number=1 FT /note="FIRST EXON; p-value: 0.672." FT exon 418..486 FT /number=2 FT /note="LAST EXON; p-value: 0.541." FT CONTIG join(NC_006583:9210737...9210321, FT 9208837...9208769) XX SQ Sequence 486 BP; 162 A; 93 C; 123 G; 108 T; other; atggggaaca ttaacaaggc aggaaacaac aaatgttgga gaggatgtgg agaaaaggga 60 accctcatac actgttggtg ggaatgtgaa ctggtgcagc cactctggaa aactgtgtgg 120 aggttcctca aacagttaaa aatagacctg ccctacgacc cagcaattgc actgctgggg 180 atttacccca aagatacaga tgcagtgaaa cgccgggaca cctgcacccc gatgtttata 240 gcagcaatgg ccacgatagc caaactgtgg aaggaacctc ggtgtccaac gaaagatgaa 300 tggataaaga agatgtggtt tatgtataca atggaatatt actcagctat tagaaatgac 360 aaatacccac catttgcttc aacgtggatg gaactggagg gtattatgct gagtgaagat 420 tcttggcaga ctgacaactt aactagagac cacgttgatc taaaaagttc aatggaaatt 480 tcgtga 486 // ID NC006583_244; SV 1; special; RNA; MAM; 675 BP. XX AC NC006583_244; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_244; NC006583_244. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..675 FT /organism="Canis familiaris" FT CDS 1..675 FT /protein_id="NC006583_244" FT /db_xref="trGEN:NC006583_244" FT /translation="MCINNTLVCNGLQNCVYPWDENHCKEKRKASLLDQLTNT FT SGTVIGVTSCIVIILIIISVIVQIKQPRKKYVQRKSDFDQTVFQEVFEPPHYE FT LCTLRGTGATADFADVADDFENYHKLRRSSSKCVHDHHCGSQVSSTKGSRSNL FT STRDASVLTEMPPQPVKPLIPPMNRRNILVMKHNYSQDAADACDIDEIEEVPT FT TSHRLSRHDKAVQRSVSIDFLMTPIT" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '+' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..76 FT /number=1 FT /note="FIRST EXON; p-value: 0.626." FT exon 77..675 FT /number=2 FT /note="LAST EXON; p-value: 0.909." FT CONTIG join(NC_006583:9221660...9221735, FT 9227422...9228020) XX SQ Sequence 675 BP; 191 A; 173 C; 155 G; 156 T; other; atgtgcatca acaatacgct ggtctgcaat ggactccaga actgtgtgta tccttgggat 60 gaaaatcatt gtaaagagaa gaggaaagcc agcctgctgg accagctcac caacaccagt 120 gggactgtca ttggcgtgac ttcctgcatt gtgatcatcc ttattatcat ttctgtcatt 180 gtgcagatca aacagcctcg taaaaaatat gtccaaagga aatcagactt tgaccagaca 240 gtttttcagg aggtgtttga acctcctcat tatgagttat gtactctcag agggacagga 300 gctaccgctg actttgcaga tgtggccgat gactttgaga actatcataa actgcggagg 360 tcctcttcta agtgcgttca cgaccatcac tgtgggtccc aagtgtccag tacgaaaggc 420 agccgcagta acctcagcac gagagatgct tctgtactga cagagatgcc cccgcagccc 480 gtcaaacccc tcatcccgcc catgaacaga agaaacatcc tcgtcatgaa acacaactac 540 tcgcaagatg ccgcagatgc ctgtgacatc gatgagatcg aggaggtgcc aacgacaagt 600 cacaggctgt cccgacacga caaagccgtc cagcggtcag tatcaataga ttttttgatg 660 acacctataa cctga 675 // ID NC006583_245; SV 1; special; RNA; MAM; 636 BP. XX AC NC006583_245; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_245; NC006583_245. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..636 FT /organism="Canis familiaris" FT CDS 1..636 FT /protein_id="NC006583_245" FT /db_xref="trGEN:NC006583_245" FT /translation="MLPTLHFVQIHVRTPDGLSVGESQQHCDAAVGGRVDQPH FT RCKWTVWERANWPAQLHCCAQDYVSEEPPRSRHRCKHTRVYLQARAWIQVHPT FT QRSRDLGTPAFELMLSLLLTIELCPRLRIRETTKEPTVMQAHEGLLTSSRLDP FT SIPDTEKQGLGPQGDLAGTLWQRKGPKCKVPGLVIQSHQLEGENLSLLQYLMI FT SNLQDLLKRTTIH" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '-' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..53 FT /number=1 FT /note="FIRST EXON; p-value: 0.181." FT exon 54..163 FT /number=2 FT /note="INTERNAL EXON; p-value: 0.600." FT exon 164..304 FT /number=3 FT /note="INTERNAL EXON; p-value: 0.511." FT exon 305..475 FT /number=4 FT /note="INTERNAL EXON; p-value: 0.554." FT exon 476..559 FT /number=5 FT /note="INTERNAL EXON; p-value: 0.044." FT exon 560..636 FT /number=6 FT /note="LAST EXON; p-value: 0.056." FT CONTIG join(NC_006583:9271826...9271774, 9271670...9271561, FT 9270167...9270027, 9268783...9268613, 9238018...9237935, FT 9235028...9234952) XX SQ Sequence 636 BP; 179 A; 160 C; 161 G; 136 T; other; atgttgccaa cattgcattt tgtgcaaatt catgtccgca ctcctgatgg tttgtctgta 60 ggagagtcac agcaacattg tgacgctgct gtcgggggtc gtgtagatca acctcatcgc 120 tgcaagtgga ccgtgtggga gagagccaac tggccagctc aactgcattg ttgtgcccaa 180 gattacgtat ccgaggaacc accaagaagc cgacaccgat gcaaacacac gagggtttat 240 ttacaagctc gagcttggat ccaagtacac ccgacacaga ggagcaggga cttggggacc 300 ccagcttttg aattaatgct tagccttctc ctgacaattg agctgtgccc aagattgcga 360 atccgagaaa ccaccaagga gccaacagtg atgcaagcgc acgagggttt attaacaagc 420 tcacgcttgg atccaagtat acccgacaca gagaagcagg gactgggacc ccaaggagat 480 ctggcgggga ccctctggca aaggaaagga ccaaagtgca aagtcccagg cctggtgatt 540 cagagccatc aattggaagg tgaaaatctc tccttgctcc agtatttgat gatctccaac 600 cttcaagacc tgctcaaaag gacaactatt cattaa 636 // ID NC006583_246; SV 1; special; RNA; MAM; 882 BP. XX AC NC006583_246; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_246; NC006583_246. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..882 FT /organism="Canis familiaris" FT CDS 1..882 FT /protein_id="NC006583_246" FT /db_xref="trGEN:NC006583_246" FT /translation="MRVTGKFSVSGLRQSILGATRAPTRAPLRTGRGAGTDAV FT QGHRHGRGFPRGRSRYLAGAALTEEMQEPDAQMRRGGPSGMEQGRSPKSQAAR FT CTRAFRTWESAAAALHGASRERGARGRGRHVSGMRCTDVWMRLCERALHRVQD FT PTRSTAFLRICGLTSTRVRVRCIRIVSVSGNEGGQCLQAEDDLRREPPKKPHG FT SPETAGNRILPTARVSPPPNLFHWHLLPPGPPPGLLAPFSAAGGVGGAERSPW FT LLWTQLYPPPPVHPHVPMAGTWLLTPAQPPSCECVSGPEPFH" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '+' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..267 FT /number=1 FT /note="FIRST EXON; p-value: 0.491." FT exon 268..523 FT /number=2 FT /note="INTERNAL EXON; p-value: 0.597." FT exon 524..636 FT /number=3 FT /note="INTERNAL EXON; p-value: 0.799." FT exon 637..882 FT /number=4 FT /note="LAST EXON; p-value: 0.867." FT CONTIG join(NC_006583:9276545...9276811, 9276896...9277151, FT 9277650...9277762, 9279277...9279522) XX SQ Sequence 882 BP; 159 A; 289 C; 280 G; 154 T; other; atgcgagtga caggaaagtt ctctgtgtct gggctccgcc aaagtatctt gggggcaacc 60 agagctccca cgagagcacc gctccgcacg gggaggggtg cgggcacaga cgccgtccag 120 ggacaccgcc acggccgcgg tttcccacgg ggacggagcc gctacctcgc aggtgctgct 180 ctcactgaag agatgcagga gcctgatgct cagatgcgga gaggcggtcc ctccgggatg 240 gaacaaggca gatcaccaaa gtcccaggct gcacgttgca caagagcttt tcggacttgg 300 gagtccgccg ccgccgccct gcacggtgcc tccagggagc gcggagcccg aggccgtggg 360 cggcacgtgt cggggatgcg gtgcacggac gtgtggatgc ggctttgcga gcgggccctg 420 caccgagtcc aggacccgac ccgaagcacc gcatttctgc ggatatgcgg gttgacctct 480 acccgtgttc gtgtaagatg tatacggatc gtctccgtgt ccgggaacga gggtgggcag 540 tgtctccaag ctgaggatga cctccgccgg gagccaccta agaagccgca cggaagtcct 600 gaaaccgcag ggaaccggat tctgccgaca gcccgagtct cgcccccacc aaacctcttc 660 cactggcacc tgctgccccc gggaccaccc ccagggctgc tggcaccatt cagtgctgct 720 ggtggtgtag gtggtgcaga gcggtctccc tggctgctct ggacacagct ctaccccccc 780 ccccccgtcc acccccatgt gcccatggca ggaacttggc ttttaactcc agcacagccg 840 ccttcttgtg agtgtgtgag cggtcccgaa ccttttcatt aa 882 // ID NC006583_247; SV 1; special; RNA; MAM; 237 BP. XX AC NC006583_247; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_247; NC006583_247. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..237 FT /organism="Canis familiaris" FT CDS 1..237 FT /protein_id="NC006583_247" FT /db_xref="trGEN:NC006583_247" FT /translation="MFLRGETTDVGGTNTKGVWCPGTSAEVCQGGGGGICGML FT LMALQMFSGHRYQLSKNSRKKQERTLFVARSIQNDQIGD" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '+' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..124 FT /number=1 FT /note="FIRST EXON; p-value: 0.954." FT exon 125..237 FT /number=2 FT /note="LAST EXON; p-value: 0.575." FT CONTIG join(NC_006583:9285697...9285820, FT 9286735...9286847) XX SQ Sequence 237 BP; 74 A; 45 C; 70 G; 48 T; other; atgttcctaa gaggggaaac cactgacgta ggaggaacga acaccaaggg agtatggtgc 60 cctggaacca gtgcagaggt atgtcaagga ggaggaggag gcatctgtgg aatgctgctg 120 atggccctac aaatgttttc tggccacagg tatcagctgt ccaaaaattc taggaagaaa 180 caagagagaa cacttttcgt ggccagatct atccaaaatg atcagattgg ggactga 237 // ID NC006583_248; SV 1; special; RNA; MAM; 1101 BP. XX AC NC006583_248; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_248; NC006583_248. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..1101 FT /organism="Canis familiaris" FT CDS 1..1101 FT /protein_id="NC006583_248" FT /db_xref="trGEN:NC006583_248" FT /translation="MDETGRIVEIRSHCKIYEGSHMITKRSQGMRPAADFSFT FT ALRKDPLGLPFDFRLPDSSLRDRFLLVGPPVGARCQLKESKGCLSLLLEPPTK FT HTVPASFLTSARIPLRPVHSMKCYWLSCVPHKLLHPRLPSQDLKYNCADGGEK FT IFKEVIKVKRGPTGCQRSSGAVWGGLLGGARQHPPPSPQEAPTSRAVSGHYRF FT LIRRTPLGGEAASDDSGQRAASARDAGRCEGRRGQNAEHLRGSMGKIINHPKN FT ASSPPQNDRPMQDKRIEAMSPNIEGPKTNSENLCASVQGEIKTKRKQLIASGR FT AYYLPFLEKWKELTMYNEGHPLSPIQCRDEREGQTLRMFNLHQDRVATINVIS FT CKIRLVSGH" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '-' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..55 FT /number=1 FT /note="FIRST EXON; p-value: 0.395." FT exon 56..214 FT /number=2 FT /note="INTERNAL EXON; p-value: 0.282." FT exon 215..338 FT /number=3 FT /note="INTERNAL EXON; p-value: 0.424." FT exon 339..475 FT /number=4 FT /note="INTERNAL EXON; p-value: 0.594." FT exon 476..625 FT /number=5 FT /note="INTERNAL EXON; p-value: 0.038." FT exon 626..685 FT /number=6 FT /note="INTERNAL EXON; p-value: 0.031." FT exon 686..895 FT /number=7 FT /note="INTERNAL EXON; p-value: 0.553." FT exon 896..1101 FT /number=8 FT /note="LAST EXON; p-value: 0.317." FT CONTIG join(NC_006583:9339137...9339083, 9331993...9331835, FT 9331617...9331494, 9330434...9330298, 9296569...9296420, FT 9295150...9295091, 9294706...9294497, 9293918...9293713) XX SQ Sequence 1101 BP; 311 A; 283 C; 291 G; 216 T; other; atggatgaga caggaagaat agtggaaatt agaagccatt gtaagatcta cgaaggaagc 60 cacatgatca ccaagagaag ccaaggaatg aggcctgcag ccgatttctc cttcacagcc 120 ctcagaaagg acccactcgg attacctttt gatttcagac tcccagactc cagtctgaga 180 gacagatttc tgctggttgg gcccccagtc ggtgccagat gtcaactcaa agagtctaag 240 ggctgcttgt ccttgcttct agagcctccc accaagcaca cggtcccagc ttcctttctg 300 acatctgcgc gaatccctct ccgtcctgtt cattccatga aatgttactg gctgagttgt 360 gtcccccaca aactcctgca tccacgtctt ccctcccagg acctgaaata caactgtgca 420 gatggtggag agaagatctt taaagaggtg attaaggtga agcgaggccc cacaggatgc 480 cagcggagct caggagcagt gtggggaggg ctgcttggtg gagcccgaca gcacccaccc 540 ccaagcccac aagaggcccc tacctcgagg gccgtgagcg gacactaccg ctttctcatc 600 aggaggactc ccttaggggg agaagcggcc tcagatgaca gtgggcagag ggcagcatct 660 gctcgggacg caggcaggtg cgaggggagg agaggccaaa atgcagagca ccttcgaggt 720 tcgatgggaa aaattattaa tcacccgaag aacgccagct ccccgcccca gaatgataga 780 ccaatgcagg acaagaggat agaggcgatg tccccaaaca tcgagggccc caagacaaat 840 agtgagaacc tctgtgccag tgtccagggg gaaataaaaa caaagagaaa acaattaata 900 gcctcaggca gggcctatta cctgccattt ttggaaaaat ggaaagaact gactatgtat 960 aatgaaggtc atcccctcag ccccatccag tgcagagatg aaagagaggg tcagactctg 1020 cgaatgttta atttgcatca ggaccgggta gccactatca atgtaatttc atgcaaaata 1080 agattggtgt ctggacactg a 1101 // ID NC006583_249; SV 1; special; RNA; MAM; 453 BP. XX AC NC006583_249; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_249; NC006583_249. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..453 FT /organism="Canis familiaris" FT CDS 1..453 FT /protein_id="NC006583_249" FT /db_xref="trGEN:NC006583_249" FT /translation="MHFRNGSEITYDDSICIIATRYIRNKTNPPGASVRIDND FT PGESPSGSEHDFIKHGRHTSRITGTAVFDRRVRMCDNTREALPAKATHPLCGV FT QTVYGGLITWTWLTTCVTNLNLLSPPEVKAPTMEHTVSIDLPTSCLQLVPFCR FT SLALE" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '+' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..87 FT /number=1 FT /note="FIRST EXON; p-value: 0.893." FT exon 88..211 FT /number=2 FT /note="INTERNAL EXON; p-value: 0.115." FT exon 212..453 FT /number=3 FT /note="LAST EXON; p-value: 0.976." FT CONTIG join(NC_006583:9349765...9349851, 9358689...9358812, FT 9364428...9364669) XX SQ Sequence 453 BP; 121 A; 116 C; 102 G; 114 T; other; atgcactttc gaaatggaag tgaaatcacg tatgatgact ctatttgtat cattgcaacc 60 aggtacatca gaaataaaac gaacccacct ggagccagtg tgaggattga taacgatcct 120 ggagagagtc ccagtggttc agaacatgat ttcattaaac acggacgtca tacttctagg 180 ataacaggca cagcggtatt tgacagaaga gtgaggatgt gtgacaacac tcgtgaagca 240 ttgccagcca aggccactca cccactctgt ggtgtccaga cagtttatgg ggggttgatc 300 acctggacat ggctgaccac ctgtgtcact aaccttaatc tcctgtcccc ccccgaggtc 360 aaggccccta ccatggagca caccgttagc atagatctcc ccacatcttg cctgcaactt 420 gttccttttt gtcgttcctt agctcttgaa tag 453 // ID NC006583_250; SV 1; special; RNA; MAM; 2424 BP. XX AC NC006583_250; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_250; NC006583_250. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..2424 FT /organism="Canis familiaris" FT CDS 1..2424 FT /protein_id="NC006583_250" FT /db_xref="trGEN:NC006583_250" FT /translation="MELETQTSVLLCEDVQRTLHNGRCQLSKLSPSSDFSALT FT GCCVYQFLADPNTDFTTPLPLLLGTITPFASGDRQLLHIPQKHIMKLSAWGDL FT GVKLYPRPYRKDMVQFLRPYRRSVNDTAGIVVVDGMSLHLQRNDSAAVEYSLS FT AQAPSASQRAKYFSQRCFEKSGRKRVHLNTVWGRHRLYSSVVCAHVVRPVTTN FT DNPTAAYITLAERLCEQRRSAKSSVATFGQTEGTEGSREDRWLLSYFLQRTGL FT LLSGSQQTVSEPHPCPRDAATPAALARPQAAAGRPRRPRLFYRGPWRACVPGR FT ARDRIGSIECRGRGRAGAGAGAGARLRPEQQLLPCWVAVGGVVRGPWAPLSAF FT AEGAGGGVAGVSEVTDRCRASAEALQKPGPPYRTAPPARAAPEPSGMPCPARR FT GLPRTCCAHRGRGAQVPGGVRLQPHVRSHGHLLLGISVRSGSAKVAFSATRST FT NHEPSEMSNRTMTIYFDQNWQRHRHLDDRQSFKAQGSEVQLLTQGNRTSYFSL FT GWGLPGAVLVNIGNHFDLASSIFVAPRKGIYSFSFHVVKVYNRQTIQVSLMQN FT GYPVISAFAGDQDVTREAASNGVLLLMEREDKTPWTRQNRTTCFQPLSDCRAH FT LGLPSSLLSSICTRVCESTPGSGASKPTGPATLPQDPPLICQGKRCVDAPCEH FT LAGSHLEVTAVTGFGRGTLGAVFQILLVLAPCTTIVLQYSWEPTGAGFICQGN FT VTNPKAMEEETSQRMLICPLCNNVTKILMIKSHNLRFRINGFDVWLALLPSHR FT LPTPPVCGSKGHGSRTRGKEAHTVPL" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '+' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..50 FT /number=1 FT /note="FIRST EXON; p-value: 0.799." FT exon 51..117 FT /number=2 FT /note="INTERNAL EXON; p-value: 0.820." FT exon 118..267 FT /number=3 FT /note="INTERNAL EXON; p-value: 0.726." FT exon 268..425 FT /number=4 FT /note="INTERNAL EXON; p-value: 0.462." FT exon 426..866 FT /number=5 FT /note="INTERNAL EXON; p-value: 0.674." FT exon 867..1056 FT /number=6 FT /note="INTERNAL EXON; p-value: 0.598." FT exon 1057..1271 FT /number=7 FT /note="INTERNAL EXON; p-value: 0.410." FT exon 1272..1443 FT /number=8 FT /note="INTERNAL EXON; p-value: 0.326." FT exon 1444..1569 FT /number=9 FT /note="INTERNAL EXON; p-value: 0.881." FT exon 1570..1689 FT /number=10 FT /note="INTERNAL EXON; p-value: 0.872." FT exon 1690..1803 FT /number=11 FT /note="INTERNAL EXON; p-value: 0.841." FT exon 1804..1861 FT /number=12 FT /note="INTERNAL EXON; p-value: 0.249." FT exon 1862..2424 FT /number=13 FT /note="LAST EXON; p-value: 0.275." FT CONTIG join(NC_006583:9370083...9370132, 9371437...9371503, FT 9371912...9372061, 9376990...9377147, 9378473...9378913, FT 9380060...9380249, 9380845...9381059, 9381568...9381739, FT 9381923...9382048, 9384668...9384787, 9385050...9385163, FT 9385310...9385367, 9386368...9386930) XX SQ Sequence 2424 BP; 537 A; 701 C; 672 G; 514 T; other; atggagctag agacccaaac atcagtcctg ctctgtgaag atgtacagag gaccctacac 60 aatggtcgtt gccagctctc aaaactttct ccatcctctg acttctcggc actgacaggt 120 tgctgtgtct accaattctt agcagatcca aatactgatt tcactacccc tctgcctttg 180 ctgctaggaa ccataacacc ttttgcctca ggagacagac agctactaca cattccccaa 240 aaacacatta tgaaactttc agcctggggt gatctgggtg ttaaacttta tcctagacca 300 tacagaaagg acatggtgca atttctgaga ccttacagac gctcagtaaa tgacactgct 360 ggcattgtgg ttgtggatgg gatgtcccta cacttacaga gaaacgactc tgccgctgta 420 gagtacagcc tgtctgcaca ggcaccctct gcaagtcaaa gggctaagta tttttctcaa 480 cgatgttttg aaaagtcagg tcgcaagagg gtacatttaa acacagtctg ggggaggcac 540 agactataca gctcagtggt ctgtgcgcac gttgtgcggc cagtgacaac caatgataac 600 ccgactgcag catacatcac cctggcagag cgtctgtgcg agcagcggag gtctgcaaaa 660 tcaagtgtcg ccacgtttgg ccagaccgag ggtaccgaag gatcccggga agatcgctgg 720 ttgttgtcat attttttgca gaggacagga ctgctgcttt ctgggtccca gcagaccgtc 780 agcgaacctc atccctgtcc ccgggacgcg gccaccccgg cggcgctcgc ccgcccgcag 840 gctgcggcag ggaggccccg gcgcccgcgt ctattttacc gaggaccttg gcgagcctgc 900 gttccgggga gggcgcgcga ccgtatcggc agcatcgagt gccggggccg gggccgggcc 960 ggggccgggg ccggggccgg ggcgaggctg cgcccggagc aacaacttct gccttgttgg 1020 gtggctgtcg gaggagttgt gcgggggccg tgggcgcccc tctccgcctt tgcagaaggg 1080 gctgggggtg gcgttgccgg cgtctccgag gtcaccgacc gctgtcgagc ttccgccgag 1140 gccctgcaga agcccgggcc cccctaccgg accgcacccc cggcgcgcgc cgccccggag 1200 ccctcgggga tgccctgccc cgcgcgccgg gggcttcctc ggacctgctg tgcccatcgg 1260 ggaagggggg cgcaagtgcc tggtggtgtg cgactccaac cccacgtccg atcccacggg 1320 cacctcctcc tgggcatctc ggtgcgctcc ggcagcgcca aggtggcctt ctccgccacg 1380 cggagcacca accacgagcc gtccgagatg agcaaccgca ccatgaccat ctacttcgac 1440 cagaactggc agcgccatcg gcacttggat gaccgacagt cctttaaagc tcagggatct 1500 gaagtgcagc tcctcaccca aggaaatcgc acatcctact tttcgctggg atgggggctg 1560 ccgggtgcgg tattagtaaa tattggcaac catttcgatc tcgcctccag tatttttgta 1620 gcaccgagga aagggattta tagcttcagc ttccacgtgg tcaaagtgta caacagacaa 1680 accatccagg tcagtttaat gcagaacggc taccccgtga tctcagcgtt tgcgggtgac 1740 caggacgtta ccagagaagc tgccagcaat ggtgtcctgc tgctgatgga aagagaggac 1800 aaaacaccct ggactcgcca gaataggacc acttgtttcc aacctctgtc ggactgtcga 1860 gcgcacctgg gtctgcccag cagcctgttg tcatctattt gcacccgtgt ctgcgagagc 1920 acaccaggct caggtgcttc aaagccaaca ggaccagcta ctctccctca ggatcctcct 1980 ctgatctgcc aaggaaagag gtgtgttgat gctccctgcg aacacctggc aggaagccac 2040 ctggaagtca cagcagttac aggttttggc agaggcaccc tgggagcagt tttccaaatc 2100 cttcttgttt tggccccttg tacaacaata gtattacaat acagctggga gccgacgggt 2160 gcaggattca tatgccaagg aaatgttact aatcccaaag caatggaaga agagacctca 2220 cagcggatgt taatttgtcc tttgtgtaac aatgtaacca aaatattgat gataaagagt 2280 cataatttaa gattcagaat aaatgggttt gatgtctggc ttgctcttct cccttcacat 2340 cgtctcccaa ctcctccagt gtgtggaagt aaaggccacg gatcaaggac tcggggaaag 2400 gaagcccaca ctgtgcctct ttaa 2424 // ID NC006583_251; SV 1; special; RNA; MAM; 1737 BP. XX AC NC006583_251; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_251; NC006583_251. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone. CC -------------------------------------------------------------------------- XX FH Key Location/Qualifiers FH FT source 1..1737 FT /organism="Canis familiaris" FT CDS 1..1737 FT /protein_id="NC006583_251" FT /db_xref="trGEN:NC006583_251" FT /translation="MNYWDFIKIRSFCTAKDTVNKTKRQPTEWEKIFANDISD FT KGLVSKIYKALIKLNTKETNNPIMKWAKDMKRNLTEEDIDMANMHMRKCSASL FT AIREIQIKTTMRYHLTPARMGQINKAGNNKCWRGCGEKGTLLHCWWECELVQP FT LWKTVWRFLKQLKIYLPYDPAIALLGIYPKDTNAMKRRDTCTPMFIAAMATIA FT KLWKEPRCPSKDEWIKKMWFMYTMEYYSAIRNDKYPPFASTWMELEGIMLSES FT NVEESGAPTALVLPNLPDEDWSEVSATIQSDCIPVPAHTRRRTHASLLTRFKF FT PTAQGLVSLFQNLMFHPVRPLNGPRTNGCLESECSLLLQSIRLGAALAERHEH FT QFAVFCPVLARLSLPRGKSSDPGKPQGLMTPRLGCKAECLKAVYCAALSDEQC FT GNGGNEDSAPPGPITGKTGIEKGKDERVPARRKGKIARSSGRQERLGNEDELE FT RSILLRNRVTRRKGTGNGRCAKGLEAGVSGFQECFQDPAALIDPASQCYHMLA FT GGSPDSPEHPFPSRVSSPDKGDSMSKCGMYGDWVEGQRERERISSKACTECGA FT PTQGSAPGP" FT /evidence="EXPERIMENTAL" FT /note="the CDS was virtually spliced from the '-' strand FT of contig NC_006583 based on exons predicted by GENSCAN" FT exon 1..750 FT /number=1 FT /note="FIRST EXON; p-value: 0.948." FT exon 751..1057 FT /number=2 FT /note="INTERNAL EXON; p-value: 0.017." FT exon 1058..1201 FT /number=3 FT /note="INTERNAL EXON; p-value: 0.374." FT exon 1202..1497 FT /number=4 FT /note="INTERNAL EXON; p-value: 0.879." FT exon 1498..1610 FT /number=5 FT /note="INTERNAL EXON; p-value: 0.254." FT exon 1611..1737 FT /number=6 FT /note="LAST EXON; p-value: 0.239." FT CONTIG join(NC_006583:9454504...9453755, 9430433...9430127, FT 9417646...9417503, 9412787...9412492, 9410171...9410059, FT 9408277...9408151) XX SQ Sequence 1737 BP; 549 A; 380 C; 442 G; 366 T; other; atgaactatt gggacttcat caagataaga agcttttgca cagcaaagga tacagtcaac 60 aaaactaaaa gacaacctac agaatgggag aagatatttg caaatgacat atcagataaa 120 gggctagttt ccaagatcta taaagcactt attaaactca acaccaaaga aacaaacaat 180 ccaatcatga aatgggcaaa agacatgaag agaaatctca cagaggaaga catagacatg 240 gccaacatgc acatgagaaa atgctctgca tcacttgcca tcagggaaat acaaatcaaa 300 accacaatga gataccacct cacaccagcg agaatggggc aaattaacaa ggcaggaaac 360 aacaaatgtt ggagaggatg cggagaaaag ggaaccctct tacactgttg gtgggaatgt 420 gaactggtgc agccactctg gaaaactgtg tggaggttcc tcaaacagtt aaaaatatac 480 ctgccctatg acccagcaat tgcactgttg gggatttacc ccaaagatac aaatgcaatg 540 aaacgccggg acacctgcac cccgatgttt atagcagcaa tggccacgat agccaaactg 600 tggaaggagc ctcggtgtcc atcgaaagat gaatggataa agaagatgtg gtttatgtat 660 acaatggaat attactcagc tattagaaat gacaaatacc caccatttgc ttcaacgtgg 720 atggaactgg agggtattat gctgagtgaa agtaatgtgg aagaatctgg tgctcccact 780 gctctggtgc tcccgaatct acccgatgag gactggagtg aggtttctgc taccatccag 840 agcgattgca tcccagtgcc tgctcacaca aggagaagga ctcatgcttc tctactcacc 900 aggttcaaat tccccacagc ccaagggttg gtgtccctct tccagaatct aatgttccat 960 cctgtcaggc ctctgaatgg tcctagaacg aatgggtgtc tggagtcaga gtgttcactc 1020 ttgcttcaat ctatcaggtt aggtgctgcc ctggcagaga gacacgaaca ccagtttgct 1080 gtgttttgcc cagttttggc cagactgtct cttccaagag gaaaatcctc agacccaggc 1140 aaacctcaag ggctaatgac cccaagatta ggatgtaaag ctgagtgtct gaaggcagtg 1200 tactgtgctg cactcagtga tgaacaatgt gggaatgggg gaaatgagga ctcagctccc 1260 ccagggccca tcactggaaa aacaggaatt gaaaaaggaa aggatgaaag agtccctgca 1320 agaaggaaag gaaagatcgc aaggtcctcc gggaggcaag agaggctagg aaatgaggat 1380 gagctagaaa gatccatttt actgagaaac agggtcacaa ggagaaaagg cacaggaaat 1440 ggaaggtgtg ccaagggcct ggaggctgga gtttcagggt ttcaagaatg ctttcaggac 1500 ccagctgcac ttattgatcc tgcttctcag tgttatcaca tgctggctgg agggtcacct 1560 gactccccag agcatccatt tccttccagg gtctcttccc ctgacaaagg agatagcatg 1620 agcaagtgtg gcatgtatgg tgattgggtg gaggggcaga gagagaggga gagaatctca 1680 agcaaagcct gcactgaatg tggagctcca acacagggct ccgccccagg accctga 1737 // ID NC006583_252; SV 1; special; RNA; MAM; 417 BP. XX AC NC006583_252; XX DT DATE (Rel. 1.00, Created) DT 15-May-2008 (Rel. 1.00, Last updated, version 1) XX DE Chromosome: 1. XX XX OS Canis familiaris (Dog) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. XX DR EMBL; NC_006583; NC_006583. DR trGEN; NC006583_252; NC006583_252. XX CC -------------------------------------------------------------------------- CC This entry is NOT a real RNA sequence. It is a hypothetical CDS CC obtained by genscan from a DNA sequence. It is known to be error prone